# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- Cdc6_C PF09079.11 gi|332795694|ref|YP_004457194.1| - 2.2e-12 46.8 0.0 5.1e-12 45.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|332795694|ref|YP_004457194.1| - 4.1e-09 36.8 0.0 8.1e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332795694|ref|YP_004457194.1| - 2.2e-08 34.6 0.1 6.4e-08 33.1 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|332795694|ref|YP_004457194.1| - 0.0035 16.6 0.0 0.0058 15.8 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_10 PF12846.7 gi|332795694|ref|YP_004457194.1| - 0.0055 15.7 0.1 0.57 9.0 0.0 2.4 1 1 2 3 3 3 1 AAA-like domain DUF87 PF01935.17 gi|332795694|ref|YP_004457194.1| - 0.0067 16.5 0.0 0.019 15.0 0.0 1.8 1 0 0 1 1 1 1 Helicase HerA, central domain AAA_16 PF13191.6 gi|332795694|ref|YP_004457194.1| - 0.01 16.2 0.0 0.028 14.8 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_7 PF12775.7 gi|332795694|ref|YP_004457194.1| - 0.011 15.3 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region KNOX1 PF03790.13 gi|332795694|ref|YP_004457194.1| - 0.014 15.1 0.0 0.042 13.6 0.0 1.7 1 0 0 1 1 1 0 KNOX1 domain ATPase_2 PF01637.18 gi|332795694|ref|YP_004457194.1| - 0.015 15.3 1.0 0.044 13.7 1.0 1.8 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_assoc_2 PF16193.5 gi|332795694|ref|YP_004457194.1| - 0.032 14.6 0.0 0.1 13.0 0.0 1.8 1 0 0 1 1 1 0 AAA C-terminal domain DUF2075 PF09848.9 gi|332795694|ref|YP_004457194.1| - 0.036 13.3 0.0 0.052 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|332795694|ref|YP_004457194.1| - 0.18 11.8 0.1 3 7.8 0.1 2.8 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Microtub_bd PF16796.5 gi|332795694|ref|YP_004457194.1| - 0.21 11.5 0.7 1 9.3 0.0 2.4 3 0 0 3 3 3 0 Microtubule binding Sec34 PF04136.15 gi|332795695|ref|YP_004457195.1| - 0.0046 16.8 3.5 0.12 12.3 0.4 2.1 1 1 1 2 2 2 2 Sec34-like family Vac_Fusion PF02346.16 gi|332795695|ref|YP_004457195.1| - 0.011 15.3 3.8 0.55 9.9 0.2 2.3 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 bZIP_1 PF00170.21 gi|332795695|ref|YP_004457195.1| - 0.031 14.4 11.6 0.067 13.3 1.3 2.5 2 1 0 2 2 2 0 bZIP transcription factor DivIC PF04977.15 gi|332795695|ref|YP_004457195.1| - 0.044 13.6 1.1 0.044 13.6 1.1 2.3 2 1 0 2 2 2 0 Septum formation initiator DUF4795 PF16043.5 gi|332795695|ref|YP_004457195.1| - 0.091 12.3 8.3 1.8 8.1 8.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) DUF4164 PF13747.6 gi|332795695|ref|YP_004457195.1| - 0.14 12.5 5.9 3.8 7.8 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) FAM194 PF14977.6 gi|332795695|ref|YP_004457195.1| - 0.21 10.9 1.1 0.23 10.7 0.1 1.6 2 0 0 2 2 2 0 FAM194 protein Snapin_Pallidin PF14712.6 gi|332795695|ref|YP_004457195.1| - 0.28 11.6 6.7 1.1 9.8 0.3 2.2 2 0 0 2 2 2 0 Snapin/Pallidin OmpH PF03938.14 gi|332795695|ref|YP_004457195.1| - 0.37 11.1 9.4 0.59 10.5 9.4 1.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Ntox28 PF15605.6 gi|332795695|ref|YP_004457195.1| - 0.39 11.0 6.1 0.24 11.7 0.3 2.0 1 1 1 2 2 2 0 Bacterial toxin 28 DUF1664 PF07889.12 gi|332795695|ref|YP_004457195.1| - 0.45 10.6 3.6 2.5 8.2 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DUF4140 PF13600.6 gi|332795695|ref|YP_004457195.1| - 0.8 10.2 5.2 9.7 6.7 0.5 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF4686 PF15742.5 gi|332795695|ref|YP_004457195.1| - 1.7 7.7 15.7 3.7 6.6 3.7 2.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4686) CCDC73 PF15818.5 gi|332795695|ref|YP_004457195.1| - 7 4.3 14.9 0.78 7.5 5.5 2.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 73 family Pterin_4a PF01329.19 gi|332795696|ref|YP_004457196.1| - 5.8e-29 100.1 0.1 6.4e-29 100.0 0.1 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase GGACT PF06094.12 gi|332795697|ref|YP_004457197.1| - 5.5e-28 98.0 7.1 1.8e-19 70.5 1.4 2.1 2 0 0 2 2 2 2 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|332795697|ref|YP_004457197.1| - 3.7e-10 40.1 2.0 3.1e-07 30.7 0.2 2.2 2 0 0 2 2 2 2 AIG2-like family PDDEXK_2 PF12784.7 gi|332795698|ref|YP_004457198.1| - 0.0034 16.9 0.2 0.0035 16.9 0.2 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease family transposase NfeD PF01957.18 gi|332795699|ref|YP_004457199.1| - 1.3e-16 60.7 1.7 2.4e-16 59.8 1.7 1.5 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF2190 PF09956.9 gi|332795699|ref|YP_004457199.1| - 0.039 14.4 0.0 0.043 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2190) SID-1_RNA_chan PF13965.6 gi|332795699|ref|YP_004457199.1| - 0.16 10.4 0.6 0.16 10.3 0.6 1.0 1 0 0 1 1 1 0 dsRNA-gated channel SID-1 Thermopsin PF05317.11 gi|332795700|ref|YP_004457200.1| - 2e-26 93.0 6.3 2e-26 93.0 6.3 2.1 2 0 0 2 2 2 1 Thermopsin Big_1 PF02369.16 gi|332795700|ref|YP_004457200.1| - 0.014 15.4 0.1 0.043 13.8 0.1 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) Band_7 PF01145.25 gi|332795701|ref|YP_004457201.1| - 6.5e-40 137.0 1.8 1.5e-39 135.9 1.9 1.5 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|332795701|ref|YP_004457201.1| - 0.003 17.3 0.3 0.007 16.1 0.2 1.6 2 0 0 2 2 2 1 SPFH domain-Band 7 family DUF4315 PF14193.6 gi|332795701|ref|YP_004457201.1| - 0.021 14.8 2.0 0.042 13.8 2.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4315) RBFA PF02033.18 gi|332795701|ref|YP_004457201.1| - 0.083 13.4 0.4 0.18 12.3 0.1 1.7 2 0 0 2 2 2 0 Ribosome-binding factor A Nup54 PF13874.6 gi|332795701|ref|YP_004457201.1| - 0.22 11.6 2.5 0.32 11.1 2.5 1.2 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 ProSAAS PF07259.12 gi|332795701|ref|YP_004457201.1| - 1.9 8.4 6.3 0.25 11.3 2.0 1.6 2 0 0 2 2 2 0 ProSAAS precursor Rhodanese PF00581.20 gi|332795702|ref|YP_004457202.1| - 4.3e-11 43.3 0.0 6.2e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Rhodanese-like domain DUF2203 PF09969.9 gi|332795703|ref|YP_004457203.1| - 3.8e-30 105.1 0.2 1.6e-29 103.1 0.2 1.7 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2203) DUF4342 PF14242.6 gi|332795703|ref|YP_004457203.1| - 0.0083 16.1 1.4 1.4 8.9 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4342) DUF3347 PF11827.8 gi|332795703|ref|YP_004457203.1| - 0.21 11.8 0.0 0.26 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) Fer4_9 PF13187.6 gi|332795704|ref|YP_004457204.1| - 2.4e-06 27.6 10.4 5.1e-06 26.5 10.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332795704|ref|YP_004457204.1| - 9.5e-06 26.1 11.5 0.00016 22.2 0.9 2.8 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332795704|ref|YP_004457204.1| - 1.3e-05 25.0 13.0 0.0001 22.2 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|332795704|ref|YP_004457204.1| - 2.1e-05 24.1 2.7 2.1e-05 24.1 2.7 2.7 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_10 PF13237.6 gi|332795704|ref|YP_004457204.1| - 2.2e-05 24.5 23.9 0.00069 19.7 14.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332795704|ref|YP_004457204.1| - 0.0002 21.3 12.6 0.0029 17.6 2.5 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|332795704|ref|YP_004457204.1| - 0.00054 20.5 3.9 0.022 15.3 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332795704|ref|YP_004457204.1| - 0.00099 19.5 7.3 0.095 13.2 0.4 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332795704|ref|YP_004457204.1| - 0.0024 18.2 15.6 0.041 14.4 3.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|332795704|ref|YP_004457204.1| - 0.0047 17.1 5.8 0.01 16.1 5.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|332795704|ref|YP_004457204.1| - 0.0076 17.1 4.4 0.0076 17.1 4.4 2.8 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|332795704|ref|YP_004457204.1| - 0.14 13.2 14.2 0.068 14.1 2.2 2.4 1 1 2 3 3 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|332795704|ref|YP_004457204.1| - 0.23 11.6 13.1 0.034 14.3 2.1 2.2 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|332795704|ref|YP_004457204.1| - 0.43 10.7 4.7 0.8 9.9 4.7 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332795704|ref|YP_004457204.1| - 8.5 7.3 9.1 0.33 11.8 1.1 2.4 3 0 0 3 3 2 0 4Fe-4S dicluster domain Peptidase_M1 PF01433.20 gi|332795706|ref|YP_004457206.1| - 8.9e-84 280.4 1.7 2e-83 279.3 1.7 1.5 1 0 0 1 1 1 1 Peptidase family M1 domain Peptidase_M1_N PF17900.1 gi|332795706|ref|YP_004457206.1| - 1.9e-32 113.0 1.0 3e-32 112.3 0.4 1.7 2 0 0 2 2 2 1 Peptidase M1 N-terminal domain ERAP1_C PF11838.8 gi|332795706|ref|YP_004457206.1| - 1.9e-32 113.1 0.0 2.8e-32 112.5 0.0 1.3 1 0 0 1 1 1 1 ERAP1-like C-terminal domain Hormone_recep PF00104.30 gi|332795706|ref|YP_004457206.1| - 0.014 15.0 0.2 0.052 13.1 0.2 1.9 1 1 0 1 1 1 0 Ligand-binding domain of nuclear hormone receptor Aminopep PF10023.9 gi|332795706|ref|YP_004457206.1| - 0.029 13.7 0.1 0.055 12.8 0.1 1.4 1 0 0 1 1 1 0 Putative aminopeptidase DUF4476 PF14771.6 gi|332795706|ref|YP_004457206.1| - 0.1 12.9 0.1 0.37 11.1 0.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4476) Spindle_Spc25 PF08234.12 gi|332795706|ref|YP_004457206.1| - 0.36 11.1 2.8 18 5.6 0.1 3.1 3 0 0 3 3 3 0 Chromosome segregation protein Spc25 DUF4367 PF14285.6 gi|332795706|ref|YP_004457206.1| - 5 7.6 13.9 8.4 6.9 1.0 4.2 4 2 0 4 4 4 0 Domain of unknown function (DUF4367) PLDc_2 PF13091.6 gi|332795707|ref|YP_004457207.1| - 3.4e-06 27.0 0.4 3.4e-06 27.0 0.4 1.8 2 1 0 2 2 2 1 PLD-like domain DUF2207 PF09972.9 gi|332795707|ref|YP_004457207.1| - 0.0041 15.9 3.2 0.0044 15.8 3.2 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2207) Wzy_C PF04932.15 gi|332795707|ref|YP_004457207.1| - 0.095 12.3 6.7 0.15 11.7 6.7 1.3 1 0 0 1 1 1 0 O-Antigen ligase MSC PF09402.10 gi|332795707|ref|YP_004457207.1| - 2.7 7.4 7.7 31 3.9 7.7 2.0 1 1 0 1 1 1 0 Man1-Src1p-C-terminal domain Radical_SAM PF04055.21 gi|332795708|ref|YP_004457208.1| - 4.3e-13 50.0 0.1 2.7e-12 47.4 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|332795708|ref|YP_004457208.1| - 2.4e-08 34.3 0.5 5.9e-08 33.1 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332795708|ref|YP_004457208.1| - 1.8e-05 24.8 0.0 4.2e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4471 PF14740.6 gi|332795708|ref|YP_004457208.1| - 0.17 11.1 0.0 0.23 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4471) Glycos_transf_2 PF00535.26 gi|332795710|ref|YP_004457210.1| - 7.1e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|332795710|ref|YP_004457210.1| - 1e-11 44.6 0.0 1.5e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_3 PF13641.6 gi|332795710|ref|YP_004457210.1| - 1.3e-08 35.0 0.0 3.4e-08 33.6 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 TENA_THI-4 PF03070.16 gi|332795712|ref|YP_004457212.1| - 3.9e-30 105.2 3.5 4.7e-30 105.0 3.5 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family adh_short_C2 PF13561.6 gi|332795713|ref|YP_004457213.1| - 1.3e-26 93.6 0.0 1.7e-26 93.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|332795713|ref|YP_004457213.1| - 2.4e-24 85.9 0.0 2.9e-24 85.6 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|332795713|ref|YP_004457213.1| - 0.00047 20.1 0.0 0.00084 19.3 0.0 1.3 1 1 0 1 1 1 1 KR domain THF_DHG_CYH_C PF02882.19 gi|332795713|ref|YP_004457213.1| - 0.0094 15.3 0.0 0.022 14.1 0.0 1.6 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ADH_zinc_N PF00107.26 gi|332795713|ref|YP_004457213.1| - 0.011 15.7 0.0 0.16 12.0 0.0 2.4 1 1 0 1 1 1 0 Zinc-binding dehydrogenase NAD_binding_7 PF13241.6 gi|332795713|ref|YP_004457213.1| - 0.061 13.8 0.1 0.11 12.9 0.1 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding Thioredox_DsbH PF03190.15 gi|332795714|ref|YP_004457214.1| - 1.3e-61 207.3 0.1 2e-61 206.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|332795714|ref|YP_004457214.1| - 1.7e-14 53.7 0.0 3.6e-14 52.7 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|332795714|ref|YP_004457214.1| - 4.5e-05 23.4 0.4 0.00011 22.1 0.4 1.6 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|332795714|ref|YP_004457214.1| - 0.00015 22.1 0.0 0.00036 20.9 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like domain Gram_pos_anchor PF00746.21 gi|332795715|ref|YP_004457215.1| - 0.018 15.0 0.1 0.035 14.0 0.1 1.5 1 0 0 1 1 1 0 LPXTG cell wall anchor motif DUF5591 PF17884.1 gi|332795717|ref|YP_004457217.1| - 3.7e-22 78.8 1.7 4.3e-22 78.6 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) DUF87 PF01935.17 gi|332795718|ref|YP_004457218.1| - 5e-40 138.0 1.2 8.2e-40 137.3 1.2 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain FtsK_SpoIIIE PF01580.18 gi|332795718|ref|YP_004457218.1| - 0.0012 18.2 0.0 0.0051 16.2 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|332795718|ref|YP_004457218.1| - 0.0033 16.4 0.2 0.015 14.2 0.0 2.1 3 0 0 3 3 3 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|332795718|ref|YP_004457218.1| - 0.016 15.4 0.0 1.6 9.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|332795718|ref|YP_004457218.1| - 0.027 15.0 0.8 0.064 13.7 0.8 1.6 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.7 gi|332795718|ref|YP_004457218.1| - 0.096 11.6 0.0 0.18 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain SMC_N PF02463.19 gi|332795718|ref|YP_004457218.1| - 0.14 11.6 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain CUB PF00431.20 gi|332795718|ref|YP_004457218.1| - 0.17 12.2 0.1 0.62 10.4 0.1 1.9 2 0 0 2 2 2 0 CUB domain KAP_NTPase PF07693.14 gi|332795719|ref|YP_004457219.1| - 0.00014 21.2 0.5 0.0035 16.6 0.0 2.5 2 0 0 2 2 2 1 KAP family P-loop domain RPW8 PF05659.11 gi|332795719|ref|YP_004457219.1| - 0.021 14.5 0.4 0.021 14.5 0.4 3.4 3 1 0 3 3 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 CARD PF00619.21 gi|332795719|ref|YP_004457219.1| - 0.034 14.2 0.4 0.24 11.5 0.5 2.4 2 0 0 2 2 2 0 Caspase recruitment domain THDPS_N_2 PF14805.6 gi|332795719|ref|YP_004457219.1| - 0.066 13.4 0.4 2.6 8.3 0.0 2.9 2 0 0 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal CCDC-167 PF15188.6 gi|332795719|ref|YP_004457219.1| - 0.093 13.1 6.8 6.2 7.2 2.0 3.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 DASH_Duo1 PF08651.10 gi|332795719|ref|YP_004457219.1| - 0.21 11.4 8.7 2.9 7.8 0.9 4.1 4 0 0 4 4 4 0 DASH complex subunit Duo1 Toprim PF01751.22 gi|332795719|ref|YP_004457219.1| - 0.38 11.0 2.5 1.4 9.2 0.1 3.3 3 1 0 3 3 3 0 Toprim domain DUF16 PF01519.16 gi|332795719|ref|YP_004457219.1| - 2.8 8.5 12.4 1.4 9.5 0.7 4.2 4 0 0 4 4 4 0 Protein of unknown function DUF16 Latarcin PF10279.9 gi|332795720|ref|YP_004457220.1| - 0.0002 21.7 0.0 0.00046 20.5 0.0 1.8 1 1 0 1 1 1 1 Latarcin precursor BAR_3_WASP_bdg PF10456.9 gi|332795720|ref|YP_004457220.1| - 0.0021 17.6 2.8 0.36 10.2 0.7 2.1 1 1 1 2 2 2 2 WASP-binding domain of Sorting nexin protein YtxH PF12732.7 gi|332795720|ref|YP_004457220.1| - 0.14 12.7 3.7 5.6 7.6 0.3 2.7 2 1 0 2 2 2 0 YtxH-like protein Fib_alpha PF08702.10 gi|332795720|ref|YP_004457220.1| - 0.18 12.0 16.3 0.86 9.8 6.5 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family NRN1 PF15056.6 gi|332795720|ref|YP_004457220.1| - 0.2 11.7 3.0 4.5 7.4 0.0 3.2 2 1 0 3 3 3 0 Neuritin protein family p450 PF00067.22 gi|332795720|ref|YP_004457220.1| - 0.27 9.9 3.3 0.15 10.8 1.3 1.6 1 1 1 2 2 2 0 Cytochrome P450 COG5 PF10392.9 gi|332795720|ref|YP_004457220.1| - 0.52 10.5 7.2 1.8 8.7 0.8 2.9 2 1 1 3 3 3 0 Golgi transport complex subunit 5 DUF2207 PF09972.9 gi|332795720|ref|YP_004457220.1| - 9.4 4.9 9.6 13 4.4 9.2 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) NurA PF09376.10 gi|332795721|ref|YP_004457221.1| - 3.1e-09 36.9 0.3 4e-09 36.5 0.3 1.2 1 0 0 1 1 1 1 NurA domain Methyltr_RsmB-F PF01189.17 gi|332795722|ref|YP_004457222.1| - 3.1e-30 105.3 0.0 4.3e-30 104.9 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|332795722|ref|YP_004457222.1| - 6.9e-08 32.4 0.0 1.3e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332795722|ref|YP_004457222.1| - 1.8e-05 25.3 0.0 4e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|332795722|ref|YP_004457222.1| - 1.9e-05 24.5 0.0 3e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|332795722|ref|YP_004457222.1| - 0.014 14.8 0.0 0.021 14.2 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_4 PF02390.17 gi|332795722|ref|YP_004457222.1| - 0.087 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF2540 PF10802.8 gi|332795722|ref|YP_004457222.1| - 0.55 10.4 0.1 0.55 10.4 0.1 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2540) Glycos_transf_1 PF00534.20 gi|332795723|ref|YP_004457223.1| - 1.7e-22 79.8 0.0 2.6e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332795723|ref|YP_004457223.1| - 1.2e-07 32.2 0.0 1.9e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|332795723|ref|YP_004457223.1| - 3.8e-05 24.0 0.0 6.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 SidC_N PF18219.1 gi|332795724|ref|YP_004457224.1| - 0.089 11.8 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 SidC N-terminal domain DUF3740 PF12548.8 gi|332795725|ref|YP_004457225.1| - 0.16 12.4 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Sulfatase protein Rdx PF10262.9 gi|332795726|ref|YP_004457226.1| - 7.4e-19 67.7 0.0 8.4e-19 67.5 0.0 1.0 1 0 0 1 1 1 1 Rdx family COX1 PF00115.20 gi|332795727|ref|YP_004457227.1| - 6.3e-81 272.4 62.7 6.3e-81 272.4 62.7 1.7 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I ECH_1 PF00378.20 gi|332795728|ref|YP_004457228.1| - 7.6e-41 140.1 0.0 8.9e-41 139.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|332795728|ref|YP_004457228.1| - 3.9e-17 62.7 0.1 5.5e-16 59.0 0.0 1.9 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase ABC2_membrane PF01061.24 gi|332795729|ref|YP_004457229.1| - 2.1e-10 40.4 27.0 2.1e-10 40.4 27.0 2.5 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|332795729|ref|YP_004457229.1| - 1.1e-09 37.8 39.7 2.1e-09 36.9 39.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332795730|ref|YP_004457230.1| - 6.4e-34 117.4 0.0 1.1e-33 116.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332795730|ref|YP_004457230.1| - 5.5e-16 59.2 0.0 6.7e-10 39.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332795730|ref|YP_004457230.1| - 2e-05 24.5 0.0 0.076 12.7 0.0 2.1 1 1 1 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|332795730|ref|YP_004457230.1| - 6.8e-05 22.4 0.2 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|332795730|ref|YP_004457230.1| - 0.00016 22.2 1.8 0.0023 18.5 1.8 2.2 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|332795730|ref|YP_004457230.1| - 0.0059 16.6 0.1 0.014 15.3 0.1 1.8 1 1 0 1 1 1 1 Rad17 P-loop domain AAA PF00004.29 gi|332795730|ref|YP_004457230.1| - 0.016 15.6 0.1 0.078 13.4 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|332795730|ref|YP_004457230.1| - 0.021 15.0 0.0 0.35 11.1 0.0 2.6 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit SRP54 PF00448.22 gi|332795730|ref|YP_004457230.1| - 0.043 13.5 0.0 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|332795730|ref|YP_004457230.1| - 0.051 13.3 0.1 0.098 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|332795730|ref|YP_004457230.1| - 0.079 11.6 0.0 0.62 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|332795730|ref|YP_004457230.1| - 0.14 12.1 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|332795730|ref|YP_004457230.1| - 0.2 11.9 0.5 1.4 9.2 0.5 2.4 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332795730|ref|YP_004457230.1| - 0.22 11.2 0.0 0.4 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AIRS_C PF02769.22 gi|332795731|ref|YP_004457231.1| - 1.5e-12 47.9 0.1 2.3e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|332795731|ref|YP_004457231.1| - 4.6e-12 46.4 0.0 8.5e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain ATP-synt_ab_N PF02874.23 gi|332795731|ref|YP_004457231.1| - 0.098 13.2 0.0 0.29 11.7 0.0 1.7 1 0 0 1 1 1 0 ATP synthase alpha/beta family, beta-barrel domain NTP_transf_3 PF12804.7 gi|332795732|ref|YP_004457232.1| - 3.3e-11 43.8 0.0 6e-11 43.0 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain NTP_transferase PF00483.23 gi|332795732|ref|YP_004457232.1| - 0.001 18.7 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|332795732|ref|YP_004457232.1| - 0.029 14.3 0.0 0.15 12.0 0.0 1.8 2 0 0 2 2 2 0 Cytidylyltransferase DUF1614 PF07758.11 gi|332795733|ref|YP_004457233.1| - 4.9e-49 166.6 9.4 4.9e-49 166.6 9.4 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1614) ThiP_synth PF10120.9 gi|332795735|ref|YP_004457235.1| - 9e-54 181.5 0.1 1e-53 181.4 0.1 1.0 1 0 0 1 1 1 1 Thiamine-phosphate synthase PadR PF03551.14 gi|332795736|ref|YP_004457236.1| - 5.3e-19 68.0 0.0 9.6e-19 67.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|332795736|ref|YP_004457236.1| - 4.2e-09 37.1 2.0 4.2e-09 37.1 2.0 1.9 1 1 1 2 2 2 1 Replication terminator protein DUF4364 PF14277.6 gi|332795736|ref|YP_004457236.1| - 2.6e-06 27.3 5.5 4.2e-06 26.6 0.5 2.6 2 1 0 3 3 3 1 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|332795736|ref|YP_004457236.1| - 0.00019 21.6 0.1 0.00031 20.8 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|332795736|ref|YP_004457236.1| - 0.00049 19.9 0.1 0.0017 18.2 0.1 2.0 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Penicillinase_R PF03965.16 gi|332795736|ref|YP_004457236.1| - 0.00078 19.8 0.1 0.011 16.0 0.1 2.4 1 1 1 2 2 2 1 Penicillinase repressor HTH_45 PF14947.6 gi|332795736|ref|YP_004457236.1| - 0.0013 18.7 0.9 0.0013 18.7 0.9 2.4 1 1 1 2 2 2 1 Winged helix-turn-helix Stork_head PF10264.9 gi|332795736|ref|YP_004457236.1| - 0.0035 17.5 0.0 0.0077 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix Storkhead-box1 domain Mrr_N PF14338.6 gi|332795736|ref|YP_004457236.1| - 0.0052 16.9 0.1 1.6 8.9 0.0 2.7 3 0 0 3 3 3 1 Mrr N-terminal domain AphA_like PF14557.6 gi|332795736|ref|YP_004457236.1| - 0.0068 16.1 0.0 0.009 15.7 0.0 1.1 1 0 0 1 1 1 1 Putative AphA-like transcriptional regulator O-FucT PF10250.9 gi|332795736|ref|YP_004457236.1| - 0.019 14.7 0.1 0.024 14.4 0.1 1.1 1 0 0 1 1 1 0 GDP-fucose protein O-fucosyltransferase Ribosomal_L28e PF01778.17 gi|332795736|ref|YP_004457236.1| - 0.022 15.5 0.1 0.037 14.8 0.1 1.4 1 0 0 1 1 1 0 Ribosomal L28e protein family TrmB PF01978.19 gi|332795736|ref|YP_004457236.1| - 0.027 14.3 0.4 0.19 11.6 0.1 2.5 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB TUDOR PF00567.24 gi|332795736|ref|YP_004457236.1| - 0.033 14.2 0.9 0.099 12.7 0.2 2.0 1 1 1 2 2 2 0 Tudor domain Ter PF05472.11 gi|332795736|ref|YP_004457236.1| - 0.035 13.1 0.5 0.046 12.8 0.5 1.1 1 0 0 1 1 1 0 DNA replication terminus site-binding protein (Ter protein) DUF3105 PF11303.8 gi|332795736|ref|YP_004457236.1| - 0.065 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3105) PCRF PF03462.18 gi|332795736|ref|YP_004457236.1| - 0.14 12.0 0.8 0.2 11.5 0.8 1.3 1 0 0 1 1 1 0 PCRF domain Pyr_redox_2 PF07992.14 gi|332795737|ref|YP_004457237.1| - 1.7e-25 89.9 0.2 2.2e-25 89.5 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332795737|ref|YP_004457237.1| - 5.7e-07 30.0 0.2 0.0069 16.9 0.1 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|332795737|ref|YP_004457237.1| - 1.1e-06 27.8 0.5 4.4e-05 22.5 0.2 2.4 3 0 0 3 3 3 1 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|332795737|ref|YP_004457237.1| - 6e-06 26.3 0.0 0.011 15.7 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding DAO PF01266.24 gi|332795737|ref|YP_004457237.1| - 2.9e-05 23.8 0.0 0.013 15.1 0.0 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|332795737|ref|YP_004457237.1| - 3.5e-05 23.1 0.0 0.00035 19.8 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein PTS_IIB PF02302.17 gi|332795737|ref|YP_004457237.1| - 0.00052 20.7 0.4 1.1 10.0 0.0 2.8 3 0 0 3 3 3 2 PTS system, Lactose/Cellobiose specific IIB subunit Thi4 PF01946.17 gi|332795737|ref|YP_004457237.1| - 0.0012 18.2 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Sacchrp_dh_NADP PF03435.18 gi|332795737|ref|YP_004457237.1| - 0.0023 18.2 0.0 0.0054 17.0 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|332795737|ref|YP_004457237.1| - 0.0027 18.1 0.2 0.0055 17.1 0.2 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding HI0933_like PF03486.14 gi|332795737|ref|YP_004457237.1| - 0.0035 16.1 0.2 0.13 10.9 0.0 2.9 3 1 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|332795737|ref|YP_004457237.1| - 0.0057 16.9 0.0 0.014 15.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|332795737|ref|YP_004457237.1| - 0.0061 16.8 0.1 0.012 15.8 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.16 gi|332795737|ref|YP_004457237.1| - 0.0087 15.7 0.2 0.081 12.6 0.1 2.6 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA GIDA PF01134.22 gi|332795737|ref|YP_004457237.1| - 0.019 14.1 0.8 1.4 7.9 0.3 2.9 2 1 1 3 3 3 0 Glucose inhibited division protein A GMC_oxred_N PF00732.19 gi|332795737|ref|YP_004457237.1| - 0.026 13.9 0.0 0.047 13.1 0.0 1.3 1 0 0 1 1 1 0 GMC oxidoreductase FAD_binding_3 PF01494.19 gi|332795737|ref|YP_004457237.1| - 0.05 12.8 0.0 0.091 12.0 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|332795737|ref|YP_004457237.1| - 0.1 12.6 0.1 2.8 7.9 0.0 2.2 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox_3 PF13738.6 gi|332795737|ref|YP_004457237.1| - 0.17 11.1 3.4 0.64 9.2 1.4 2.4 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Presenilin PF01080.17 gi|332795738|ref|YP_004457238.1| - 0.071 11.9 8.6 0.075 11.8 8.6 1.0 1 0 0 1 1 1 0 Presenilin Bud13 PF09736.9 gi|332795738|ref|YP_004457238.1| - 0.12 12.7 14.5 0.18 12.2 14.5 1.1 1 0 0 1 1 1 0 Pre-mRNA-splicing factor of RES complex Sec62 PF03839.16 gi|332795738|ref|YP_004457238.1| - 0.17 11.4 13.1 0.23 10.9 13.1 1.1 1 0 0 1 1 1 0 Translocation protein Sec62 Zip PF02535.22 gi|332795738|ref|YP_004457238.1| - 0.37 10.0 4.5 0.37 10.0 4.5 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SLC12 PF03522.15 gi|332795738|ref|YP_004457238.1| - 0.62 9.0 11.1 0.76 8.7 11.1 1.1 1 0 0 1 1 1 0 Solute carrier family 12 PIEZO PF15917.5 gi|332795738|ref|YP_004457238.1| - 1.1 8.8 10.2 1.4 8.3 10.2 1.3 1 0 0 1 1 1 0 Piezo Membralin PF09746.9 gi|332795738|ref|YP_004457238.1| - 1.1 8.2 7.0 1.2 8.1 7.0 1.1 1 0 0 1 1 1 0 Tumour-associated protein RP-C_C PF11800.8 gi|332795738|ref|YP_004457238.1| - 1.2 9.2 7.1 1.5 8.9 7.1 1.2 1 0 0 1 1 1 0 Replication protein C C-terminal region DUF4407 PF14362.6 gi|332795738|ref|YP_004457238.1| - 1.2 8.4 3.8 1.2 8.4 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PA26 PF04636.13 gi|332795738|ref|YP_004457238.1| - 3.1 6.6 8.0 3.8 6.3 8.0 1.2 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) Hid1 PF12722.7 gi|332795738|ref|YP_004457238.1| - 3.5 5.6 11.2 4.2 5.4 11.2 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein CLN3 PF02487.17 gi|332795738|ref|YP_004457238.1| - 3.6 6.5 4.6 4.2 6.3 4.6 1.2 1 0 0 1 1 1 0 CLN3 protein Neur_chan_memb PF02932.16 gi|332795738|ref|YP_004457238.1| - 5 7.1 5.8 6.4 6.8 5.8 1.1 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region DUF3807 PF12720.7 gi|332795738|ref|YP_004457238.1| - 5.9 7.1 20.5 7.4 6.8 20.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3807) SAPS PF04499.15 gi|332795738|ref|YP_004457238.1| - 7.2 5.3 16.0 9.3 4.9 16.0 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Band_3_cyto PF07565.13 gi|332795738|ref|YP_004457238.1| - 9.1 6.0 9.7 12 5.6 9.7 1.1 1 0 0 1 1 1 0 Band 3 cytoplasmic domain AAA_31 PF13614.6 gi|332795739|ref|YP_004457239.1| - 7.5e-29 100.9 1.7 3.3e-28 98.8 1.7 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|332795739|ref|YP_004457239.1| - 7.9e-14 51.8 0.1 1.4e-13 51.0 0.1 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|332795739|ref|YP_004457239.1| - 3.6e-13 49.6 3.3 2e-12 47.1 3.3 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|332795739|ref|YP_004457239.1| - 1.3e-10 41.0 0.1 1.6e-10 40.7 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|332795739|ref|YP_004457239.1| - 3.8e-07 29.6 2.0 0.00011 21.5 0.3 2.2 1 1 1 2 2 2 2 Anion-transporting ATPase AAA_24 PF13479.6 gi|332795739|ref|YP_004457239.1| - 0.00049 19.9 0.1 0.0011 18.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|332795739|ref|YP_004457239.1| - 0.00062 19.3 0.1 0.26 10.7 0.0 2.3 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|332795739|ref|YP_004457239.1| - 0.0026 17.3 0.3 0.0048 16.4 0.2 1.4 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|332795739|ref|YP_004457239.1| - 0.0075 15.6 0.2 0.016 14.5 0.0 1.5 2 0 0 2 2 2 1 VirC1 protein RuvB_N PF05496.12 gi|332795739|ref|YP_004457239.1| - 0.034 13.9 0.6 0.089 12.5 0.1 1.8 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain CLP1_P PF16575.5 gi|332795739|ref|YP_004457239.1| - 0.13 12.0 0.2 0.9 9.3 0.1 2.2 3 0 0 3 3 3 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_25 PF13481.6 gi|332795739|ref|YP_004457239.1| - 0.2 11.2 1.2 3 7.4 1.2 2.1 1 1 0 1 1 1 0 AAA domain VIT1 PF01988.19 gi|332795740|ref|YP_004457240.1| - 2.9e-25 89.4 17.4 3.8e-15 56.3 0.5 2.4 1 1 1 2 2 2 2 VIT family Rubrerythrin PF02915.17 gi|332795740|ref|YP_004457240.1| - 1.7e-08 34.9 4.0 3.1e-08 34.1 4.0 1.4 1 0 0 1 1 1 1 Rubrerythrin COQ7 PF03232.13 gi|332795740|ref|YP_004457240.1| - 0.01 15.6 0.3 0.092 12.5 0.1 2.2 2 0 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Ferritin_2 PF13668.6 gi|332795740|ref|YP_004457240.1| - 0.025 14.8 0.1 2.9 8.1 0.0 2.2 2 0 0 2 2 2 0 Ferritin-like domain DUF2207 PF09972.9 gi|332795740|ref|YP_004457240.1| - 0.15 10.8 2.2 0.19 10.5 0.9 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DUF4064 PF13273.6 gi|332795740|ref|YP_004457240.1| - 0.48 10.7 13.7 2.1 8.7 0.2 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4064) Spore_GerQ PF09671.10 gi|332795741|ref|YP_004457241.1| - 0.015 15.3 0.9 0.46 10.5 0.1 2.7 1 1 1 2 2 2 0 Spore coat protein (Spore_GerQ) CN_hydrolase PF00795.22 gi|332795742|ref|YP_004457242.1| - 1.9e-16 60.2 0.0 5e-16 58.8 0.0 1.6 1 1 0 1 1 1 1 Carbon-nitrogen hydrolase CBS PF00571.28 gi|332795743|ref|YP_004457243.1| - 8.6e-40 135.0 5.4 2.1e-10 40.9 0.0 4.3 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|332795743|ref|YP_004457243.1| - 9.2e-07 29.6 2.8 2.4e-06 28.2 2.8 1.7 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein H_kinase_N PF12282.8 gi|332795743|ref|YP_004457243.1| - 0.021 14.8 0.3 6.7 6.7 0.0 2.7 2 1 1 3 3 3 0 Signal transduction histidine kinase Hist_deacetyl PF00850.19 gi|332795744|ref|YP_004457244.1| - 5.4e-80 269.1 0.0 1.6e-79 267.6 0.0 1.7 1 1 1 2 2 2 1 Histone deacetylase domain ATP-grasp PF02222.22 gi|332795745|ref|YP_004457245.1| - 1.5e-46 158.1 0.1 2.5e-46 157.4 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|332795745|ref|YP_004457245.1| - 1.5e-12 47.5 0.0 2.6e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.13 gi|332795745|ref|YP_004457245.1| - 2.7e-08 33.6 0.1 6.5e-08 32.3 0.1 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|332795745|ref|YP_004457245.1| - 9.1e-07 29.1 0.1 1.6e-06 28.3 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|332795745|ref|YP_004457245.1| - 5.9e-05 22.9 0.1 0.00028 20.7 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|332795745|ref|YP_004457245.1| - 0.00011 21.8 0.0 0.0021 17.7 0.0 2.4 2 1 0 2 2 2 1 RimK-like ATP-grasp domain LAL_C2 PF18603.1 gi|332795745|ref|YP_004457245.1| - 0.00026 21.1 0.9 0.0011 19.1 0.0 2.6 4 0 0 4 4 3 1 L-amino acid ligase C-terminal domain 2 2-Hacid_dh_C PF02826.19 gi|332795745|ref|YP_004457245.1| - 0.0014 18.1 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_ST PF14397.6 gi|332795745|ref|YP_004457245.1| - 0.0022 17.3 0.1 0.014 14.7 0.0 2.1 1 1 1 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|332795745|ref|YP_004457245.1| - 0.0027 17.3 0.2 0.0061 16.2 0.2 1.7 1 0 0 1 1 1 1 ATP-grasp domain Epimerase PF01370.21 gi|332795745|ref|YP_004457245.1| - 0.0056 16.2 0.0 0.0099 15.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ATP-grasp_5 PF13549.6 gi|332795745|ref|YP_004457245.1| - 0.0064 16.0 0.0 0.042 13.3 0.0 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_N PF18130.1 gi|332795745|ref|YP_004457245.1| - 0.007 16.9 0.1 0.037 14.6 0.1 2.2 1 0 0 1 1 1 1 ATP-grasp N-terminal domain PurK_C PF17769.1 gi|332795745|ref|YP_004457245.1| - 0.0093 15.6 0.0 0.019 14.6 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain 3HCDH_N PF02737.18 gi|332795745|ref|YP_004457245.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.17 gi|332795745|ref|YP_004457245.1| - 0.016 14.3 0.0 0.028 13.5 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain SpoU_sub_bind PF08032.12 gi|332795745|ref|YP_004457245.1| - 0.039 14.2 0.0 1.1 9.5 0.0 2.7 1 1 1 2 2 2 0 RNA 2'-O ribose methyltransferase substrate binding FMO-like PF00743.19 gi|332795745|ref|YP_004457245.1| - 0.16 10.4 0.0 0.25 9.7 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like PDDEXK_3 PF13366.6 gi|332795746|ref|YP_004457246.1| - 0.0019 18.5 0.3 0.0031 17.9 0.3 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily DUF4143 PF13635.6 gi|332795746|ref|YP_004457246.1| - 0.028 14.6 0.1 0.041 14.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) DUF1129 PF06570.11 gi|332795747|ref|YP_004457247.1| - 8.3 5.8 7.7 0.78 9.2 0.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1129) DAO PF01266.24 gi|332795750|ref|YP_004457250.1| - 1.3e-09 38.1 0.0 2.2e-05 24.2 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|332795750|ref|YP_004457250.1| - 0.00017 20.9 0.0 0.00031 20.1 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|332795750|ref|YP_004457250.1| - 0.0015 18.7 0.0 0.003 17.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|332795750|ref|YP_004457250.1| - 0.0087 16.0 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|332795750|ref|YP_004457250.1| - 0.014 14.5 0.0 2.8 6.9 0.0 2.6 3 0 0 3 3 3 0 Glucose inhibited division protein A F420_oxidored PF03807.17 gi|332795750|ref|YP_004457250.1| - 0.021 15.4 0.2 0.74 10.4 0.0 3.1 4 0 0 4 4 4 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|332795750|ref|YP_004457250.1| - 0.026 14.1 0.1 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|332795750|ref|YP_004457250.1| - 0.054 13.1 0.0 0.085 12.5 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.21 gi|332795750|ref|YP_004457250.1| - 0.07 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|332795750|ref|YP_004457250.1| - 0.11 13.1 0.0 0.38 11.3 0.0 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|332795750|ref|YP_004457250.1| - 0.15 12.5 0.0 0.25 11.8 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding MoCF_biosynth PF00994.24 gi|332795752|ref|YP_004457252.1| - 4e-31 107.6 0.0 4.7e-31 107.4 0.0 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain B12-binding PF02310.19 gi|332795752|ref|YP_004457252.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain Fer4_17 PF13534.6 gi|332795753|ref|YP_004457253.1| - 1.9e-08 34.7 1.0 0.0093 16.5 0.1 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332795753|ref|YP_004457253.1| - 3.6e-08 33.5 1.2 0.0059 16.7 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332795753|ref|YP_004457253.1| - 4.9e-08 32.5 14.0 0.00048 19.8 3.0 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|332795753|ref|YP_004457253.1| - 5.9e-08 33.1 2.3 1.2e-07 32.1 2.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332795753|ref|YP_004457253.1| - 4.6e-07 30.3 3.8 9.6e-07 29.3 3.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332795753|ref|YP_004457253.1| - 2.2e-06 27.5 13.2 0.0049 16.9 3.2 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|332795753|ref|YP_004457253.1| - 3e-06 27.4 1.3 0.052 13.8 0.0 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332795753|ref|YP_004457253.1| - 1.3e-05 26.0 7.0 0.061 14.3 1.1 2.6 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|332795753|ref|YP_004457253.1| - 6.1e-05 23.1 10.5 0.0033 17.5 12.0 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332795753|ref|YP_004457253.1| - 0.00018 21.7 9.4 0.0044 17.4 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332795753|ref|YP_004457253.1| - 0.0032 17.5 12.1 0.028 14.5 1.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|332795753|ref|YP_004457253.1| - 0.0052 17.6 16.2 0.21 12.6 3.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332795753|ref|YP_004457253.1| - 0.022 14.9 12.1 0.091 12.9 12.1 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332795753|ref|YP_004457253.1| - 0.041 14.7 3.7 2.6 8.9 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Dopey_N PF04118.14 gi|332795753|ref|YP_004457253.1| - 0.076 12.1 1.5 1.1 8.4 0.2 2.2 2 0 0 2 2 2 0 Dopey, N-terminal Fer4_13 PF13370.6 gi|332795753|ref|YP_004457253.1| - 0.092 13.3 0.7 0.092 13.3 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I DUF1160 PF06648.11 gi|332795753|ref|YP_004457253.1| - 0.41 10.6 3.8 0.58 10.2 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1160) Fer4_20 PF14691.6 gi|332795753|ref|YP_004457253.1| - 1.9 8.3 4.1 6.7 6.5 0.2 2.7 3 0 0 3 3 3 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Glycos_transf_1 PF00534.20 gi|332795754|ref|YP_004457254.1| - 1.2e-23 83.5 0.1 2.2e-23 82.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332795754|ref|YP_004457254.1| - 4.5e-20 72.5 0.0 7.6e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|332795754|ref|YP_004457254.1| - 0.0024 18.2 0.0 0.0053 17.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF3654 PF12376.8 gi|332795754|ref|YP_004457254.1| - 0.04 14.1 1.2 0.12 12.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3654) Imm27 PF15590.6 gi|332795754|ref|YP_004457254.1| - 0.069 12.9 0.3 0.3 10.9 0.3 2.1 1 0 0 1 1 1 0 Immunity protein 27 DEAD PF00270.29 gi|332795755|ref|YP_004457255.1| - 2.2e-24 86.2 0.0 2e-23 83.0 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332795755|ref|YP_004457255.1| - 2.6e-21 76.0 0.0 3.3e-17 62.8 0.0 2.7 2 0 0 2 2 2 2 Helicase conserved C-terminal domain DUF1998 PF09369.10 gi|332795755|ref|YP_004457255.1| - 1.9e-12 47.8 0.1 6.2e-12 46.1 0.1 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) ResIII PF04851.15 gi|332795755|ref|YP_004457255.1| - 4.5e-06 26.8 0.0 1.2e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|332795755|ref|YP_004457255.1| - 0.0014 18.0 0.0 0.005 16.2 0.0 1.8 2 0 0 2 2 2 1 SecA DEAD-like domain TFA2_Winged_2 PF18121.1 gi|332795755|ref|YP_004457255.1| - 0.049 13.3 0.8 16 5.3 0.1 3.2 2 1 0 2 2 2 0 TFA2 Winged helix domain 2 RNA_pol_A_CTD PF03118.15 gi|332795755|ref|YP_004457255.1| - 0.054 13.3 0.2 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain AAA_19 PF13245.6 gi|332795755|ref|YP_004457255.1| - 0.074 13.4 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|332795755|ref|YP_004457255.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Glycos_transf_2 PF00535.26 gi|332795757|ref|YP_004457257.1| - 2.3e-14 53.6 3.4 3.6e-14 52.9 3.4 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|332795757|ref|YP_004457257.1| - 0.021 14.7 0.0 0.041 13.8 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase like family 2 PsbI PF02532.14 gi|332795757|ref|YP_004457257.1| - 0.11 12.4 0.2 0.2 11.6 0.2 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) RRM_DME PF15628.6 gi|332795757|ref|YP_004457257.1| - 0.18 12.0 0.9 6.9 6.9 0.0 2.8 2 1 1 3 3 3 0 RRM in Demeter PglD_N PF17836.1 gi|332795757|ref|YP_004457257.1| - 1.7 9.3 4.9 2.8 8.6 0.4 2.6 1 1 1 2 2 2 0 PglD N-terminal domain Glycos_transf_2 PF00535.26 gi|332795758|ref|YP_004457258.1| - 3.2e-16 59.6 1.6 5.1e-16 59.0 1.6 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|332795758|ref|YP_004457258.1| - 2.5e-06 27.5 0.0 3.9e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GNT-I PF03071.15 gi|332795758|ref|YP_004457258.1| - 0.0036 16.1 0.2 0.0059 15.4 0.2 1.3 1 0 0 1 1 1 1 GNT-I family Glycos_transf_1 PF00534.20 gi|332795759|ref|YP_004457259.1| - 2.1e-18 66.5 0.3 4e-18 65.5 0.3 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332795759|ref|YP_004457259.1| - 4.5e-07 30.4 0.0 9.2e-07 29.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|332795759|ref|YP_004457259.1| - 7.1e-06 26.1 0.0 1.2e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Pyr_redox_2 PF07992.14 gi|332795760|ref|YP_004457260.1| - 8.1e-37 127.0 1.6 9.6e-37 126.8 1.6 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332795760|ref|YP_004457260.1| - 3e-19 69.4 0.0 1.7e-15 57.1 0.0 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|332795760|ref|YP_004457260.1| - 4.5e-09 36.3 1.3 2.1e-05 24.3 0.2 2.4 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332795760|ref|YP_004457260.1| - 1.3e-08 34.3 2.4 5.2e-06 25.8 0.3 3.1 2 1 1 3 3 3 2 FAD binding domain Pyr_redox PF00070.27 gi|332795760|ref|YP_004457260.1| - 1.5e-08 35.1 0.8 0.0002 21.8 0.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|332795760|ref|YP_004457260.1| - 1.5e-05 24.5 0.4 0.0006 19.3 0.2 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|332795760|ref|YP_004457260.1| - 7.5e-05 22.0 3.0 0.0014 17.8 0.1 2.7 2 1 1 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|332795760|ref|YP_004457260.1| - 0.00016 21.0 3.7 0.0014 17.9 0.1 2.8 2 1 0 3 3 3 1 Thi4 family NAD_binding_8 PF13450.6 gi|332795760|ref|YP_004457260.1| - 0.00025 21.2 0.1 0.00047 20.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|332795760|ref|YP_004457260.1| - 0.0019 17.0 0.0 0.072 11.8 0.0 2.4 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|332795760|ref|YP_004457260.1| - 0.0086 15.4 0.1 0.017 14.4 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Lycopene_cycl PF05834.12 gi|332795760|ref|YP_004457260.1| - 0.035 13.1 0.1 0.055 12.5 0.1 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein K_oxygenase PF13434.6 gi|332795760|ref|YP_004457260.1| - 0.041 13.0 0.0 6 5.9 0.0 2.9 3 0 0 3 3 3 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|332795760|ref|YP_004457260.1| - 0.076 12.3 0.1 0.16 11.3 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TauE PF01925.19 gi|332795761|ref|YP_004457261.1| - 3.1e-43 148.1 22.9 3.6e-43 147.9 22.9 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE OprD PF03573.13 gi|332795761|ref|YP_004457261.1| - 0.15 11.0 0.4 0.21 10.6 0.4 1.1 1 0 0 1 1 1 0 outer membrane porin, OprD family DUF3482 PF11981.8 gi|332795761|ref|YP_004457261.1| - 0.66 9.3 1.6 1.2 8.4 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3482) DUF1634 PF07843.11 gi|332795762|ref|YP_004457262.1| - 2.2e-24 85.5 13.1 2.5e-24 85.3 13.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1634) KASH PF10541.9 gi|332795762|ref|YP_004457262.1| - 1.2 9.4 0.0 1.2 9.4 0.0 2.6 3 0 0 3 3 3 0 Nuclear envelope localisation domain Metallophos PF00149.28 gi|332795763|ref|YP_004457263.1| - 6.2e-09 36.6 0.9 1.2e-08 35.8 0.9 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|332795763|ref|YP_004457263.1| - 4.3e-07 29.5 0.4 5.2e-06 26.0 0.0 2.2 2 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily Metallophos_2 PF12850.7 gi|332795763|ref|YP_004457263.1| - 4.1e-05 23.8 0.0 0.32 11.2 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain MetRS-N PF09635.10 gi|332795763|ref|YP_004457263.1| - 0.096 13.2 0.1 0.17 12.4 0.1 1.4 1 0 0 1 1 1 0 MetRS-N binding domain YcgL PF05166.13 gi|332795763|ref|YP_004457263.1| - 0.41 11.0 2.1 0.67 10.3 0.7 2.0 2 0 0 2 2 2 0 YcgL domain DUF5634 PF18681.1 gi|332795763|ref|YP_004457263.1| - 4.4 7.7 7.1 0.45 10.9 0.4 2.6 2 1 0 3 3 3 0 Family of unknown function (DUF5634) MFS_1 PF07690.16 gi|332795764|ref|YP_004457264.1| - 2.8e-24 85.7 59.3 5.1e-21 75.0 31.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332795764|ref|YP_004457264.1| - 0.0021 16.5 0.5 0.0021 16.5 0.5 2.1 2 0 0 2 2 2 1 Transmembrane secretion effector Molybdopterin PF00384.22 gi|332795765|ref|YP_004457265.1| - 2.7e-09 36.5 0.0 2.3e-06 26.9 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin oxidoreductase DUF2299 PF10061.9 gi|332795767|ref|YP_004457267.1| - 2.4e-48 163.4 0.1 2.7e-48 163.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2299) Methyltransf_11 PF08241.12 gi|332795768|ref|YP_004457268.1| - 2.1e-17 63.5 0.0 3e-17 63.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332795768|ref|YP_004457268.1| - 2.2e-12 47.5 0.0 3.2e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332795768|ref|YP_004457268.1| - 7.9e-11 42.0 0.1 1.2e-10 41.4 0.1 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|332795768|ref|YP_004457268.1| - 1.4e-07 31.5 0.0 1.8e-07 31.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|332795768|ref|YP_004457268.1| - 5.7e-06 25.8 0.0 1.6e-05 24.3 0.0 1.7 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|332795768|ref|YP_004457268.1| - 0.00016 21.3 0.0 0.00023 20.8 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_8 PF05148.15 gi|332795768|ref|YP_004457268.1| - 0.00017 21.6 0.1 0.00023 21.1 0.1 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|332795768|ref|YP_004457268.1| - 0.00069 20.3 0.0 0.0012 19.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|332795768|ref|YP_004457268.1| - 0.012 15.6 0.0 0.026 14.5 0.0 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Sugar_tr PF00083.24 gi|332795769|ref|YP_004457269.1| - 1.9e-40 139.1 25.0 2.9e-40 138.5 25.0 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332795769|ref|YP_004457269.1| - 1.6e-25 89.8 39.2 7.9e-23 80.9 31.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sars6 PF12133.8 gi|332795769|ref|YP_004457269.1| - 0.11 12.4 0.1 0.45 10.5 0.1 2.0 1 0 0 1 1 1 0 Open reading frame 6 from SARS coronavirus RNA_pol_Rpb5_C PF01191.19 gi|332795770|ref|YP_004457270.1| - 0.052 13.4 0.0 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase Rpb5, C-terminal domain Radical_SAM_C PF16199.5 gi|332795771|ref|YP_004457271.1| - 1.3e-26 92.4 0.3 2.6e-26 91.4 0.3 1.5 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|332795771|ref|YP_004457271.1| - 1.5e-20 74.2 0.0 3.8e-20 72.9 0.0 1.7 1 0 0 1 1 1 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|332795771|ref|YP_004457271.1| - 3.3e-09 37.0 0.5 6.4e-09 36.1 0.5 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|332795771|ref|YP_004457271.1| - 0.0002 21.3 0.3 0.0019 18.1 0.2 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|332795771|ref|YP_004457271.1| - 0.011 16.1 0.1 0.029 14.8 0.1 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ThiI PF02568.14 gi|332795772|ref|YP_004457272.1| - 9.2e-56 188.6 0.0 1.4e-55 187.9 0.0 1.3 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|332795772|ref|YP_004457272.1| - 2.8e-21 76.1 5.1 7.1e-21 74.8 1.0 2.5 2 0 0 2 2 2 1 THUMP domain Rhodanese PF00581.20 gi|332795772|ref|YP_004457272.1| - 4.9e-09 36.7 0.0 3e-08 34.1 0.0 2.3 2 0 0 2 2 2 1 Rhodanese-like domain QueC PF06508.13 gi|332795772|ref|YP_004457272.1| - 3.6e-05 23.4 0.1 0.027 14.0 0.1 3.2 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC Phage_connect_1 PF05135.13 gi|332795772|ref|YP_004457272.1| - 0.083 13.4 0.2 0.77 10.3 0.0 2.5 3 0 0 3 3 3 0 Phage gp6-like head-tail connector protein DUF1906 PF08924.11 gi|332795773|ref|YP_004457273.1| - 0.21 11.7 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) COQ7 PF03232.13 gi|332795775|ref|YP_004457275.1| - 4.2e-05 23.4 0.2 0.00019 21.3 0.3 1.8 1 1 0 1 1 1 1 Ubiquinone biosynthesis protein COQ7 AAA PF00004.29 gi|332795777|ref|YP_004457277.1| - 7.3e-76 252.9 0.1 7.8e-39 133.1 0.0 3.1 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|332795777|ref|YP_004457277.1| - 1.3e-19 70.5 0.2 1.7e-08 34.4 0.0 3.0 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|332795777|ref|YP_004457277.1| - 1.3e-15 57.6 0.1 1.2e-06 28.6 0.0 3.5 3 1 1 4 4 3 2 AAA domain TIP49 PF06068.13 gi|332795777|ref|YP_004457277.1| - 6.9e-15 55.1 1.5 6.7e-07 28.8 0.1 3.5 2 2 1 3 3 3 2 TIP49 P-loop domain AAA_5 PF07728.14 gi|332795777|ref|YP_004457277.1| - 2.5e-14 53.4 0.2 1.9e-05 24.7 0.0 3.4 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|332795777|ref|YP_004457277.1| - 6.4e-14 52.7 0.2 6.2e-05 23.4 0.0 4.1 3 1 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|332795777|ref|YP_004457277.1| - 1.4e-13 51.3 0.0 8.8e-06 25.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|332795777|ref|YP_004457277.1| - 8.7e-13 48.0 0.0 1.8e-05 24.1 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_22 PF13401.6 gi|332795777|ref|YP_004457277.1| - 2.3e-12 47.4 7.8 0.018 15.3 0.0 5.2 3 2 2 5 5 5 3 AAA domain AAA_18 PF13238.6 gi|332795777|ref|YP_004457277.1| - 9.9e-12 45.5 0.1 0.00013 22.6 0.0 3.1 3 1 0 3 3 2 2 AAA domain AAA_33 PF13671.6 gi|332795777|ref|YP_004457277.1| - 1.9e-11 44.3 0.0 1.4e-05 25.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_lid_3 PF17862.1 gi|332795777|ref|YP_004457277.1| - 2.6e-11 43.1 0.0 0.00018 21.2 0.0 2.9 2 0 0 2 2 2 2 AAA+ lid domain Vps4_C PF09336.10 gi|332795777|ref|YP_004457277.1| - 6e-10 39.0 2.2 3.4e-07 30.1 0.2 3.5 4 0 0 4 4 2 1 Vps4 C terminal oligomerisation domain AAA_24 PF13479.6 gi|332795777|ref|YP_004457277.1| - 6.3e-10 39.1 0.1 0.00036 20.3 0.0 3.2 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|332795777|ref|YP_004457277.1| - 1.8e-09 38.0 0.0 0.0046 17.3 0.0 4.0 4 0 0 4 4 4 2 RNA helicase IstB_IS21 PF01695.17 gi|332795777|ref|YP_004457277.1| - 3.7e-09 36.6 0.5 0.0022 17.8 0.0 3.3 4 1 0 4 4 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|332795777|ref|YP_004457277.1| - 3.1e-08 33.4 0.2 0.0013 18.3 0.1 3.3 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_28 PF13521.6 gi|332795777|ref|YP_004457277.1| - 4.1e-08 33.6 0.0 0.0049 17.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|332795777|ref|YP_004457277.1| - 6.1e-08 32.7 0.0 0.011 15.7 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Bac_DnaA PF00308.18 gi|332795777|ref|YP_004457277.1| - 1.3e-07 31.7 0.0 0.003 17.4 0.0 2.6 2 1 0 2 2 2 2 Bacterial dnaA protein AAA_17 PF13207.6 gi|332795777|ref|YP_004457277.1| - 2.2e-07 31.4 0.0 0.024 15.1 0.0 3.8 3 1 0 3 3 2 2 AAA domain Cytidylate_kin PF02224.18 gi|332795777|ref|YP_004457277.1| - 4.9e-07 29.7 0.0 0.035 13.8 0.0 2.6 2 0 0 2 2 2 2 Cytidylate kinase Sigma54_activ_2 PF14532.6 gi|332795777|ref|YP_004457277.1| - 5.1e-07 29.9 0.0 0.0026 17.9 0.0 2.7 2 1 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|332795777|ref|YP_004457277.1| - 6e-07 29.0 0.1 0.037 13.4 0.0 3.2 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI TniB PF05621.11 gi|332795777|ref|YP_004457277.1| - 8.7e-07 28.5 1.0 0.025 14.0 0.0 4.2 3 1 1 4 4 4 1 Bacterial TniB protein ABC_tran PF00005.27 gi|332795777|ref|YP_004457277.1| - 3.1e-06 27.8 0.1 0.1 13.1 0.0 2.8 2 0 0 2 2 2 2 ABC transporter SKI PF01202.22 gi|332795777|ref|YP_004457277.1| - 5.6e-06 26.6 0.0 0.14 12.2 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase Parvo_NS1 PF01057.17 gi|332795777|ref|YP_004457277.1| - 1.4e-05 24.4 0.2 0.053 12.6 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Sigma54_activat PF00158.26 gi|332795777|ref|YP_004457277.1| - 1.4e-05 24.9 0.2 0.56 9.9 0.1 3.4 2 1 0 2 2 2 2 Sigma-54 interaction domain Zeta_toxin PF06414.12 gi|332795777|ref|YP_004457277.1| - 2.1e-05 23.9 0.0 0.17 11.1 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_30 PF13604.6 gi|332795777|ref|YP_004457277.1| - 2.8e-05 23.9 2.6 0.12 12.1 0.1 3.5 4 1 0 4 4 3 2 AAA domain NB-ARC PF00931.22 gi|332795777|ref|YP_004457277.1| - 3.1e-05 23.3 0.0 0.14 11.4 0.0 3.6 3 1 1 4 4 4 1 NB-ARC domain AAA_3 PF07726.11 gi|332795777|ref|YP_004457277.1| - 4.5e-05 23.3 0.0 0.23 11.3 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_6 PF12774.7 gi|332795777|ref|YP_004457277.1| - 5.3e-05 22.4 0.0 0.087 11.8 0.0 2.3 2 0 0 2 2 2 2 Hydrolytic ATP binding site of dynein motor region AAA_11 PF13086.6 gi|332795777|ref|YP_004457277.1| - 6.7e-05 22.8 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|332795777|ref|YP_004457277.1| - 0.00013 21.9 0.1 1 9.2 0.0 3.3 2 2 0 2 2 2 2 Rad17 P-loop domain NACHT PF05729.12 gi|332795777|ref|YP_004457277.1| - 0.00028 20.8 2.4 2 8.3 0.0 3.7 3 1 1 4 4 3 1 NACHT domain PhoH PF02562.16 gi|332795777|ref|YP_004457277.1| - 0.0003 20.3 0.1 0.78 9.1 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein ATPase_2 PF01637.18 gi|332795777|ref|YP_004457277.1| - 0.00036 20.5 12.7 0.051 13.5 0.5 4.6 4 2 0 4 4 3 2 ATPase domain predominantly from Archaea CPT PF07931.12 gi|332795777|ref|YP_004457277.1| - 0.00039 20.3 0.0 0.49 10.2 0.0 2.7 2 1 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein IPT PF01745.16 gi|332795777|ref|YP_004457277.1| - 0.00076 18.9 0.1 1.1 8.5 0.0 2.5 2 0 0 2 2 2 2 Isopentenyl transferase PduV-EutP PF10662.9 gi|332795777|ref|YP_004457277.1| - 0.0014 18.4 0.0 1.2 8.9 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|332795777|ref|YP_004457277.1| - 0.0014 19.0 9.7 0.42 10.9 0.1 4.3 4 2 1 6 6 3 2 AAA domain DAP3 PF10236.9 gi|332795777|ref|YP_004457277.1| - 0.0016 17.7 0.2 1.8 7.7 0.0 2.9 3 0 0 3 3 3 1 Mitochondrial ribosomal death-associated protein 3 MMR_HSR1 PF01926.23 gi|332795777|ref|YP_004457277.1| - 0.0019 18.3 0.1 3 7.9 0.0 3.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|332795777|ref|YP_004457277.1| - 0.0021 17.2 0.0 0.8 8.7 0.0 2.5 2 0 0 2 2 2 1 Type II/IV secretion system protein NTPase_1 PF03266.15 gi|332795777|ref|YP_004457277.1| - 0.0023 17.9 5.9 0.96 9.3 0.0 4.3 4 1 1 5 5 3 1 NTPase KAP_NTPase PF07693.14 gi|332795777|ref|YP_004457277.1| - 0.0023 17.2 4.8 3.9 6.6 0.1 3.9 2 2 2 4 4 4 0 KAP family P-loop domain Cytidylate_kin2 PF13189.6 gi|332795777|ref|YP_004457277.1| - 0.0026 17.9 0.0 0.58 10.3 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_25 PF13481.6 gi|332795777|ref|YP_004457277.1| - 0.0035 17.0 8.3 1.2 8.7 0.1 4.1 2 2 1 4 4 4 1 AAA domain KTI12 PF08433.10 gi|332795777|ref|YP_004457277.1| - 0.0041 16.6 0.0 1.4 8.3 0.0 2.5 2 0 0 2 2 2 1 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|332795777|ref|YP_004457277.1| - 0.0049 16.8 1.5 1.3 8.9 0.0 3.4 4 0 0 4 4 3 1 RsgA GTPase Guanylate_kin PF00625.21 gi|332795777|ref|YP_004457277.1| - 0.0058 16.3 0.0 1.7 8.3 0.0 2.8 2 1 0 2 2 2 1 Guanylate kinase PIF1 PF05970.14 gi|332795777|ref|YP_004457277.1| - 0.0075 15.5 0.1 2.6 7.1 0.0 2.7 2 1 0 2 2 2 0 PIF1-like helicase AAA_29 PF13555.6 gi|332795777|ref|YP_004457277.1| - 0.011 15.5 0.5 2.3 8.0 0.0 2.6 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|332795777|ref|YP_004457277.1| - 0.014 14.1 0.1 2.4 6.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain AGT PF11440.8 gi|332795777|ref|YP_004457277.1| - 0.015 14.4 2.1 1.7 7.6 0.0 2.3 2 0 0 2 2 2 0 DNA alpha-glucosyltransferase Viral_helicase1 PF01443.18 gi|332795777|ref|YP_004457277.1| - 0.016 15.0 0.0 1.9 8.1 0.0 2.7 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|332795777|ref|YP_004457277.1| - 0.018 15.0 5.2 5.6 6.9 0.0 3.9 3 2 1 4 4 4 0 Type III restriction enzyme, res subunit ADK PF00406.22 gi|332795777|ref|YP_004457277.1| - 0.019 15.1 0.1 5.4 7.1 0.0 3.2 3 1 0 3 3 2 0 Adenylate kinase SRP54 PF00448.22 gi|332795777|ref|YP_004457277.1| - 0.02 14.5 1.6 6.5 6.3 0.0 3.7 3 1 0 3 3 3 0 SRP54-type protein, GTPase domain Roc PF08477.13 gi|332795777|ref|YP_004457277.1| - 0.021 15.0 0.0 14 5.9 0.0 3.0 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Phg_2220_C PF09524.10 gi|332795777|ref|YP_004457277.1| - 0.043 13.9 8.2 2.8 8.1 0.1 4.4 3 1 1 4 4 4 0 Conserved phage C-terminus (Phg_2220_C) DUF2075 PF09848.9 gi|332795777|ref|YP_004457277.1| - 0.043 13.0 0.0 1.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) 6PF2K PF01591.18 gi|332795777|ref|YP_004457277.1| - 0.046 13.0 0.0 1.7 7.9 0.0 2.7 2 0 0 2 2 2 0 6-phosphofructo-2-kinase Torsin PF06309.11 gi|332795777|ref|YP_004457277.1| - 0.05 13.7 0.0 7.4 6.7 0.0 2.6 2 0 0 2 2 2 0 Torsin SMC_N PF02463.19 gi|332795777|ref|YP_004457277.1| - 0.053 13.0 0.4 6.1 6.2 0.1 2.9 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|332795777|ref|YP_004457277.1| - 0.056 13.1 0.0 12 5.5 0.0 3.0 3 0 0 3 3 3 0 ATP synthase alpha/beta family, nucleotide-binding domain Hydin_ADK PF17213.3 gi|332795777|ref|YP_004457277.1| - 0.059 13.6 0.1 5.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain PPV_E1_C PF00519.17 gi|332795777|ref|YP_004457277.1| - 0.064 12.1 0.0 9.5 4.9 0.0 2.1 2 0 0 2 2 2 0 Papillomavirus helicase dNK PF01712.19 gi|332795777|ref|YP_004457277.1| - 0.067 13.0 0.1 2.9 7.7 0.0 2.7 2 0 0 2 2 2 0 Deoxynucleoside kinase APS_kinase PF01583.20 gi|332795777|ref|YP_004457277.1| - 0.12 12.2 0.1 5 7.0 0.0 2.4 2 0 0 2 2 2 0 Adenylylsulphate kinase Gtr1_RagA PF04670.12 gi|332795777|ref|YP_004457277.1| - 0.14 11.5 1.1 29 3.9 0.0 3.3 3 1 0 3 3 3 0 Gtr1/RagA G protein conserved region AAA_23 PF13476.6 gi|332795777|ref|YP_004457277.1| - 0.48 10.9 11.1 2.8 8.4 0.4 3.8 3 2 0 4 4 3 0 AAA domain AAA_21 PF13304.6 gi|332795777|ref|YP_004457277.1| - 1.1 9.0 12.3 15 5.3 0.2 4.4 3 2 2 5 5 4 0 AAA domain, putative AbiEii toxin, Type IV TA system ATPase PF06745.13 gi|332795777|ref|YP_004457277.1| - 1.2 8.4 14.4 3.9 6.8 0.1 4.7 3 2 2 5 5 5 0 KaiC DEAD PF00270.29 gi|332795777|ref|YP_004457277.1| - 2.2 8.0 4.9 32 4.2 0.0 3.6 2 2 0 4 4 3 0 DEAD/DEAH box helicase Pyr_redox_2 PF07992.14 gi|332795778|ref|YP_004457278.1| - 4.3e-56 190.3 0.0 6.4e-56 189.7 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332795778|ref|YP_004457278.1| - 2.5e-19 69.6 0.0 5.7e-19 68.4 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|332795778|ref|YP_004457278.1| - 1.2e-16 61.1 4.3 6.4e-16 58.7 0.1 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332795778|ref|YP_004457278.1| - 2.7e-14 53.1 0.8 1.4e-13 50.7 0.7 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|332795778|ref|YP_004457278.1| - 2.4e-07 30.2 0.0 0.0025 17.0 0.0 2.2 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|332795778|ref|YP_004457278.1| - 6.7e-07 28.7 2.9 8.1e-05 21.9 1.3 3.9 1 1 2 4 4 4 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|332795778|ref|YP_004457278.1| - 7.1e-07 28.9 0.0 4.7e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332795778|ref|YP_004457278.1| - 5.3e-05 22.5 2.9 0.00012 21.3 0.3 2.6 2 1 2 4 4 4 1 FAD binding domain NAD_binding_7 PF13241.6 gi|332795778|ref|YP_004457278.1| - 0.00019 21.8 0.2 0.1 13.1 0.0 3.0 3 0 0 3 3 3 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|332795778|ref|YP_004457278.1| - 0.00034 20.0 1.2 0.034 13.4 0.0 3.0 3 0 0 3 3 3 1 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|332795778|ref|YP_004457278.1| - 0.00043 19.4 0.0 0.0058 15.7 0.0 2.4 2 1 1 3 3 3 1 Lycopene cyclase protein Thi4 PF01946.17 gi|332795778|ref|YP_004457278.1| - 0.00074 18.8 0.3 0.0057 15.9 0.1 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|332795778|ref|YP_004457278.1| - 0.001 19.3 2.6 0.021 15.1 0.2 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|332795778|ref|YP_004457278.1| - 0.0013 17.6 5.3 0.19 10.4 0.4 3.5 3 1 1 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|332795778|ref|YP_004457278.1| - 0.0024 17.5 0.7 17 4.8 0.0 4.1 3 1 0 4 4 4 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.19 gi|332795778|ref|YP_004457278.1| - 0.0026 17.1 0.1 0.58 9.5 0.0 2.6 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|332795778|ref|YP_004457278.1| - 0.037 13.3 4.5 0.09 12.0 0.5 2.9 3 0 0 3 3 3 0 FAD binding domain XdhC_C PF13478.6 gi|332795778|ref|YP_004457278.1| - 0.04 14.4 0.0 2.4 8.7 0.0 2.4 2 0 0 2 2 2 0 XdhC Rossmann domain UDPG_MGDP_dh_N PF03721.14 gi|332795778|ref|YP_004457278.1| - 0.068 12.7 0.4 1.2 8.7 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FliG_C PF01706.16 gi|332795779|ref|YP_004457279.1| - 0.0051 17.0 3.4 0.05 13.8 0.2 2.2 2 0 0 2 2 2 1 FliG C-terminal domain Peptidase_M32 PF02074.15 gi|332795779|ref|YP_004457279.1| - 0.032 13.0 1.6 0.037 12.8 1.6 1.0 1 0 0 1 1 1 0 Carboxypeptidase Taq (M32) metallopeptidase DUF3420 PF11900.8 gi|332795779|ref|YP_004457279.1| - 0.044 13.9 0.2 0.14 12.4 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3420) TPR_21 PF09976.9 gi|332795779|ref|YP_004457279.1| - 0.068 12.9 1.0 0.13 12.0 0.5 1.5 1 1 0 1 1 1 0 Tetratricopeptide repeat-like domain FANCI_S2 PF14676.6 gi|332795779|ref|YP_004457279.1| - 0.23 11.8 2.6 0.33 11.2 2.6 1.3 1 1 0 1 1 1 0 FANCI solenoid 2 TPP_enzyme_C PF02775.21 gi|332795780|ref|YP_004457280.1| - 2.3e-29 102.1 0.1 3.6e-29 101.5 0.1 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|332795780|ref|YP_004457280.1| - 8.9e-26 89.8 0.4 1.8e-25 88.9 0.4 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal QCR10 PF09796.9 gi|332795780|ref|YP_004457280.1| - 0.012 15.6 0.0 0.026 14.6 0.0 1.5 1 0 0 1 1 1 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) Porphobil_deamC PF03900.15 gi|332795780|ref|YP_004457280.1| - 0.11 12.8 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 Porphobilinogen deaminase, C-terminal domain POR_N PF01855.19 gi|332795781|ref|YP_004457281.1| - 5.4e-59 199.7 0.1 8e-59 199.2 0.1 1.2 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|332795781|ref|YP_004457281.1| - 3e-31 108.9 0.4 1.1e-30 107.1 0.1 2.1 3 0 0 3 3 3 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|332795781|ref|YP_004457281.1| - 2.2e-05 24.7 0.0 9.4e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|332795781|ref|YP_004457281.1| - 0.00029 20.5 0.4 0.0012 18.5 0.3 2.1 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|332795781|ref|YP_004457281.1| - 0.031 14.1 0.0 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Transketolase, C-terminal domain Radical_SAM PF04055.21 gi|332795781|ref|YP_004457281.1| - 0.15 12.5 0.2 1.3 9.4 0.1 2.5 2 1 0 2 2 2 0 Radical SAM superfamily Cupin_2 PF07883.11 gi|332795782|ref|YP_004457282.1| - 0.019 14.6 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Cupin domain DUF3211 PF11485.8 gi|332795783|ref|YP_004457283.1| - 5.9e-49 165.8 0.6 6.6e-49 165.6 0.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) DUF4369 PF14289.6 gi|332795783|ref|YP_004457283.1| - 0.017 15.6 0.0 0.097 13.2 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4369) TFIIB PF00382.19 gi|332795784|ref|YP_004457284.1| - 4.3e-36 122.8 7.8 1.2e-18 66.9 0.8 2.5 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|332795784|ref|YP_004457284.1| - 1.5e-10 40.4 0.2 2.5e-10 39.7 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|332795784|ref|YP_004457284.1| - 6.1e-05 23.1 0.0 0.068 13.3 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain Cyclin_N PF00134.23 gi|332795784|ref|YP_004457284.1| - 0.00068 19.4 0.3 0.97 9.2 0.0 2.2 2 0 0 2 2 2 2 Cyclin, N-terminal domain HARE-HTH PF05066.13 gi|332795784|ref|YP_004457284.1| - 0.0017 18.7 0.1 1.3 9.5 0.0 2.5 2 0 0 2 2 2 2 HB1, ASXL, restriction endonuclease HTH domain RB_B PF01857.20 gi|332795784|ref|YP_004457284.1| - 0.0079 16.2 0.1 0.033 14.2 0.0 1.9 1 1 0 2 2 2 1 Retinoblastoma-associated protein B domain Sigma70_r4 PF04545.16 gi|332795784|ref|YP_004457284.1| - 0.019 14.5 1.2 0.12 11.9 1.1 2.6 1 1 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|332795784|ref|YP_004457284.1| - 0.026 14.2 5.4 0.85 9.3 0.1 3.7 3 1 1 4 4 4 0 Sigma-70, region 4 TFIIB_C_1 PF18542.1 gi|332795784|ref|YP_004457284.1| - 0.053 13.6 1.2 0.68 10.0 0.1 2.5 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 HTH_AsnC-type PF13404.6 gi|332795784|ref|YP_004457284.1| - 0.12 12.3 4.5 0.23 11.3 0.4 3.4 3 1 1 4 4 4 0 AsnC-type helix-turn-helix domain UPF0253 PF06786.12 gi|332795784|ref|YP_004457284.1| - 0.17 12.2 1.1 0.85 10.0 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) HTH_23 PF13384.6 gi|332795784|ref|YP_004457284.1| - 0.19 11.5 4.4 1.4 8.8 1.0 3.6 3 1 0 3 3 3 0 Homeodomain-like domain DUF417 PF04224.12 gi|332795786|ref|YP_004457286.1| - 0.0012 18.4 0.2 0.0013 18.3 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF417 DUF4181 PF13789.6 gi|332795786|ref|YP_004457286.1| - 0.0018 18.6 0.9 0.0022 18.3 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4181) PRA1 PF03208.19 gi|332795786|ref|YP_004457286.1| - 0.022 14.4 0.2 0.25 11.0 0.2 1.9 2 0 0 2 2 2 0 PRA1 family protein E1-E2_ATPase PF00122.20 gi|332795786|ref|YP_004457286.1| - 0.025 14.1 0.1 0.026 14.0 0.1 1.0 1 0 0 1 1 1 0 E1-E2 ATPase AAA_31 PF13614.6 gi|332795787|ref|YP_004457287.1| - 6.7e-11 42.4 0.0 0.0005 20.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain CbiA PF01656.23 gi|332795787|ref|YP_004457287.1| - 0.0011 19.0 0.0 0.0012 18.9 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|332795787|ref|YP_004457287.1| - 0.0012 18.4 0.0 0.0057 16.1 0.0 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MeaB PF03308.16 gi|332795787|ref|YP_004457287.1| - 0.0019 17.2 0.0 0.0027 16.7 0.0 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_NifH PF00142.18 gi|332795787|ref|YP_004457287.1| - 0.0092 15.5 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|332795787|ref|YP_004457287.1| - 0.019 14.1 0.0 0.29 10.3 0.0 2.2 2 0 0 2 2 2 0 Anion-transporting ATPase MipZ PF09140.11 gi|332795787|ref|YP_004457287.1| - 0.057 12.7 0.0 0.11 11.7 0.0 1.4 1 1 0 1 1 1 0 ATPase MipZ CBP_BcsQ PF06564.12 gi|332795787|ref|YP_004457287.1| - 0.062 12.8 0.0 1.3 8.5 0.0 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ABC2_membrane PF01061.24 gi|332795788|ref|YP_004457288.1| - 4.3e-13 49.2 26.9 4.3e-13 49.2 26.9 1.8 2 1 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|332795788|ref|YP_004457288.1| - 0.00023 20.4 33.7 0.00023 20.4 33.7 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein DUF1290 PF06947.12 gi|332795788|ref|YP_004457288.1| - 1.4 9.1 8.6 0.24 11.5 2.8 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1290) ABC_tran PF00005.27 gi|332795789|ref|YP_004457289.1| - 5.3e-28 98.3 0.0 9.1e-28 97.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332795789|ref|YP_004457289.1| - 5.3e-13 49.4 2.7 6.2e-07 29.5 0.0 2.7 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332795789|ref|YP_004457289.1| - 7.7e-05 22.6 4.7 0.00084 19.2 0.5 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|332795789|ref|YP_004457289.1| - 0.0002 21.0 0.3 0.00039 20.1 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|332795789|ref|YP_004457289.1| - 0.00042 20.3 0.0 0.00086 19.3 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|332795789|ref|YP_004457289.1| - 0.00076 20.0 1.5 0.0019 18.7 1.5 1.9 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|332795789|ref|YP_004457289.1| - 0.002 17.6 0.4 0.27 10.6 0.1 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|332795789|ref|YP_004457289.1| - 0.0022 17.9 0.4 0.0051 16.7 0.1 1.7 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|332795789|ref|YP_004457289.1| - 0.006 16.9 0.5 0.085 13.1 0.1 2.5 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|332795789|ref|YP_004457289.1| - 0.012 15.9 0.1 0.027 14.9 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|332795789|ref|YP_004457289.1| - 0.02 14.7 0.0 0.038 13.7 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF4162 PF13732.6 gi|332795789|ref|YP_004457289.1| - 0.04 14.6 1.8 0.36 11.6 1.1 2.7 2 1 0 2 2 1 0 Domain of unknown function (DUF4162) AAA_13 PF13166.6 gi|332795789|ref|YP_004457289.1| - 0.048 12.3 0.1 0.093 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|332795789|ref|YP_004457289.1| - 0.083 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|332795789|ref|YP_004457289.1| - 0.1 12.3 2.0 0.67 9.6 0.3 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|332795789|ref|YP_004457289.1| - 0.12 12.5 0.1 0.92 9.7 0.0 2.1 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|332795789|ref|YP_004457289.1| - 0.13 12.3 1.0 0.9 9.6 1.0 2.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase SBBP PF06739.11 gi|332795790|ref|YP_004457290.1| - 0.14 12.2 0.3 0.25 11.4 0.3 1.4 1 0 0 1 1 1 0 Beta-propeller repeat AA_permease_2 PF13520.6 gi|332795791|ref|YP_004457291.1| - 5.1e-32 111.2 66.3 6.3e-32 110.9 66.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795791|ref|YP_004457291.1| - 2.6e-06 26.3 55.3 3.5e-06 25.9 55.3 1.1 1 0 0 1 1 1 1 Amino acid permease TrbE PF11100.8 gi|332795791|ref|YP_004457291.1| - 7.9 6.8 11.3 1.5 9.1 0.1 3.7 3 0 0 3 3 3 0 Conjugal transfer protein TrbE PMT_2 PF13231.6 gi|332795792|ref|YP_004457292.1| - 3.6e-09 37.0 14.3 3.6e-09 37.0 14.3 2.7 3 1 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase CbiA PF01656.23 gi|332795793|ref|YP_004457293.1| - 4.2e-12 46.2 0.0 6e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|332795793|ref|YP_004457293.1| - 4e-08 33.4 0.0 8.1e-08 32.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|332795793|ref|YP_004457293.1| - 1e-06 28.4 0.3 2e-06 27.5 0.1 1.6 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|332795793|ref|YP_004457293.1| - 4.6e-05 22.7 2.2 0.00041 19.6 0.1 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase PPL4 PF18188.1 gi|332795793|ref|YP_004457293.1| - 0.016 15.1 0.2 0.028 14.4 0.2 1.5 1 1 0 1 1 1 0 Prim-pol 4 CLP1_P PF16575.5 gi|332795793|ref|YP_004457293.1| - 0.048 13.4 0.2 0.24 11.2 0.0 2.0 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_26 PF13500.6 gi|332795793|ref|YP_004457293.1| - 0.07 13.0 1.5 9.9 5.9 0.4 3.0 3 0 0 3 3 3 0 AAA domain DUF1132 PF06575.12 gi|332795793|ref|YP_004457293.1| - 0.095 13.1 0.3 0.25 11.8 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1132) MMPL PF03176.15 gi|332795794|ref|YP_004457294.1| - 6.4e-61 206.1 34.1 3e-31 108.6 15.0 2.5 2 1 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|332795794|ref|YP_004457294.1| - 3.1e-06 27.1 19.0 0.00016 21.6 5.7 2.9 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation DUF3671 PF12420.8 gi|332795794|ref|YP_004457294.1| - 0.02 14.9 0.6 0.02 14.9 0.6 5.6 5 1 0 6 6 6 0 Protein of unknown function ABC2_membrane_2 PF12679.7 gi|332795795|ref|YP_004457295.1| - 9.5e-13 48.1 31.3 1.5e-12 47.4 31.3 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|332795795|ref|YP_004457295.1| - 1.4e-05 24.4 43.1 0.00029 20.1 44.7 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|332795795|ref|YP_004457295.1| - 0.00018 21.6 16.3 0.00018 21.6 16.3 2.6 1 1 2 3 3 3 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332795796|ref|YP_004457296.1| - 7.9e-30 104.2 0.0 1.6e-29 103.1 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332795796|ref|YP_004457296.1| - 2.8e-11 43.8 0.0 1.9e-06 27.9 0.2 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|332795796|ref|YP_004457296.1| - 0.00016 22.3 5.3 0.00045 20.8 5.3 1.9 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|332795796|ref|YP_004457296.1| - 0.00021 21.9 3.0 0.00028 21.5 1.4 2.0 2 0 0 2 2 1 1 Domain of unknown function (DUF4162) NTPase_1 PF03266.15 gi|332795796|ref|YP_004457296.1| - 0.00031 20.7 2.6 1.6 8.6 0.1 3.2 3 0 0 3 3 3 2 NTPase AAA_29 PF13555.6 gi|332795796|ref|YP_004457296.1| - 0.00051 19.7 0.1 0.0012 18.6 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|332795796|ref|YP_004457296.1| - 0.0014 18.1 1.3 0.059 12.8 0.2 2.5 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|332795796|ref|YP_004457296.1| - 0.0014 18.6 3.0 0.053 13.4 0.1 2.6 1 1 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|332795796|ref|YP_004457296.1| - 0.0029 17.6 0.2 1.1 9.3 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_15 PF13175.6 gi|332795796|ref|YP_004457296.1| - 0.0044 16.8 5.5 0.45 10.2 5.5 2.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_27 PF13514.6 gi|332795796|ref|YP_004457296.1| - 0.0049 16.5 0.2 0.013 15.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|332795796|ref|YP_004457296.1| - 0.0073 16.6 0.3 0.067 13.5 0.3 2.4 1 1 1 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|332795796|ref|YP_004457296.1| - 0.011 15.4 0.1 0.15 11.8 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|332795796|ref|YP_004457296.1| - 0.013 15.4 0.1 0.051 13.5 0.1 1.9 2 0 0 2 2 2 0 RsgA GTPase Rad17 PF03215.15 gi|332795796|ref|YP_004457296.1| - 0.046 13.6 0.2 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_24 PF13479.6 gi|332795796|ref|YP_004457296.1| - 0.075 12.7 1.0 0.91 9.2 0.0 2.5 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|332795796|ref|YP_004457296.1| - 0.096 13.1 1.4 0.78 10.2 1.4 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|332795796|ref|YP_004457296.1| - 0.099 13.0 0.0 0.15 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ABC2_membrane PF01061.24 gi|332795797|ref|YP_004457297.1| - 0.00085 18.8 23.0 0.00085 18.8 23.0 1.8 1 1 1 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|332795797|ref|YP_004457297.1| - 6.6 5.7 41.6 0.022 13.9 30.8 1.8 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332795798|ref|YP_004457298.1| - 7.1e-24 84.9 0.0 1.2e-23 84.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332795798|ref|YP_004457298.1| - 3.1e-12 46.9 0.1 3.3e-06 27.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|332795798|ref|YP_004457298.1| - 1.5e-05 25.6 0.1 2.6e-05 24.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|332795798|ref|YP_004457298.1| - 4.6e-05 23.0 0.1 0.02 14.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|332795798|ref|YP_004457298.1| - 8.6e-05 22.5 0.2 0.0003 20.7 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_15 PF13175.6 gi|332795798|ref|YP_004457298.1| - 0.00014 21.7 0.0 0.0026 17.5 0.1 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|332795798|ref|YP_004457298.1| - 0.0019 17.9 0.1 0.0033 17.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.25 gi|332795798|ref|YP_004457298.1| - 0.0025 17.5 0.1 0.0036 17.0 0.1 1.4 1 1 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 gi|332795798|ref|YP_004457298.1| - 0.0062 15.3 0.0 0.021 13.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|332795798|ref|YP_004457298.1| - 0.011 15.4 0.1 0.04 13.6 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|332795798|ref|YP_004457298.1| - 0.031 14.6 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|332795798|ref|YP_004457298.1| - 0.069 13.6 0.1 0.65 10.4 0.0 2.4 3 0 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) MukB PF04310.12 gi|332795798|ref|YP_004457298.1| - 0.12 12.1 0.2 0.32 10.8 0.1 1.6 2 0 0 2 2 2 0 MukB N-terminal NACHT PF05729.12 gi|332795798|ref|YP_004457298.1| - 0.15 11.9 0.1 0.33 10.9 0.1 1.6 1 0 0 1 1 1 0 NACHT domain DUF3584 PF12128.8 gi|332795798|ref|YP_004457298.1| - 0.3 8.5 0.4 0.42 8.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Oxidored_molyb PF00174.19 gi|332795799|ref|YP_004457299.1| - 3.4e-38 131.0 0.0 4.1e-38 130.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain PhaC_N PF07167.13 gi|332795801|ref|YP_004457301.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Peptidase_M10 PF00413.24 gi|332795801|ref|YP_004457301.1| - 0.061 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Matrixin HNH_3 PF13392.6 gi|332795801|ref|YP_004457301.1| - 0.11 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 HNH endonuclease DoxA PF07680.11 gi|332795803|ref|YP_004457303.1| - 3.5e-36 124.0 0.2 4.3e-36 123.7 0.2 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA DoxD PF04173.13 gi|332795804|ref|YP_004457304.1| - 5.3e-70 234.7 1.3 6e-70 234.5 1.3 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|332795804|ref|YP_004457304.1| - 2.8e-08 34.2 8.6 9.5e-08 32.5 8.6 1.9 1 1 0 1 1 1 1 DoxX MFS_1 PF07690.16 gi|332795805|ref|YP_004457305.1| - 1.1e-20 73.9 49.2 4.3e-20 71.9 38.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332795805|ref|YP_004457305.1| - 1.9e-11 43.5 9.7 1.9e-11 43.5 9.7 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter Peptidase_M61 PF05299.12 gi|332795807|ref|YP_004457307.1| - 2.6e-36 124.6 0.2 4.2e-36 123.9 0.2 1.3 1 0 0 1 1 1 1 M61 glycyl aminopeptidase Peptidase_M61_N PF17899.1 gi|332795807|ref|YP_004457307.1| - 2.2e-16 60.4 0.0 1.1e-15 58.1 0.0 2.0 1 1 0 1 1 1 1 Peptidase M61 N-terminal domain PDZ_6 PF17820.1 gi|332795807|ref|YP_004457307.1| - 3.5e-07 30.0 0.0 9.6e-07 28.6 0.0 1.8 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|332795807|ref|YP_004457307.1| - 0.00017 21.9 1.4 0.0015 18.8 0.3 2.8 2 1 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|332795807|ref|YP_004457307.1| - 0.0034 17.7 0.5 0.027 14.8 0.1 2.4 2 0 0 2 2 2 1 PDZ domain Peptidase_M9 PF01752.17 gi|332795807|ref|YP_004457307.1| - 0.028 13.7 0.2 0.048 12.9 0.2 1.4 1 0 0 1 1 1 0 Collagenase Peptidase_M1 PF01433.20 gi|332795807|ref|YP_004457307.1| - 0.17 11.4 1.4 1.3 8.5 1.1 2.2 1 1 0 1 1 1 0 Peptidase family M1 domain SpoIIM PF01944.17 gi|332795808|ref|YP_004457308.1| - 4.6e-10 39.7 9.4 4.6e-10 39.7 9.4 1.4 2 0 0 2 2 2 1 Stage II sporulation protein M Epimerase PF01370.21 gi|332795809|ref|YP_004457309.1| - 7.3e-09 35.4 0.0 1.1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|332795809|ref|YP_004457309.1| - 9.6e-06 25.9 0.0 1.6e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_4 PF07993.12 gi|332795809|ref|YP_004457309.1| - 6.2e-05 22.3 0.0 8.8e-05 21.8 0.0 1.4 1 1 0 1 1 1 1 Male sterility protein TrkA_N PF02254.18 gi|332795809|ref|YP_004457309.1| - 0.024 14.9 0.0 0.036 14.3 0.0 1.2 1 0 0 1 1 1 0 TrkA-N domain RmlD_sub_bind PF04321.17 gi|332795809|ref|YP_004457309.1| - 0.096 11.8 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain TrkA_N PF02254.18 gi|332795810|ref|YP_004457310.1| - 2.1e-15 57.0 0.7 3.6e-15 56.2 0.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|332795810|ref|YP_004457310.1| - 0.0014 18.4 0.1 0.0057 16.5 0.0 2.1 2 0 0 2 2 2 1 TrkA-C domain MCR_gamma PF02240.16 gi|332795810|ref|YP_004457310.1| - 0.013 14.7 0.0 0.021 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit Ion_trans_2 PF07885.16 gi|332795810|ref|YP_004457310.1| - 0.07 13.1 8.7 0.13 12.3 8.7 1.4 1 0 0 1 1 1 0 Ion channel Hydantoinase_B PF02538.14 gi|332795811|ref|YP_004457311.1| - 9.9e-179 595.0 0.0 1.1e-178 594.9 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Spuma_A9PTase PF03539.14 gi|332795811|ref|YP_004457311.1| - 0.12 12.5 0.1 0.23 11.6 0.1 1.3 1 0 0 1 1 1 0 Spumavirus aspartic protease (A9) Hydantoinase_A PF01968.18 gi|332795812|ref|YP_004457312.1| - 2.2e-94 316.0 4.4 8.1e-94 314.1 0.1 2.1 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|332795812|ref|YP_004457312.1| - 2.9e-51 173.7 0.1 5.5e-51 172.8 0.1 1.5 1 0 0 1 1 1 1 Hydantoinase/oxoprolinase N-terminal region MutS_IV PF05190.18 gi|332795812|ref|YP_004457312.1| - 0.027 14.8 0.5 0.072 13.4 0.5 1.7 1 0 0 1 1 1 0 MutS family domain IV BcrAD_BadFG PF01869.20 gi|332795812|ref|YP_004457312.1| - 0.029 13.9 0.0 3 7.3 0.0 2.2 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|332795812|ref|YP_004457312.1| - 0.051 13.1 0.1 0.19 11.3 0.0 1.9 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, N-terminal domain 5-FTHF_cyc-lig PF01812.20 gi|332795813|ref|YP_004457313.1| - 3.2e-32 111.9 0.0 4.1e-32 111.6 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Glyco_trans_2_3 PF13632.6 gi|332795814|ref|YP_004457314.1| - 1.3e-27 97.0 0.1 1.3e-27 97.0 0.1 2.6 3 0 0 3 3 3 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|332795814|ref|YP_004457314.1| - 1e-23 84.5 0.0 1.3e-23 84.1 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|332795814|ref|YP_004457314.1| - 6.5e-19 68.4 0.0 1e-18 67.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|332795814|ref|YP_004457314.1| - 1.5e-16 60.3 0.0 2.2e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|332795814|ref|YP_004457314.1| - 0.00021 20.0 9.0 0.00074 18.1 5.5 2.5 1 1 1 2 2 2 1 Cellulose synthase EMP70 PF02990.16 gi|332795814|ref|YP_004457314.1| - 0.00051 18.8 2.1 0.00051 18.8 2.1 2.2 2 0 0 2 2 2 1 Endomembrane protein 70 Glyco_tranf_2_2 PF10111.9 gi|332795814|ref|YP_004457314.1| - 0.025 14.0 0.1 0.048 13.1 0.1 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 CbiA PF01656.23 gi|332795815|ref|YP_004457315.1| - 4.5e-11 42.9 0.0 8.5e-11 42.0 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|332795815|ref|YP_004457315.1| - 1.7e-10 41.1 1.0 1.7e-10 41.1 1.0 3.0 2 2 1 3 3 3 1 AAA domain ParA PF10609.9 gi|332795815|ref|YP_004457315.1| - 1.9e-08 34.1 0.9 4.3e-08 32.9 0.9 1.5 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|332795815|ref|YP_004457315.1| - 0.0001 21.6 0.2 0.0001 21.6 0.2 2.2 3 0 0 3 3 3 1 Anion-transporting ATPase SRP54 PF00448.22 gi|332795815|ref|YP_004457315.1| - 0.00026 20.7 0.2 0.97 9.0 0.1 3.2 3 1 1 4 4 4 2 SRP54-type protein, GTPase domain CBP_BcsQ PF06564.12 gi|332795815|ref|YP_004457315.1| - 0.00068 19.2 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|332795815|ref|YP_004457315.1| - 0.00088 18.8 1.1 0.0044 16.5 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_18 PF13238.6 gi|332795815|ref|YP_004457315.1| - 0.007 16.9 0.3 1.9 9.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain ATPase_2 PF01637.18 gi|332795815|ref|YP_004457315.1| - 0.012 15.5 4.0 0.012 15.5 4.0 2.1 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|332795815|ref|YP_004457315.1| - 0.03 14.0 0.4 0.29 10.9 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|332795815|ref|YP_004457315.1| - 0.037 14.4 0.0 11 6.4 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|332795815|ref|YP_004457315.1| - 0.041 14.2 0.2 2.8 8.2 0.0 3.1 2 2 0 2 2 2 0 AAA domain cobW PF02492.19 gi|332795815|ref|YP_004457315.1| - 0.057 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CLP1_P PF16575.5 gi|332795815|ref|YP_004457315.1| - 0.11 12.3 0.3 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DEAD PF00270.29 gi|332795816|ref|YP_004457316.1| - 2.4e-16 60.0 0.1 7.7e-16 58.4 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332795816|ref|YP_004457316.1| - 2e-13 50.6 0.2 1.4e-12 47.9 0.1 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332795816|ref|YP_004457316.1| - 1.4e-08 35.0 0.7 9.6e-08 32.2 0.0 2.5 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|332795816|ref|YP_004457316.1| - 1.1e-05 25.7 0.0 3.5e-05 24.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|332795816|ref|YP_004457316.1| - 7.1e-05 23.2 0.0 0.48 10.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain Zot PF05707.12 gi|332795816|ref|YP_004457316.1| - 0.0024 17.5 0.0 0.0044 16.7 0.0 1.4 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DEAD_2 PF06733.15 gi|332795816|ref|YP_004457316.1| - 0.014 15.0 0.0 0.037 13.7 0.0 1.6 2 0 0 2 2 2 0 DEAD_2 SNF2_N PF00176.23 gi|332795816|ref|YP_004457316.1| - 0.021 13.5 0.0 0.032 13.0 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain UvrD-helicase PF00580.21 gi|332795816|ref|YP_004457316.1| - 0.031 13.8 0.1 0.73 9.3 0.1 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain PhoH PF02562.16 gi|332795816|ref|YP_004457316.1| - 0.046 13.2 0.0 0.12 11.8 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein DUF2075 PF09848.9 gi|332795816|ref|YP_004457316.1| - 0.065 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_7 PF12775.7 gi|332795816|ref|YP_004457316.1| - 0.11 12.0 0.1 0.86 9.1 0.0 2.3 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|332795816|ref|YP_004457316.1| - 0.25 11.1 0.0 0.49 10.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain TRCF PF03461.15 gi|332795816|ref|YP_004457316.1| - 1.6 9.2 4.8 72 3.9 0.0 3.7 4 0 0 4 4 4 0 TRCF domain Peptidase_S9 PF00326.21 gi|332795817|ref|YP_004457317.1| - 1.5e-49 168.3 0.1 2.3e-49 167.8 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|332795817|ref|YP_004457317.1| - 3e-07 30.3 0.1 0.00065 19.4 0.2 2.5 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|332795817|ref|YP_004457317.1| - 1.7e-06 27.8 0.1 1.4e-05 24.8 0.1 2.0 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|332795817|ref|YP_004457317.1| - 8.8e-06 25.5 2.0 0.0003 20.5 1.4 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|332795817|ref|YP_004457317.1| - 5.8e-05 22.5 0.1 0.091 12.0 0.0 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 PhoPQ_related PF10142.9 gi|332795817|ref|YP_004457317.1| - 0.0017 17.1 0.0 0.0026 16.5 0.0 1.2 1 0 0 1 1 1 1 PhoPQ-activated pathogenicity-related protein DUF5050 PF16472.5 gi|332795817|ref|YP_004457317.1| - 0.002 17.5 0.5 0.44 9.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF5050) DUF2920 PF11144.8 gi|332795817|ref|YP_004457317.1| - 0.0028 16.9 0.1 0.016 14.4 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2920) FSH1 PF03959.13 gi|332795817|ref|YP_004457317.1| - 0.021 14.5 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_2 PF02230.16 gi|332795817|ref|YP_004457317.1| - 0.06 13.1 0.1 0.27 11.0 0.0 2.0 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase UPF0227 PF05728.12 gi|332795817|ref|YP_004457317.1| - 0.091 12.7 0.0 0.21 11.5 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) Abhydrolase_6 PF12697.7 gi|332795817|ref|YP_004457317.1| - 0.14 12.8 0.0 0.19 12.3 0.0 1.2 1 0 0 1 1 1 0 Alpha/beta hydrolase family DUF3185 PF11381.8 gi|332795818|ref|YP_004457318.1| - 0.046 13.7 0.1 0.046 13.7 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF202 PF02656.15 gi|332795818|ref|YP_004457318.1| - 0.067 13.7 2.5 3.9 8.0 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF202) Phage_holin_3_6 PF07332.11 gi|332795818|ref|YP_004457318.1| - 0.26 11.3 3.6 0.78 9.8 1.1 2.0 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2371 PF10177.9 gi|332795818|ref|YP_004457318.1| - 0.28 11.4 2.4 4.8 7.4 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) ASFV_J13L PF05568.11 gi|332795818|ref|YP_004457318.1| - 2.2 8.0 6.3 0.33 10.7 0.1 2.1 1 1 0 2 2 2 0 African swine fever virus J13L protein UDG PF03167.19 gi|332795819|ref|YP_004457319.1| - 2.3e-34 118.6 0.0 2.9e-34 118.3 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily RmlD_sub_bind PF04321.17 gi|332795820|ref|YP_004457320.1| - 4.2e-21 75.3 0.0 5.6e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|332795820|ref|YP_004457320.1| - 1e-06 28.4 0.2 1.9e-06 27.6 0.2 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family AbiJ_NTD5 PF18865.1 gi|332795821|ref|YP_004457321.1| - 0.022 14.6 2.2 0.25 11.2 0.5 2.7 2 1 1 3 3 3 0 AbiJ N-terminal domain 5 Parvo_NS1 PF01057.17 gi|332795821|ref|YP_004457321.1| - 0.14 11.2 0.5 3.3 6.7 0.2 2.5 1 1 1 2 2 2 0 Parvovirus non-structural protein NS1 FF PF01846.19 gi|332795821|ref|YP_004457321.1| - 3.5 7.9 5.7 4.8 7.4 0.0 3.1 4 0 0 4 4 4 0 FF domain SOR PF07682.11 gi|332795822|ref|YP_004457322.1| - 6.2e-144 478.4 0.8 7e-144 478.3 0.8 1.0 1 0 0 1 1 1 1 Sulphur oxygenase reductase ABM PF03992.16 gi|332795822|ref|YP_004457322.1| - 1.4e-06 28.3 0.3 0.035 14.2 0.0 3.3 3 1 0 3 3 3 3 Antibiotic biosynthesis monooxygenase EamA PF00892.20 gi|332795823|ref|YP_004457323.1| - 3.1e-35 121.3 34.1 1.1e-17 64.4 12.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|332795823|ref|YP_004457323.1| - 0.0016 17.8 15.2 0.0027 17.1 15.2 1.4 1 0 0 1 1 1 1 Triose-phosphate Transporter family RseC_MucC PF04246.12 gi|332795823|ref|YP_004457323.1| - 0.019 14.9 0.8 0.019 14.9 0.8 3.5 2 1 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC PsbW PF07123.12 gi|332795823|ref|YP_004457323.1| - 0.25 11.4 1.2 0.6 10.1 1.2 1.6 1 0 0 1 1 1 0 Photosystem II reaction centre W protein (PsbW) zinc_ribbon_2 PF13240.6 gi|332795824|ref|YP_004457324.1| - 1e-17 63.2 19.0 8.6e-09 34.8 6.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332795824|ref|YP_004457324.1| - 2e-13 49.2 16.1 1.2e-06 27.7 5.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|332795824|ref|YP_004457324.1| - 7.2e-12 45.1 11.5 1.5e-11 44.1 11.5 1.6 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|332795824|ref|YP_004457324.1| - 1.1e-06 29.3 9.3 0.00014 22.5 0.7 2.3 2 0 0 2 2 2 2 zinc-ribbon family UPF0547 PF10571.9 gi|332795824|ref|YP_004457324.1| - 0.00011 22.2 14.1 0.0038 17.3 2.9 2.5 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.11 gi|332795824|ref|YP_004457324.1| - 0.00048 19.7 11.4 0.077 12.7 0.1 3.7 2 1 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-tcix PF14952.6 gi|332795824|ref|YP_004457324.1| - 0.0012 18.5 3.5 0.0012 18.5 3.5 2.9 2 1 1 3 3 3 1 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.18 gi|332795824|ref|YP_004457324.1| - 0.0015 17.8 2.2 0.0015 17.8 2.2 1.9 2 0 0 2 2 1 1 Zn-finger in Ran binding protein and others PolC_DP2 PF03833.13 gi|332795824|ref|YP_004457324.1| - 0.058 11.3 4.9 0.071 11.0 4.9 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DHHC PF01529.20 gi|332795824|ref|YP_004457324.1| - 0.077 13.1 4.6 2.4 8.3 0.5 2.5 1 1 1 2 2 2 0 DHHC palmitoyltransferase Nudix_N_2 PF14803.6 gi|332795824|ref|YP_004457324.1| - 0.14 12.1 0.2 0.14 12.1 0.2 3.9 3 1 0 3 3 3 0 Nudix N-terminal zinc-ribbons_6 PF07191.12 gi|332795824|ref|YP_004457324.1| - 0.14 12.1 7.6 2.1 8.4 6.5 2.3 1 1 1 2 2 2 0 zinc-ribbons zf-HIT PF04438.16 gi|332795824|ref|YP_004457324.1| - 0.27 11.2 13.2 0.19 11.6 7.4 2.9 2 1 1 3 3 3 0 HIT zinc finger zf-CHY PF05495.12 gi|332795824|ref|YP_004457324.1| - 0.38 11.3 6.8 1.3 9.5 0.7 2.4 1 1 1 2 2 2 0 CHY zinc finger HypA PF01155.19 gi|332795824|ref|YP_004457324.1| - 0.49 10.4 9.7 0.47 10.5 1.3 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|332795824|ref|YP_004457324.1| - 1.3 9.2 12.0 1.1 9.4 1.5 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_5 PF13719.6 gi|332795824|ref|YP_004457324.1| - 1.5 8.7 7.5 4.8 7.0 0.5 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-C6H2 PF15801.5 gi|332795824|ref|YP_004457324.1| - 2.2 8.6 10.1 3.4 8.0 6.1 2.2 1 1 1 2 2 2 0 zf-MYND-like zinc finger, mRNA-binding TerY_C PF15616.6 gi|332795824|ref|YP_004457324.1| - 2.6 8.1 8.0 7.6 6.7 8.0 1.8 1 0 0 1 1 1 0 TerY-C metal binding domain Prok-RING_1 PF14446.6 gi|332795824|ref|YP_004457324.1| - 4.2 7.4 13.3 67 3.5 8.1 2.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf_UBZ PF18439.1 gi|332795824|ref|YP_004457324.1| - 4.2 7.0 10.6 9.3 5.9 0.2 3.8 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger OrfB_Zn_ribbon PF07282.11 gi|332795824|ref|YP_004457324.1| - 4.7 7.2 10.1 2.1e+02 1.9 0.3 3.5 2 1 2 4 4 4 0 Putative transposase DNA-binding domain Mu-like_Com PF10122.9 gi|332795824|ref|YP_004457324.1| - 4.8 6.7 9.1 0.69 9.4 3.2 2.4 2 1 1 3 3 3 0 Mu-like prophage protein Com zf-C3HC4_3 PF13920.6 gi|332795824|ref|YP_004457324.1| - 7.6 6.5 9.0 0.31 10.9 0.5 2.7 1 1 2 3 3 3 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_4 PF13717.6 gi|332795824|ref|YP_004457324.1| - 9.9 6.2 12.0 5.9 6.9 0.6 3.4 3 1 0 3 3 3 0 zinc-ribbon domain SNARE_assoc PF09335.11 gi|332795825|ref|YP_004457325.1| - 3.2e-19 69.6 5.5 3.2e-19 69.6 5.5 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein MFS_1 PF07690.16 gi|332795826|ref|YP_004457326.1| - 7.7e-25 87.6 49.3 5.5e-13 48.6 15.4 3.0 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0126 PF03458.13 gi|332795826|ref|YP_004457326.1| - 0.075 12.9 10.1 0.11 12.4 0.1 3.4 3 0 0 3 3 3 0 UPF0126 domain PCP PF02429.15 gi|332795827|ref|YP_004457327.1| - 0.0049 17.2 1.7 0.46 10.8 0.1 2.2 1 1 1 2 2 2 2 Peridinin-chlorophyll A binding protein DUF5578 PF17741.1 gi|332795827|ref|YP_004457327.1| - 0.0059 16.1 0.2 0.0073 15.8 0.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5578) DUF5071 PF16804.5 gi|332795827|ref|YP_004457327.1| - 0.028 14.7 0.3 0.54 10.5 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5071) FliG_C PF01706.16 gi|332795827|ref|YP_004457327.1| - 0.03 14.5 2.5 0.39 10.9 0.8 2.2 1 1 0 2 2 2 0 FliG C-terminal domain DUF4533 PF15047.6 gi|332795827|ref|YP_004457327.1| - 0.043 13.4 6.8 0.055 13.0 3.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4533) Phage_min_cap2 PF06152.11 gi|332795827|ref|YP_004457327.1| - 0.055 12.4 0.1 0.056 12.3 0.1 1.2 1 0 0 1 1 1 0 Phage minor capsid protein 2 FadR_C PF07840.12 gi|332795827|ref|YP_004457327.1| - 0.074 13.0 1.4 5.2 6.9 0.1 2.1 1 1 1 2 2 2 0 FadR C-terminal domain MgtE_N PF03448.17 gi|332795827|ref|YP_004457327.1| - 0.1 13.2 1.6 1.5 9.5 0.2 2.9 2 2 1 3 3 3 0 MgtE intracellular N domain RPAP3_C PF13877.6 gi|332795827|ref|YP_004457327.1| - 0.11 13.1 0.9 1.8 9.2 0.9 2.1 1 1 1 2 2 2 0 Potential Monad-binding region of RPAP3 Antiterm PF03589.13 gi|332795827|ref|YP_004457327.1| - 0.12 12.7 0.7 3.8 7.9 0.0 2.4 1 1 1 2 2 2 0 Antitermination protein TFIIA_gamma_N PF02268.16 gi|332795827|ref|YP_004457327.1| - 0.16 12.0 0.6 11 6.2 0.1 2.5 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain adh_short_C2 PF13561.6 gi|332795828|ref|YP_004457328.1| - 2.9e-65 220.1 0.1 3.8e-65 219.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|332795828|ref|YP_004457328.1| - 1.2e-52 178.3 0.3 1.4e-52 178.0 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|332795828|ref|YP_004457328.1| - 9.2e-12 45.2 0.0 1.3e-11 44.7 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|332795828|ref|YP_004457328.1| - 3.4e-05 23.4 0.0 5.4e-05 22.8 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|332795828|ref|YP_004457328.1| - 0.0017 18.0 0.3 0.0047 16.5 0.2 1.9 2 1 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.19 gi|332795828|ref|YP_004457328.1| - 0.0039 16.2 0.0 0.018 14.0 0.1 1.8 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family F420_oxidored PF03807.17 gi|332795828|ref|YP_004457328.1| - 0.0047 17.5 0.1 0.058 14.0 0.1 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Polysacc_synt_2 PF02719.15 gi|332795828|ref|YP_004457328.1| - 0.0061 15.7 0.0 0.0079 15.4 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein TrkA_N PF02254.18 gi|332795828|ref|YP_004457328.1| - 0.015 15.5 0.1 0.035 14.4 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|332795828|ref|YP_004457328.1| - 0.017 14.5 0.6 0.044 13.2 0.3 1.9 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|332795828|ref|YP_004457328.1| - 0.017 14.4 0.1 1.5 8.1 0.0 2.6 2 1 0 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.6 gi|332795828|ref|YP_004457328.1| - 0.018 15.0 0.0 0.02 14.8 0.0 1.3 1 1 0 1 1 1 0 NAD(P)H-binding PAPS_reduct PF01507.19 gi|332795830|ref|YP_004457330.1| - 0.086 12.9 2.0 0.12 12.4 2.0 1.4 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family LPD5 PF18799.1 gi|332795830|ref|YP_004457330.1| - 0.66 10.4 4.5 2 8.8 0.9 2.5 1 1 1 3 3 3 0 Large polyvalent protein-associated domain 5 AAA_14 PF13173.6 gi|332795831|ref|YP_004457331.1| - 4e-22 78.7 0.0 7.6e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|332795831|ref|YP_004457331.1| - 2.1e-08 34.3 0.1 3.7e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) FtsK_SpoIIIE PF01580.18 gi|332795831|ref|YP_004457331.1| - 1.2e-05 24.8 0.0 2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|332795831|ref|YP_004457331.1| - 0.054 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Terminase_6 PF03237.15 gi|332795831|ref|YP_004457331.1| - 0.077 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Terminase-like family AAA_24 PF13479.6 gi|332795831|ref|YP_004457331.1| - 0.082 12.6 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|332795831|ref|YP_004457331.1| - 0.11 11.6 0.0 0.25 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Pyr_redox_2 PF07992.14 gi|332795832|ref|YP_004457332.1| - 5.8e-20 71.7 0.0 1e-19 70.9 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332795832|ref|YP_004457332.1| - 1.2e-07 32.1 0.7 0.0066 17.0 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|332795832|ref|YP_004457332.1| - 0.0022 17.7 0.7 0.58 9.7 0.3 3.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|332795832|ref|YP_004457332.1| - 0.011 15.0 2.1 0.14 11.4 0.4 2.7 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|332795832|ref|YP_004457332.1| - 0.039 13.0 0.6 0.33 9.9 0.0 2.6 2 2 3 5 5 5 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|332795832|ref|YP_004457332.1| - 0.057 13.7 0.3 0.13 12.5 0.3 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain PaREP1 PF05942.11 gi|332795833|ref|YP_004457333.1| - 2.2e-26 92.1 0.5 2.7e-26 91.8 0.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Macro PF01661.21 gi|332795834|ref|YP_004457334.1| - 6.8e-40 135.8 0.2 8.6e-40 135.5 0.2 1.1 1 0 0 1 1 1 1 Macro domain DUF3782 PF12644.7 gi|332795834|ref|YP_004457334.1| - 0.0011 19.1 0.1 0.0022 18.1 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF3782) Macro_2 PF14519.6 gi|332795834|ref|YP_004457334.1| - 0.0055 16.1 0.0 0.29 10.4 0.0 2.1 2 0 0 2 2 2 2 Macro-like domain DUF3197 PF11432.8 gi|332795834|ref|YP_004457334.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) Spike_NTD PF16451.5 gi|332795834|ref|YP_004457334.1| - 0.065 12.6 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 Spike glycoprotein N-terminal domain Thermopsin PF05317.11 gi|332795835|ref|YP_004457335.1| - 8.8e-81 271.2 17.7 8.8e-81 271.2 17.7 3.2 3 1 0 3 3 3 1 Thermopsin 30K_MP_core PF17644.1 gi|332795835|ref|YP_004457335.1| - 0.057 13.3 2.8 19 5.1 0.0 4.1 4 0 0 4 4 4 0 Core domain of 30K viral movement proteins COX2_TM PF02790.15 gi|332795835|ref|YP_004457335.1| - 0.83 9.8 6.8 2.3 8.4 0.3 2.7 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, transmembrane domain Sugar_tr PF00083.24 gi|332795836|ref|YP_004457336.1| - 6.7e-10 38.4 24.3 4.2e-09 35.8 24.3 2.0 1 1 0 1 1 1 1 Sugar (and other) transporter DUF4065 PF13274.6 gi|332795837|ref|YP_004457337.1| - 0.0075 17.1 1.0 0.014 16.3 1.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4065) Foamy_BEL PF03274.14 gi|332795837|ref|YP_004457337.1| - 0.014 14.8 0.0 0.18 11.1 0.0 2.0 2 0 0 2 2 2 0 Foamy virus BEL 1/2 protein DUF1456 PF07308.13 gi|332795837|ref|YP_004457337.1| - 0.018 15.3 0.9 3.1 8.2 0.1 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF1456) RNR_Alpha PF17975.1 gi|332795838|ref|YP_004457338.1| - 0.042 14.3 1.3 0.13 12.7 0.1 2.4 2 2 1 3 3 3 0 Ribonucleotide reductase alpha domain DUF445 PF04286.12 gi|332795838|ref|YP_004457338.1| - 0.063 13.1 5.5 0.27 11.0 5.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF445) GST_C_3 PF14497.6 gi|332795838|ref|YP_004457338.1| - 0.073 13.3 0.9 0.47 10.7 0.2 2.7 1 1 1 2 2 2 0 Glutathione S-transferase, C-terminal domain NADPH_Ox PF08414.10 gi|332795838|ref|YP_004457338.1| - 0.15 12.4 1.0 0.45 10.9 0.3 2.1 2 0 0 2 2 2 0 Respiratory burst NADPH oxidase TetR_C_8 PF14278.6 gi|332795838|ref|YP_004457338.1| - 0.36 11.0 7.6 2 8.6 0.3 3.1 1 1 1 3 3 3 0 Transcriptional regulator C-terminal region Sec8_exocyst PF04048.14 gi|332795838|ref|YP_004457338.1| - 1 9.3 6.3 11 5.9 0.0 3.5 3 1 0 3 3 3 0 Sec8 exocyst complex component specific domain DUF1473 PF07341.11 gi|332795838|ref|YP_004457338.1| - 2.7 7.7 9.4 3 7.6 0.2 3.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1473) ISK_Channel PF02060.15 gi|332795839|ref|YP_004457339.1| - 4.3 7.1 6.1 1.4 8.6 0.2 2.7 2 0 0 2 2 2 0 Slow voltage-gated potassium channel EHN PF06441.12 gi|332795840|ref|YP_004457340.1| - 1.1 9.7 2.5 0.95 9.9 0.3 2.0 2 0 0 2 2 2 0 Epoxide hydrolase N terminus ODV-E18 PF10717.9 gi|332795841|ref|YP_004457341.1| - 0.011 15.6 1.5 0.019 14.8 1.5 1.5 1 0 0 1 1 1 0 Occlusion-derived virus envelope protein ODV-E18 NfeD PF01957.18 gi|332795841|ref|YP_004457341.1| - 0.035 14.5 1.1 0.063 13.7 1.1 1.4 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF4307 PF14155.6 gi|332795841|ref|YP_004457341.1| - 0.1 12.4 6.9 0.065 13.1 1.7 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) DUF973 PF06157.11 gi|332795842|ref|YP_004457342.1| - 0.00013 21.1 4.0 0.00026 20.2 4.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Sugar_tr PF00083.24 gi|332795843|ref|YP_004457343.1| - 1.7e-27 96.4 26.0 3.7e-23 82.1 12.1 3.0 1 1 1 3 3 3 3 Sugar (and other) transporter MFS_1 PF07690.16 gi|332795843|ref|YP_004457343.1| - 6.7e-27 94.3 41.1 7.2e-16 58.1 24.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Collagen_mid PF15984.5 gi|332795843|ref|YP_004457343.1| - 0.02 14.6 0.1 0.074 12.8 0.1 1.8 2 0 0 2 2 2 0 Bacterial collagen, middle region DUF4731 PF15875.5 gi|332795843|ref|YP_004457343.1| - 4.8 7.4 7.6 2 8.7 0.1 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4731) HEPN PF05168.14 gi|332795844|ref|YP_004457344.1| - 3.1e-15 56.3 0.1 3.6e-15 56.1 0.1 1.0 1 0 0 1 1 1 1 HEPN domain Toxin_32 PF08120.11 gi|332795844|ref|YP_004457344.1| - 0.021 14.6 1.0 0.038 13.8 1.0 1.4 1 0 0 1 1 1 0 Tamulustoxin family Glyco_hydro_39 PF01229.17 gi|332795844|ref|YP_004457344.1| - 0.035 12.7 0.0 0.044 12.4 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolases family 39 DUF1844 PF08899.11 gi|332795844|ref|YP_004457344.1| - 0.12 12.7 0.0 0.22 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1844) PaREP1 PF05942.11 gi|332795845|ref|YP_004457345.1| - 2.4e-26 91.9 0.7 3e-26 91.6 0.7 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF1729 PF08354.10 gi|332795845|ref|YP_004457345.1| - 0.0094 14.9 0.0 0.01 14.7 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1729) OrfB_Zn_ribbon PF07282.11 gi|332795846|ref|YP_004457346.1| - 3.5e-21 74.9 0.4 3.5e-21 74.9 0.4 1.7 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332795846|ref|YP_004457346.1| - 4.4e-05 23.7 0.7 7.9e-05 22.9 0.2 1.7 2 0 0 2 2 2 1 Probable transposase YhfH PF14149.6 gi|332795846|ref|YP_004457346.1| - 0.11 12.5 0.1 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-RING_4 PF14570.6 gi|332795846|ref|YP_004457346.1| - 0.29 10.9 1.6 0.44 10.4 0.8 1.7 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain CorA PF01544.18 gi|332795847|ref|YP_004457347.1| - 0.016 14.6 0.8 0.025 13.9 0.5 1.5 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Pro-NT_NN PF07421.11 gi|332795847|ref|YP_004457347.1| - 0.028 14.7 0.2 0.064 13.5 0.1 1.6 1 1 1 2 2 2 0 Neurotensin/neuromedin N precursor GLTP PF08718.11 gi|332795847|ref|YP_004457347.1| - 0.11 12.7 0.1 0.18 12.1 0.1 1.2 1 0 0 1 1 1 0 Glycolipid transfer protein (GLTP) PIN PF01850.21 gi|332795848|ref|YP_004457348.1| - 0.032 14.7 3.8 2.2 8.8 1.1 3.0 3 1 0 3 3 3 0 PIN domain YMF19 PF02326.15 gi|332795848|ref|YP_004457348.1| - 2.7 8.8 9.6 0.26 12.1 1.5 3.0 1 1 2 3 3 3 0 Plant ATP synthase F0 Pantoate_transf PF02548.15 gi|332795849|ref|YP_004457349.1| - 1.7e-106 355.4 0.0 1.9e-106 355.2 0.0 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|332795849|ref|YP_004457349.1| - 3.2e-06 26.8 0.2 0.0049 16.4 0.0 2.9 1 1 1 3 3 3 2 Phosphoenolpyruvate phosphomutase BPD_transp_1 PF00528.22 gi|332795851|ref|YP_004457351.1| - 2.6e-17 63.2 44.7 5.3e-12 45.8 17.1 3.8 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component Chitin_synth_2 PF03142.15 gi|332795851|ref|YP_004457351.1| - 0.057 12.0 1.9 0.11 11.1 1.9 1.4 1 0 0 1 1 1 0 Chitin synthase ABC_tran PF00005.27 gi|332795852|ref|YP_004457352.1| - 5.4e-36 124.1 0.0 8.8e-36 123.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332795852|ref|YP_004457352.1| - 9e-08 32.3 2.5 0.00051 20.0 0.1 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332795852|ref|YP_004457352.1| - 7.4e-07 28.8 0.5 4.7e-06 26.2 0.5 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|332795852|ref|YP_004457352.1| - 0.00011 22.7 1.4 0.00078 20.0 0.2 2.3 2 0 0 2 2 2 1 AAA domain TOBE_2 PF08402.10 gi|332795852|ref|YP_004457352.1| - 0.00023 21.3 0.0 0.00053 20.1 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 gi|332795852|ref|YP_004457352.1| - 0.00078 19.7 0.2 0.0044 17.3 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332795852|ref|YP_004457352.1| - 0.0012 19.3 0.0 0.0018 18.7 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|332795852|ref|YP_004457352.1| - 0.0012 18.5 0.1 0.0025 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|332795852|ref|YP_004457352.1| - 0.0013 18.7 0.1 0.0026 17.7 0.1 1.5 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|332795852|ref|YP_004457352.1| - 0.0027 17.6 0.1 0.006 16.5 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase NACHT PF05729.12 gi|332795852|ref|YP_004457352.1| - 0.0052 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_33 PF13671.6 gi|332795852|ref|YP_004457352.1| - 0.014 15.5 0.1 0.045 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332795852|ref|YP_004457352.1| - 0.016 14.9 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|332795852|ref|YP_004457352.1| - 0.022 14.4 0.1 0.043 13.4 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.22 gi|332795852|ref|YP_004457352.1| - 0.025 13.8 0.2 0.39 9.9 0.1 2.0 2 0 0 2 2 2 0 NB-ARC domain T2SSE PF00437.20 gi|332795852|ref|YP_004457352.1| - 0.026 13.6 0.0 0.054 12.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_18 PF13238.6 gi|332795852|ref|YP_004457352.1| - 0.033 14.7 0.0 0.091 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|332795852|ref|YP_004457352.1| - 0.042 14.1 0.1 0.084 13.1 0.1 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|332795852|ref|YP_004457352.1| - 0.049 14.1 0.0 0.1 13.0 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|332795852|ref|YP_004457352.1| - 0.081 12.7 0.0 0.22 11.2 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_27 PF13514.6 gi|332795852|ref|YP_004457352.1| - 0.086 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|332795852|ref|YP_004457352.1| - 0.1 11.4 0.1 0.15 10.8 0.1 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_24 PF13479.6 gi|332795852|ref|YP_004457352.1| - 0.11 12.2 0.1 0.18 11.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|332795852|ref|YP_004457352.1| - 0.13 12.3 0.2 0.56 10.2 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|332795852|ref|YP_004457352.1| - 0.15 12.1 1.1 0.35 10.9 0.1 2.3 3 1 0 3 3 3 0 AAA domain SBP_bac_8 PF13416.6 gi|332795853|ref|YP_004457353.1| - 6.5e-10 39.3 0.1 2e-05 24.5 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|332795853|ref|YP_004457353.1| - 1.5e-07 31.7 0.0 0.011 15.7 0.0 2.5 2 1 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|332795853|ref|YP_004457353.1| - 0.0012 18.6 0.0 0.02 14.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|332795853|ref|YP_004457353.1| - 0.0081 15.6 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein DUF4330 PF14221.6 gi|332795853|ref|YP_004457353.1| - 0.1 12.8 0.5 0.16 12.2 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) Glyco_tranf_2_4 PF13704.6 gi|332795853|ref|YP_004457353.1| - 0.13 12.8 0.0 0.27 11.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 AA_permease_2 PF13520.6 gi|332795854|ref|YP_004457354.1| - 2.6e-19 69.4 63.2 3.5e-19 69.0 63.2 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795854|ref|YP_004457354.1| - 3.2e-06 26.0 59.9 6.4e-06 25.0 59.9 1.5 1 1 0 1 1 1 1 Amino acid permease SH3_17 PF18350.1 gi|332795854|ref|YP_004457354.1| - 1.5 8.8 4.8 1.7 8.6 0.1 2.9 3 0 0 3 3 3 0 Restriction endonuclease SH3 domain NHL PF01436.21 gi|332795855|ref|YP_004457355.1| - 6.2e-10 38.6 16.4 0.21 11.7 0.0 7.5 8 0 0 8 8 8 4 NHL repeat PEGA PF08308.11 gi|332795855|ref|YP_004457355.1| - 3.8e-07 29.9 25.8 0.0052 16.6 2.1 5.9 5 0 0 5 5 5 3 PEGA domain Lactonase PF10282.9 gi|332795855|ref|YP_004457355.1| - 1.6e-06 27.6 4.7 0.0016 17.8 4.7 3.7 1 1 0 1 1 1 1 Lactonase, 7-bladed beta-propeller Arylesterase PF01731.20 gi|332795855|ref|YP_004457355.1| - 0.00083 19.5 19.8 0.023 14.9 0.7 6.4 1 1 6 7 7 7 2 Arylesterase AMPK1_CBM PF16561.5 gi|332795855|ref|YP_004457355.1| - 0.05 13.8 0.3 36 4.7 0.0 4.0 5 0 0 5 5 5 0 Glycogen recognition site of AMP-activated protein kinase MGC-24 PF05283.11 gi|332795855|ref|YP_004457355.1| - 0.46 10.9 13.2 1.1 9.7 12.3 2.1 1 1 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin LPD30 PF18850.1 gi|332795855|ref|YP_004457355.1| - 3.5 7.4 5.6 55 3.5 0.1 3.8 3 1 1 4 4 4 0 Large polyvalent protein associated domain 30 DUF4652 PF15525.6 gi|332795856|ref|YP_004457356.1| - 0.012 15.5 0.7 0.024 14.4 0.6 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4652) Prefoldin_3 PF13758.6 gi|332795856|ref|YP_004457356.1| - 0.097 12.7 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 Prefoldin subunit Peptidase_M20 PF01546.28 gi|332795857|ref|YP_004457357.1| - 2.4e-22 79.6 0.0 3.7e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.17 gi|332795857|ref|YP_004457357.1| - 2.2e-07 30.8 0.0 3.1e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 M20_dimer PF07687.14 gi|332795857|ref|YP_004457357.1| - 1.3e-05 25.1 0.0 2.2e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M42 PF05343.14 gi|332795857|ref|YP_004457357.1| - 0.0066 15.5 0.0 0.011 14.8 0.0 1.6 1 1 0 1 1 1 1 M42 glutamyl aminopeptidase BPL_LplA_LipB PF03099.19 gi|332795858|ref|YP_004457358.1| - 8.3e-09 35.4 0.1 1.4e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Lip_prot_lig_C PF10437.9 gi|332795859|ref|YP_004457359.1| - 0.00019 21.4 1.1 0.0012 18.8 0.6 1.9 1 1 1 2 2 2 1 Bacterial lipoate protein ligase C-terminus SBP_bac_5 PF00496.22 gi|332795860|ref|YP_004457360.1| - 1.5e-11 43.9 0.0 5.7e-06 25.5 0.0 2.4 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle MGC-24 PF05283.11 gi|332795860|ref|YP_004457360.1| - 0.036 14.5 0.2 0.1 13.0 0.2 1.8 1 0 0 1 1 1 0 Multi-glycosylated core protein 24 (MGC-24), sialomucin BPD_transp_1 PF00528.22 gi|332795862|ref|YP_004457362.1| - 1.6e-31 109.5 14.4 1.6e-31 109.5 14.4 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|332795863|ref|YP_004457363.1| - 2.1e-20 73.3 15.6 2.1e-20 73.3 15.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|332795864|ref|YP_004457364.1| - 8e-28 97.7 0.0 1.2e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|332795864|ref|YP_004457364.1| - 3e-23 82.1 0.3 1.1e-22 80.4 0.1 1.9 2 0 0 2 2 2 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|332795864|ref|YP_004457364.1| - 4.1e-06 26.4 3.3 3.8e-05 23.2 3.3 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain APS_kinase PF01583.20 gi|332795864|ref|YP_004457364.1| - 2.9e-05 24.0 0.0 0.0019 18.1 0.0 2.2 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_21 PF13304.6 gi|332795864|ref|YP_004457364.1| - 0.00016 21.6 5.8 0.007 16.2 0.7 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|332795864|ref|YP_004457364.1| - 0.00059 19.5 0.2 0.0011 18.6 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|332795864|ref|YP_004457364.1| - 0.00066 20.0 0.9 0.0046 17.2 0.9 2.0 1 1 0 1 1 1 1 AAA domain PRK PF00485.18 gi|332795864|ref|YP_004457364.1| - 0.0018 18.1 0.0 0.0027 17.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_23 PF13476.6 gi|332795864|ref|YP_004457364.1| - 0.0029 18.2 0.6 0.0052 17.3 0.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332795864|ref|YP_004457364.1| - 0.0063 16.9 0.1 0.0099 16.3 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NB-ARC PF00931.22 gi|332795864|ref|YP_004457364.1| - 0.0074 15.5 0.2 0.024 13.8 0.2 1.7 2 0 0 2 2 2 1 NB-ARC domain DUF87 PF01935.17 gi|332795864|ref|YP_004457364.1| - 0.016 15.3 1.5 0.042 13.9 0.3 2.0 2 0 0 2 2 2 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|332795864|ref|YP_004457364.1| - 0.018 15.0 0.1 0.033 14.1 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|332795864|ref|YP_004457364.1| - 0.028 13.8 0.0 0.062 12.7 0.0 1.6 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|332795864|ref|YP_004457364.1| - 0.032 13.9 0.0 0.059 13.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|332795864|ref|YP_004457364.1| - 0.052 14.1 0.0 0.13 12.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|332795864|ref|YP_004457364.1| - 0.058 12.0 0.7 0.45 9.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|332795864|ref|YP_004457364.1| - 0.061 13.2 0.1 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|332795864|ref|YP_004457364.1| - 0.088 11.8 0.1 0.17 10.9 0.0 1.5 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.29 gi|332795864|ref|YP_004457364.1| - 0.11 13.0 0.1 0.36 11.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|332795864|ref|YP_004457364.1| - 0.11 12.2 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|332795864|ref|YP_004457364.1| - 0.12 11.5 0.4 0.2 10.8 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase AAA_15 PF13175.6 gi|332795864|ref|YP_004457364.1| - 0.14 11.8 3.4 0.095 12.4 1.0 1.7 1 1 0 2 2 2 0 AAA ATPase domain RNA_helicase PF00910.22 gi|332795864|ref|YP_004457364.1| - 0.16 12.4 0.0 0.39 11.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|332795864|ref|YP_004457364.1| - 0.16 12.1 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|332795864|ref|YP_004457364.1| - 0.17 11.8 0.7 0.41 10.5 0.1 1.8 2 0 0 2 2 2 0 NTPase ABC_tran PF00005.27 gi|332795865|ref|YP_004457365.1| - 6.5e-30 104.4 0.0 9.5e-30 103.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|332795865|ref|YP_004457365.1| - 8.9e-18 64.6 0.1 1.5e-17 63.9 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|332795865|ref|YP_004457365.1| - 9.5e-09 35.5 1.8 0.00016 21.6 0.3 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332795865|ref|YP_004457365.1| - 0.00013 21.4 0.5 0.00036 20.1 0.5 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|332795865|ref|YP_004457365.1| - 0.0031 17.8 1.1 0.013 15.8 1.1 2.0 1 1 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|332795865|ref|YP_004457365.1| - 0.0048 16.8 0.0 0.0074 16.2 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA_16 PF13191.6 gi|332795865|ref|YP_004457365.1| - 0.0065 16.9 0.3 0.0098 16.3 0.3 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|332795865|ref|YP_004457365.1| - 0.0067 16.4 0.2 0.012 15.5 0.2 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|332795865|ref|YP_004457365.1| - 0.015 15.0 0.1 0.025 14.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain cobW PF02492.19 gi|332795865|ref|YP_004457365.1| - 0.017 14.8 0.2 0.027 14.1 0.2 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.14 gi|332795865|ref|YP_004457365.1| - 0.022 14.6 0.2 0.047 13.6 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Rad17 PF03215.15 gi|332795865|ref|YP_004457365.1| - 0.026 14.5 0.0 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_15 PF13175.6 gi|332795865|ref|YP_004457365.1| - 0.043 13.5 0.5 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA ATPase domain DLIC PF05783.11 gi|332795865|ref|YP_004457365.1| - 0.051 12.4 0.0 0.069 12.0 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) MMR_HSR1 PF01926.23 gi|332795865|ref|YP_004457365.1| - 0.065 13.3 0.0 0.11 12.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Pox_A32 PF04665.12 gi|332795865|ref|YP_004457365.1| - 0.07 12.6 0.2 0.36 10.2 0.1 1.9 2 0 0 2 2 2 0 Poxvirus A32 protein PRK PF00485.18 gi|332795865|ref|YP_004457365.1| - 0.073 12.8 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|332795865|ref|YP_004457365.1| - 0.074 12.8 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|332795865|ref|YP_004457365.1| - 0.09 12.7 2.6 0.44 10.4 2.6 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Roc PF08477.13 gi|332795865|ref|YP_004457365.1| - 0.1 12.8 0.1 0.18 12.0 0.1 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_18 PF13238.6 gi|332795865|ref|YP_004457365.1| - 0.12 12.9 0.0 0.22 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|332795865|ref|YP_004457365.1| - 0.13 12.3 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|332795865|ref|YP_004457365.1| - 0.14 11.4 0.2 0.23 10.6 0.2 1.3 1 0 0 1 1 1 0 NB-ARC domain TrwB_AAD_bind PF10412.9 gi|332795865|ref|YP_004457365.1| - 0.14 11.1 0.0 0.2 10.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_33 PF13671.6 gi|332795865|ref|YP_004457365.1| - 0.15 12.2 0.0 0.24 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|332795865|ref|YP_004457365.1| - 0.17 11.2 0.0 0.37 10.0 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Nab2p_Zf1 PF18260.1 gi|332795865|ref|YP_004457365.1| - 0.27 11.2 0.8 0.51 10.3 0.8 1.3 1 0 0 1 1 1 0 Nuclear polyadenylated RNA-binding 2 protein CCCH zinc finger 1 AAA_23 PF13476.6 gi|332795865|ref|YP_004457365.1| - 0.74 10.3 4.3 1.9 8.9 4.3 1.9 1 1 0 1 1 1 0 AAA domain Phospholamban PF04272.14 gi|332795866|ref|YP_004457366.1| - 0.0041 16.5 0.9 0.0041 16.5 0.9 3.0 3 0 0 3 3 3 1 Phospholamban MarR PF01047.22 gi|332795867|ref|YP_004457367.1| - 0.034 14.1 0.1 0.035 14.0 0.1 1.1 1 0 0 1 1 1 0 MarR family Vta1_C PF18097.1 gi|332795868|ref|YP_004457368.1| - 0.13 12.0 0.1 5.7 6.7 0.0 2.7 3 0 0 3 3 3 0 Vta1 C-terminal domain PRA1 PF03208.19 gi|332795869|ref|YP_004457369.1| - 2.8 7.6 18.9 0.2 11.2 6.4 2.4 2 1 1 3 3 3 0 PRA1 family protein MFS_1 PF07690.16 gi|332795870|ref|YP_004457370.1| - 6.8e-13 48.3 37.9 2.8e-09 36.4 6.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332795870|ref|YP_004457370.1| - 3.6e-10 39.3 22.8 7.2e-06 25.1 1.0 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter PIN PF01850.21 gi|332795873|ref|YP_004457373.1| - 4.1e-16 59.6 0.1 4.6e-16 59.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain UPF0113_N PF17833.1 gi|332795873|ref|YP_004457373.1| - 0.15 12.6 0.5 0.23 12.1 0.1 1.5 2 0 0 2 2 2 0 UPF0113 Pre-PUA domain OrfB_Zn_ribbon PF07282.11 gi|332795874|ref|YP_004457374.1| - 1.3e-21 76.3 0.4 3e-21 75.1 0.4 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332795874|ref|YP_004457374.1| - 0.00078 19.7 0.6 0.002 18.4 0.4 1.8 2 0 0 2 2 2 1 Probable transposase Ribosomal_L32p PF01783.23 gi|332795874|ref|YP_004457374.1| - 0.1 12.9 0.4 0.3 11.4 0.4 1.8 1 0 0 1 1 1 0 Ribosomal L32p protein family 4HBT PF03061.22 gi|332795875|ref|YP_004457375.1| - 1.2e-19 70.5 0.0 1.7e-19 70.0 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.6 gi|332795875|ref|YP_004457375.1| - 2.4e-05 24.7 0.0 2.6e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF4442 PF14539.6 gi|332795875|ref|YP_004457375.1| - 0.00069 19.8 0.0 0.00083 19.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) tRNA-synt_1 PF00133.22 gi|332795876|ref|YP_004457376.1| - 1.9e-59 201.5 0.0 3.9e-58 197.2 0.0 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1g PF09334.11 gi|332795876|ref|YP_004457376.1| - 3.1e-25 88.8 0.3 6.7e-14 51.4 0.0 3.5 2 1 1 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|332795876|ref|YP_004457376.1| - 8e-18 64.8 1.0 2.3e-17 63.3 1.0 1.9 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|332795876|ref|YP_004457376.1| - 1.8e-13 50.5 0.5 2.1e-05 24.0 0.0 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1_2 PF13603.6 gi|332795876|ref|YP_004457376.1| - 6.6e-05 22.5 0.0 0.00026 20.6 0.0 2.0 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 YugN PF08868.10 gi|332795876|ref|YP_004457376.1| - 0.069 13.1 0.1 0.71 9.8 0.0 2.5 3 0 0 3 3 3 0 YugN-like family PaREP1 PF05942.11 gi|332795877|ref|YP_004457377.1| - 2.4e-28 98.3 1.9 2.9e-28 98.1 1.9 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Pyr_redox_2 PF07992.14 gi|332795878|ref|YP_004457378.1| - 7.9e-16 58.1 0.1 5.7e-13 48.7 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|332795878|ref|YP_004457378.1| - 1.5e-05 24.1 0.1 2.4e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 Tryptophan halogenase DAO PF01266.24 gi|332795878|ref|YP_004457378.1| - 6.1e-05 22.8 0.0 0.00062 19.5 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|332795878|ref|YP_004457378.1| - 0.00023 21.7 1.3 0.1 13.2 0.4 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|332795878|ref|YP_004457378.1| - 0.0014 18.7 0.1 0.027 14.5 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|332795878|ref|YP_004457378.1| - 0.0091 16.2 0.1 0.018 15.2 0.1 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Malic_M PF03949.15 gi|332795878|ref|YP_004457378.1| - 0.046 13.0 0.1 0.071 12.4 0.1 1.3 1 0 0 1 1 1 0 Malic enzyme, NAD binding domain FAD_binding_2 PF00890.24 gi|332795878|ref|YP_004457378.1| - 0.077 12.1 0.5 0.12 11.4 0.5 1.3 1 0 0 1 1 1 0 FAD binding domain Lycopene_cycl PF05834.12 gi|332795878|ref|YP_004457378.1| - 0.21 10.6 0.1 0.84 8.6 0.1 1.9 2 0 0 2 2 2 0 Lycopene cyclase protein Aminotran_3 PF00202.21 gi|332795879|ref|YP_004457379.1| - 2.3e-28 99.0 0.0 1.9e-19 69.6 0.0 2.2 1 1 1 2 2 2 2 Aminotransferase class-III ResIII PF04851.15 gi|332795880|ref|YP_004457380.1| - 8.2e-21 74.7 0.0 3.6e-20 72.7 0.0 2.1 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|332795880|ref|YP_004457380.1| - 3.6e-18 65.9 0.1 2.1e-17 63.5 0.0 2.4 3 0 0 3 3 3 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|332795880|ref|YP_004457380.1| - 1.6e-10 41.1 0.0 5e-10 39.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ERCC3_RAD25_C PF16203.5 gi|332795880|ref|YP_004457380.1| - 2.4e-07 30.2 0.0 4.7e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase MerR PF00376.23 gi|332795880|ref|YP_004457380.1| - 0.0065 16.2 0.0 0.02 14.6 0.0 1.8 1 0 0 1 1 1 1 MerR family regulatory protein PhoH PF02562.16 gi|332795880|ref|YP_004457380.1| - 0.015 14.8 0.1 0.041 13.3 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein T2SSE PF00437.20 gi|332795880|ref|YP_004457380.1| - 0.022 13.8 0.0 0.045 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein SWI2_SNF2 PF18766.1 gi|332795880|ref|YP_004457380.1| - 0.047 13.3 0.0 0.14 11.8 0.0 1.8 1 1 0 1 1 1 0 SWI2/SNF2 ATPase RNA12 PF10443.9 gi|332795880|ref|YP_004457380.1| - 0.072 11.8 0.0 0.13 10.9 0.0 1.3 1 0 0 1 1 1 0 RNA12 protein Sugar_tr PF00083.24 gi|332795882|ref|YP_004457382.1| - 1e-53 182.8 22.1 4.2e-53 180.8 22.1 1.8 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332795882|ref|YP_004457382.1| - 3.2e-27 95.4 40.1 8.7e-21 74.2 33.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3211 PF11485.8 gi|332795883|ref|YP_004457383.1| - 1.8e-42 144.7 4.0 2.1e-42 144.6 4.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) NTP_transf_2 PF01909.23 gi|332795884|ref|YP_004457384.1| - 5.1e-08 33.1 0.0 7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332795884|ref|YP_004457384.1| - 2.6e-06 27.4 0.1 4.3e-06 26.7 0.1 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|332795885|ref|YP_004457385.1| - 6.8e-28 97.2 0.2 7.5e-28 97.0 0.2 1.0 1 0 0 1 1 1 1 HEPN domain Peptidase_M20 PF01546.28 gi|332795886|ref|YP_004457386.1| - 6.2e-31 107.7 0.0 7.4e-31 107.5 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|332795886|ref|YP_004457386.1| - 5.4e-20 71.3 0.0 1e-19 70.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|332795886|ref|YP_004457386.1| - 1.5e-07 31.3 0.0 2.3e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 Peptidase_M42 PF05343.14 gi|332795886|ref|YP_004457386.1| - 0.0065 15.5 0.0 0.3 10.1 0.0 2.4 2 0 0 2 2 2 1 M42 glutamyl aminopeptidase DUF5611 PF18446.1 gi|332795886|ref|YP_004457386.1| - 0.28 12.0 1.7 9.9 7.1 0.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF5611) AA_permease_2 PF13520.6 gi|332795887|ref|YP_004457387.1| - 9.3e-29 100.5 62.7 1.5e-28 99.8 62.7 1.3 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795887|ref|YP_004457387.1| - 4.9e-09 35.3 54.8 6.7e-09 34.9 54.8 1.1 1 0 0 1 1 1 1 Amino acid permease Ribosomal_L13e PF01294.18 gi|332795888|ref|YP_004457388.1| - 1.9e-13 50.7 0.1 1.9e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L13e PaREP1 PF05942.11 gi|332795889|ref|YP_004457389.1| - 2.4e-24 85.5 0.0 2.9e-24 85.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332795889|ref|YP_004457389.1| - 0.055 13.6 2.7 0.6 10.3 2.7 2.1 1 1 0 1 1 1 0 HEPN domain AhpC-TSA PF00578.21 gi|332795890|ref|YP_004457390.1| - 1.8e-36 124.8 0.0 2.1e-36 124.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|332795890|ref|YP_004457390.1| - 3.1e-27 95.1 0.0 3.7e-27 94.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|332795890|ref|YP_004457390.1| - 0.001 19.2 0.0 0.21 11.7 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA antioxidant enzyme SCO1-SenC PF02630.14 gi|332795890|ref|YP_004457390.1| - 0.0027 17.6 0.0 0.0046 16.9 0.0 1.4 1 0 0 1 1 1 1 SCO1/SenC HEPN PF05168.14 gi|332795891|ref|YP_004457391.1| - 2.4e-31 108.3 3.2 3.5e-31 107.8 3.2 1.2 1 0 0 1 1 1 1 HEPN domain Innexin PF00876.18 gi|332795891|ref|YP_004457391.1| - 0.048 12.9 0.0 0.049 12.9 0.0 1.1 1 0 0 1 1 1 0 Innexin DUF1564 PF07600.11 gi|332795891|ref|YP_004457391.1| - 0.072 12.8 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1564) Thermopsin PF05317.11 gi|332795892|ref|YP_004457392.1| - 1.3e-65 221.5 14.9 1.3e-65 221.5 14.9 2.2 2 1 0 2 2 2 1 Thermopsin PaREP1 PF05942.11 gi|332795893|ref|YP_004457393.1| - 7.8e-05 22.6 0.9 0.00011 22.1 0.5 1.5 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF3909 PF13077.6 gi|332795893|ref|YP_004457393.1| - 0.052 13.7 0.4 0.09 12.9 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3909) DUF1780 PF08682.10 gi|332795893|ref|YP_004457393.1| - 0.14 11.8 1.4 0.3 10.8 0.7 1.7 1 1 1 2 2 2 0 Putative endonuclease, protein of unknown function (DUF1780) Rop-like PF05082.13 gi|332795893|ref|YP_004457393.1| - 0.2 11.5 0.1 0.2 11.5 0.1 2.8 3 1 0 3 3 3 0 Rop-like KIP1 PF07765.12 gi|332795893|ref|YP_004457393.1| - 1.2 9.3 7.3 4.5 7.5 0.4 3.3 2 1 1 3 3 3 0 KIP1-like protein XRN_M PF17846.1 gi|332795894|ref|YP_004457394.1| - 2.7 6.8 4.7 3.2 6.6 4.7 1.1 1 0 0 1 1 1 0 Xrn1 helical domain PIN PF01850.21 gi|332795895|ref|YP_004457395.1| - 1.4e-10 41.7 0.6 1.8e-10 41.4 0.6 1.1 1 0 0 1 1 1 1 PIN domain GTP_cyclohydro2 PF00925.20 gi|332795895|ref|YP_004457395.1| - 0.058 13.0 0.0 0.066 12.8 0.0 1.2 1 0 0 1 1 1 0 GTP cyclohydrolase II DUF5615 PF18480.1 gi|332795895|ref|YP_004457395.1| - 0.11 12.2 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) F-112 PF09645.10 gi|332795895|ref|YP_004457395.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 F-112 protein DUF4535 PF15054.6 gi|332795896|ref|YP_004457396.1| - 0.8 9.5 6.2 3.6 7.4 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4535) VAPB_antitox PF02697.14 gi|332795896|ref|YP_004457396.1| - 0.91 10.3 9.6 5.8 7.8 9.6 2.0 1 1 0 1 1 1 0 Putative antitoxin ATP-cone PF03477.16 gi|332795897|ref|YP_004457397.1| - 1.8e-08 34.8 2.4 3.1e-08 34.1 1.4 1.8 2 0 0 2 2 2 1 ATP cone domain SRP54_N PF02881.19 gi|332795897|ref|YP_004457397.1| - 0.0062 16.7 3.2 0.052 13.8 1.5 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain DUF3368 PF11848.8 gi|332795897|ref|YP_004457397.1| - 0.021 14.6 0.2 2.6 7.9 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3368) EnY2 PF10163.9 gi|332795897|ref|YP_004457397.1| - 0.033 14.5 2.7 0.088 13.2 0.5 2.3 3 0 0 3 3 3 0 Transcription factor e(y)2 DUF1002 PF06207.11 gi|332795897|ref|YP_004457397.1| - 0.049 13.2 0.3 1.4 8.4 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) Dynein_light PF01221.18 gi|332795897|ref|YP_004457397.1| - 0.05 13.9 0.3 30 5.0 0.1 3.2 3 1 0 3 3 3 0 Dynein light chain type 1 PRP1_N PF06424.12 gi|332795897|ref|YP_004457397.1| - 0.051 14.0 0.8 0.11 12.9 0.8 1.5 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal SPO22 PF08631.10 gi|332795897|ref|YP_004457397.1| - 0.069 12.6 0.0 0.4 10.1 0.0 1.9 1 1 1 2 2 2 0 Meiosis protein SPO22/ZIP4 like Rep_fac_C PF08542.11 gi|332795897|ref|YP_004457397.1| - 0.14 12.5 0.1 1.4 9.3 0.0 2.1 2 0 0 2 2 2 0 Replication factor C C-terminal domain DUF2680 PF10925.8 gi|332795897|ref|YP_004457397.1| - 0.21 11.6 2.5 2.6 8.1 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2680) TcfC PF16967.5 gi|332795898|ref|YP_004457398.1| - 0.054 13.0 0.4 0.79 9.3 0.2 2.4 2 1 0 2 2 2 0 E-set like domain Y_Y_Y PF07495.13 gi|332795898|ref|YP_004457398.1| - 0.12 12.4 5.7 1.7 8.7 5.7 2.5 1 1 0 1 1 1 0 Y_Y_Y domain MazE_antitoxin PF04014.18 gi|332795899|ref|YP_004457399.1| - 3e-11 43.0 0.4 5.7e-11 42.1 0.3 1.5 1 1 1 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin TOBE PF03459.17 gi|332795899|ref|YP_004457399.1| - 0.078 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 TOBE domain LPD22 PF18834.1 gi|332795899|ref|YP_004457399.1| - 0.15 12.3 0.0 0.17 12.1 0.0 1.1 1 0 0 1 1 1 0 Large polyvalent protein associated domain 22 PIN PF01850.21 gi|332795900|ref|YP_004457400.1| - 8e-10 39.3 0.7 1.1e-09 38.9 0.7 1.2 1 0 0 1 1 1 1 PIN domain Phycobilisome PF00502.19 gi|332795900|ref|YP_004457400.1| - 0.093 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Phycobilisome protein Mucin PF01456.17 gi|332795901|ref|YP_004457401.1| - 0.015 15.3 17.2 0.03 14.3 17.2 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein Alpha_GJ PF03229.13 gi|332795901|ref|YP_004457401.1| - 0.055 14.0 5.5 0.097 13.2 5.5 1.4 1 0 0 1 1 1 0 Alphavirus glycoprotein J Glycophorin_A PF01102.18 gi|332795901|ref|YP_004457401.1| - 0.27 11.5 6.9 0.65 10.2 6.9 1.6 1 0 0 1 1 1 0 Glycophorin A Creatininase PF02633.14 gi|332795902|ref|YP_004457402.1| - 3.1e-39 134.9 0.0 3.6e-39 134.7 0.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF22 PF01629.16 gi|332795903|ref|YP_004457403.1| - 0.028 14.1 0.1 0.19 11.4 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF22 Nitro_FeMo-Co PF02579.17 gi|332795903|ref|YP_004457403.1| - 0.053 13.9 0.0 0.075 13.4 0.0 1.2 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor PTP2 PF17022.5 gi|332795903|ref|YP_004457403.1| - 0.06 12.9 0.1 0.076 12.6 0.1 1.2 1 0 0 1 1 1 0 Polar tube protein 2 from Microsporidia MFS_1 PF07690.16 gi|332795904|ref|YP_004457404.1| - 1.1e-28 100.2 48.5 2.8e-16 59.4 27.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332795904|ref|YP_004457404.1| - 6.8e-06 24.8 1.7 6.8e-06 24.8 1.7 2.0 2 0 0 2 2 2 1 Transmembrane secretion effector UNC-93 PF05978.16 gi|332795904|ref|YP_004457404.1| - 0.0048 16.6 4.7 0.0048 16.6 4.7 3.9 2 2 2 4 4 4 1 Ion channel regulatory protein UNC-93 OATP PF03137.20 gi|332795904|ref|YP_004457404.1| - 3.8 5.7 23.2 0.39 9.0 1.5 3.7 1 1 3 4 4 4 0 Organic Anion Transporter Polypeptide (OATP) family Methyltransf_11 PF08241.12 gi|332795905|ref|YP_004457405.1| - 3.5e-09 37.2 0.0 5e-09 36.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332795905|ref|YP_004457405.1| - 8.6e-06 26.4 0.0 2.8e-05 24.7 0.0 1.8 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|332795905|ref|YP_004457405.1| - 0.0036 17.2 0.3 0.043 13.7 0.3 2.0 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|332795905|ref|YP_004457405.1| - 0.0074 17.0 0.0 0.011 16.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332795905|ref|YP_004457405.1| - 0.0081 16.0 0.2 0.034 14.0 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|332795905|ref|YP_004457405.1| - 0.015 15.0 0.2 0.036 13.8 0.2 1.5 1 1 0 1 1 1 0 Lysine methyltransferase Methyltransf_23 PF13489.6 gi|332795905|ref|YP_004457405.1| - 0.023 14.5 0.0 0.031 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|332795905|ref|YP_004457405.1| - 0.047 13.1 0.2 0.11 11.9 0.2 1.5 1 1 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_29 PF03141.16 gi|332795905|ref|YP_004457405.1| - 0.062 11.8 0.0 0.11 11.0 0.0 1.6 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|332795905|ref|YP_004457405.1| - 0.093 11.6 0.0 0.11 11.4 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) DUF3800 PF12686.7 gi|332795906|ref|YP_004457406.1| - 0.0001 22.9 0.3 0.00015 22.4 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) DUF722 PF05263.11 gi|332795906|ref|YP_004457406.1| - 0.028 14.6 0.1 6.5 7.0 0.2 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF722) PhoH PF02562.16 gi|332795907|ref|YP_004457407.1| - 6.3e-44 149.9 0.0 9.3e-44 149.3 0.0 1.3 1 0 0 1 1 1 1 PhoH-like protein KH_2 PF07650.17 gi|332795907|ref|YP_004457407.1| - 2.2e-06 27.4 1.7 2.2e-06 27.4 1.7 2.6 1 1 1 2 2 2 1 KH domain KH_5 PF13184.6 gi|332795907|ref|YP_004457407.1| - 4e-06 26.8 2.6 0.00019 21.5 0.1 3.0 2 0 0 2 2 2 1 NusA-like KH domain KH_1 PF00013.29 gi|332795907|ref|YP_004457407.1| - 6.9e-06 25.8 2.4 0.00012 21.8 0.3 2.8 2 0 0 2 2 2 1 KH domain AAA_30 PF13604.6 gi|332795907|ref|YP_004457407.1| - 0.003 17.3 0.0 0.031 14.0 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|332795907|ref|YP_004457407.1| - 0.0047 17.2 0.0 0.011 16.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain KH_4 PF13083.6 gi|332795907|ref|YP_004457407.1| - 0.0066 16.3 0.4 0.18 11.7 0.2 2.8 2 0 0 2 2 2 1 KH domain ATPase PF06745.13 gi|332795907|ref|YP_004457407.1| - 0.0073 15.7 0.4 0.02 14.2 0.3 1.9 1 1 0 1 1 1 1 KaiC ResIII PF04851.15 gi|332795907|ref|YP_004457407.1| - 0.0079 16.2 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit IstB_IS21 PF01695.17 gi|332795907|ref|YP_004457407.1| - 0.041 13.6 0.0 0.097 12.4 0.0 1.7 1 0 0 1 1 1 0 IstB-like ATP binding protein PEP-utilizers_C PF02896.18 gi|332795907|ref|YP_004457407.1| - 0.055 12.6 0.3 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 PEP-utilising enzyme, TIM barrel domain DEAD PF00270.29 gi|332795907|ref|YP_004457407.1| - 0.1 12.3 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 DEAD/DEAH box helicase ParA PF10609.9 gi|332795908|ref|YP_004457408.1| - 4.3e-27 95.1 0.2 4.9e-27 95.0 0.2 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|332795908|ref|YP_004457408.1| - 8.7e-05 22.6 0.0 8.7e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|332795908|ref|YP_004457408.1| - 0.0075 15.5 2.0 0.69 9.0 1.1 2.2 1 1 1 2 2 2 2 Anion-transporting ATPase MoCF_biosynth PF00994.24 gi|332795908|ref|YP_004457408.1| - 0.041 13.5 0.1 0.07 12.8 0.1 1.3 1 0 0 1 1 1 0 Probable molybdopterin binding domain AAA_31 PF13614.6 gi|332795908|ref|YP_004457408.1| - 0.043 13.7 2.0 0.16 11.9 2.0 2.0 1 1 0 1 1 1 0 AAA domain DUF5359 PF17313.2 gi|332795908|ref|YP_004457408.1| - 0.048 13.7 0.1 0.13 12.3 0.1 1.7 1 0 0 1 1 1 0 Family of unknown function (DUF5359) HypA PF01155.19 gi|332795909|ref|YP_004457409.1| - 3e-24 85.2 0.0 3.5e-24 85.0 0.0 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|332795909|ref|YP_004457409.1| - 0.00021 20.7 0.7 0.35 10.4 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|332795909|ref|YP_004457409.1| - 0.0023 17.3 2.3 0.16 11.4 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|332795909|ref|YP_004457409.1| - 0.0033 17.5 3.2 0.053 13.6 3.2 2.2 1 1 0 1 1 1 1 Zinc ribbon domain PyrI_C PF02748.15 gi|332795909|ref|YP_004457409.1| - 0.007 16.3 0.4 0.8 9.7 0.1 2.5 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain TFIIS_C PF01096.18 gi|332795909|ref|YP_004457409.1| - 0.0071 16.2 1.3 2.6 8.0 0.3 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Lar_restr_allev PF14354.6 gi|332795909|ref|YP_004457409.1| - 0.026 14.9 0.0 5.4 7.5 0.0 2.2 2 0 0 2 2 2 0 Restriction alleviation protein Lar Mu-like_Com PF10122.9 gi|332795909|ref|YP_004457409.1| - 0.031 13.7 0.7 4.9 6.7 0.3 2.5 2 1 0 2 2 2 0 Mu-like prophage protein Com zf-AN1 PF01428.16 gi|332795909|ref|YP_004457409.1| - 0.031 14.4 1.3 2.1 8.6 0.2 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger Zn_Tnp_IS1595 PF12760.7 gi|332795909|ref|YP_004457409.1| - 0.031 14.2 0.4 8.5 6.4 0.0 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|332795909|ref|YP_004457409.1| - 0.032 13.9 5.7 1.5 8.7 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|332795909|ref|YP_004457409.1| - 0.034 13.8 0.2 8.8 6.1 0.0 2.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-LITAF-like PF10601.9 gi|332795909|ref|YP_004457409.1| - 0.035 14.4 0.7 3.3 8.1 0.1 2.2 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Ogr_Delta PF04606.12 gi|332795909|ref|YP_004457409.1| - 0.066 13.2 0.0 0.91 9.6 0.0 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger eIF-5_eIF-2B PF01873.17 gi|332795909|ref|YP_004457409.1| - 0.07 13.0 0.5 2.5 8.0 0.0 2.4 2 1 0 2 2 2 0 Domain found in IF2B/IF5 zf-CHCC PF10276.9 gi|332795909|ref|YP_004457409.1| - 0.075 13.1 1.3 0.9 9.6 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger domain zf-C2H2 PF00096.26 gi|332795909|ref|YP_004457409.1| - 0.11 13.0 3.7 0.87 10.2 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Glutaredoxin PF00462.24 gi|332795909|ref|YP_004457409.1| - 0.11 12.7 0.0 0.43 10.8 0.0 2.0 1 0 0 1 1 1 0 Glutaredoxin zinc_ribbon_6 PF14599.6 gi|332795909|ref|YP_004457409.1| - 0.16 12.0 0.8 16 5.6 0.2 2.7 2 1 0 2 2 2 0 Zinc-ribbon zf-BED PF02892.15 gi|332795909|ref|YP_004457409.1| - 0.17 11.9 0.4 11 6.1 0.1 2.2 2 0 0 2 2 2 0 BED zinc finger zf-H2C2_2 PF13465.6 gi|332795909|ref|YP_004457409.1| - 0.19 12.2 5.6 2.5 8.7 1.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_4 PF13717.6 gi|332795909|ref|YP_004457409.1| - 0.19 11.6 5.5 0.32 11.0 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Sgf11 PF08209.11 gi|332795909|ref|YP_004457409.1| - 0.36 10.4 1.6 4.5 6.9 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|332795909|ref|YP_004457409.1| - 0.37 10.7 2.7 2.4 8.1 1.5 2.5 2 1 0 2 2 2 0 Cysteine-rich CPXCG zf_UBZ PF18439.1 gi|332795909|ref|YP_004457409.1| - 0.45 10.2 1.7 1.7 8.3 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C2H2_4 PF13894.6 gi|332795909|ref|YP_004457409.1| - 0.55 11.2 4.6 2.7 9.1 0.2 2.4 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.6 gi|332795909|ref|YP_004457409.1| - 2.2 8.3 7.7 9 6.3 0.6 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_5 PF13719.6 gi|332795909|ref|YP_004457409.1| - 3.7 7.4 7.1 7.3 6.4 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF364 PF04016.12 gi|332795910|ref|YP_004457410.1| - 3e-41 140.4 0.1 4.3e-41 139.9 0.1 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|332795910|ref|YP_004457410.1| - 1.1e-20 73.7 0.2 2.5e-20 72.5 0.2 1.7 2 0 0 2 2 2 1 Putative heavy-metal chelation Lactamase_B PF00753.27 gi|332795911|ref|YP_004457411.1| - 2.3e-10 40.8 0.7 3.3e-10 40.3 0.7 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332795911|ref|YP_004457411.1| - 7.8e-05 22.3 0.0 9.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|332795911|ref|YP_004457411.1| - 0.00016 21.1 0.0 0.00027 20.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|332795911|ref|YP_004457411.1| - 0.0015 18.4 0.0 0.0027 17.6 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain NicO PF03824.16 gi|332795912|ref|YP_004457412.1| - 5.5e-24 85.0 0.0 6.3e-24 84.8 0.0 1.0 1 0 0 1 1 1 1 High-affinity nickel-transport protein OrfB_Zn_ribbon PF07282.11 gi|332795913|ref|YP_004457413.1| - 5.6e-20 71.0 1.4 1.1e-19 70.1 0.5 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332795913|ref|YP_004457413.1| - 0.00022 21.4 0.5 0.00053 20.2 0.5 1.6 1 0 0 1 1 1 1 Probable transposase PCP_red PF08369.10 gi|332795913|ref|YP_004457413.1| - 0.048 13.9 0.1 0.098 12.9 0.1 1.6 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit zf-RING_4 PF14570.6 gi|332795913|ref|YP_004457413.1| - 0.064 13.1 2.4 0.082 12.7 1.3 1.7 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DUF3466 PF11949.8 gi|332795913|ref|YP_004457413.1| - 0.065 11.8 0.0 0.083 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3466) YhfH PF14149.6 gi|332795913|ref|YP_004457413.1| - 0.11 12.5 0.5 0.63 10.1 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein C1_1 PF00130.22 gi|332795913|ref|YP_004457413.1| - 0.15 12.0 0.6 0.33 10.9 0.6 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF3523 PF12037.8 gi|332795916|ref|YP_004457416.1| - 0.027 13.8 0.3 0.027 13.8 0.3 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3523) DsbD_2 PF13386.6 gi|332795916|ref|YP_004457416.1| - 0.55 10.1 20.4 0.69 9.8 17.0 2.7 1 1 1 2 2 2 0 Cytochrome C biogenesis protein transmembrane region CBS PF00571.28 gi|332795917|ref|YP_004457417.1| - 1.6e-07 31.7 2.8 6.4e-05 23.3 0.5 2.3 2 1 0 2 2 2 2 CBS domain DUF2726 PF10881.8 gi|332795917|ref|YP_004457417.1| - 0.03 14.2 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2726) NT5C PF06941.12 gi|332795917|ref|YP_004457417.1| - 0.039 13.8 0.2 0.18 11.7 0.1 1.9 1 1 1 2 2 2 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) PFK PF00365.20 gi|332795917|ref|YP_004457417.1| - 0.061 12.7 0.2 0.08 12.2 0.2 1.2 1 0 0 1 1 1 0 Phosphofructokinase NitrOD1 PF18549.1 gi|332795917|ref|YP_004457417.1| - 0.07 13.1 1.0 0.16 11.9 1.0 1.7 1 1 0 1 1 1 0 Nitrosopumilus output domain 1 DUF4342 PF14242.6 gi|332795917|ref|YP_004457417.1| - 0.34 10.9 6.4 1.6 8.7 0.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4342) DUF3681 PF12442.8 gi|332795918|ref|YP_004457418.1| - 0.37 11.3 8.7 0.29 11.6 3.3 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3681) CPP1-like PF11833.8 gi|332795918|ref|YP_004457418.1| - 2.4 7.8 8.4 0.86 9.2 5.9 1.6 1 1 1 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF1641 PF07849.11 gi|332795919|ref|YP_004457419.1| - 4.8e-09 35.9 1.0 1.1e-08 34.8 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF1641) STI1 PF17830.1 gi|332795919|ref|YP_004457419.1| - 0.0028 17.5 0.5 0.062 13.2 0.1 3.0 2 1 0 2 2 2 1 STI1 domain MgtE_N PF03448.17 gi|332795919|ref|YP_004457419.1| - 0.014 16.0 0.2 0.45 11.2 0.0 2.2 2 0 0 2 2 2 0 MgtE intracellular N domain Pyr_redox_2 PF07992.14 gi|332795920|ref|YP_004457420.1| - 1.7e-19 70.1 0.0 8.4e-19 67.9 0.0 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|332795920|ref|YP_004457420.1| - 0.005 16.8 0.0 0.068 13.2 0.0 2.3 3 0 0 3 3 3 1 FAD-NAD(P)-binding DAO PF01266.24 gi|332795920|ref|YP_004457420.1| - 0.032 13.8 0.1 0.096 12.2 0.1 1.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|332795920|ref|YP_004457420.1| - 0.036 14.3 0.0 0.11 12.8 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|332795920|ref|YP_004457420.1| - 0.053 12.4 0.0 0.076 11.9 0.0 1.2 1 0 0 1 1 1 0 Tryptophan halogenase GIDA PF01134.22 gi|332795920|ref|YP_004457420.1| - 0.14 11.2 0.1 1.6 7.7 0.0 2.2 2 0 0 2 2 2 0 Glucose inhibited division protein A TusA PF01206.17 gi|332795921|ref|YP_004457421.1| - 1.9e-05 24.4 0.0 2e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA Fer4 PF00037.27 gi|332795922|ref|YP_004457422.1| - 8.6e-20 69.7 43.7 1.4e-08 34.2 4.6 6.1 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_6 PF12837.7 gi|332795922|ref|YP_004457422.1| - 1.4e-16 59.7 39.6 1.7e-06 27.9 3.4 5.6 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332795922|ref|YP_004457422.1| - 1.3e-15 57.7 35.6 1.3e-07 32.1 10.9 4.0 3 1 0 3 3 3 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332795922|ref|YP_004457422.1| - 9.5e-12 45.7 34.0 0.00034 21.5 0.8 5.2 3 2 1 4 4 4 4 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|332795922|ref|YP_004457422.1| - 1.5e-11 44.3 45.1 2.6e-06 27.5 11.7 4.2 3 1 2 5 5 5 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332795922|ref|YP_004457422.1| - 3.2e-11 43.2 38.7 4.6e-06 26.7 12.4 4.2 2 1 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332795922|ref|YP_004457422.1| - 6.8e-11 42.1 42.7 2.1e-06 27.7 11.8 4.8 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332795922|ref|YP_004457422.1| - 1.7e-09 38.0 25.3 0.024 15.1 0.5 4.4 4 0 0 4 4 4 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332795922|ref|YP_004457422.1| - 1.3e-08 34.4 41.9 0.0014 18.6 2.6 6.0 6 0 0 6 6 6 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|332795922|ref|YP_004457422.1| - 1.7e-06 28.4 33.5 0.028 15.0 0.7 5.5 3 1 2 5 5 5 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332795922|ref|YP_004457422.1| - 2.4e-05 24.5 53.2 0.013 15.9 2.2 6.5 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_15 PF13459.6 gi|332795922|ref|YP_004457422.1| - 0.0017 19.1 22.9 0.19 12.5 2.3 4.8 4 1 1 5 5 5 3 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|332795922|ref|YP_004457422.1| - 0.0025 18.6 54.3 0.17 12.9 3.5 5.4 6 0 0 6 6 4 4 4Fe-4S binding domain Fer4_22 PF17179.4 gi|332795922|ref|YP_004457422.1| - 0.016 16.1 28.5 0.3 12.0 1.9 5.3 4 1 1 5 5 5 0 4Fe-4S dicluster domain Zn-ribbon_8 PF09723.10 gi|332795922|ref|YP_004457422.1| - 0.089 12.9 0.2 0.089 12.9 0.2 3.6 4 1 0 4 4 2 0 Zinc ribbon domain Fer4_18 PF13746.6 gi|332795922|ref|YP_004457422.1| - 5.5 7.2 31.2 9.4 6.5 11.2 4.1 2 2 1 3 3 3 0 4Fe-4S dicluster domain zf-CHCC PF10276.9 gi|332795922|ref|YP_004457422.1| - 8.9 6.5 10.7 6 7.0 0.0 3.6 4 0 0 4 4 4 0 Zinc-finger domain Nitrate_red_del PF02613.15 gi|332795923|ref|YP_004457423.1| - 8.3e-07 29.1 0.0 1.6e-06 28.2 0.0 1.6 1 1 0 1 1 1 1 Nitrate reductase delta subunit LtuB PF17455.2 gi|332795923|ref|YP_004457423.1| - 0.012 16.2 0.4 0.73 10.5 0.1 2.5 2 0 0 2 2 2 0 Late transcription unit B Fer4_11 PF13247.6 gi|332795924|ref|YP_004457424.1| - 2.9e-23 81.9 4.5 2.9e-23 81.9 4.5 1.7 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332795924|ref|YP_004457424.1| - 1.1e-12 48.3 10.3 5.9e-07 30.0 2.6 3.4 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332795924|ref|YP_004457424.1| - 2.3e-10 40.4 16.2 1.9e-06 27.9 6.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332795924|ref|YP_004457424.1| - 2.2e-09 37.3 14.2 2.7e-06 27.4 3.4 2.9 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332795924|ref|YP_004457424.1| - 2.3e-05 25.2 18.0 0.14 13.1 0.7 4.3 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|332795924|ref|YP_004457424.1| - 7.8e-05 22.3 31.8 0.024 14.5 1.1 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.7 gi|332795924|ref|YP_004457424.1| - 0.00079 20.2 32.8 0.012 16.5 5.5 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|332795924|ref|YP_004457424.1| - 0.0023 17.9 33.9 0.091 12.9 3.9 5.1 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.6 gi|332795924|ref|YP_004457424.1| - 0.005 17.3 5.7 0.005 17.3 5.7 3.7 4 1 0 4 4 4 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332795924|ref|YP_004457424.1| - 0.086 13.0 1.2 0.086 13.0 1.2 4.7 4 1 0 4 4 4 0 4Fe-4S binding domain Fer4_17 PF13534.6 gi|332795924|ref|YP_004457424.1| - 0.2 12.2 18.3 2.4 8.8 0.4 4.3 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332795924|ref|YP_004457424.1| - 0.49 11.0 31.5 0.62 10.7 1.9 4.9 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332795924|ref|YP_004457424.1| - 2.8 8.1 24.9 0.34 11.1 0.7 3.3 4 1 0 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332795924|ref|YP_004457424.1| - 6.7 7.5 15.2 12 6.7 3.0 3.7 3 1 0 3 3 3 0 4Fe-4S single cluster domain Molydop_binding PF01568.21 gi|332795925|ref|YP_004457425.1| - 7.3e-08 32.4 0.0 2.8e-07 30.5 0.0 2.0 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdopterin PF00384.22 gi|332795925|ref|YP_004457425.1| - 5.8e-06 25.5 0.0 0.12 11.3 0.0 3.5 4 0 0 4 4 4 2 Molybdopterin oxidoreductase TAT_signal PF10518.9 gi|332795925|ref|YP_004457425.1| - 0.00067 19.4 0.1 0.0012 18.5 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Molybdop_Fe4S4 PF04879.16 gi|332795925|ref|YP_004457425.1| - 0.004 17.1 0.4 0.0089 16.0 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NrfD PF03916.14 gi|332795926|ref|YP_004457426.1| - 3.4e-31 109.0 28.5 4.5e-31 108.6 28.5 1.1 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DUF4818 PF16089.5 gi|332795926|ref|YP_004457426.1| - 0.3 11.6 4.6 0.16 12.4 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4818) HTH_45 PF14947.6 gi|332795927|ref|YP_004457427.1| - 0.003 17.5 0.7 0.012 15.6 0.2 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|332795927|ref|YP_004457427.1| - 0.013 15.4 0.2 0.033 14.1 0.1 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|332795927|ref|YP_004457427.1| - 0.014 14.9 0.3 0.048 13.2 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding OHA PF14418.6 gi|332795927|ref|YP_004457427.1| - 0.063 13.1 4.0 9.6 6.1 1.7 3.3 2 1 1 3 3 3 0 OST-HTH Associated domain DoxD PF04173.13 gi|332795928|ref|YP_004457428.1| - 3.9e-60 202.6 3.3 4.3e-60 202.4 3.3 1.0 1 0 0 1 1 1 1 TQO small subunit DoxD DoxX PF07681.12 gi|332795928|ref|YP_004457428.1| - 0.021 15.4 11.3 0.021 15.4 11.3 2.3 2 1 0 2 2 2 0 DoxX DoxA PF07680.11 gi|332795929|ref|YP_004457429.1| - 5.6e-43 146.0 0.0 7e-43 145.7 0.0 1.1 1 0 0 1 1 1 1 TQO small subunit DoxA NAR2 PF16974.5 gi|332795929|ref|YP_004457429.1| - 0.035 13.5 0.0 0.056 12.9 0.0 1.2 1 0 0 1 1 1 0 High-affinity nitrate transporter accessory PPC PF04151.15 gi|332795929|ref|YP_004457429.1| - 0.038 15.1 0.0 0.12 13.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain Ubie_methyltran PF01209.18 gi|332795930|ref|YP_004457430.1| - 1.6e-20 73.4 1.0 2.8e-20 72.6 1.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_11 PF08241.12 gi|332795930|ref|YP_004457430.1| - 4.5e-13 49.7 0.1 7.6e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332795930|ref|YP_004457430.1| - 5.6e-11 43.0 0.1 1.5e-10 41.6 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332795930|ref|YP_004457430.1| - 8.1e-06 25.7 0.0 3e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332795930|ref|YP_004457430.1| - 5.5e-05 23.8 0.0 0.00013 22.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|332795930|ref|YP_004457430.1| - 8.1e-05 22.3 0.0 0.00014 21.6 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|332795930|ref|YP_004457430.1| - 0.011 15.6 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|332795930|ref|YP_004457430.1| - 0.059 13.4 0.1 0.14 12.2 0.1 1.5 1 1 1 2 2 2 0 Methyltransferase domain MttA_Hcf106 PF02416.16 gi|332795931|ref|YP_004457431.1| - 1.1e-10 40.7 6.9 4.8e-10 38.6 6.9 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family CHD5 PF04420.14 gi|332795931|ref|YP_004457431.1| - 3.6e-05 23.7 3.2 4.2e-05 23.4 3.2 1.0 1 0 0 1 1 1 1 CHD5-like protein DUF4834 PF16118.5 gi|332795931|ref|YP_004457431.1| - 0.00035 21.5 2.6 0.00049 21.0 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) DUF3573 PF12097.8 gi|332795931|ref|YP_004457431.1| - 0.0099 14.7 3.6 0.01 14.7 3.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3573) DUF724 PF05266.14 gi|332795931|ref|YP_004457431.1| - 0.066 13.0 9.9 0.074 12.9 9.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF5320 PF17253.2 gi|332795931|ref|YP_004457431.1| - 0.11 13.6 3.9 0.12 13.4 3.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5320) DUF2203 PF09969.9 gi|332795931|ref|YP_004457431.1| - 0.22 12.2 4.3 0.24 12.1 4.3 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF4140 PF13600.6 gi|332795931|ref|YP_004457431.1| - 0.26 11.7 7.7 0.35 11.3 7.7 1.2 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) THOC7 PF05615.13 gi|332795931|ref|YP_004457431.1| - 0.31 11.3 12.2 0.37 11.1 12.2 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 DUF4446 PF14584.6 gi|332795931|ref|YP_004457431.1| - 0.34 10.9 6.6 0.71 9.8 6.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Atg14 PF10186.9 gi|332795931|ref|YP_004457431.1| - 0.92 8.5 10.9 1 8.4 10.9 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 PCRF PF03462.18 gi|332795931|ref|YP_004457431.1| - 1 9.2 9.3 1.2 8.9 9.3 1.1 1 0 0 1 1 1 0 PCRF domain MttA_Hcf106 PF02416.16 gi|332795932|ref|YP_004457432.1| - 9.2e-06 24.9 2.0 1.6e-05 24.1 2.0 1.6 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4618 PF15397.6 gi|332795932|ref|YP_004457432.1| - 8.4e-05 22.1 0.9 0.00011 21.8 0.9 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) Erp_C PF06780.11 gi|332795932|ref|YP_004457432.1| - 0.00041 20.4 4.1 0.00054 20.0 4.1 1.1 1 0 0 1 1 1 1 Erp protein C-terminus FAM184 PF15665.5 gi|332795932|ref|YP_004457432.1| - 0.005 16.7 1.5 0.0061 16.4 1.5 1.1 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B LUC7 PF03194.15 gi|332795932|ref|YP_004457432.1| - 0.0085 15.8 1.7 0.012 15.3 1.7 1.3 1 0 0 1 1 1 1 LUC7 N_terminus DUF3338 PF11819.8 gi|332795932|ref|YP_004457432.1| - 0.0087 16.0 0.3 2.8 7.9 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3338) Spc7 PF08317.11 gi|332795932|ref|YP_004457432.1| - 0.0099 14.8 1.5 0.011 14.6 1.5 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein FlxA PF14282.6 gi|332795932|ref|YP_004457432.1| - 0.012 15.6 0.5 0.024 14.6 0.2 1.6 2 0 0 2 2 2 0 FlxA-like protein DUF948 PF06103.11 gi|332795932|ref|YP_004457432.1| - 0.013 15.8 0.4 3.1 8.1 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1192 PF06698.11 gi|332795932|ref|YP_004457432.1| - 0.015 15.3 0.3 0.015 15.3 0.3 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) Paralemmin PF03285.15 gi|332795932|ref|YP_004457432.1| - 0.017 14.8 0.6 0.017 14.8 0.6 1.5 2 0 0 2 2 2 0 Paralemmin DNA_topoisoIV PF00521.20 gi|332795932|ref|YP_004457432.1| - 0.019 13.9 1.4 0.023 13.6 1.4 1.0 1 0 0 1 1 1 0 DNA gyrase/topoisomerase IV, subunit A Dor1 PF04124.12 gi|332795932|ref|YP_004457432.1| - 0.019 13.6 0.7 0.024 13.3 0.7 1.0 1 0 0 1 1 1 0 Dor1-like family Rab_bind PF16704.5 gi|332795932|ref|YP_004457432.1| - 0.03 14.4 0.8 0.41 10.7 0.2 2.2 2 0 0 2 2 2 0 Rab binding domain TSC22 PF01166.18 gi|332795932|ref|YP_004457432.1| - 0.038 14.3 4.4 0.074 13.4 1.2 2.2 2 0 0 2 2 2 0 TSC-22/dip/bun family DUF5446 PF17522.2 gi|332795932|ref|YP_004457432.1| - 0.042 14.0 3.7 2.3 8.4 0.6 2.1 2 0 0 2 2 2 0 Family of unknown function (DUF5446) Atg14 PF10186.9 gi|332795932|ref|YP_004457432.1| - 0.045 12.8 1.9 0.056 12.5 1.9 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 HalX PF08663.10 gi|332795932|ref|YP_004457432.1| - 0.051 13.9 1.0 1.8 9.0 0.0 2.1 2 0 0 2 2 2 0 HalX domain DivIC PF04977.15 gi|332795932|ref|YP_004457432.1| - 0.055 13.3 2.2 0.055 13.3 2.2 2.4 1 1 1 2 2 2 0 Septum formation initiator BPS1 PF05633.11 gi|332795932|ref|YP_004457432.1| - 0.058 12.4 2.4 0.071 12.1 2.4 1.0 1 0 0 1 1 1 0 Protein BYPASS1-related BLOC1_2 PF10046.9 gi|332795932|ref|YP_004457432.1| - 0.059 13.7 3.3 1.8 8.9 0.7 2.1 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF641 PF04859.12 gi|332795932|ref|YP_004457432.1| - 0.062 13.6 1.3 0.098 13.0 1.3 1.2 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) ZapB PF06005.12 gi|332795932|ref|YP_004457432.1| - 0.07 13.6 4.0 0.48 10.9 0.8 2.1 2 0 0 2 2 2 0 Cell division protein ZapB Swi5 PF07061.11 gi|332795932|ref|YP_004457432.1| - 0.092 12.8 2.3 0.53 10.4 0.5 2.1 2 0 0 2 2 2 0 Swi5 Cob_adeno_trans PF01923.18 gi|332795932|ref|YP_004457432.1| - 0.093 12.9 0.2 0.11 12.6 0.2 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase DUF1664 PF07889.12 gi|332795932|ref|YP_004457432.1| - 0.1 12.6 1.5 0.18 11.8 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) TMPIT PF07851.13 gi|332795932|ref|YP_004457432.1| - 0.12 11.6 1.0 0.17 11.1 1.0 1.2 1 0 0 1 1 1 0 TMPIT-like protein V-SNARE PF05008.15 gi|332795932|ref|YP_004457432.1| - 0.13 12.7 3.5 0.21 12.0 3.5 1.4 1 1 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus GAPT PF11770.8 gi|332795932|ref|YP_004457432.1| - 0.14 12.0 4.8 0.37 10.6 4.8 1.8 1 1 0 1 1 1 0 GRB2-binding adapter (GAPT) DUF4407 PF14362.6 gi|332795932|ref|YP_004457432.1| - 0.15 11.4 0.4 0.21 10.9 0.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|332795932|ref|YP_004457432.1| - 0.15 12.2 2.0 0.2 11.8 2.0 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family GrpE PF01025.19 gi|332795932|ref|YP_004457432.1| - 0.17 11.6 8.3 1.5 8.5 0.5 2.1 1 1 1 2 2 2 0 GrpE DUF2802 PF10975.8 gi|332795932|ref|YP_004457432.1| - 0.17 12.1 0.9 1 9.5 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) DUF4140 PF13600.6 gi|332795932|ref|YP_004457432.1| - 0.18 12.3 2.3 0.78 10.2 2.3 1.9 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) FlaC_arch PF05377.11 gi|332795932|ref|YP_004457432.1| - 0.21 12.0 4.2 0.26 11.7 0.9 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4790 PF16037.5 gi|332795932|ref|YP_004457432.1| - 0.31 11.5 2.2 0.43 11.1 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4790) PdaC PF13739.6 gi|332795932|ref|YP_004457432.1| - 0.66 11.0 3.5 2 9.5 0.7 2.0 1 1 1 2 2 2 0 Deacetylase PdaC XhlA PF10779.9 gi|332795932|ref|YP_004457432.1| - 0.77 10.0 7.1 0.82 9.9 1.2 2.3 2 0 0 2 2 2 0 Haemolysin XhlA V_ATPase_I PF01496.19 gi|332795932|ref|YP_004457432.1| - 0.83 7.5 4.7 0.57 8.0 3.1 1.5 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF5595 PF18077.1 gi|332795932|ref|YP_004457432.1| - 1.1 9.3 7.6 2.6 8.2 1.9 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) PKcGMP_CC PF16808.5 gi|332795932|ref|YP_004457432.1| - 7.5 6.5 12.3 0.097 12.5 3.4 2.2 3 0 0 3 3 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TatC PF00902.18 gi|332795933|ref|YP_004457433.1| - 8e-47 159.7 18.2 8e-47 159.7 18.2 1.3 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Fer2_3 PF13085.6 gi|332795934|ref|YP_004457434.1| - 2.1e-36 124.2 0.9 2.9e-36 123.8 0.1 1.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|332795934|ref|YP_004457434.1| - 9.2e-11 42.0 1.1 2.4e-10 40.7 0.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332795934|ref|YP_004457434.1| - 2.7e-06 27.8 6.8 3.2e-05 24.4 0.6 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332795934|ref|YP_004457434.1| - 3.8e-05 24.2 3.6 0.00012 22.6 1.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332795934|ref|YP_004457434.1| - 0.00024 21.1 4.0 0.00024 21.1 4.0 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332795934|ref|YP_004457434.1| - 0.00025 21.1 7.0 0.0053 16.9 0.3 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332795934|ref|YP_004457434.1| - 0.00074 19.2 1.6 0.00074 19.2 1.6 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer2 PF00111.27 gi|332795934|ref|YP_004457434.1| - 0.0016 18.3 0.1 0.0016 18.3 0.1 2.4 3 0 0 3 3 3 1 2Fe-2S iron-sulfur cluster binding domain Fer4_16 PF13484.6 gi|332795934|ref|YP_004457434.1| - 0.0048 17.8 3.9 0.0048 17.8 3.9 2.7 2 1 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|332795934|ref|YP_004457434.1| - 0.0072 16.4 0.3 0.0072 16.4 0.3 2.7 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|332795934|ref|YP_004457434.1| - 0.023 14.9 4.0 0.18 12.0 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332795934|ref|YP_004457434.1| - 0.072 13.6 0.6 0.072 13.6 0.6 2.9 4 0 0 4 4 3 0 4Fe-4S binding domain Fer2_4 PF13510.6 gi|332795934|ref|YP_004457434.1| - 0.13 12.3 0.1 0.26 11.4 0.1 1.5 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Sdh_cyt PF01127.22 gi|332795935|ref|YP_004457435.1| - 2.6e-06 27.5 13.6 4.2e-06 26.8 11.6 2.1 1 1 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2955 PF11168.8 gi|332795935|ref|YP_004457435.1| - 0.025 14.4 0.4 0.025 14.4 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2955) Ninjurin PF04923.12 gi|332795935|ref|YP_004457435.1| - 0.051 13.5 0.3 0.12 12.3 0.3 1.7 1 1 0 1 1 1 0 Ninjurin Ferric_reduct PF01794.19 gi|332795935|ref|YP_004457435.1| - 0.13 12.4 10.0 0.63 10.2 10.0 2.1 1 1 0 1 1 1 0 Ferric reductase like transmembrane component DUF373 PF04123.13 gi|332795935|ref|YP_004457435.1| - 0.65 9.4 4.6 0.76 9.2 4.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF373) Ni_hydr_CYTB PF01292.20 gi|332795935|ref|YP_004457435.1| - 1.9 8.1 11.4 12 5.4 11.4 2.0 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF4044 PF13253.6 gi|332795935|ref|YP_004457435.1| - 4.9 6.8 9.1 0.14 11.7 1.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4044) Sdh_cyt PF01127.22 gi|332795936|ref|YP_004457436.1| - 1.2e-06 28.6 4.4 1.4e-06 28.3 4.4 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF805 PF05656.14 gi|332795936|ref|YP_004457436.1| - 0.018 15.5 1.7 0.025 15.0 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF805) ABC_membrane_2 PF06472.15 gi|332795936|ref|YP_004457436.1| - 0.025 14.0 0.4 0.035 13.5 0.4 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region 2 Ferric_reduct PF01794.19 gi|332795936|ref|YP_004457436.1| - 0.082 13.0 3.8 0.24 11.5 3.7 1.8 1 1 0 1 1 1 0 Ferric reductase like transmembrane component Cytomega_TRL10 PF06084.11 gi|332795936|ref|YP_004457436.1| - 2.6 8.0 3.4 1.4 8.9 0.1 2.0 2 0 0 2 2 2 0 Cytomegalovirus TRL10 protein DUF5090 PF17009.5 gi|332795937|ref|YP_004457437.1| - 0.5 10.3 10.2 0.8 9.6 10.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5090) V_ATPase_I PF01496.19 gi|332795940|ref|YP_004457440.1| - 5.1e-21 74.3 30.9 1.1e-18 66.7 10.3 4.0 3 2 1 4 4 4 4 V-type ATPase 116kDa subunit family Herpes_UL36 PF03586.13 gi|332795940|ref|YP_004457440.1| - 0.038 13.3 3.5 0.048 13.0 1.5 1.8 1 1 1 2 2 2 0 Herpesvirus UL36 tegument protein DHHA1 PF02272.19 gi|332795940|ref|YP_004457440.1| - 1.4 9.4 5.2 3.9 7.9 0.4 2.5 1 1 1 2 2 2 0 DHHA1 domain PaREP1 PF05942.11 gi|332795941|ref|YP_004457441.1| - 4.1e-30 104.1 3.5 4.6e-30 103.9 3.5 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332795941|ref|YP_004457441.1| - 0.054 13.6 2.3 0.12 12.5 2.3 1.9 1 1 0 1 1 1 0 HEPN domain OTU PF02338.19 gi|332795941|ref|YP_004457441.1| - 0.12 12.9 0.3 0.22 12.0 0.1 1.5 1 1 0 1 1 1 0 OTU-like cysteine protease PaREP1 PF05942.11 gi|332795942|ref|YP_004457442.1| - 3.4e-28 97.9 3.8 4.4e-28 97.5 3.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332795942|ref|YP_004457442.1| - 0.00098 19.2 6.7 0.022 14.9 6.7 2.2 1 1 0 1 1 1 1 HEPN domain DUF357 PF04010.13 gi|332795942|ref|YP_004457442.1| - 0.012 15.7 2.1 0.068 13.2 0.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF357) DUF2312 PF10073.9 gi|332795942|ref|YP_004457442.1| - 0.03 13.9 0.3 0.03 13.9 0.3 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) YtxH PF12732.7 gi|332795942|ref|YP_004457442.1| - 0.081 13.5 1.2 0.57 10.8 1.2 2.3 1 1 0 1 1 1 0 YtxH-like protein DUF5339 PF17274.2 gi|332795942|ref|YP_004457442.1| - 0.3 12.0 7.7 1.9 9.4 0.8 2.8 3 1 0 3 3 3 0 Family of unknown function (DUF5339) E1-E2_ATPase PF00122.20 gi|332795944|ref|YP_004457444.1| - 3.4e-47 160.3 2.3 1.1e-46 158.6 2.3 1.9 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|332795944|ref|YP_004457444.1| - 3.3e-33 115.8 0.9 6.9e-33 114.7 0.6 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|332795944|ref|YP_004457444.1| - 3.4e-19 69.0 9.1 2.2e-14 53.6 3.2 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|332795944|ref|YP_004457444.1| - 1.5e-05 24.9 9.0 0.006 16.4 0.3 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase HTH_36 PF13730.6 gi|332795944|ref|YP_004457444.1| - 0.018 15.0 0.9 1.3 9.1 0.0 3.2 3 0 0 3 3 3 0 Helix-turn-helix domain DUF1359 PF07097.11 gi|332795944|ref|YP_004457444.1| - 0.02 15.1 0.6 0.1 12.8 0.6 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1359) HAD PF12710.7 gi|332795944|ref|YP_004457444.1| - 0.034 14.5 0.1 0.096 13.1 0.1 1.8 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Ribosomal_L9_C PF03948.14 gi|332795944|ref|YP_004457444.1| - 0.04 14.4 6.2 4.7 7.7 1.6 3.7 2 1 0 2 2 2 0 Ribosomal protein L9, C-terminal domain Hydrolase_6 PF13344.6 gi|332795944|ref|YP_004457444.1| - 0.046 13.8 0.0 0.52 10.5 0.0 2.8 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase YHS PF04945.13 gi|332795945|ref|YP_004457445.1| - 1.3e-20 73.2 3.6 1.6e-20 72.9 3.6 1.0 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|332795945|ref|YP_004457445.1| - 4.4e-05 23.3 0.3 6.7e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Arc_trans_TRASH PF08394.10 gi|332795945|ref|YP_004457445.1| - 0.00011 22.5 1.3 0.00015 22.0 1.3 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain FAP206 PF12018.8 gi|332795945|ref|YP_004457445.1| - 0.00088 18.9 0.0 0.00091 18.8 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function ATPase-cat_bd PF12156.8 gi|332795945|ref|YP_004457445.1| - 0.024 15.4 0.1 0.027 15.2 0.1 1.1 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase NosL PF05573.12 gi|332795945|ref|YP_004457445.1| - 0.054 13.8 0.2 0.063 13.6 0.2 1.1 1 0 0 1 1 1 0 NosL DUF2116 PF09889.9 gi|332795945|ref|YP_004457445.1| - 0.15 12.0 0.9 0.44 10.6 0.9 1.8 1 1 0 1 1 1 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Arc_trans_TRASH PF08394.10 gi|332795946|ref|YP_004457446.1| - 2.6e-14 53.3 6.2 5.8e-14 52.1 6.2 1.6 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_24 PF13412.6 gi|332795946|ref|YP_004457446.1| - 8.6e-11 41.2 0.2 1.6e-10 40.3 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332795946|ref|YP_004457446.1| - 4e-09 36.3 0.0 7e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|332795946|ref|YP_004457446.1| - 1.2e-08 34.7 0.0 2.1e-08 33.9 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|332795946|ref|YP_004457446.1| - 1.6e-08 34.1 0.0 2.9e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|332795946|ref|YP_004457446.1| - 3.3e-08 33.4 0.7 8.4e-08 32.1 0.1 1.9 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|332795946|ref|YP_004457446.1| - 3.1e-07 30.1 0.0 6.1e-07 29.2 0.0 1.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|332795946|ref|YP_004457446.1| - 5.1e-07 29.4 0.0 7.6e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|332795946|ref|YP_004457446.1| - 7e-07 29.0 0.2 1.3e-06 28.1 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Tnp_ISL3 PF13542.6 gi|332795946|ref|YP_004457446.1| - 5.6e-06 25.7 0.0 8.9e-06 25.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_5 PF01022.20 gi|332795946|ref|YP_004457446.1| - 6.3e-06 26.0 0.1 1.3e-05 24.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|332795946|ref|YP_004457446.1| - 1.5e-05 24.9 0.0 2.5e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|332795946|ref|YP_004457446.1| - 6.8e-05 22.8 0.0 0.00013 21.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_7 PF02796.15 gi|332795946|ref|YP_004457446.1| - 0.00014 21.9 0.0 0.00025 21.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_36 PF13730.6 gi|332795946|ref|YP_004457446.1| - 0.0002 21.3 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|332795946|ref|YP_004457446.1| - 0.00029 20.9 0.1 0.00055 20.1 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4 PF04545.16 gi|332795946|ref|YP_004457446.1| - 0.00037 19.9 0.2 0.00065 19.2 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.21 gi|332795946|ref|YP_004457446.1| - 0.0004 20.0 0.0 0.00065 19.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|332795946|ref|YP_004457446.1| - 0.00048 20.2 0.0 0.00085 19.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|332795946|ref|YP_004457446.1| - 0.00055 20.3 0.2 0.0015 18.8 0.0 1.9 2 0 0 2 2 1 1 Penicillinase repressor HTH_DeoR PF08220.12 gi|332795946|ref|YP_004457446.1| - 0.00061 19.5 0.4 0.0033 17.1 0.0 2.0 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|332795946|ref|YP_004457446.1| - 0.00081 19.4 0.2 0.0025 17.8 0.0 1.9 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 gi|332795946|ref|YP_004457446.1| - 0.00094 18.9 0.0 0.0017 18.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_9 PF08221.11 gi|332795946|ref|YP_004457446.1| - 0.0015 18.6 0.0 0.0036 17.4 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain Rrf2 PF02082.20 gi|332795946|ref|YP_004457446.1| - 0.0016 18.8 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|332795946|ref|YP_004457446.1| - 0.0017 18.4 0.0 0.0032 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|332795946|ref|YP_004457446.1| - 0.0018 18.4 0.2 0.028 14.6 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain Mga PF05043.13 gi|332795946|ref|YP_004457446.1| - 0.0034 17.9 0.3 0.0088 16.6 0.1 1.7 2 0 0 2 2 1 1 Mga helix-turn-helix domain HTH_6 PF01418.17 gi|332795946|ref|YP_004457446.1| - 0.0036 17.2 0.2 0.0075 16.2 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain, rpiR family TFIIE_alpha PF02002.17 gi|332795946|ref|YP_004457446.1| - 0.0068 16.3 0.5 0.011 15.6 0.1 1.6 2 0 0 2 2 1 1 TFIIE alpha subunit TnsD PF15978.5 gi|332795946|ref|YP_004457446.1| - 0.011 14.8 0.0 0.012 14.6 0.0 1.2 1 0 0 1 1 1 0 Tn7-like transposition protein D RPA_C PF08784.11 gi|332795946|ref|YP_004457446.1| - 0.011 16.4 0.0 0.018 15.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein A C terminal IF2_N PF04760.15 gi|332795946|ref|YP_004457446.1| - 0.012 15.5 0.3 0.027 14.3 0.0 1.8 2 0 0 2 2 1 0 Translation initiation factor IF-2, N-terminal region Crp PF00325.20 gi|332795946|ref|YP_004457446.1| - 0.017 14.8 0.1 0.046 13.4 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, crp family HTH_22 PF13309.6 gi|332795946|ref|YP_004457446.1| - 0.023 14.8 0.1 0.18 11.9 0.0 2.2 1 1 1 2 2 2 0 HTH domain Trp_repressor PF01371.19 gi|332795946|ref|YP_004457446.1| - 0.026 14.7 0.1 0.055 13.6 0.1 1.5 1 0 0 1 1 1 0 Trp repressor protein DUF4788 PF16032.5 gi|332795946|ref|YP_004457446.1| - 0.042 12.8 0.2 0.14 11.1 0.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4788) Sigma70_r4_2 PF08281.12 gi|332795946|ref|YP_004457446.1| - 0.043 13.5 0.0 0.17 11.6 0.0 2.0 2 0 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.19 gi|332795946|ref|YP_004457446.1| - 0.045 13.3 0.0 0.1 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family LacI PF00356.21 gi|332795946|ref|YP_004457446.1| - 0.051 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_3 PF01381.22 gi|332795946|ref|YP_004457446.1| - 0.053 13.6 0.1 0.095 12.8 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_32 PF13565.6 gi|332795946|ref|YP_004457446.1| - 0.06 14.0 0.0 0.15 12.7 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain DUF977 PF06163.11 gi|332795946|ref|YP_004457446.1| - 0.076 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HTH_40 PF14493.6 gi|332795946|ref|YP_004457446.1| - 0.088 13.3 0.2 0.23 12.0 0.2 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_GP20 PF06810.11 gi|332795946|ref|YP_004457446.1| - 0.11 12.4 1.3 0.16 11.8 1.3 1.5 1 1 0 1 1 1 0 Phage minor structural protein GP20 HTH_31 PF13560.6 gi|332795946|ref|YP_004457446.1| - 0.17 12.3 0.0 0.27 11.6 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.23 gi|332795946|ref|YP_004457446.1| - 0.19 11.6 0.0 0.36 10.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_1 PF00126.27 gi|332795946|ref|YP_004457446.1| - 0.3 11.1 0.5 0.62 10.1 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Polbeta PF18765.1 gi|332795947|ref|YP_004457447.1| - 3.8e-09 36.5 0.5 4.8e-09 36.2 0.5 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|332795947|ref|YP_004457447.1| - 1.1e-08 35.3 0.3 1.6e-08 34.7 0.3 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain HEPN PF05168.14 gi|332795948|ref|YP_004457448.1| - 5.4e-14 52.3 2.0 6.1e-14 52.2 2.0 1.0 1 0 0 1 1 1 1 HEPN domain DUF3080 PF11279.8 gi|332795948|ref|YP_004457448.1| - 0.047 12.9 0.4 0.056 12.7 0.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3080) DUF3336 PF11815.8 gi|332795948|ref|YP_004457448.1| - 0.085 12.6 1.4 0.089 12.5 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3336) DHDPS PF00701.22 gi|332795949|ref|YP_004457449.1| - 5.6e-44 150.0 0.1 6.3e-44 149.8 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family MR_MLE_C PF13378.6 gi|332795950|ref|YP_004457450.1| - 1e-56 192.0 0.0 1.4e-56 191.5 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|332795950|ref|YP_004457450.1| - 1.8e-14 53.9 0.0 5.2e-14 52.5 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain NTPase_1 PF03266.15 gi|332795951|ref|YP_004457451.1| - 2.2e-49 167.6 1.6 2.6e-49 167.4 1.6 1.0 1 0 0 1 1 1 1 NTPase AAA PF00004.29 gi|332795951|ref|YP_004457451.1| - 9.9e-06 26.0 0.1 1.6e-05 25.3 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|332795951|ref|YP_004457451.1| - 1.7e-05 25.4 0.3 0.00011 22.7 0.3 2.0 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|332795951|ref|YP_004457451.1| - 5e-05 23.7 1.1 0.0064 16.8 0.1 2.6 3 0 0 3 3 3 1 AAA domain ATPase_2 PF01637.18 gi|332795951|ref|YP_004457451.1| - 0.00013 22.0 1.0 0.00032 20.7 1.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|332795951|ref|YP_004457451.1| - 0.00032 20.5 0.2 0.0011 18.7 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|332795951|ref|YP_004457451.1| - 0.0005 20.1 1.2 0.018 15.1 1.2 2.7 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|332795951|ref|YP_004457451.1| - 0.00078 19.5 0.5 0.011 15.7 0.1 2.3 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|332795951|ref|YP_004457451.1| - 0.0011 19.3 0.0 0.0016 18.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.19 gi|332795951|ref|YP_004457451.1| - 0.0013 18.4 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|332795951|ref|YP_004457451.1| - 0.0019 18.5 0.1 0.0065 16.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|332795951|ref|YP_004457451.1| - 0.0038 16.5 0.0 0.0039 16.4 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain MobB PF03205.14 gi|332795951|ref|YP_004457451.1| - 0.0053 16.7 0.1 0.013 15.4 0.1 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.12 gi|332795951|ref|YP_004457451.1| - 0.0065 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain DUF2075 PF09848.9 gi|332795951|ref|YP_004457451.1| - 0.0087 15.3 0.2 0.0096 15.2 0.2 1.3 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) MeaB PF03308.16 gi|332795951|ref|YP_004457451.1| - 0.0091 15.0 0.1 0.014 14.4 0.1 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_24 PF13479.6 gi|332795951|ref|YP_004457451.1| - 0.013 15.2 1.6 0.067 12.9 1.6 2.2 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|332795951|ref|YP_004457451.1| - 0.015 15.4 0.4 0.09 12.8 0.1 2.0 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain RNA_helicase PF00910.22 gi|332795951|ref|YP_004457451.1| - 0.016 15.6 0.1 0.046 14.1 0.1 2.0 1 1 0 1 1 1 0 RNA helicase APS_kinase PF01583.20 gi|332795951|ref|YP_004457451.1| - 0.017 15.0 0.0 0.033 14.1 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase IstB_IS21 PF01695.17 gi|332795951|ref|YP_004457451.1| - 0.021 14.6 0.1 1.2 8.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|332795951|ref|YP_004457451.1| - 0.033 14.0 0.1 0.3 10.8 0.0 2.1 2 1 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|332795951|ref|YP_004457451.1| - 0.035 13.6 0.1 0.07 12.6 0.0 1.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_26 PF13500.6 gi|332795951|ref|YP_004457451.1| - 0.042 13.7 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|332795951|ref|YP_004457451.1| - 0.052 14.1 0.3 0.09 13.3 0.3 1.6 1 1 0 1 1 1 0 ABC transporter Zeta_toxin PF06414.12 gi|332795951|ref|YP_004457451.1| - 0.059 12.6 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|332795951|ref|YP_004457451.1| - 0.06 13.6 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.6 gi|332795951|ref|YP_004457451.1| - 0.061 13.7 0.3 0.18 12.2 0.0 1.9 3 0 0 3 3 2 0 AAA domain AAA_11 PF13086.6 gi|332795951|ref|YP_004457451.1| - 0.089 12.6 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain Pox_A32 PF04665.12 gi|332795951|ref|YP_004457451.1| - 0.091 12.2 0.1 2.1 7.7 0.0 2.0 2 0 0 2 2 2 0 Poxvirus A32 protein Thymidylate_kin PF02223.17 gi|332795951|ref|YP_004457451.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase MMR_HSR1 PF01926.23 gi|332795951|ref|YP_004457451.1| - 0.11 12.6 0.4 0.3 11.2 0.0 1.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase DAP3 PF10236.9 gi|332795951|ref|YP_004457451.1| - 0.12 11.5 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal death-associated protein 3 AAA_29 PF13555.6 gi|332795951|ref|YP_004457451.1| - 0.2 11.4 0.0 0.43 10.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MazE_antitoxin PF04014.18 gi|332795953|ref|YP_004457453.1| - 7.5e-14 51.3 2.4 9.5e-14 50.9 1.9 1.4 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|332795953|ref|YP_004457453.1| - 0.022 14.9 0.2 0.068 13.3 0.1 1.7 2 0 0 2 2 2 0 AbrB-like transcriptional regulator PrlF_antitoxin PF15937.5 gi|332795953|ref|YP_004457453.1| - 0.042 14.3 0.1 0.053 14.0 0.1 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin Thump_like PF18096.1 gi|332795953|ref|YP_004457453.1| - 0.056 13.4 0.6 0.084 12.8 0.1 1.6 1 1 0 1 1 1 0 THUMP domain-like CDC48_N PF02359.18 gi|332795953|ref|YP_004457453.1| - 0.068 13.4 0.1 0.083 13.1 0.1 1.3 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain PIN PF01850.21 gi|332795954|ref|YP_004457454.1| - 9.1e-19 68.2 0.1 1e-18 68.0 0.1 1.0 1 0 0 1 1 1 1 PIN domain Glyco_hydro_15 PF00723.21 gi|332795955|ref|YP_004457455.1| - 1.7e-53 182.0 0.0 3.9e-49 167.6 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.6 gi|332795955|ref|YP_004457455.1| - 0.0038 17.7 0.0 0.015 15.8 0.0 1.8 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|332795955|ref|YP_004457455.1| - 0.0057 17.2 0.0 0.037 14.6 0.0 2.2 2 0 0 2 2 2 1 Tetratricopeptide repeat TPR_8 PF13181.6 gi|332795955|ref|YP_004457455.1| - 0.013 15.6 0.0 0.65 10.4 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Glyco_hydro_125 PF06824.11 gi|332795955|ref|YP_004457455.1| - 0.041 12.8 0.0 1.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Metal-independent alpha-mannosidase (GH125) PCMT PF01135.19 gi|332795956|ref|YP_004457456.1| - 2.1e-37 128.9 0.0 2.5e-37 128.7 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RrnaAD PF00398.20 gi|332795956|ref|YP_004457456.1| - 2.8e-11 43.0 0.1 4.5e-11 42.3 0.1 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|332795956|ref|YP_004457456.1| - 3.8e-07 30.7 0.0 7.2e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332795956|ref|YP_004457456.1| - 3.9e-05 23.5 0.0 5.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332795956|ref|YP_004457456.1| - 9.6e-05 23.0 0.0 0.00019 22.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|332795956|ref|YP_004457456.1| - 0.00017 21.0 0.0 0.00028 20.3 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Met_10 PF02475.16 gi|332795956|ref|YP_004457456.1| - 0.004 16.9 0.0 0.006 16.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_23 PF13489.6 gi|332795956|ref|YP_004457456.1| - 0.0052 16.6 0.0 0.0069 16.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|332795956|ref|YP_004457456.1| - 0.02 14.0 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin DOT1 PF08123.13 gi|332795956|ref|YP_004457456.1| - 0.027 14.0 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Ubie_methyltran PF01209.18 gi|332795956|ref|YP_004457456.1| - 0.051 12.9 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|332795956|ref|YP_004457456.1| - 0.059 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain DUF86 PF01934.17 gi|332795957|ref|YP_004457457.1| - 1.2e-15 57.4 0.5 1.4e-15 57.2 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF86 CtsR_C PF17727.1 gi|332795957|ref|YP_004457457.1| - 0.0016 18.5 0.1 0.0042 17.2 0.0 1.8 2 0 0 2 2 2 1 CtsR C-terminal dimerization domain NTase_sub_bind PF08780.11 gi|332795957|ref|YP_004457457.1| - 0.023 14.6 0.0 0.028 14.4 0.0 1.4 1 1 0 1 1 1 0 Nucleotidyltransferase substrate binding protein like Arena_ncap_C PF17290.2 gi|332795957|ref|YP_004457457.1| - 0.11 11.9 0.0 0.25 10.6 0.0 1.5 1 1 0 1 1 1 0 Arenavirus nucleocapsid C-terminal domain Polbeta PF18765.1 gi|332795958|ref|YP_004457458.1| - 1e-15 57.5 1.2 1.4e-15 57.1 1.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|332795958|ref|YP_004457458.1| - 0.00027 21.2 0.4 0.00035 20.8 0.4 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain MFS_1 PF07690.16 gi|332795959|ref|YP_004457459.1| - 4e-52 177.3 49.0 4e-52 177.3 49.0 1.8 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332795959|ref|YP_004457459.1| - 9.4e-08 31.3 15.5 9.4e-08 31.3 15.5 2.7 2 2 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|332795959|ref|YP_004457459.1| - 3.3e-05 22.5 20.6 0.00014 20.4 11.8 2.4 2 0 0 2 2 2 2 Transmembrane secretion effector Methyltransf_11 PF08241.12 gi|332795960|ref|YP_004457460.1| - 6.2e-18 65.2 0.0 8.4e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332795960|ref|YP_004457460.1| - 2.7e-15 56.9 0.0 3.8e-15 56.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332795960|ref|YP_004457460.1| - 2.7e-15 56.5 0.0 3.3e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332795960|ref|YP_004457460.1| - 1.4e-10 41.8 0.0 1.9e-10 41.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|332795960|ref|YP_004457460.1| - 4.4e-09 36.4 0.0 5.1e-09 36.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|332795960|ref|YP_004457460.1| - 1.5e-05 24.6 0.0 1.9e-05 24.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|332795960|ref|YP_004457460.1| - 1.6e-05 24.4 0.0 1.9e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|332795960|ref|YP_004457460.1| - 0.00022 21.3 0.0 0.00027 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.18 gi|332795960|ref|YP_004457460.1| - 0.00094 18.5 0.0 0.001 18.4 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_24 PF13578.6 gi|332795960|ref|YP_004457460.1| - 0.0039 18.2 0.0 0.0056 17.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain CheR PF01739.18 gi|332795960|ref|YP_004457460.1| - 0.0061 16.1 0.0 0.0084 15.6 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain MetW PF07021.12 gi|332795960|ref|YP_004457460.1| - 0.015 14.9 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|332795960|ref|YP_004457460.1| - 0.02 14.0 0.0 0.025 13.6 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FtsJ PF01728.19 gi|332795960|ref|YP_004457460.1| - 0.033 14.3 0.0 0.052 13.7 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase HisK_sensor PF18698.1 gi|332795960|ref|YP_004457460.1| - 0.036 14.5 0.0 0.084 13.3 0.0 1.5 2 0 0 2 2 2 0 Histidine kinase sensor domain ANAPC3 PF12895.7 gi|332795960|ref|YP_004457460.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Anaphase-promoting complex, cyclosome, subunit 3 AA_permease_2 PF13520.6 gi|332795961|ref|YP_004457461.1| - 1.4e-40 139.4 43.2 2.8e-40 138.5 43.2 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795961|ref|YP_004457461.1| - 5.5e-40 137.4 41.2 5.5e-40 137.4 41.2 1.4 2 0 0 2 2 2 1 Amino acid permease Spore_permease PF03845.13 gi|332795961|ref|YP_004457461.1| - 1.4e-12 47.1 22.4 1.4e-12 47.1 22.4 1.6 2 0 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.6 gi|332795961|ref|YP_004457461.1| - 0.023 14.8 0.2 0.023 14.8 0.2 4.3 5 1 1 6 6 6 0 C-terminus of AA_permease Shisa PF13908.6 gi|332795961|ref|YP_004457461.1| - 0.47 10.7 3.9 0.36 11.0 0.3 2.4 1 1 1 2 2 2 0 Wnt and FGF inhibitory regulator NTP_transf_2 PF01909.23 gi|332795962|ref|YP_004457462.1| - 2.2e-07 31.1 0.0 2.8e-07 30.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332795962|ref|YP_004457462.1| - 2.4e-06 27.5 0.0 2.8e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MFA1_2 PF17317.2 gi|332795962|ref|YP_004457462.1| - 0.022 14.5 0.2 0.034 13.9 0.2 1.3 1 0 0 1 1 1 0 Mating hormone A-factor 1&2 Aldedh PF00171.22 gi|332795964|ref|YP_004457464.1| - 5.4e-165 549.4 0.0 6.1e-165 549.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|332795964|ref|YP_004457464.1| - 0.1 12.6 0.3 0.2 11.7 0.3 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF5338 PF17273.2 gi|332795964|ref|YP_004457464.1| - 0.12 12.5 0.1 0.24 11.5 0.1 1.5 1 0 0 1 1 1 0 Family of unknown function (DUF5338) AA_permease_2 PF13520.6 gi|332795965|ref|YP_004457465.1| - 6.8e-25 87.8 50.5 1.5e-24 86.6 50.8 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795965|ref|YP_004457465.1| - 1.4e-09 37.1 51.5 2.8e-09 36.1 51.5 1.5 1 1 0 1 1 1 1 Amino acid permease Polyketide_cyc2 PF10604.9 gi|332795966|ref|YP_004457466.1| - 2.4e-05 24.7 0.0 2.5e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|332795966|ref|YP_004457466.1| - 0.016 15.4 0.0 0.022 15.0 0.0 1.4 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF237 PF03072.14 gi|332795966|ref|YP_004457466.1| - 0.084 12.9 0.3 0.41 10.7 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF237) HTH_11 PF08279.12 gi|332795966|ref|YP_004457466.1| - 0.088 12.8 0.0 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 HTH domain RNA_POL_M_15KD PF02150.16 gi|332795967|ref|YP_004457467.1| - 3e-12 46.2 11.8 7.1e-07 29.0 4.7 2.2 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit DZR PF12773.7 gi|332795967|ref|YP_004457467.1| - 4.1e-08 33.1 5.5 0.00013 21.9 1.2 2.2 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 gi|332795967|ref|YP_004457467.1| - 1.7e-07 31.1 11.8 6.3e-05 22.9 0.4 3.1 2 1 1 3 3 3 2 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|332795967|ref|YP_004457467.1| - 5.4e-07 29.2 10.8 9.8e-05 21.9 3.5 3.0 2 2 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.6 gi|332795967|ref|YP_004457467.1| - 1.6e-06 27.3 15.3 4.9e-05 22.6 4.4 3.0 2 1 0 2 2 2 2 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|332795967|ref|YP_004457467.1| - 5.9e-06 26.2 4.6 0.025 14.6 0.2 2.1 2 0 0 2 2 2 2 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|332795967|ref|YP_004457467.1| - 6.8e-06 25.9 10.2 0.0011 18.8 1.6 2.6 2 1 1 3 3 3 3 Putative transposase DNA-binding domain IBR PF01485.21 gi|332795967|ref|YP_004457467.1| - 9.7e-06 25.7 7.5 0.017 15.4 3.4 2.2 2 0 0 2 2 2 2 IBR domain, a half RING-finger domain Nudix_N_2 PF14803.6 gi|332795967|ref|YP_004457467.1| - 2.1e-05 24.3 13.4 0.088 12.7 1.7 3.9 3 1 0 3 3 3 2 Nudix N-terminal UPF0547 PF10571.9 gi|332795967|ref|YP_004457467.1| - 0.00035 20.6 14.5 2.2 8.4 0.2 4.1 4 0 0 4 4 4 2 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|332795967|ref|YP_004457467.1| - 0.00061 19.3 2.8 0.00061 19.3 2.8 3.2 2 1 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|332795967|ref|YP_004457467.1| - 0.00084 19.0 22.1 0.033 13.9 9.0 3.8 2 2 0 2 2 2 1 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|332795967|ref|YP_004457467.1| - 0.00093 19.1 6.8 0.005 16.7 0.7 3.1 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 DUF2318 PF10080.9 gi|332795967|ref|YP_004457467.1| - 0.0014 18.7 7.1 0.021 14.9 0.5 2.1 1 1 1 2 2 2 1 Predicted membrane protein (DUF2318) DNA_RNApol_7kD PF03604.13 gi|332795967|ref|YP_004457467.1| - 0.0017 18.0 12.0 0.0092 15.6 3.0 2.6 2 1 0 2 2 2 1 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 gi|332795967|ref|YP_004457467.1| - 0.004 16.8 11.0 0.83 9.4 0.1 3.4 3 1 0 3 3 3 1 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|332795967|ref|YP_004457467.1| - 0.0075 16.4 16.3 4.9 7.3 1.1 4.1 3 1 0 3 3 3 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|332795967|ref|YP_004457467.1| - 0.0083 15.9 15.4 0.49 10.2 3.3 3.5 3 1 0 3 3 3 1 Topoisomerase DNA binding C4 zinc finger NMD3 PF04981.13 gi|332795967|ref|YP_004457467.1| - 0.011 15.2 3.5 0.025 14.0 3.5 1.6 1 1 0 1 1 1 0 NMD3 family HypA PF01155.19 gi|332795967|ref|YP_004457467.1| - 0.02 14.9 8.5 0.15 12.1 1.4 2.3 1 1 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE PF01363.21 gi|332795967|ref|YP_004457467.1| - 0.026 14.6 0.4 0.026 14.6 0.4 2.6 2 1 0 2 2 2 0 FYVE zinc finger Zn_Tnp_IS91 PF14319.6 gi|332795967|ref|YP_004457467.1| - 0.032 14.3 7.8 0.4 10.7 0.2 2.7 1 1 1 2 2 2 0 Transposase zinc-binding domain TackOD1 PF18551.1 gi|332795967|ref|YP_004457467.1| - 0.038 13.7 6.0 0.39 10.3 6.0 2.1 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-ACC PF17848.1 gi|332795967|ref|YP_004457467.1| - 0.041 14.0 16.1 8.6 6.5 7.5 4.1 3 1 0 3 3 3 0 Acetyl-coA carboxylase zinc finger domain PhnA_Zn_Ribbon PF08274.12 gi|332795967|ref|YP_004457467.1| - 0.057 13.4 2.8 0.057 13.4 2.8 3.3 3 1 0 3 3 2 0 PhnA Zinc-Ribbon PADR1 PF08063.12 gi|332795967|ref|YP_004457467.1| - 0.065 13.0 1.0 0.065 13.0 1.0 2.9 2 1 0 2 2 2 0 PADR1 (NUC008) domain DUF35_N PF12172.8 gi|332795967|ref|YP_004457467.1| - 0.083 12.8 10.5 14 5.7 0.1 4.1 4 0 0 4 4 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) C1_1 PF00130.22 gi|332795967|ref|YP_004457467.1| - 0.086 12.7 8.6 0.39 10.7 0.7 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cys_rich_CPCC PF14206.6 gi|332795967|ref|YP_004457467.1| - 0.088 12.6 6.3 0.14 12.0 0.1 2.6 2 1 0 2 2 2 0 Cysteine-rich CPCC zinc_ribbon_4 PF13717.6 gi|332795967|ref|YP_004457467.1| - 0.11 12.5 15.3 2.9 7.9 0.2 4.1 2 2 1 3 3 3 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|332795967|ref|YP_004457467.1| - 0.12 12.6 12.4 0.75 10.0 4.4 2.4 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-CCHC_5 PF14787.6 gi|332795967|ref|YP_004457467.1| - 0.12 12.1 9.8 0.95 9.2 0.4 3.4 3 0 0 3 3 3 0 GAG-polyprotein viral zinc-finger zf_UBZ PF18439.1 gi|332795967|ref|YP_004457467.1| - 0.13 11.9 13.4 2.6 7.7 0.2 4.3 5 0 0 5 5 4 0 Ubiquitin-Binding Zinc Finger TFIIS_C PF01096.18 gi|332795967|ref|YP_004457467.1| - 0.15 12.0 13.9 17 5.3 0.3 4.2 4 0 0 4 4 4 0 Transcription factor S-II (TFIIS) Ribosomal_L37e PF01907.19 gi|332795967|ref|YP_004457467.1| - 0.23 11.6 11.7 2.8 8.2 3.2 2.6 2 2 0 2 2 2 0 Ribosomal protein L37e DNA_ligase_ZBD PF03119.16 gi|332795967|ref|YP_004457467.1| - 0.24 11.5 14.2 2 8.5 2.3 3.5 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.6 gi|332795967|ref|YP_004457467.1| - 0.28 11.9 19.7 2.3 9.0 0.5 4.1 2 2 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_L32p PF01783.23 gi|332795967|ref|YP_004457467.1| - 0.32 11.3 9.9 0.22 11.8 1.3 2.8 2 1 0 2 2 2 0 Ribosomal L32p protein family zf_CopZ PF18423.1 gi|332795967|ref|YP_004457467.1| - 0.33 10.9 11.4 0.35 10.8 0.1 3.5 4 0 0 4 4 3 0 Zinc binding domain C1_2 PF03107.16 gi|332795967|ref|YP_004457467.1| - 0.38 11.1 0.1 0.38 11.1 0.1 2.3 2 0 0 2 2 2 0 C1 domain zf-IS66 PF13005.7 gi|332795967|ref|YP_004457467.1| - 0.5 10.8 19.0 2.6 8.5 0.2 4.1 2 2 2 4 4 4 0 zinc-finger binding domain of transposase IS66 CpXC PF14353.6 gi|332795967|ref|YP_004457467.1| - 0.56 10.3 10.3 1.7 8.7 0.1 3.6 1 1 3 4 4 4 0 CpXC protein zinc_ribbon_15 PF17032.5 gi|332795967|ref|YP_004457467.1| - 0.65 10.8 10.5 1.9 9.3 3.3 2.6 1 1 1 2 2 2 0 zinc-ribbon family zf-FPG_IleRS PF06827.14 gi|332795967|ref|YP_004457467.1| - 0.8 9.6 0.0 0.8 9.6 0.0 3.8 4 1 0 4 4 3 0 Zinc finger found in FPG and IleRS NOB1_Zn_bind PF08772.11 gi|332795967|ref|YP_004457467.1| - 0.84 9.8 16.8 3.5 7.9 0.5 3.8 1 1 2 4 4 4 0 Nin one binding (NOB1) Zn-ribbon like PriA_CRR PF18319.1 gi|332795967|ref|YP_004457467.1| - 0.84 9.7 9.0 10 6.2 0.2 3.8 2 2 0 2 2 2 0 PriA DNA helicase Cys-rich region (CRR) domain zinc_ribbon_9 PF14369.6 gi|332795967|ref|YP_004457467.1| - 0.97 9.7 13.6 1.2 9.5 0.0 3.5 3 1 1 4 4 3 0 zinc-ribbon NRDD PF13597.6 gi|332795967|ref|YP_004457467.1| - 1.1 7.9 9.6 0.3 9.8 1.8 2.0 1 1 0 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-Mss51 PF13824.6 gi|332795967|ref|YP_004457467.1| - 1.3 9.2 14.4 1.3 9.2 3.9 3.0 2 2 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HIT PF04438.16 gi|332795967|ref|YP_004457467.1| - 1.3 8.9 16.8 1.1 9.2 0.9 4.0 4 0 0 4 4 4 0 HIT zinc finger DUF4776 PF16003.5 gi|332795967|ref|YP_004457467.1| - 1.5 7.7 7.1 0.082 11.9 0.6 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4776) zf-TFIIB PF13453.6 gi|332795967|ref|YP_004457467.1| - 1.6 8.1 15.3 2.6 7.5 0.2 3.6 2 2 2 4 4 4 0 Transcription factor zinc-finger RPA_interact_C PF14768.6 gi|332795967|ref|YP_004457467.1| - 1.8 9.2 5.2 14 6.3 0.7 2.2 2 0 0 2 2 2 0 Replication protein A interacting C-terminal Rubredoxin PF00301.20 gi|332795967|ref|YP_004457467.1| - 2.2 8.4 16.2 2.7 8.1 1.1 4.0 4 0 0 4 4 4 0 Rubredoxin zf-C2H2_9 PF16293.5 gi|332795967|ref|YP_004457467.1| - 2.2 8.2 3.8 36 4.3 0.0 3.0 3 0 0 3 3 3 0 C2H2 type zinc-finger (1 copy) Lar_restr_allev PF14354.6 gi|332795967|ref|YP_004457467.1| - 2.3 8.7 15.2 4 7.9 2.0 3.3 2 2 0 2 2 2 0 Restriction alleviation protein Lar Peptidase_C74 PF12387.8 gi|332795967|ref|YP_004457467.1| - 2.4 7.6 6.9 1.6 8.2 0.2 2.5 1 1 0 2 2 2 0 Pestivirus NS2 peptidase RecR PF02132.15 gi|332795967|ref|YP_004457467.1| - 2.6 7.7 9.4 11 5.7 1.2 3.5 3 1 0 3 3 3 0 RecR protein zf-RRN7 PF11781.8 gi|332795967|ref|YP_004457467.1| - 3 7.6 11.4 33 4.3 0.0 4.7 5 0 0 5 5 5 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Cys_rich_KTR PF14205.6 gi|332795967|ref|YP_004457467.1| - 4.4 7.2 12.1 26 4.7 0.0 3.3 3 0 0 3 3 3 0 Cysteine-rich KTR Rubredoxin_2 PF18073.1 gi|332795967|ref|YP_004457467.1| - 5 6.9 18.2 3.4 7.5 1.0 4.1 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-tcix PF14952.6 gi|332795967|ref|YP_004457467.1| - 7.9 6.2 18.3 1.7 8.3 0.4 4.0 4 0 0 4 4 4 0 Putative treble-clef, zinc-finger, Zn-binding Zn_Tnp_IS1 PF03811.13 gi|332795967|ref|YP_004457467.1| - 8.5 6.2 14.8 5.2 6.9 3.5 4.0 4 1 0 4 4 3 0 InsA N-terminal domain YhfH PF14149.6 gi|332795967|ref|YP_004457467.1| - 8.9 6.4 17.9 10 6.2 4.7 4.0 2 2 2 4 4 4 0 YhfH-like protein DUF1936 PF09151.10 gi|332795967|ref|YP_004457467.1| - 9.4 6.2 19.5 6.7 6.7 0.7 4.2 3 1 1 4 4 4 0 Domain of unknown function (DUF1936) DUF302 PF03625.14 gi|332795968|ref|YP_004457468.1| - 1.9e-16 59.7 0.0 2.7e-16 59.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 MxiM PF11441.8 gi|332795968|ref|YP_004457468.1| - 0.024 14.9 0.2 0.034 14.4 0.2 1.3 1 0 0 1 1 1 0 Pilot protein MxiM DUF1894 PF08979.11 gi|332795968|ref|YP_004457468.1| - 0.067 13.6 0.5 0.18 12.2 0.5 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1894) PaREP1 PF05942.11 gi|332795969|ref|YP_004457469.1| - 5e-23 81.2 0.8 5.5e-23 81.1 0.8 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family YfdX PF10938.8 gi|332795969|ref|YP_004457469.1| - 0.043 13.8 0.2 0.062 13.2 0.2 1.2 1 0 0 1 1 1 0 YfdX protein HEPN PF05168.14 gi|332795969|ref|YP_004457469.1| - 0.044 13.9 0.3 0.051 13.7 0.3 1.3 1 1 0 1 1 1 0 HEPN domain GED PF02212.18 gi|332795969|ref|YP_004457469.1| - 0.08 13.1 0.6 0.13 12.4 0.6 1.4 1 0 0 1 1 1 0 Dynamin GTPase effector domain PaREP1 PF05942.11 gi|332795970|ref|YP_004457470.1| - 6.5e-23 80.9 0.8 7.5e-23 80.7 0.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family AA_permease_2 PF13520.6 gi|332795971|ref|YP_004457471.1| - 6.6e-08 31.8 65.4 1.1e-07 31.1 65.4 1.4 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332795971|ref|YP_004457471.1| - 0.00023 19.9 55.0 0.00057 18.6 55.0 1.7 1 1 0 1 1 1 1 Amino acid permease zf-C2H2_4 PF13894.6 gi|332795973|ref|YP_004457473.1| - 0.00093 19.8 0.3 0.0018 18.9 0.3 1.5 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|332795973|ref|YP_004457473.1| - 0.0045 17.4 0.6 0.0081 16.6 0.6 1.4 1 0 0 1 1 1 1 Zinc finger, C2H2 type Zn-C2H2_12 PF18112.1 gi|332795973|ref|YP_004457473.1| - 0.025 15.0 0.1 0.048 14.1 0.1 1.4 1 0 0 1 1 1 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2_2 PF12756.7 gi|332795973|ref|YP_004457473.1| - 0.062 13.6 0.0 0.097 13.0 0.0 1.4 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-Di19 PF05605.12 gi|332795973|ref|YP_004457473.1| - 0.066 13.5 0.0 0.11 12.8 0.0 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_9 PF16293.5 gi|332795973|ref|YP_004457473.1| - 0.074 12.9 0.1 0.16 11.8 0.1 1.5 1 0 0 1 1 1 0 C2H2 type zinc-finger (1 copy) zf-C2H2_6 PF13912.6 gi|332795973|ref|YP_004457473.1| - 0.091 12.8 0.5 0.19 11.8 0.5 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger Rad50_zn_hook PF04423.14 gi|332795973|ref|YP_004457473.1| - 0.093 12.6 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Rad50 zinc hook motif zf-C2H2_jaz PF12171.8 gi|332795973|ref|YP_004457473.1| - 0.15 12.4 0.1 0.29 11.5 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding Clr2_transil PF16761.5 gi|332795973|ref|YP_004457473.1| - 0.2 12.5 0.0 0.43 11.4 0.0 1.6 1 0 0 1 1 1 0 Transcription-silencing protein, cryptic loci regulator Clr2 Glyco_hydro_1 PF00232.18 gi|332795974|ref|YP_004457474.1| - 3.3e-48 164.3 0.7 1.2e-25 89.8 0.1 2.2 1 1 1 2 2 2 2 Glycosyl hydrolase family 1 Cellulase PF00150.18 gi|332795974|ref|YP_004457474.1| - 9.7e-06 25.2 0.0 0.00044 19.8 0.0 2.2 2 0 0 2 2 2 2 Cellulase (glycosyl hydrolase family 5) Methyltrn_RNA_2 PF04013.12 gi|332795974|ref|YP_004457474.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent RNA methyltransferase DUF3537 PF12056.8 gi|332795975|ref|YP_004457475.1| - 0.091 11.6 0.3 0.13 11.0 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) SBP_bac_1 PF01547.25 gi|332795976|ref|YP_004457476.1| - 3.5e-12 46.9 2.7 5.9e-12 46.2 2.7 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|332795977|ref|YP_004457477.1| - 3.4e-14 53.0 19.2 3.4e-14 53.0 19.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|332795978|ref|YP_004457478.1| - 4.3e-14 52.7 23.0 6.5e-14 52.1 23.0 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|332795979|ref|YP_004457479.1| - 5.9e-28 98.1 0.0 1.1e-27 97.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|332795979|ref|YP_004457479.1| - 1.6e-09 38.5 0.5 4.8e-09 36.9 0.5 1.9 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|332795979|ref|YP_004457479.1| - 7.1e-09 35.7 0.0 1.6e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|332795979|ref|YP_004457479.1| - 5.1e-07 29.8 0.4 0.011 15.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|332795979|ref|YP_004457479.1| - 0.0003 21.3 0.0 0.0011 19.5 0.0 2.0 2 0 0 2 2 1 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 gi|332795979|ref|YP_004457479.1| - 0.00093 19.6 0.0 0.0016 18.9 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|332795979|ref|YP_004457479.1| - 0.0015 18.0 0.6 0.052 13.0 0.6 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATPase_2 PF01637.18 gi|332795979|ref|YP_004457479.1| - 0.0016 18.4 0.0 0.0027 17.7 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea RsgA_GTPase PF03193.16 gi|332795979|ref|YP_004457479.1| - 0.0048 16.8 0.1 0.13 12.1 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|332795979|ref|YP_004457479.1| - 0.0055 16.4 0.0 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|332795979|ref|YP_004457479.1| - 0.0058 17.2 1.3 0.019 15.4 0.0 2.3 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|332795979|ref|YP_004457479.1| - 0.0059 16.5 0.1 0.37 10.7 0.0 2.4 2 0 0 2 2 2 1 NTPase Mur_ligase_M PF08245.12 gi|332795979|ref|YP_004457479.1| - 0.011 15.8 0.0 0.019 15.0 0.0 1.4 1 0 0 1 1 1 0 Mur ligase middle domain NACHT PF05729.12 gi|332795979|ref|YP_004457479.1| - 0.015 15.2 0.0 0.032 14.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_22 PF13401.6 gi|332795979|ref|YP_004457479.1| - 0.018 15.3 0.0 0.041 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain CbiA PF01656.23 gi|332795979|ref|YP_004457479.1| - 0.019 15.0 0.0 0.041 13.9 0.0 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_29 PF13555.6 gi|332795979|ref|YP_004457479.1| - 0.031 14.0 0.0 0.063 13.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|332795979|ref|YP_004457479.1| - 0.036 13.8 0.0 0.17 11.6 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_19 PF13245.6 gi|332795979|ref|YP_004457479.1| - 0.037 14.4 0.2 0.085 13.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|332795979|ref|YP_004457479.1| - 0.052 13.3 0.1 0.14 11.9 0.0 1.6 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|332795979|ref|YP_004457479.1| - 0.055 13.4 0.0 0.25 11.2 0.0 2.0 2 0 0 2 2 2 0 Rad17 P-loop domain AAA PF00004.29 gi|332795979|ref|YP_004457479.1| - 0.074 13.5 0.3 0.25 11.8 0.3 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|332795979|ref|YP_004457479.1| - 0.088 13.2 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|332795979|ref|YP_004457479.1| - 0.093 12.7 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) TOBE PF03459.17 gi|332795979|ref|YP_004457479.1| - 0.12 12.6 0.1 0.44 10.9 0.0 2.0 2 0 0 2 2 1 0 TOBE domain Glyco_hydro_15 PF00723.21 gi|332795980|ref|YP_004457480.1| - 1.8e-05 23.7 0.1 0.00054 18.9 0.2 2.1 2 0 0 2 2 2 2 Glycosyl hydrolases family 15 Cpn60_TCP1 PF00118.24 gi|332795981|ref|YP_004457481.1| - 2.3e-161 537.8 20.3 2.6e-161 537.6 20.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family BBIP10 PF14777.6 gi|332795981|ref|YP_004457481.1| - 0.086 12.4 0.0 0.23 11.1 0.0 1.7 1 0 0 1 1 1 0 Cilia BBSome complex subunit 10 OrfB_Zn_ribbon PF07282.11 gi|332795982|ref|YP_004457482.1| - 2.4e-19 69.0 1.7 5.6e-19 67.8 0.5 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332795982|ref|YP_004457482.1| - 0.0014 18.8 0.4 0.0036 17.5 0.4 1.7 1 0 0 1 1 1 1 Probable transposase DUF3466 PF11949.8 gi|332795982|ref|YP_004457482.1| - 0.2 10.2 0.0 0.27 9.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3466) Pirin PF02678.16 gi|332795983|ref|YP_004457483.1| - 2.2e-38 130.5 0.3 7.8e-37 125.6 0.0 2.2 2 0 0 2 2 2 1 Pirin Pirin_C PF05726.13 gi|332795983|ref|YP_004457483.1| - 7.6e-27 93.7 0.0 5.6e-26 90.9 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.11 gi|332795983|ref|YP_004457483.1| - 0.00053 19.6 1.5 0.17 11.7 0.3 2.5 2 0 0 2 2 2 2 Cupin domain Cupin_3 PF05899.12 gi|332795983|ref|YP_004457483.1| - 0.0092 15.7 0.9 2.7 7.8 0.1 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF861) Transglut_core PF01841.19 gi|332795985|ref|YP_004457485.1| - 3.5e-20 72.5 0.0 5.9e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Transglutaminase-like superfamily Bact_transglu_N PF08379.10 gi|332795985|ref|YP_004457485.1| - 6e-13 49.5 0.1 9.1e-13 48.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial transglutaminase-like N-terminal region DUF553 PF04473.12 gi|332795985|ref|YP_004457485.1| - 9.5e-06 25.2 0.0 8.1e-05 22.2 0.0 1.9 1 1 1 2 2 2 1 Transglutaminase-like domain Transglut_core3 PF13471.6 gi|332795985|ref|YP_004457485.1| - 1.5e-05 24.9 0.0 2.3e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Transglutaminase-like superfamily CP_ATPgrasp_2 PF14403.6 gi|332795986|ref|YP_004457486.1| - 3.2e-82 276.4 0.0 4.3e-82 276.0 0.0 1.1 1 0 0 1 1 1 1 Circularly permuted ATP-grasp type 2 CP_ATPgrasp_1 PF04174.13 gi|332795986|ref|YP_004457486.1| - 1.1e-62 212.0 0.0 2e-62 211.2 0.0 1.4 1 1 0 1 1 1 1 A circularly permuted ATPgrasp ATP-grasp_3 PF02655.14 gi|332795986|ref|YP_004457486.1| - 0.00013 22.0 0.8 0.011 15.8 0.1 2.4 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|332795986|ref|YP_004457486.1| - 0.0026 17.1 0.1 0.029 13.6 0.1 2.5 3 1 0 3 3 3 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|332795986|ref|YP_004457486.1| - 0.0065 16.1 0.1 0.013 15.1 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain AAA_14 PF13173.6 gi|332795987|ref|YP_004457487.1| - 1.6e-08 34.7 0.0 8.5e-08 32.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain HTH_IclR PF09339.10 gi|332795987|ref|YP_004457487.1| - 0.0028 17.4 0.0 0.0069 16.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|332795987|ref|YP_004457487.1| - 0.0037 17.1 0.0 0.019 14.8 0.0 2.2 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family ATPase_2 PF01637.18 gi|332795987|ref|YP_004457487.1| - 0.0086 16.0 0.8 0.64 9.9 0.1 3.1 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_22 PF13401.6 gi|332795987|ref|YP_004457487.1| - 0.016 15.5 0.0 2.5 8.4 0.0 2.4 1 1 0 1 1 1 0 AAA domain Fe_dep_repress PF01325.19 gi|332795987|ref|YP_004457487.1| - 0.022 14.9 0.0 0.07 13.3 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.12 gi|332795987|ref|YP_004457487.1| - 0.026 14.5 0.0 0.11 12.5 0.0 2.2 1 0 0 1 1 1 0 HTH domain RE_SacI PF09566.10 gi|332795987|ref|YP_004457487.1| - 0.2 11.4 0.0 0.56 10.0 0.0 1.6 2 0 0 2 2 2 0 SacI restriction endonuclease HTH_5 PF01022.20 gi|332795988|ref|YP_004457488.1| - 5.1e-06 26.3 0.1 8.5e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|332795988|ref|YP_004457488.1| - 7.4e-06 25.4 0.4 1.3e-05 24.6 0.4 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|332795988|ref|YP_004457488.1| - 0.0013 18.7 0.0 0.0018 18.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|332795988|ref|YP_004457488.1| - 0.0015 18.7 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain POR_N PF01855.19 gi|332795989|ref|YP_004457489.1| - 2.1e-60 204.3 0.1 3.2e-60 203.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|332795989|ref|YP_004457489.1| - 3.7e-34 118.3 0.3 1.8e-33 116.1 0.1 2.1 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|332795989|ref|YP_004457489.1| - 2.3e-05 24.6 0.0 0.00015 22.0 0.0 2.4 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|332795989|ref|YP_004457489.1| - 0.00011 21.9 0.2 0.00053 19.6 0.2 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|332795989|ref|YP_004457489.1| - 0.036 14.0 0.0 0.094 12.6 0.0 1.7 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|332795990|ref|YP_004457490.1| - 3.2e-33 114.7 0.1 5.7e-33 113.9 0.0 1.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|332795990|ref|YP_004457490.1| - 2.6e-25 88.3 0.3 5.7e-25 87.2 0.3 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal CBS PF00571.28 gi|332795991|ref|YP_004457491.1| - 4.1e-41 139.2 17.9 5.5e-11 42.8 0.5 4.0 4 0 0 4 4 4 4 CBS domain Coatomer_WDAD PF04053.14 gi|332795991|ref|YP_004457491.1| - 0.17 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 Coatomer WD associated region CBS PF00571.28 gi|332795992|ref|YP_004457492.1| - 4e-25 88.0 2.6 6.7e-12 45.7 0.2 2.1 2 0 0 2 2 2 2 CBS domain p25-alpha PF05517.12 gi|332795992|ref|YP_004457492.1| - 0.12 12.5 0.0 0.16 12.2 0.0 1.2 1 1 0 1 1 1 0 p25-alpha Citrate_synt PF00285.21 gi|332795993|ref|YP_004457493.1| - 3.1e-119 398.3 0.0 3.5e-119 398.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF5638 PF18688.1 gi|332795993|ref|YP_004457493.1| - 0.059 13.7 0.1 0.34 11.3 0.0 2.3 1 1 1 2 2 2 0 Family of unknown function (DUF5638) TraI_2_C PF07515.11 gi|332795993|ref|YP_004457493.1| - 0.087 12.8 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 Putative conjugal transfer nickase/helicase TraI C-term ABC2_membrane_2 PF12679.7 gi|332795994|ref|YP_004457494.1| - 1.6e-09 37.5 29.5 3.5e-09 36.3 29.5 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|332795994|ref|YP_004457494.1| - 2.4e-07 30.9 14.5 2.4e-07 30.9 14.5 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332795995|ref|YP_004457495.1| - 3.3e-28 98.9 0.0 7.3e-28 97.8 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|332795995|ref|YP_004457495.1| - 9e-13 48.7 0.0 9.2e-06 25.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|332795995|ref|YP_004457495.1| - 0.01 16.1 0.2 0.2 11.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332795995|ref|YP_004457495.1| - 0.022 14.5 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|332795995|ref|YP_004457495.1| - 0.64 10.5 4.7 1.7 9.1 4.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|332795995|ref|YP_004457495.1| - 1 9.0 10.6 0.45 10.2 1.5 2.5 2 1 1 3 3 3 0 AAA ATPase domain HTH_34 PF13601.6 gi|332795997|ref|YP_004457497.1| - 6.1e-16 58.4 0.4 7.1e-16 58.2 0.4 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|332795997|ref|YP_004457497.1| - 1.3e-08 34.5 0.0 2e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332795997|ref|YP_004457497.1| - 4.8e-08 32.9 0.0 6.7e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|332795997|ref|YP_004457497.1| - 2.4e-05 24.1 0.1 4.5e-05 23.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|332795997|ref|YP_004457497.1| - 6.7e-05 22.4 0.2 0.00011 21.7 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|332795997|ref|YP_004457497.1| - 0.00013 21.7 0.2 0.00016 21.4 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|332795997|ref|YP_004457497.1| - 0.00045 20.0 0.0 0.00065 19.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|332795997|ref|YP_004457497.1| - 0.0015 18.6 0.2 0.03 14.5 0.0 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|332795997|ref|YP_004457497.1| - 0.0028 18.1 0.0 0.0037 17.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|332795997|ref|YP_004457497.1| - 0.0042 17.0 0.0 0.0058 16.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_36 PF13730.6 gi|332795997|ref|YP_004457497.1| - 0.0082 16.1 0.2 0.015 15.3 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|332795997|ref|YP_004457497.1| - 0.0096 15.9 0.9 0.015 15.3 0.9 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|332795997|ref|YP_004457497.1| - 0.027 14.3 0.1 0.038 13.9 0.1 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|332795997|ref|YP_004457497.1| - 0.04 13.9 0.2 0.062 13.2 0.2 1.4 1 0 0 1 1 1 0 HTH domain Acyl-CoA_dh_1 PF00441.24 gi|332795998|ref|YP_004457498.1| - 1.4e-37 129.2 0.2 2e-37 128.7 0.2 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|332795998|ref|YP_004457498.1| - 1e-22 80.1 0.2 1.9e-22 79.3 0.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|332795998|ref|YP_004457498.1| - 1.3e-21 77.3 0.0 3.8e-21 75.9 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|332795998|ref|YP_004457498.1| - 1.9e-11 44.4 0.0 3.4e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain TrmB PF01978.19 gi|332795999|ref|YP_004457499.1| - 1e-10 41.3 0.1 1.3e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|332795999|ref|YP_004457499.1| - 3.2e-07 30.2 0.3 4.8e-07 29.6 0.3 1.2 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|332795999|ref|YP_004457499.1| - 8.6e-06 25.6 0.1 1.4e-05 24.9 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|332795999|ref|YP_004457499.1| - 2.7e-05 24.0 0.0 0.00025 20.9 0.1 2.0 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|332795999|ref|YP_004457499.1| - 6.3e-05 22.5 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|332795999|ref|YP_004457499.1| - 0.00021 21.4 0.2 0.00048 20.3 0.2 1.7 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|332795999|ref|YP_004457499.1| - 0.00033 20.5 0.0 0.00044 20.1 0.0 1.2 1 0 0 1 1 1 1 MarR family RP-C PF03428.13 gi|332795999|ref|YP_004457499.1| - 0.00038 20.2 0.0 0.00053 19.7 0.0 1.1 1 0 0 1 1 1 1 Replication protein C N-terminal domain TFIIE_alpha PF02002.17 gi|332795999|ref|YP_004457499.1| - 0.00063 19.6 0.1 0.00077 19.3 0.1 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_24 PF13412.6 gi|332795999|ref|YP_004457499.1| - 0.0014 18.2 0.1 0.0024 17.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|332795999|ref|YP_004457499.1| - 0.0057 16.6 0.0 0.0078 16.2 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|332795999|ref|YP_004457499.1| - 0.0084 16.6 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain SMC_ScpB PF04079.16 gi|332795999|ref|YP_004457499.1| - 0.011 15.4 0.0 0.014 15.0 0.0 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB DUF4423 PF14394.6 gi|332795999|ref|YP_004457499.1| - 0.029 14.1 0.1 0.049 13.3 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|332795999|ref|YP_004457499.1| - 0.039 13.8 0.0 0.067 13.0 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain Penicillinase_R PF03965.16 gi|332795999|ref|YP_004457499.1| - 0.061 13.7 0.0 0.085 13.2 0.0 1.4 1 1 0 1 1 1 0 Penicillinase repressor HTH_17 PF12728.7 gi|332795999|ref|YP_004457499.1| - 0.099 12.8 0.4 0.67 10.2 0.2 2.3 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|332795999|ref|YP_004457499.1| - 0.11 12.3 0.1 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|332795999|ref|YP_004457499.1| - 0.17 12.0 0.0 0.26 11.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|332795999|ref|YP_004457499.1| - 0.17 11.9 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Ldh_1_N PF00056.23 gi|332796000|ref|YP_004457500.1| - 2.3e-26 92.6 0.0 5.7e-26 91.3 0.0 1.6 2 0 0 2 2 2 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|332796000|ref|YP_004457500.1| - 2.6e-06 27.5 0.0 3.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain 3HCDH_N PF02737.18 gi|332796000|ref|YP_004457500.1| - 0.051 13.5 0.0 0.089 12.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MxiM PF11441.8 gi|332796000|ref|YP_004457500.1| - 0.071 13.4 0.0 0.22 11.8 0.0 1.9 1 0 0 1 1 1 0 Pilot protein MxiM F420_oxidored PF03807.17 gi|332796000|ref|YP_004457500.1| - 0.1 13.2 0.2 0.36 11.4 0.2 2.2 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF2173 PF09941.9 gi|332796001|ref|YP_004457501.1| - 0.04 14.2 0.1 0.097 13.0 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2173) DUF2173 PF09941.9 gi|332796002|ref|YP_004457502.1| - 3.5e-05 24.0 0.0 5.8e-05 23.4 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) DUF2207 PF09972.9 gi|332796002|ref|YP_004457502.1| - 0.027 13.2 2.4 0.032 13.0 2.4 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF2182 PF09948.9 gi|332796002|ref|YP_004457502.1| - 0.092 12.6 0.3 0.13 12.1 0.3 1.2 1 0 0 1 1 1 0 Predicted metal-binding integral membrane protein (DUF2182) Cytochrom_B_N_2 PF13631.6 gi|332796003|ref|YP_004457503.1| - 7.1e-54 182.3 3.5 7.1e-54 182.3 3.5 2.9 3 1 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|332796003|ref|YP_004457503.1| - 7.3e-12 45.5 3.4 7.3e-12 45.5 3.4 3.1 3 0 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|332796003|ref|YP_004457503.1| - 0.011 16.0 6.5 0.011 16.0 6.5 2.9 3 1 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD DUF2198 PF09964.9 gi|332796003|ref|YP_004457503.1| - 0.46 10.6 0.1 0.46 10.6 0.1 3.9 5 0 0 5 5 5 0 Uncharacterized protein conserved in bacteria (DUF2198) PaREP1 PF05942.11 gi|332796004|ref|YP_004457504.1| - 5.7e-25 87.5 0.2 5.7e-25 87.5 0.2 1.5 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family GFO_IDH_MocA PF01408.22 gi|332796005|ref|YP_004457505.1| - 1.3e-18 68.0 0.1 1.9e-18 67.4 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|332796005|ref|YP_004457505.1| - 4.9e-05 23.3 0.0 8.1e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|332796005|ref|YP_004457505.1| - 0.034 14.3 0.0 0.14 12.3 0.0 1.8 1 1 1 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DUF4078 PF13300.6 gi|332796005|ref|YP_004457505.1| - 0.039 14.3 0.5 0.11 12.8 0.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4078) TrkA_N PF02254.18 gi|332796005|ref|YP_004457505.1| - 0.055 13.7 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain ApbA PF02558.16 gi|332796005|ref|YP_004457505.1| - 0.068 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.17 gi|332796005|ref|YP_004457505.1| - 0.17 12.5 0.0 0.3 11.7 0.0 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Sugar_tr PF00083.24 gi|332796006|ref|YP_004457506.1| - 2.5e-65 221.1 16.7 3.3e-65 220.7 16.7 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332796006|ref|YP_004457506.1| - 2.1e-36 125.6 28.5 2.1e-36 125.6 28.5 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily SAF PF08666.12 gi|332796007|ref|YP_004457507.1| - 4e-12 46.6 0.9 1.3e-11 45.0 0.9 1.8 1 1 0 1 1 1 1 SAF domain SET PF00856.28 gi|332796007|ref|YP_004457507.1| - 0.015 15.7 0.0 0.7 10.3 0.0 2.4 2 1 0 2 2 2 0 SET domain DUF2577 PF10844.8 gi|332796007|ref|YP_004457507.1| - 0.067 13.4 0.0 0.19 12.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2577) GD_AH_C PF04295.13 gi|332796008|ref|YP_004457508.1| - 1.2e-123 412.8 0.1 1.3e-123 412.7 0.1 1.0 1 0 0 1 1 1 1 D-galactarate dehydratase / Altronate hydrolase, C terminus ApbA_C PF08546.11 gi|332796008|ref|YP_004457508.1| - 0.11 12.7 0.0 17 5.6 0.0 2.5 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal DUF3500 PF12006.8 gi|332796008|ref|YP_004457508.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3500) MR_MLE_C PF13378.6 gi|332796009|ref|YP_004457509.1| - 1.3e-44 152.4 0.0 1.9e-44 151.8 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|332796009|ref|YP_004457509.1| - 1.7e-05 25.0 0.0 3.1e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glyco_hydro_53 PF07745.13 gi|332796009|ref|YP_004457509.1| - 0.047 12.7 0.0 0.073 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 53 C_GCAxxG_C_C PF09719.10 gi|332796009|ref|YP_004457509.1| - 0.066 13.5 0.0 0.13 12.6 0.0 1.4 2 0 0 2 2 2 0 Putative redox-active protein (C_GCAxxG_C_C) FCD PF07729.12 gi|332796010|ref|YP_004457510.1| - 2.2e-23 83.0 0.0 5.6e-23 81.7 0.0 1.6 2 0 0 2 2 2 1 FCD domain GntR PF00392.21 gi|332796010|ref|YP_004457510.1| - 3.2e-15 55.5 0.0 6e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|332796010|ref|YP_004457510.1| - 0.00026 20.5 0.1 0.00084 18.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|332796010|ref|YP_004457510.1| - 0.00041 20.2 5.9 0.0078 16.1 0.0 3.0 3 0 0 3 3 3 1 TFIIE alpha subunit DUF1315 PF07023.12 gi|332796010|ref|YP_004457510.1| - 0.0025 17.9 0.0 0.023 14.8 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1315) TrmB PF01978.19 gi|332796010|ref|YP_004457510.1| - 0.0048 16.8 0.1 0.015 15.2 0.1 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|332796010|ref|YP_004457510.1| - 0.011 16.3 0.0 0.026 15.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|332796010|ref|YP_004457510.1| - 0.011 15.5 3.2 4.6 6.9 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4423) HTH_5 PF01022.20 gi|332796010|ref|YP_004457510.1| - 0.013 15.4 0.0 0.23 11.4 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Phage_rep_O PF04492.13 gi|332796010|ref|YP_004457510.1| - 0.015 15.9 0.1 0.098 13.3 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage replication protein O FadR_C PF07840.12 gi|332796010|ref|YP_004457510.1| - 0.019 14.8 0.1 0.051 13.5 0.1 1.6 1 1 0 1 1 1 0 FadR C-terminal domain EAP30 PF04157.16 gi|332796010|ref|YP_004457510.1| - 0.033 13.5 0.2 0.078 12.3 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family DHR10 PF18595.1 gi|332796010|ref|YP_004457510.1| - 0.068 13.2 1.1 0.11 12.6 0.1 1.7 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain HTH_41 PF14502.6 gi|332796010|ref|YP_004457510.1| - 0.092 12.5 0.1 0.28 10.9 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sugar_tr PF00083.24 gi|332796011|ref|YP_004457511.1| - 4.9e-22 78.4 11.3 5.9e-22 78.2 11.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter DUF2244 PF10003.9 gi|332796011|ref|YP_004457511.1| - 0.014 15.1 0.7 0.014 15.1 0.7 2.1 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) adh_short_C2 PF13561.6 gi|332796012|ref|YP_004457512.1| - 1.2e-46 159.1 0.0 1.7e-46 158.7 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|332796012|ref|YP_004457512.1| - 2.3e-42 144.7 0.0 3.4e-42 144.1 0.0 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|332796012|ref|YP_004457512.1| - 3.9e-08 33.4 0.3 2.1e-07 31.0 0.3 2.0 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|332796012|ref|YP_004457512.1| - 0.00014 21.4 0.0 0.00043 19.8 0.0 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|332796012|ref|YP_004457512.1| - 0.013 14.9 0.0 0.015 14.7 0.0 1.2 1 0 0 1 1 1 0 Fungal family of unknown function (DUF1776) 2-Hacid_dh_C PF02826.19 gi|332796012|ref|YP_004457512.1| - 0.075 12.4 0.2 0.23 10.8 0.0 1.7 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldedh PF00171.22 gi|332796013|ref|YP_004457513.1| - 1.2e-149 498.7 0.0 1.4e-149 498.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|332796013|ref|YP_004457513.1| - 0.0001 21.5 0.0 0.00015 21.0 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) DUF1487 PF07368.11 gi|332796013|ref|YP_004457513.1| - 0.0013 18.3 0.0 0.044 13.2 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1487) MR_MLE_C PF13378.6 gi|332796014|ref|YP_004457514.1| - 2.2e-60 203.9 0.0 3.1e-60 203.5 0.0 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|332796014|ref|YP_004457514.1| - 4.2e-20 72.1 0.0 7.8e-20 71.2 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SGL PF08450.12 gi|332796015|ref|YP_004457515.1| - 1.1e-77 260.9 0.0 1.4e-77 260.7 0.0 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Arylesterase PF01731.20 gi|332796015|ref|YP_004457515.1| - 0.024 14.9 0.0 0.12 12.6 0.0 2.1 2 0 0 2 2 2 0 Arylesterase DUF839 PF05787.13 gi|332796015|ref|YP_004457515.1| - 0.13 11.4 0.0 1.1 8.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF839) Reg_prop PF07494.11 gi|332796015|ref|YP_004457515.1| - 0.56 10.6 5.0 11 6.6 0.1 3.4 3 0 0 3 3 3 0 Two component regulator propeller DUF608 PF04685.13 gi|332796016|ref|YP_004457516.1| - 2.4e-45 155.3 0.0 7.1e-45 153.7 0.0 1.7 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|332796016|ref|YP_004457516.1| - 1.7e-25 90.2 0.0 2.7e-25 89.5 0.0 1.3 1 0 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Bac_rhamnosid6H PF17389.2 gi|332796016|ref|YP_004457516.1| - 0.0001 21.7 0.1 0.00035 19.9 0.0 1.8 2 0 0 2 2 2 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain DUF5127 PF17168.4 gi|332796016|ref|YP_004457516.1| - 0.078 12.7 0.2 0.36 10.6 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5127) AA_permease_2 PF13520.6 gi|332796017|ref|YP_004457517.1| - 1.1e-25 90.4 45.9 1.3e-25 90.1 45.9 1.0 1 0 0 1 1 1 1 Amino acid permease DUF871 PF05913.11 gi|332796018|ref|YP_004457518.1| - 7.8e-43 147.0 0.0 8.7e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) HTH_3 PF01381.22 gi|332796018|ref|YP_004457518.1| - 0.083 13.0 0.0 3.5 7.8 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix SIS PF01380.22 gi|332796019|ref|YP_004457519.1| - 4.1e-37 127.0 1.3 3e-25 88.6 0.3 2.8 2 1 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|332796019|ref|YP_004457519.1| - 2.7e-15 56.7 0.0 4.7e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|332796019|ref|YP_004457519.1| - 6.4e-13 48.7 0.0 1.2e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|332796019|ref|YP_004457519.1| - 0.00041 20.4 2.4 0.00093 19.2 1.1 2.3 1 1 1 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|332796019|ref|YP_004457519.1| - 0.0047 15.9 0.0 0.0096 14.8 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4618 PF15397.6 gi|332796019|ref|YP_004457519.1| - 0.079 12.4 0.3 0.17 11.3 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4618) Amidohydro_1 PF01979.20 gi|332796020|ref|YP_004457520.1| - 1.5e-21 77.1 0.1 3e-21 76.1 0.1 1.5 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|332796020|ref|YP_004457520.1| - 8.7e-16 58.4 0.1 1.8e-09 37.6 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family DUF3198 PF11433.8 gi|332796020|ref|YP_004457520.1| - 0.01 15.7 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3198) DUF608 PF04685.13 gi|332796021|ref|YP_004457521.1| - 2.3e-81 273.8 3.1 1.2e-79 268.2 3.1 2.2 1 1 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|332796021|ref|YP_004457521.1| - 5e-11 42.6 3.7 2.8e-09 36.9 3.7 3.1 1 1 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Bac_rhamnosid6H PF17389.2 gi|332796021|ref|YP_004457521.1| - 0.0025 17.1 0.2 0.0037 16.6 0.2 1.3 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain GDE_C PF06202.14 gi|332796021|ref|YP_004457521.1| - 0.0064 15.5 0.0 0.1 11.5 0.0 2.2 2 0 0 2 2 2 1 Amylo-alpha-1,6-glucosidase Glyco_hydro_31 PF01055.26 gi|332796022|ref|YP_004457522.1| - 8.4e-134 447.1 1.1 1e-133 446.8 1.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|332796022|ref|YP_004457522.1| - 2.3e-20 72.7 0.0 4.9e-20 71.6 0.0 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like Glyco_hydro_38N PF01074.22 gi|332796024|ref|YP_004457524.1| - 3.3e-67 226.9 0.6 5.6e-67 226.1 0.3 1.5 2 0 0 2 2 2 1 Glycosyl hydrolases family 38 N-terminal domain Glyco_hydro_38C PF07748.13 gi|332796024|ref|YP_004457524.1| - 2.3e-53 181.4 0.0 4.2e-53 180.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal domain Alpha-mann_mid PF09261.11 gi|332796024|ref|YP_004457524.1| - 1.6e-21 76.2 0.0 4e-21 75.0 0.0 1.7 1 0 0 1 1 1 1 Alpha mannosidase middle domain Glyco_hydro38C2 PF17677.1 gi|332796024|ref|YP_004457524.1| - 5.6e-13 48.8 0.2 1.5e-12 47.4 0.2 1.8 1 0 0 1 1 1 1 Glycosyl hydrolases family 38 C-terminal beta sandwich domain TetR_C_10 PF16295.5 gi|332796025|ref|YP_004457525.1| - 0.005 17.1 1.8 2.4 8.5 0.0 2.4 1 1 1 2 2 2 2 Tetracyclin repressor-like, C-terminal domain BPD_transp_1 PF00528.22 gi|332796026|ref|YP_004457526.1| - 1.4e-24 86.8 18.2 1.4e-24 86.8 18.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|332796026|ref|YP_004457526.1| - 3.3e-05 23.7 2.6 3.3e-05 23.7 2.6 3.7 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C Ac76 PF05814.11 gi|332796027|ref|YP_004457527.1| - 0.51 10.4 8.7 0.077 13.0 5.0 1.5 2 0 0 2 2 2 0 Orf76 (Ac76) ABC_tran PF00005.27 gi|332796029|ref|YP_004457529.1| - 3.3e-32 111.9 0.0 4.4e-32 111.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|332796029|ref|YP_004457529.1| - 7.3e-14 52.0 0.0 1.4e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|332796029|ref|YP_004457529.1| - 0.00096 19.6 0.0 0.0012 19.2 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|332796029|ref|YP_004457529.1| - 0.0018 18.0 0.1 0.0062 16.3 0.0 1.7 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_22 PF13401.6 gi|332796029|ref|YP_004457529.1| - 0.0049 17.1 0.2 0.018 15.3 0.2 1.9 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|332796029|ref|YP_004457529.1| - 0.0067 16.2 0.0 0.012 15.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_13 PF13166.6 gi|332796029|ref|YP_004457529.1| - 0.0075 15.0 0.1 0.92 8.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|332796029|ref|YP_004457529.1| - 0.016 15.0 0.0 0.034 13.9 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|332796029|ref|YP_004457529.1| - 0.036 14.2 0.0 0.083 13.0 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|332796029|ref|YP_004457529.1| - 0.042 13.8 0.0 0.073 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|332796029|ref|YP_004457529.1| - 0.062 13.2 0.2 0.14 12.1 0.2 1.6 1 1 0 1 1 1 0 NACHT domain AAA_18 PF13238.6 gi|332796029|ref|YP_004457529.1| - 0.079 13.5 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|332796029|ref|YP_004457529.1| - 0.084 12.3 0.1 0.2 11.1 0.0 1.6 2 0 0 2 2 2 0 PhoH-like protein TsaE PF02367.17 gi|332796029|ref|YP_004457529.1| - 0.13 12.3 0.0 0.24 11.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|332796029|ref|YP_004457529.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|332796029|ref|YP_004457529.1| - 0.16 11.3 0.0 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI DLIC PF05783.11 gi|332796029|ref|YP_004457529.1| - 0.17 10.7 0.0 0.22 10.3 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) Myosin_head PF00063.21 gi|332796029|ref|YP_004457529.1| - 0.2 9.8 0.0 0.29 9.3 0.0 1.1 1 0 0 1 1 1 0 Myosin head (motor domain) AAA_33 PF13671.6 gi|332796029|ref|YP_004457529.1| - 0.22 11.7 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|332796030|ref|YP_004457530.1| - 2.5e-27 96.1 0.0 3.6e-27 95.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|332796030|ref|YP_004457530.1| - 9.4e-17 61.3 0.0 1.7e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|332796030|ref|YP_004457530.1| - 3.4e-12 46.8 0.7 2.2e-07 31.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332796030|ref|YP_004457530.1| - 5.7e-08 32.5 1.5 4.4e-07 29.6 1.5 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|332796030|ref|YP_004457530.1| - 4.8e-07 30.1 0.2 5.5e-06 26.7 0.2 2.1 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|332796030|ref|YP_004457530.1| - 6.5e-05 22.7 0.2 0.089 12.5 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_29 PF13555.6 gi|332796030|ref|YP_004457530.1| - 7.6e-05 22.4 0.0 0.00015 21.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332796030|ref|YP_004457530.1| - 0.00018 22.1 0.7 0.00033 21.2 0.7 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332796030|ref|YP_004457530.1| - 0.0002 21.8 0.0 0.00028 21.3 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|332796030|ref|YP_004457530.1| - 0.00087 19.7 0.7 0.0097 16.3 0.7 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.22 gi|332796030|ref|YP_004457530.1| - 0.00092 18.5 0.5 0.0049 16.1 0.5 2.0 1 1 0 1 1 1 1 NB-ARC domain RsgA_GTPase PF03193.16 gi|332796030|ref|YP_004457530.1| - 0.0024 17.8 0.0 0.0051 16.7 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase TniB PF05621.11 gi|332796030|ref|YP_004457530.1| - 0.0035 16.8 0.2 0.18 11.2 0.1 2.3 2 0 0 2 2 2 1 Bacterial TniB protein DUF87 PF01935.17 gi|332796030|ref|YP_004457530.1| - 0.0052 16.9 0.5 0.021 14.9 0.1 2.1 2 1 1 3 3 3 1 Helicase HerA, central domain RNA_helicase PF00910.22 gi|332796030|ref|YP_004457530.1| - 0.0067 16.8 0.0 0.017 15.5 0.0 1.8 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|332796030|ref|YP_004457530.1| - 0.0081 16.1 0.0 0.015 15.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|332796030|ref|YP_004457530.1| - 0.024 14.6 0.0 0.055 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|332796030|ref|YP_004457530.1| - 0.04 12.7 0.8 1.2 7.8 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|332796030|ref|YP_004457530.1| - 0.045 13.5 2.1 0.093 12.4 1.4 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|332796030|ref|YP_004457530.1| - 0.049 14.2 0.0 0.097 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|332796030|ref|YP_004457530.1| - 0.067 12.9 0.1 0.26 11.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain PRK PF00485.18 gi|332796030|ref|YP_004457530.1| - 0.067 12.9 0.0 0.098 12.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family TsaE PF02367.17 gi|332796030|ref|YP_004457530.1| - 0.074 13.0 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|332796030|ref|YP_004457530.1| - 0.09 12.9 0.2 0.2 11.7 0.2 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase T2SSE PF00437.20 gi|332796030|ref|YP_004457530.1| - 0.099 11.7 0.1 1.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|332796030|ref|YP_004457530.1| - 0.11 12.7 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|332796030|ref|YP_004457530.1| - 0.12 12.5 0.0 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Torsin SbcCD_C PF13558.6 gi|332796030|ref|YP_004457530.1| - 0.13 12.5 0.1 0.43 10.8 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.6 gi|332796030|ref|YP_004457530.1| - 0.13 11.8 0.1 2.4 7.7 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|332796030|ref|YP_004457530.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain APS_kinase PF01583.20 gi|332796030|ref|YP_004457530.1| - 0.15 12.0 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_30 PF13604.6 gi|332796030|ref|YP_004457530.1| - 0.25 11.1 0.1 1.7 8.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|332796030|ref|YP_004457530.1| - 3.8 6.0 9.0 6.6 5.2 1.7 2.9 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|332796031|ref|YP_004457531.1| - 1.4e-34 119.5 7.1 1.4e-34 119.5 7.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|332796031|ref|YP_004457531.1| - 0.1 12.9 0.1 0.1 12.9 0.1 3.5 4 0 0 4 4 4 0 Sigma factor regulator N-terminal DUF871 PF05913.11 gi|332796032|ref|YP_004457532.1| - 4.8e-79 266.1 0.1 5.8e-79 265.9 0.1 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF871) SBP_bac_5 PF00496.22 gi|332796033|ref|YP_004457533.1| - 1.7e-36 126.0 0.0 2.6e-36 125.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle SKG6 PF08693.10 gi|332796033|ref|YP_004457533.1| - 2.3 7.7 14.0 5.4 6.5 14.0 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain DUF608 PF04685.13 gi|332796035|ref|YP_004457535.1| - 6.7e-37 127.5 0.5 4.3e-26 92.0 0.2 2.5 2 1 0 2 2 2 2 Glycosyl-hydrolase family 116, catalytic region Glyco_hydr_116N PF12215.8 gi|332796035|ref|YP_004457535.1| - 8.6e-28 97.7 0.0 1.6e-26 93.6 0.0 2.5 1 1 0 1 1 1 1 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term GDE_C PF06202.14 gi|332796035|ref|YP_004457535.1| - 0.022 13.7 0.0 0.036 13.0 0.0 1.4 1 0 0 1 1 1 0 Amylo-alpha-1,6-glucosidase Raffinose_syn PF05691.12 gi|332796036|ref|YP_004457536.1| - 2.3e-39 134.9 3.8 5.8e-20 70.7 0.2 3.1 2 1 1 3 3 3 3 Raffinose synthase or seed imbibition protein Sip1 Melibiase_2 PF16499.5 gi|332796036|ref|YP_004457536.1| - 0.0056 15.9 0.2 0.057 12.6 0.0 2.3 2 1 0 2 2 2 1 Alpha galactosidase A Acetyltransf_1 PF00583.25 gi|332796038|ref|YP_004457538.1| - 1.2e-12 48.1 0.1 1.6e-12 47.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|332796038|ref|YP_004457538.1| - 1.6e-08 35.3 0.0 2.1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|332796038|ref|YP_004457538.1| - 3.1e-08 33.6 0.0 4.1e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|332796038|ref|YP_004457538.1| - 9e-07 29.2 0.1 1.9e-06 28.2 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|332796038|ref|YP_004457538.1| - 0.00024 21.0 0.0 0.00041 20.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|332796038|ref|YP_004457538.1| - 0.016 15.4 0.0 0.023 14.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Big_6 PF17936.1 gi|332796038|ref|YP_004457538.1| - 0.027 14.7 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig domain DUF2810 PF10928.8 gi|332796038|ref|YP_004457538.1| - 0.1 12.6 0.7 4.5 7.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2810) DrsE PF02635.15 gi|332796039|ref|YP_004457539.1| - 3.6e-06 27.3 0.1 4.3e-06 27.1 0.1 1.3 1 1 0 1 1 1 1 DsrE/DsrF-like family DUF1242 PF06842.12 gi|332796039|ref|YP_004457539.1| - 0.031 14.1 0.0 0.07 12.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1242) AGT PF11440.8 gi|332796040|ref|YP_004457540.1| - 0.017 14.2 0.0 0.019 14.0 0.0 1.1 1 0 0 1 1 1 0 DNA alpha-glucosyltransferase DUF4145 PF13643.6 gi|332796040|ref|YP_004457540.1| - 0.086 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) PIN PF01850.21 gi|332796042|ref|YP_004457542.1| - 1.5e-20 73.9 0.8 1.7e-20 73.7 0.8 1.0 1 0 0 1 1 1 1 PIN domain CcdA PF07362.12 gi|332796043|ref|YP_004457543.1| - 0.00018 21.9 0.1 0.00023 21.5 0.1 1.2 1 0 0 1 1 1 1 Post-segregation antitoxin CcdA POTRA_TamA_1 PF17243.2 gi|332796043|ref|YP_004457543.1| - 0.0074 16.4 0.7 0.011 15.8 0.6 1.4 1 1 0 1 1 1 1 POTRA domain TamA domain 1 ThiP_synth PF10120.9 gi|332796043|ref|YP_004457543.1| - 0.014 15.0 0.2 0.015 14.9 0.2 1.1 1 0 0 1 1 1 0 Thiamine-phosphate synthase RelB PF04221.12 gi|332796043|ref|YP_004457543.1| - 0.03 14.3 0.0 0.042 13.8 0.0 1.4 1 0 0 1 1 1 0 RelB antitoxin MCM6_C PF18263.1 gi|332796043|ref|YP_004457543.1| - 0.12 12.6 3.8 0.16 12.2 3.8 1.2 1 0 0 1 1 1 0 MCM6 C-terminal winged-helix domain RHH_1 PF01402.21 gi|332796043|ref|YP_004457543.1| - 1.5 8.9 8.9 0.91 9.5 2.5 3.2 1 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family PIN PF01850.21 gi|332796044|ref|YP_004457544.1| - 2.3e-11 44.3 0.1 2.6e-11 44.1 0.1 1.0 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|332796045|ref|YP_004457545.1| - 0.0003 20.6 1.5 0.00084 19.2 1.5 1.8 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin STN PF07660.14 gi|332796045|ref|YP_004457545.1| - 0.0097 15.7 0.2 2 8.3 0.1 2.2 2 0 0 2 2 2 2 Secretin and TonB N terminus short domain MraZ PF02381.18 gi|332796045|ref|YP_004457545.1| - 0.012 15.6 0.1 0.015 15.3 0.1 1.2 1 0 0 1 1 1 0 MraZ protein, putative antitoxin-like Cas_NE0113 PF09623.10 gi|332796046|ref|YP_004457546.1| - 0.0062 16.2 0.0 0.0091 15.7 0.0 1.3 1 0 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) DUF4259 PF14078.6 gi|332796046|ref|YP_004457546.1| - 0.037 14.8 0.0 0.053 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4259) Cas_Cas4 PF01930.17 gi|332796047|ref|YP_004457547.1| - 1.8e-24 86.7 0.0 2.1e-24 86.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|332796047|ref|YP_004457547.1| - 3.1e-07 30.6 0.0 3.4e-07 30.4 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_DxTHG PF09455.10 gi|332796048|ref|YP_004457548.1| - 6.4e-30 104.9 8.7 7.6e-30 104.7 8.7 1.1 1 0 0 1 1 1 1 CRISPR-associated (Cas) DxTHG family DnaB PF00772.21 gi|332796048|ref|YP_004457548.1| - 0.014 15.5 0.2 0.034 14.2 0.2 1.6 1 0 0 1 1 1 0 DnaB-like helicase N terminal domain SARS_3b PF12383.8 gi|332796049|ref|YP_004457549.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 Severe acute respiratory syndrome coronavirus 3b protein DUF2007 PF09413.10 gi|332796049|ref|YP_004457549.1| - 0.22 11.7 0.5 3.9 7.7 0.0 2.3 2 0 0 2 2 2 0 Putative prokaryotic signal transducing protein Pox_VLTF3 PF04947.14 gi|332796050|ref|YP_004457550.1| - 0.00049 19.9 3.7 0.00053 19.8 3.7 1.0 1 0 0 1 1 1 1 Poxvirus Late Transcription Factor VLTF3 like Imm70 PF15601.6 gi|332796050|ref|YP_004457550.1| - 0.0077 15.8 1.5 0.0089 15.6 1.5 1.3 1 1 0 1 1 1 1 Immunity protein 70 DUF1241 PF06840.11 gi|332796050|ref|YP_004457550.1| - 0.015 14.9 1.2 0.062 12.9 0.5 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1241) CcdA PF07362.12 gi|332796050|ref|YP_004457550.1| - 0.026 14.9 2.1 0.026 14.9 2.1 1.4 1 1 1 2 2 2 0 Post-segregation antitoxin CcdA ADPrib_exo_Tox PF03496.14 gi|332796050|ref|YP_004457550.1| - 0.031 13.6 1.3 0.032 13.6 1.3 1.0 1 0 0 1 1 1 0 ADP-ribosyltransferase exoenzyme ECH_2 PF16113.5 gi|332796050|ref|YP_004457550.1| - 0.046 13.2 1.0 0.045 13.2 1.0 1.0 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase PIN PF01850.21 gi|332796051|ref|YP_004457551.1| - 0.0003 21.3 0.1 0.00046 20.7 0.1 1.4 1 1 0 1 1 1 1 PIN domain HD PF01966.22 gi|332796052|ref|YP_004457552.1| - 1.5e-08 34.9 0.3 5.8e-08 33.0 0.2 2.2 2 1 0 2 2 2 1 HD domain HD_6 PF18019.1 gi|332796052|ref|YP_004457552.1| - 0.083 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 HD domain RAMPs PF03787.15 gi|332796053|ref|YP_004457553.1| - 2.1e-09 37.7 3.5 6.7e-09 36.1 3.5 1.7 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|332796054|ref|YP_004457554.1| - 0.0042 17.1 12.1 0.0058 16.7 7.2 3.2 2 1 0 2 2 2 1 RAMP superfamily Csm2_III-A PF03750.13 gi|332796055|ref|YP_004457555.1| - 0.0012 19.6 0.0 0.045 14.6 0.0 2.1 1 1 0 1 1 1 1 Csm2 Type III-A RAMPs PF03787.15 gi|332796056|ref|YP_004457556.1| - 1.3e-19 71.1 2.6 2.4e-19 70.2 2.6 1.5 1 1 0 1 1 1 1 RAMP superfamily RAMPs PF03787.15 gi|332796057|ref|YP_004457557.1| - 3.1e-16 60.0 0.9 3.1e-16 60.0 0.9 2.1 2 1 0 2 2 2 1 RAMP superfamily Imm43 PF15570.6 gi|332796057|ref|YP_004457557.1| - 0.1 12.6 1.7 0.68 9.9 0.8 2.1 2 0 0 2 2 2 0 Immunity protein 43 RAMPs PF03787.15 gi|332796058|ref|YP_004457558.1| - 1.6e-11 44.7 0.4 3.2e-11 43.7 0.4 1.6 1 1 0 1 1 1 1 RAMP superfamily Csa1 PF06023.12 gi|332796061|ref|YP_004457561.1| - 1.7e-107 359.1 0.0 1.9e-107 358.9 0.0 1.0 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 Cas_Cas4 PF01930.17 gi|332796061|ref|YP_004457561.1| - 2.4e-11 44.0 0.2 3.1e-06 27.4 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|332796061|ref|YP_004457561.1| - 6.6e-06 26.2 0.0 8.9e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UL41A PF17591.2 gi|332796061|ref|YP_004457561.1| - 0.0019 18.2 0.0 0.004 17.2 0.0 1.5 1 0 0 1 1 1 1 Herpesvirus UL41A DUF1769 PF08588.10 gi|332796061|ref|YP_004457561.1| - 0.066 13.4 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1769) PI3K_P85_iSH2 PF16454.5 gi|332796062|ref|YP_004457562.1| - 0.004 16.8 1.3 0.034 13.7 0.7 2.4 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain DUF4795 PF16043.5 gi|332796062|ref|YP_004457562.1| - 0.04 13.5 0.1 0.083 12.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) DUF2481 PF10654.9 gi|332796062|ref|YP_004457562.1| - 1.7 8.7 5.3 3.5 7.6 0.2 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF2481) Rsa3 PF14615.6 gi|332796063|ref|YP_004457563.1| - 0.12 12.0 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Ribosome-assembly protein 3 PIN PF01850.21 gi|332796064|ref|YP_004457564.1| - 6.5e-09 36.3 1.0 2.8e-08 34.3 1.0 1.9 1 1 0 1 1 1 1 PIN domain DUF1664 PF07889.12 gi|332796065|ref|YP_004457565.1| - 2.6e-05 24.3 17.7 0.00013 22.0 9.3 3.2 1 1 2 3 3 2 1 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|332796065|ref|YP_004457565.1| - 0.0002 21.4 4.9 0.0029 17.7 2.7 2.6 2 1 0 2 2 1 1 Baculovirus polyhedron envelope protein, PEP, C terminus Apolipoprotein PF01442.18 gi|332796065|ref|YP_004457565.1| - 0.00039 20.3 6.0 0.0014 18.5 5.8 2.0 2 1 0 2 2 1 1 Apolipoprotein A1/A4/E domain NPV_P10 PF05531.12 gi|332796065|ref|YP_004457565.1| - 0.00076 19.9 19.5 0.066 13.7 11.9 4.5 3 1 1 4 4 3 1 Nucleopolyhedrovirus P10 protein DUF4455 PF14643.6 gi|332796065|ref|YP_004457565.1| - 0.0012 17.7 4.9 0.002 16.9 4.9 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4455) DUF3584 PF12128.8 gi|332796065|ref|YP_004457565.1| - 0.0016 16.1 4.9 0.002 15.8 4.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Fer4_24 PF18109.1 gi|332796065|ref|YP_004457565.1| - 0.002 18.4 2.1 21 5.5 0.1 3.6 3 0 0 3 3 3 0 Ferredoxin I 4Fe-4S cluster domain FliD_C PF07195.12 gi|332796065|ref|YP_004457565.1| - 0.0031 17.0 4.6 0.0085 15.5 2.7 2.4 1 1 1 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Matrilin_ccoil PF10393.9 gi|332796065|ref|YP_004457565.1| - 0.0034 17.2 3.7 1.8 8.5 0.2 3.7 4 0 0 4 4 3 1 Trimeric coiled-coil oligomerisation domain of matrilin ABC_tran_CTD PF16326.5 gi|332796065|ref|YP_004457565.1| - 0.0067 16.7 6.5 0.089 13.1 0.3 3.4 1 1 3 4 4 4 2 ABC transporter C-terminal domain ApoO PF09769.9 gi|332796065|ref|YP_004457565.1| - 0.0068 16.4 2.1 0.063 13.2 0.8 2.8 1 1 2 3 3 3 1 Apolipoprotein O Fib_alpha PF08702.10 gi|332796065|ref|YP_004457565.1| - 0.0084 16.3 11.1 0.013 15.7 9.5 2.1 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family DUF2730 PF10805.8 gi|332796065|ref|YP_004457565.1| - 0.0087 16.1 7.0 0.02 15.0 1.7 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF2730) T3SSipB PF16535.5 gi|332796065|ref|YP_004457565.1| - 0.0088 16.5 0.1 0.015 15.7 0.1 1.4 1 0 0 1 1 1 1 Type III cell invasion protein SipB Dynactin_p22 PF07426.11 gi|332796065|ref|YP_004457565.1| - 0.0091 15.9 7.0 0.017 15.0 7.0 1.5 1 0 0 1 1 1 1 Dynactin subunit p22 Tweety PF04906.13 gi|332796065|ref|YP_004457565.1| - 0.014 14.1 3.9 0.014 14.0 2.9 1.5 1 1 0 1 1 1 0 Tweety Exonuc_VII_L PF02601.15 gi|332796065|ref|YP_004457565.1| - 0.014 14.9 0.5 0.016 14.8 0.5 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit Tektin PF03148.14 gi|332796065|ref|YP_004457565.1| - 0.016 14.0 8.0 0.026 13.3 8.0 1.3 1 0 0 1 1 1 0 Tektin family DUF5403 PF17395.2 gi|332796065|ref|YP_004457565.1| - 0.018 15.3 4.2 0.62 10.4 3.4 2.5 1 1 1 2 2 2 0 Family of unknown function (DUF5403) TPR_MLP1_2 PF07926.12 gi|332796065|ref|YP_004457565.1| - 0.022 14.8 1.0 0.022 14.8 1.0 2.7 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.20 gi|332796065|ref|YP_004457565.1| - 0.028 14.4 3.8 0.028 14.4 3.8 3.6 2 1 2 4 4 3 0 Prefoldin subunit DUF4164 PF13747.6 gi|332796065|ref|YP_004457565.1| - 0.036 14.3 7.1 0.67 10.3 0.9 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF4407 PF14362.6 gi|332796065|ref|YP_004457565.1| - 0.042 13.2 1.5 0.054 12.8 1.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) CLZ PF16526.5 gi|332796065|ref|YP_004457565.1| - 0.043 14.2 7.6 0.66 10.4 0.5 3.4 1 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels YojJ PF10372.9 gi|332796065|ref|YP_004457565.1| - 0.049 13.7 2.0 0.049 13.7 2.0 3.1 2 1 1 3 3 2 0 Bacterial membrane-spanning protein N-terminus DUF4143 PF13635.6 gi|332796065|ref|YP_004457565.1| - 0.049 13.8 1.7 0.085 13.0 1.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4143) Ax_dynein_light PF10211.9 gi|332796065|ref|YP_004457565.1| - 0.06 13.3 10.5 1.1 9.2 3.2 2.5 1 1 1 2 2 2 0 Axonemal dynein light chain DUF5082 PF16888.5 gi|332796065|ref|YP_004457565.1| - 0.061 13.6 14.0 0.23 11.7 9.6 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) Fzo_mitofusin PF04799.13 gi|332796065|ref|YP_004457565.1| - 0.071 12.7 9.9 0.028 14.0 4.7 2.8 2 1 1 3 3 2 0 fzo-like conserved region Fez1 PF06818.15 gi|332796065|ref|YP_004457565.1| - 0.11 12.9 11.6 0.21 12.0 11.6 1.6 1 1 0 1 1 1 0 Fez1 Helo_like_N PF17111.5 gi|332796065|ref|YP_004457565.1| - 0.13 11.6 5.9 0.39 10.0 4.0 2.3 1 1 1 2 2 2 0 Fungal N-terminal domain of STAND proteins Prominin PF05478.11 gi|332796065|ref|YP_004457565.1| - 0.13 10.2 5.0 0.17 9.8 5.0 1.2 1 0 0 1 1 1 0 Prominin LXG PF04740.12 gi|332796065|ref|YP_004457565.1| - 0.14 11.9 7.3 0.49 10.1 4.8 2.4 1 1 0 2 2 2 0 LXG domain of WXG superfamily Spectrin PF00435.21 gi|332796065|ref|YP_004457565.1| - 0.2 12.2 7.5 0.052 14.0 2.4 2.7 2 1 0 3 3 2 0 Spectrin repeat YabA PF06156.13 gi|332796065|ref|YP_004457565.1| - 0.22 12.2 10.5 0.76 10.5 2.9 2.8 1 1 1 2 2 2 0 Initiation control protein YabA V_ATPase_I PF01496.19 gi|332796065|ref|YP_004457565.1| - 0.24 9.2 3.2 0.24 9.3 3.2 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF948 PF06103.11 gi|332796065|ref|YP_004457565.1| - 0.25 11.6 15.0 0.057 13.7 7.0 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) LPP PF04728.13 gi|332796065|ref|YP_004457565.1| - 0.25 11.8 12.0 7.6 7.0 0.1 5.0 3 1 2 5 5 4 0 Lipoprotein leucine-zipper COG5 PF10392.9 gi|332796065|ref|YP_004457565.1| - 0.29 11.3 2.7 1.5 9.0 0.3 2.4 1 1 1 2 2 2 0 Golgi transport complex subunit 5 DASH_Duo1 PF08651.10 gi|332796065|ref|YP_004457565.1| - 0.32 10.8 5.4 8.7 6.2 0.1 3.2 2 1 1 3 3 2 0 DASH complex subunit Duo1 Remorin_C PF03763.13 gi|332796065|ref|YP_004457565.1| - 0.34 10.8 16.2 1.4 8.9 8.0 3.2 2 1 1 3 3 3 0 Remorin, C-terminal region Suppressor_APC PF11414.8 gi|332796065|ref|YP_004457565.1| - 0.35 10.9 2.5 36 4.5 0.0 3.4 1 1 2 3 3 3 0 Adenomatous polyposis coli tumour suppressor protein DUF16 PF01519.16 gi|332796065|ref|YP_004457565.1| - 0.38 11.3 20.5 0.044 14.3 9.3 3.0 1 1 1 2 2 2 0 Protein of unknown function DUF16 HrpB7 PF09486.10 gi|332796065|ref|YP_004457565.1| - 0.39 11.1 3.6 1.5 9.2 2.1 2.6 2 1 0 2 2 1 0 Bacterial type III secretion protein (HrpB7) GAS PF13851.6 gi|332796065|ref|YP_004457565.1| - 0.45 9.8 15.4 0.038 13.3 9.5 2.1 2 1 0 2 2 1 0 Growth-arrest specific micro-tubule binding LMBR1 PF04791.16 gi|332796065|ref|YP_004457565.1| - 0.47 9.3 2.6 0.49 9.3 2.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4795 PF16043.5 gi|332796065|ref|YP_004457565.1| - 0.52 9.9 19.0 6.4 6.3 15.8 3.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4795) CCDC-167 PF15188.6 gi|332796065|ref|YP_004457565.1| - 0.52 10.7 12.9 3.1e+02 1.8 12.9 3.2 1 1 0 1 1 1 0 Coiled-coil domain-containing protein 167 DASH_Spc19 PF08287.11 gi|332796065|ref|YP_004457565.1| - 0.57 10.1 6.7 1.6 8.6 6.5 1.9 1 1 0 1 1 1 0 Spc19 Allexi_40kDa PF05549.11 gi|332796065|ref|YP_004457565.1| - 0.62 9.5 3.3 1 8.8 2.9 1.6 1 1 0 1 1 1 0 Allexivirus 40kDa protein COG2 PF06148.11 gi|332796065|ref|YP_004457565.1| - 0.74 9.9 12.4 13 5.8 10.9 2.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 ApoLp-III PF07464.11 gi|332796065|ref|YP_004457565.1| - 0.76 9.9 17.2 0.58 10.2 14.2 2.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Fmp27_WPPW PF10359.9 gi|332796065|ref|YP_004457565.1| - 0.86 8.4 9.1 0.57 9.0 2.1 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Spc7 PF08317.11 gi|332796065|ref|YP_004457565.1| - 0.98 8.2 15.6 0.62 8.9 14.0 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein MCPVI PF02993.14 gi|332796065|ref|YP_004457565.1| - 0.99 9.2 5.5 1.6 8.5 4.8 1.7 1 1 0 1 1 1 0 Minor capsid protein VI HMMR_N PF15905.5 gi|332796065|ref|YP_004457565.1| - 1.2 8.6 19.0 0.24 10.8 14.5 1.9 1 1 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal HIP1_clath_bdg PF16515.5 gi|332796065|ref|YP_004457565.1| - 1.2 9.8 8.7 3.2 8.4 3.6 2.6 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Bacillus_HBL PF05791.11 gi|332796065|ref|YP_004457565.1| - 1.2 8.9 8.6 0.9 9.3 6.2 1.9 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) ACCA PF03255.14 gi|332796065|ref|YP_004457565.1| - 1.2 9.0 8.5 3.7 7.4 3.3 2.6 1 1 1 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF4140 PF13600.6 gi|332796065|ref|YP_004457565.1| - 1.6 9.2 6.6 2.9 8.4 0.1 3.1 2 1 1 3 3 2 0 N-terminal domain of unknown function (DUF4140) Mt_ATP-synt_B PF05405.14 gi|332796065|ref|YP_004457565.1| - 1.7 8.3 12.1 4.8 6.8 0.1 2.8 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) DUF148 PF02520.17 gi|332796065|ref|YP_004457565.1| - 2 8.5 9.7 1.1 9.4 6.1 2.4 2 1 0 2 2 1 0 Domain of unknown function DUF148 UPF0242 PF06785.11 gi|332796065|ref|YP_004457565.1| - 2.7 8.1 10.7 0.58 10.2 5.7 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus GldM_N PF12081.8 gi|332796065|ref|YP_004457565.1| - 2.8 8.0 16.4 1.4 9.0 12.3 2.3 1 1 0 2 2 2 0 GldM N-terminal domain FlaC_arch PF05377.11 gi|332796065|ref|YP_004457565.1| - 2.8 8.4 29.6 0.34 11.3 7.1 5.1 4 1 2 6 6 5 0 Flagella accessory protein C (FlaC) Vac_Fusion PF02346.16 gi|332796065|ref|YP_004457565.1| - 2.9 7.6 10.6 12 5.7 0.5 4.0 2 1 4 6 6 4 0 Chordopoxvirus multifunctional envelope protein A27 DUF3552 PF12072.8 gi|332796065|ref|YP_004457565.1| - 2.9 7.2 17.6 2.6 7.4 15.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) L31 PF09784.9 gi|332796065|ref|YP_004457565.1| - 3.1 8.3 8.5 8.7 6.8 0.8 2.6 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 DUF4446 PF14584.6 gi|332796065|ref|YP_004457565.1| - 3.5 7.6 10.9 6.4 6.7 1.7 3.3 2 1 3 5 5 5 0 Protein of unknown function (DUF4446) GTP-bdg_M PF16360.5 gi|332796065|ref|YP_004457565.1| - 5.1 7.8 6.1 59 4.4 0.2 3.7 1 1 2 3 3 3 0 GTP-binding GTPase Middle Region Mt_ATP-synt_D PF05873.12 gi|332796065|ref|YP_004457565.1| - 5.6 6.8 13.6 1.5 8.7 8.6 2.5 2 1 0 2 2 1 0 ATP synthase D chain, mitochondrial (ATP5H) Alanine_zipper PF11839.8 gi|332796065|ref|YP_004457565.1| - 6.2 7.3 5.7 41 4.6 0.0 3.4 2 1 1 4 4 3 0 Alanine-zipper, major outer membrane lipoprotein Occludin_ELL PF07303.13 gi|332796065|ref|YP_004457565.1| - 9 7.1 7.9 5.1 7.9 3.5 2.7 2 1 1 3 3 1 0 Occludin homology domain APG6_N PF17675.1 gi|332796065|ref|YP_004457565.1| - 9.2 6.8 10.8 3.8 8.0 5.4 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region CRISPR_Cas2 PF09827.9 gi|332796066|ref|YP_004457566.1| - 2.3e-19 69.4 0.1 2.8e-19 69.1 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas1 PF01867.16 gi|332796067|ref|YP_004457567.1| - 1.4e-57 195.0 0.0 1.7e-57 194.8 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas1 Cas6_N PF17952.1 gi|332796068|ref|YP_004457568.1| - 8.4e-42 142.1 1.1 1.6e-41 141.2 1.1 1.5 1 0 0 1 1 1 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|332796068|ref|YP_004457568.1| - 7.7e-18 64.9 0.1 1.3e-17 64.2 0.1 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas_Cas6 PF01881.16 gi|332796068|ref|YP_004457568.1| - 6.1e-05 23.6 1.0 0.00013 22.6 1.0 1.5 1 0 0 1 1 1 1 CRISPR associated protein Cas6 DUF1765 PF08578.10 gi|332796068|ref|YP_004457568.1| - 0.013 15.9 0.1 0.024 15.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1765) RAMPs PF03787.15 gi|332796068|ref|YP_004457568.1| - 0.025 14.6 0.6 0.041 13.9 0.5 1.6 1 1 0 1 1 1 0 RAMP superfamily AAA_14 PF13173.6 gi|332796069|ref|YP_004457569.1| - 2.3e-13 50.3 0.4 1.5e-12 47.7 0.0 2.3 3 0 0 3 3 3 1 AAA domain DUF4143 PF13635.6 gi|332796069|ref|YP_004457569.1| - 2.7e-07 30.7 0.4 4.2e-07 30.1 0.4 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF3221 PF11518.8 gi|332796069|ref|YP_004457569.1| - 0.0091 16.3 0.6 0.031 14.6 0.6 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3221) HTH_24 PF13412.6 gi|332796069|ref|YP_004457569.1| - 0.017 14.7 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|332796069|ref|YP_004457569.1| - 0.029 13.9 0.0 0.071 12.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family NUMOD1 PF07453.13 gi|332796069|ref|YP_004457569.1| - 0.031 14.5 0.1 0.069 13.4 0.1 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_11 PF08279.12 gi|332796069|ref|YP_004457569.1| - 0.031 14.2 0.0 0.061 13.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_Tnp_ISL3 PF13542.6 gi|332796069|ref|YP_004457569.1| - 0.038 13.4 0.0 0.075 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|332796069|ref|YP_004457569.1| - 0.067 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.6 gi|332796069|ref|YP_004457569.1| - 0.12 12.3 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain zf-CCHC_6 PF15288.6 gi|332796070|ref|YP_004457570.1| - 0.13 12.2 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Zinc knuckle HTH_AsnC-type PF13404.6 gi|332796071|ref|YP_004457571.1| - 0.016 15.1 0.1 0.033 14.0 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ATPase_2 PF01637.18 gi|332796072|ref|YP_004457572.1| - 2.2e-16 60.5 2.9 4e-16 59.6 2.9 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|332796072|ref|YP_004457572.1| - 7.1e-12 45.5 0.5 4.4e-06 26.7 0.1 2.4 2 0 0 2 2 2 2 AAA domain TrmB PF01978.19 gi|332796072|ref|YP_004457572.1| - 2.4e-06 27.4 0.0 8.2e-06 25.6 0.0 1.9 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB AAA_16 PF13191.6 gi|332796072|ref|YP_004457572.1| - 0.00074 19.9 0.0 0.004 17.5 0.0 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|332796072|ref|YP_004457572.1| - 0.0024 18.1 0.0 0.0065 16.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332796072|ref|YP_004457572.1| - 0.0054 17.2 0.3 0.2 12.1 0.2 3.0 3 1 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) Receptor_IA-2 PF11548.8 gi|332796072|ref|YP_004457572.1| - 0.012 15.6 0.0 13 5.8 0.0 3.3 3 0 0 3 3 3 0 Protein-tyrosine phosphatase receptor IA-2 E2F_TDP PF02319.20 gi|332796072|ref|YP_004457572.1| - 0.02 14.9 0.0 0.06 13.4 0.0 1.9 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|332796072|ref|YP_004457572.1| - 0.039 13.9 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|332796072|ref|YP_004457572.1| - 0.063 13.0 0.0 0.19 11.4 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF4777 PF16007.5 gi|332796072|ref|YP_004457572.1| - 0.092 13.0 0.4 1.1 9.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) Glyco_tran_WecB PF03808.13 gi|332796072|ref|YP_004457572.1| - 0.15 12.0 0.0 5.1 7.0 0.0 2.7 3 0 0 3 3 3 0 Glycosyl transferase WecB/TagA/CpsF family Post_transc_reg PF13797.6 gi|332796073|ref|YP_004457573.1| - 0.011 15.6 0.8 0.011 15.6 0.8 1.8 3 0 0 3 3 3 0 Post-transcriptional regulator Ldh_2 PF02615.14 gi|332796074|ref|YP_004457574.1| - 7.7e-07 28.6 0.0 8.4e-07 28.5 0.0 1.1 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase ABC_membrane PF00664.23 gi|332796075|ref|YP_004457575.1| - 1.5e-42 146.1 13.8 2.1e-42 145.6 13.8 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|332796075|ref|YP_004457575.1| - 3.5e-33 115.0 0.0 7.5e-33 114.0 0.0 1.6 1 0 0 1 1 1 1 ABC transporter DUF1854 PF08909.11 gi|332796075|ref|YP_004457575.1| - 3e-20 72.4 0.2 6.3e-20 71.3 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1854) SMC_N PF02463.19 gi|332796075|ref|YP_004457575.1| - 1.6e-06 27.7 0.6 0.00066 19.2 0.0 2.6 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain DUF87 PF01935.17 gi|332796075|ref|YP_004457575.1| - 0.00062 19.9 0.1 0.0018 18.4 0.1 1.7 1 0 0 1 1 1 1 Helicase HerA, central domain DEAD PF00270.29 gi|332796075|ref|YP_004457575.1| - 0.0014 18.5 0.1 0.0043 16.8 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|332796075|ref|YP_004457575.1| - 0.0025 18.1 0.6 0.018 15.3 0.1 2.5 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|332796075|ref|YP_004457575.1| - 0.0031 17.2 0.1 0.0073 16.0 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|332796075|ref|YP_004457575.1| - 0.0046 16.8 0.2 0.37 10.5 0.1 3.0 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system G-alpha PF00503.20 gi|332796075|ref|YP_004457575.1| - 0.013 14.7 0.0 0.032 13.4 0.0 1.6 1 0 0 1 1 1 0 G-protein alpha subunit Rad17 PF03215.15 gi|332796075|ref|YP_004457575.1| - 0.031 14.2 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_16 PF13191.6 gi|332796075|ref|YP_004457575.1| - 0.035 14.5 0.0 0.071 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|332796075|ref|YP_004457575.1| - 0.04 13.8 0.0 0.13 12.1 0.0 1.9 1 0 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|332796075|ref|YP_004457575.1| - 0.042 13.9 0.4 0.48 10.5 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF815 PF05673.13 gi|332796075|ref|YP_004457575.1| - 0.057 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|332796075|ref|YP_004457575.1| - 0.071 13.7 2.7 0.074 13.6 0.0 2.4 2 0 0 2 2 1 0 AAA domain bPH_3 PF14470.6 gi|332796075|ref|YP_004457575.1| - 0.082 13.3 2.5 0.22 11.9 0.0 2.9 3 0 0 3 3 2 0 Bacterial PH domain AAA_24 PF13479.6 gi|332796075|ref|YP_004457575.1| - 0.086 12.6 1.8 0.23 11.2 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|332796075|ref|YP_004457575.1| - 0.091 12.3 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_5 PF07728.14 gi|332796075|ref|YP_004457575.1| - 0.093 12.7 0.2 0.94 9.5 0.0 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) CbiA PF01656.23 gi|332796075|ref|YP_004457575.1| - 0.11 12.6 0.1 5.4 7.1 0.0 2.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain MacB_PCD PF12704.7 gi|332796075|ref|YP_004457575.1| - 0.11 12.8 0.1 4.9 7.5 0.0 2.5 2 0 0 2 2 2 0 MacB-like periplasmic core domain Peptidase_M20 PF01546.28 gi|332796076|ref|YP_004457576.1| - 2.4e-31 109.1 0.0 3.6e-31 108.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|332796076|ref|YP_004457576.1| - 3.6e-17 62.3 0.0 6.6e-17 61.4 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Coagulase PF08764.10 gi|332796076|ref|YP_004457576.1| - 0.037 14.2 0.2 0.037 14.2 0.2 1.5 2 0 0 2 2 2 0 Staphylococcus aureus coagulase Lipoprotein_18 PF06804.11 gi|332796076|ref|YP_004457576.1| - 0.083 11.9 0.1 0.15 11.1 0.1 1.3 1 0 0 1 1 1 0 NlpB/DapX lipoprotein Sulfotransfer_1 PF00685.27 gi|332796078|ref|YP_004457578.1| - 0.086 12.3 0.1 0.089 12.3 0.1 1.0 1 0 0 1 1 1 0 Sulfotransferase domain OrfB_Zn_ribbon PF07282.11 gi|332796079|ref|YP_004457579.1| - 5.3e-23 80.7 2.2 1.1e-22 79.8 0.6 2.2 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332796079|ref|YP_004457579.1| - 0.00084 19.6 1.5 0.0019 18.4 0.4 2.1 2 1 0 2 2 2 1 Probable transposase YhfH PF14149.6 gi|332796079|ref|YP_004457579.1| - 0.1 12.6 0.1 0.76 9.8 0.0 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF3466 PF11949.8 gi|332796079|ref|YP_004457579.1| - 0.11 11.1 0.0 0.16 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3466) LPD39 PF18858.1 gi|332796079|ref|YP_004457579.1| - 0.26 11.4 2.6 0.64 10.1 0.1 2.1 2 0 0 2 2 2 0 Large polyvalent protein associated domain 39 MazE_antitoxin PF04014.18 gi|332796080|ref|YP_004457580.1| - 3.1e-11 42.9 2.4 5.1e-11 42.2 2.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin MraZ PF02381.18 gi|332796080|ref|YP_004457580.1| - 1.2e-06 28.4 0.1 0.00012 22.0 0.0 2.2 1 1 1 2 2 2 1 MraZ protein, putative antitoxin-like PrlF_antitoxin PF15937.5 gi|332796080|ref|YP_004457580.1| - 0.00014 22.3 0.1 0.00019 21.8 0.1 1.2 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin AbrB-like PF14250.6 gi|332796080|ref|YP_004457580.1| - 0.00061 19.8 0.0 0.00083 19.4 0.0 1.2 1 0 0 1 1 1 1 AbrB-like transcriptional regulator DUF104 PF01954.16 gi|332796080|ref|YP_004457580.1| - 0.003 17.9 8.6 0.0086 16.5 8.4 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF104 CTP-dep_RFKase PF01982.16 gi|332796080|ref|YP_004457580.1| - 0.063 13.4 0.5 0.11 12.5 0.1 1.6 2 0 0 2 2 2 0 Domain of unknown function DUF120 UFD1 PF03152.14 gi|332796080|ref|YP_004457580.1| - 0.09 12.3 0.0 0.15 11.5 0.0 1.5 1 1 1 2 2 2 0 Ubiquitin fusion degradation protein UFD1 WG_beta_rep PF14903.6 gi|332796080|ref|YP_004457580.1| - 0.12 12.7 3.2 2.3 8.6 0.1 3.0 2 1 0 2 2 2 0 WG containing repeat PIN PF01850.21 gi|332796081|ref|YP_004457581.1| - 1e-15 58.3 0.2 1.1e-15 58.2 0.2 1.0 1 0 0 1 1 1 1 PIN domain EspA PF03433.13 gi|332796081|ref|YP_004457581.1| - 0.024 14.5 0.0 0.03 14.2 0.0 1.1 1 0 0 1 1 1 0 EspA-like secreted protein Sigma70_r1_1 PF03979.14 gi|332796081|ref|YP_004457581.1| - 0.038 14.1 0.9 4.1 7.5 0.3 2.4 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 OrfB_Zn_ribbon PF07282.11 gi|332796082|ref|YP_004457582.1| - 0.058 13.3 0.0 0.56 10.2 0.0 2.4 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Resolvase PF00239.21 gi|332796083|ref|YP_004457583.1| - 3.5e-09 36.9 0.2 3.9e-09 36.8 0.2 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain MFS_1 PF07690.16 gi|332796084|ref|YP_004457584.1| - 2.2e-21 76.2 44.7 4.3e-12 45.6 24.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332796084|ref|YP_004457584.1| - 0.055 11.9 5.9 0.08 11.3 0.5 2.2 2 0 0 2 2 2 0 Transmembrane secretion effector MazE_antitoxin PF04014.18 gi|332796085|ref|YP_004457585.1| - 6.9e-12 45.0 1.0 1.1e-11 44.4 1.0 1.4 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin AbrB-like PF14250.6 gi|332796085|ref|YP_004457585.1| - 0.0011 19.0 0.1 0.0016 18.5 0.1 1.2 1 0 0 1 1 1 1 AbrB-like transcriptional regulator DUF104 PF01954.16 gi|332796085|ref|YP_004457585.1| - 0.011 16.2 0.3 0.021 15.3 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function DUF104 Thump_like PF18096.1 gi|332796085|ref|YP_004457585.1| - 0.022 14.7 0.1 0.038 13.9 0.1 1.4 1 0 0 1 1 1 0 THUMP domain-like CTP-dep_RFKase PF01982.16 gi|332796085|ref|YP_004457585.1| - 0.036 14.2 0.1 0.056 13.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF120 DUF1905 PF08922.11 gi|332796085|ref|YP_004457585.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Skp1 PF01466.19 gi|332796085|ref|YP_004457585.1| - 0.95 9.6 3.7 11 6.2 0.1 2.6 2 1 0 2 2 2 0 Skp1 family, dimerisation domain PIN PF01850.21 gi|332796086|ref|YP_004457586.1| - 1.8e-15 57.5 0.9 2e-15 57.4 0.9 1.0 1 0 0 1 1 1 1 PIN domain DUF4411 PF14367.6 gi|332796086|ref|YP_004457586.1| - 0.0011 18.9 0.3 0.009 15.9 0.3 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4411) DNA_pol_B PF00136.21 gi|332796088|ref|YP_004457588.1| - 2.8e-14 52.7 1.2 1.4e-12 47.1 1.2 2.9 1 1 0 1 1 1 1 DNA polymerase family B XPC-binding PF09280.11 gi|332796090|ref|YP_004457590.1| - 0.012 15.4 1.2 0.089 12.5 0.0 2.3 2 0 0 2 2 2 0 XPC-binding domain CSTF2_hinge PF14327.6 gi|332796090|ref|YP_004457590.1| - 0.063 13.7 0.3 0.063 13.7 0.3 1.5 2 0 0 2 2 2 0 Hinge domain of cleavage stimulation factor subunit 2 GRAM PF02893.20 gi|332796090|ref|YP_004457590.1| - 0.075 12.9 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 GRAM domain OrfB_Zn_ribbon PF07282.11 gi|332796091|ref|YP_004457591.1| - 1.6e-22 79.2 0.7 3.5e-22 78.1 0.1 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332796091|ref|YP_004457591.1| - 1.4e-14 54.3 2.9 1.9e-14 53.9 0.0 2.5 2 1 0 3 3 3 1 Probable transposase C1_2 PF03107.16 gi|332796091|ref|YP_004457591.1| - 0.017 15.4 0.2 0.03 14.6 0.2 1.4 1 0 0 1 1 1 0 C1 domain Resolvase PF00239.21 gi|332796092|ref|YP_004457592.1| - 1.5e-14 54.3 0.1 2e-14 53.9 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|332796092|ref|YP_004457592.1| - 2.8e-11 43.4 0.1 5.9e-11 42.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|332796092|ref|YP_004457592.1| - 6e-09 35.9 0.1 1.8e-08 34.3 0.1 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 gi|332796092|ref|YP_004457592.1| - 2.3e-06 27.3 0.0 4.8e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 MerR family regulatory protein MerR_2 PF13591.6 gi|332796092|ref|YP_004457592.1| - 8.6e-05 22.3 0.9 0.00043 20.1 0.0 2.4 3 0 0 3 3 3 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|332796092|ref|YP_004457592.1| - 0.004 16.9 0.0 0.013 15.3 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|332796092|ref|YP_004457592.1| - 0.011 15.8 0.5 0.1 12.6 0.0 2.7 3 1 0 3 3 3 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4_2 PF08281.12 gi|332796092|ref|YP_004457592.1| - 0.072 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 CLP1_P PF16575.5 gi|332796092|ref|YP_004457592.1| - 0.074 12.8 0.2 0.12 12.2 0.1 1.4 1 1 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop HTH_28 PF13518.6 gi|332796092|ref|YP_004457592.1| - 0.12 12.5 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|332796092|ref|YP_004457592.1| - 0.17 11.6 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Gp-FAR-1 PF05823.12 gi|332796092|ref|YP_004457592.1| - 0.28 11.5 3.6 0.34 11.2 0.2 2.2 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) HTH_22 PF13309.6 gi|332796092|ref|YP_004457592.1| - 1.4 9.0 5.1 43 4.3 0.1 3.6 3 1 1 4 4 4 0 HTH domain PLDc_2 PF13091.6 gi|332796094|ref|YP_004457594.1| - 2.8e-20 72.6 0.1 7.5e-11 42.0 0.0 2.3 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|332796094|ref|YP_004457594.1| - 0.017 15.3 1.9 0.34 11.2 0.4 2.8 2 0 0 2 2 2 0 Phospholipase D Active site motif PP_kinase_C_1 PF17941.1 gi|332796094|ref|YP_004457594.1| - 0.031 13.8 0.1 0.19 11.3 0.1 2.1 2 1 0 2 2 2 0 Polyphosphate kinase C-terminal domain 1 OrfB_Zn_ribbon PF07282.11 gi|332796096|ref|YP_004457596.1| - 5.2e-21 74.4 0.3 7e-21 73.9 0.3 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_4 PF14570.6 gi|332796096|ref|YP_004457596.1| - 0.012 15.4 0.6 0.017 14.9 0.6 1.3 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zinc_ribbon_2 PF13240.6 gi|332796096|ref|YP_004457596.1| - 0.045 13.5 3.3 0.47 10.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain CpXC PF14353.6 gi|332796096|ref|YP_004457596.1| - 0.14 12.2 0.0 1.8 8.6 0.0 2.1 2 0 0 2 2 2 0 CpXC protein Sgf11 PF08209.11 gi|332796096|ref|YP_004457596.1| - 0.24 11.0 0.2 0.24 11.0 0.2 2.2 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) MFS_1 PF07690.16 gi|332796097|ref|YP_004457597.1| - 1.9e-24 86.3 47.3 1.9e-24 86.3 47.3 1.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332796097|ref|YP_004457597.1| - 1.3e-11 44.0 11.3 1.3e-11 44.0 11.3 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter MazE_antitoxin PF04014.18 gi|332796098|ref|YP_004457598.1| - 2.8e-10 39.9 1.4 4.2e-10 39.3 1.4 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|332796098|ref|YP_004457598.1| - 0.086 13.3 0.0 0.096 13.1 0.0 1.2 1 0 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|332796099|ref|YP_004457599.1| - 1.2e-17 64.6 1.2 1.4e-17 64.3 1.2 1.1 1 0 0 1 1 1 1 PIN domain GATase PF00117.28 gi|332796100|ref|YP_004457600.1| - 3.3e-19 69.4 0.0 4.4e-19 69.0 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|332796100|ref|YP_004457600.1| - 5.2e-06 26.4 0.1 7.4e-05 22.6 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|332796100|ref|YP_004457600.1| - 0.00034 20.4 0.0 0.00055 19.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|332796100|ref|YP_004457600.1| - 0.085 12.4 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain VapB_antitoxin PF09957.9 gi|332796101|ref|YP_004457601.1| - 0.069 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB DUF4133 PF13571.6 gi|332796102|ref|YP_004457602.1| - 0.046 14.0 2.0 0.046 14.0 2.0 5.2 4 2 2 6 6 6 0 Domain of unknown function (DUF4133) Deltameth_res PF16020.5 gi|332796102|ref|YP_004457602.1| - 1 9.3 3.5 4.8 7.1 0.6 3.4 2 0 0 2 2 2 0 Deltamethrin resistance Peptidase_M20 PF01546.28 gi|332796103|ref|YP_004457603.1| - 4.3e-32 111.5 0.1 5.8e-32 111.1 0.1 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|332796103|ref|YP_004457603.1| - 2.6e-13 49.8 0.0 5.6e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Amidohydro_3 PF07969.11 gi|332796104|ref|YP_004457604.1| - 1.2e-16 61.2 0.0 1.5e-16 60.9 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family DUF2681 PF10883.8 gi|332796104|ref|YP_004457604.1| - 0.09 13.2 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2681) CIDR1_gamma PF18562.1 gi|332796105|ref|YP_004457605.1| - 0.0071 16.4 1.8 0.11 12.6 0.2 2.1 2 0 0 2 2 2 1 Cysteine-Rich Interdomain Region 1 gamma UvrA_DNA-bind PF17755.1 gi|332796105|ref|YP_004457605.1| - 0.039 14.3 0.0 0.061 13.7 0.0 1.3 1 1 0 1 1 1 0 UvrA DNA-binding domain TFCD_C PF12612.8 gi|332796105|ref|YP_004457605.1| - 0.08 12.8 0.0 0.087 12.7 0.0 1.0 1 0 0 1 1 1 0 Tubulin folding cofactor D C terminal FlpD PF02662.16 gi|332796105|ref|YP_004457605.1| - 0.12 12.4 0.1 0.14 12.1 0.1 1.2 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit MFS_1 PF07690.16 gi|332796106|ref|YP_004457606.1| - 6.7e-22 77.9 55.5 8.1e-18 64.5 39.7 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily SH3_3 PF08239.11 gi|332796107|ref|YP_004457607.1| - 0.032 14.5 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial SH3 domain DUF523 PF04463.12 gi|332796107|ref|YP_004457607.1| - 0.18 11.9 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF523) Transp_cyt_pur PF02133.15 gi|332796108|ref|YP_004457608.1| - 5.3e-63 213.3 46.8 8e-63 212.7 46.8 1.3 1 0 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin AAA_14 PF13173.6 gi|332796111|ref|YP_004457611.1| - 2.6e-24 85.7 0.4 5.4e-24 84.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|332796111|ref|YP_004457611.1| - 1.4e-08 34.9 0.1 3.8e-08 33.5 0.1 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) ATPase_2 PF01637.18 gi|332796111|ref|YP_004457611.1| - 5.9e-05 23.1 0.2 0.00016 21.7 0.1 1.8 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|332796111|ref|YP_004457611.1| - 0.015 15.6 0.0 0.049 14.0 0.0 1.9 2 0 0 2 2 2 0 RNA helicase Poxvirus PF06227.12 gi|332796111|ref|YP_004457611.1| - 0.035 13.9 1.5 0.14 11.9 0.1 2.4 2 0 0 2 2 2 0 dsDNA Poxvirus AAA PF00004.29 gi|332796111|ref|YP_004457611.1| - 0.062 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4843 PF16132.5 gi|332796112|ref|YP_004457612.1| - 0.016 14.8 0.2 0.096 12.3 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4843) Cytokin_check_N PF10407.9 gi|332796112|ref|YP_004457612.1| - 0.024 14.6 0.2 0.2 11.6 0.1 2.2 2 1 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus CAMSAP_CH PF11971.8 gi|332796112|ref|YP_004457612.1| - 0.091 12.6 0.0 15 5.5 0.0 2.4 2 0 0 2 2 2 0 CAMSAP CH domain 3H PF02829.14 gi|332796112|ref|YP_004457612.1| - 0.1 12.9 2.7 0.89 9.9 0.2 3.0 3 1 1 4 4 4 0 3H domain Peptidase_S9 PF00326.21 gi|332796114|ref|YP_004457614.1| - 3.8e-44 150.7 0.0 5.6e-44 150.2 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S9_N PF02897.15 gi|332796114|ref|YP_004457614.1| - 0.0026 16.6 0.6 0.0045 15.8 0.6 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Hydrolase_4 PF12146.8 gi|332796114|ref|YP_004457614.1| - 0.017 14.4 0.0 0.032 13.5 0.0 1.3 1 0 0 1 1 1 0 Serine aminopeptidase, S33 PaREP1 PF05942.11 gi|332796115|ref|YP_004457615.1| - 8.2e-35 119.2 8.3 1.2e-34 118.7 8.3 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332796115|ref|YP_004457615.1| - 0.0037 17.3 0.7 0.012 15.7 0.3 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF357) DUF241 PF03087.14 gi|332796115|ref|YP_004457615.1| - 0.0097 15.8 1.3 0.0098 15.8 0.2 1.5 2 0 0 2 2 2 1 Arabidopsis protein of unknown function DUF5618 PF18498.1 gi|332796115|ref|YP_004457615.1| - 0.016 15.4 4.5 0.03 14.5 4.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF5618) E3_UbLigase_EDD PF11547.8 gi|332796115|ref|YP_004457615.1| - 0.062 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 E3 ubiquitin ligase EDD HTH_24 PF13412.6 gi|332796116|ref|YP_004457616.1| - 2.4e-14 52.6 0.1 3.7e-14 52.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|332796116|ref|YP_004457616.1| - 1.8e-12 47.0 0.0 3.3e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|332796116|ref|YP_004457616.1| - 2.3e-12 46.5 0.0 3.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|332796116|ref|YP_004457616.1| - 4.7e-05 23.2 0.0 0.00011 22.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|332796116|ref|YP_004457616.1| - 8.6e-05 22.5 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|332796116|ref|YP_004457616.1| - 0.00021 21.1 0.0 0.00034 20.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|332796116|ref|YP_004457616.1| - 0.00042 20.8 0.0 0.0013 19.2 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|332796116|ref|YP_004457616.1| - 0.0013 18.9 0.1 0.0025 17.9 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|332796116|ref|YP_004457616.1| - 0.0031 17.3 0.6 0.0068 16.3 0.2 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|332796116|ref|YP_004457616.1| - 0.0045 16.9 0.0 0.0096 15.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain DUF2250 PF10007.9 gi|332796116|ref|YP_004457616.1| - 0.0068 16.5 1.3 0.014 15.5 0.2 2.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|332796116|ref|YP_004457616.1| - 0.008 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family DUF3400 PF11880.8 gi|332796116|ref|YP_004457616.1| - 0.026 14.1 0.0 0.13 11.8 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3400) HTH_23 PF13384.6 gi|332796116|ref|YP_004457616.1| - 0.033 14.0 0.0 0.059 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain DUF1730 PF08331.10 gi|332796116|ref|YP_004457616.1| - 0.047 13.6 0.2 0.11 12.4 0.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1730) Rrf2 PF02082.20 gi|332796116|ref|YP_004457616.1| - 0.048 14.0 0.1 0.14 12.5 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator RuvB_C PF05491.13 gi|332796116|ref|YP_004457616.1| - 0.076 12.9 0.1 0.18 11.7 0.1 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain UPF0122 PF04297.14 gi|332796116|ref|YP_004457616.1| - 0.076 13.2 0.2 0.33 11.2 0.0 1.9 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_WhiA PF02650.14 gi|332796116|ref|YP_004457616.1| - 0.079 13.3 0.2 0.17 12.3 0.1 1.7 2 0 0 2 2 1 0 WhiA C-terminal HTH domain HTH_7 PF02796.15 gi|332796116|ref|YP_004457616.1| - 0.088 12.9 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Mga PF05043.13 gi|332796116|ref|YP_004457616.1| - 0.09 13.4 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_IclR PF09339.10 gi|332796116|ref|YP_004457616.1| - 0.094 12.5 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 1 0 IclR helix-turn-helix domain DMAP1_like PF17024.5 gi|332796116|ref|YP_004457616.1| - 0.15 12.2 2.0 0.36 11.0 0.0 2.1 2 0 0 2 2 2 0 Putative DMAP1-like Sigma70_r4 PF04545.16 gi|332796116|ref|YP_004457616.1| - 0.16 11.5 0.0 0.46 10.0 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_30 PF13556.6 gi|332796116|ref|YP_004457616.1| - 0.19 11.6 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain Aminotran_3 PF00202.21 gi|332796117|ref|YP_004457617.1| - 1.8e-93 313.4 0.0 2.1e-93 313.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III kleA_kleC PF17383.2 gi|332796118|ref|YP_004457618.1| - 0.00086 19.6 0.8 1.5 9.2 0.0 2.9 1 1 2 3 3 3 1 Uncharacterized KorC regulated protein A FANCI_S4 PF14678.6 gi|332796118|ref|YP_004457618.1| - 0.0025 17.0 0.2 0.0032 16.6 0.2 1.4 1 1 0 1 1 1 1 FANCI solenoid 4 Seryl_tRNA_N PF02403.22 gi|332796118|ref|YP_004457618.1| - 0.0044 17.2 7.6 0.011 16.0 7.4 1.9 1 1 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain DUF773 PF05600.12 gi|332796118|ref|YP_004457618.1| - 0.011 14.5 4.4 0.013 14.2 4.4 1.1 1 0 0 1 1 1 0 CDK5 regulatory subunit-associated protein 3 Cohesin_load PF10345.9 gi|332796118|ref|YP_004457618.1| - 0.012 14.1 0.4 0.013 13.9 0.4 1.1 1 0 0 1 1 1 0 Cohesin loading factor TPR_MLP1_2 PF07926.12 gi|332796118|ref|YP_004457618.1| - 0.014 15.5 2.9 0.02 15.0 2.9 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|332796118|ref|YP_004457618.1| - 0.014 14.7 1.1 0.017 14.4 1.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Evr1_Alr PF04777.13 gi|332796118|ref|YP_004457618.1| - 0.015 15.8 0.1 0.031 14.7 0.1 1.5 1 1 0 1 1 1 0 Erv1 / Alr family ISG65-75 PF11727.8 gi|332796118|ref|YP_004457618.1| - 0.016 14.5 4.0 0.019 14.2 4.0 1.0 1 0 0 1 1 1 0 Invariant surface glycoprotein Laminin_I PF06008.14 gi|332796118|ref|YP_004457618.1| - 0.017 14.8 4.0 0.038 13.7 4.0 1.6 1 1 0 1 1 1 0 Laminin Domain I Muted PF14942.6 gi|332796118|ref|YP_004457618.1| - 0.03 14.7 5.6 0.04 14.3 5.6 1.1 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein DUF573 PF04504.14 gi|332796118|ref|YP_004457618.1| - 0.036 14.7 6.0 0.05 14.3 5.9 1.4 1 1 0 1 1 1 0 Protein of unknown function, DUF573 CK2S PF15011.6 gi|332796118|ref|YP_004457618.1| - 0.045 13.7 0.5 0.11 12.4 0.1 1.7 1 1 1 2 2 2 0 Casein Kinase 2 substrate PIN_8 PF18476.1 gi|332796118|ref|YP_004457618.1| - 0.053 13.4 4.5 0.074 12.9 4.5 1.3 1 1 0 1 1 1 0 PIN like domain GCN5L1 PF06320.13 gi|332796118|ref|YP_004457618.1| - 0.057 13.6 4.5 0.074 13.2 2.4 1.9 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) Phage_30_8 PF06019.11 gi|332796118|ref|YP_004457618.1| - 0.057 13.3 2.9 0.31 11.0 0.3 2.1 1 1 0 2 2 2 0 Phage GP30.8 protein Laminin_II PF06009.12 gi|332796118|ref|YP_004457618.1| - 0.088 12.8 5.3 0.52 10.3 5.3 2.0 1 1 0 1 1 1 0 Laminin Domain II PA28_beta PF02252.18 gi|332796118|ref|YP_004457618.1| - 0.095 12.4 4.7 0.22 11.2 0.5 2.0 1 1 1 2 2 2 0 Proteasome activator pa28 beta subunit Baculo_PEP_C PF04513.12 gi|332796118|ref|YP_004457618.1| - 0.1 12.7 0.5 0.16 12.0 0.5 1.4 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5617 PF18493.1 gi|332796118|ref|YP_004457618.1| - 0.12 12.5 3.0 1.6 8.9 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF5617) DUF883 PF05957.13 gi|332796118|ref|YP_004457618.1| - 0.13 12.9 3.4 2.9 8.6 0.5 2.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF2309 PF10070.9 gi|332796118|ref|YP_004457618.1| - 0.13 10.5 0.4 0.14 10.4 0.4 1.0 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2309) CorA PF01544.18 gi|332796118|ref|YP_004457618.1| - 0.14 11.4 0.9 0.16 11.2 0.9 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Syntaxin-18_N PF10496.9 gi|332796118|ref|YP_004457618.1| - 0.22 11.8 4.7 12 6.2 0.1 2.6 1 1 1 2 2 2 0 SNARE-complex protein Syntaxin-18 N-terminus Med9 PF07544.13 gi|332796118|ref|YP_004457618.1| - 0.23 11.6 5.2 0.44 10.7 4.3 2.1 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF948 PF06103.11 gi|332796118|ref|YP_004457618.1| - 0.32 11.3 2.1 2.4 8.5 2.2 2.3 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF643 PF04867.12 gi|332796118|ref|YP_004457618.1| - 0.34 11.5 9.1 0.39 11.3 9.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF643) FlaC_arch PF05377.11 gi|332796118|ref|YP_004457618.1| - 0.37 11.2 3.6 2.5 8.6 0.9 2.5 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) RecG_N PF17190.4 gi|332796118|ref|YP_004457618.1| - 0.45 11.3 6.3 0.56 11.0 2.7 2.0 1 1 1 2 2 2 0 RecG N-terminal helical domain DUF1690 PF07956.11 gi|332796118|ref|YP_004457618.1| - 0.56 10.6 7.4 2.1 8.7 7.0 1.8 1 1 0 1 1 1 0 Protein of Unknown function (DUF1690) ABC_tran_CTD PF16326.5 gi|332796118|ref|YP_004457618.1| - 0.77 10.1 6.4 0.32 11.3 0.7 2.5 1 1 1 2 2 2 0 ABC transporter C-terminal domain YtxH PF12732.7 gi|332796118|ref|YP_004457618.1| - 1.5 9.4 10.2 1.3e+02 3.2 10.2 2.2 1 1 0 1 1 1 0 YtxH-like protein Peptidase_M19 PF01244.21 gi|332796119|ref|YP_004457619.1| - 2.2e-64 217.6 0.0 2.9e-64 217.2 0.0 1.1 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) Sugar_tr PF00083.24 gi|332796120|ref|YP_004457620.1| - 8.9e-83 278.6 35.9 1.2e-82 278.2 35.9 1.1 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332796120|ref|YP_004457620.1| - 4.1e-19 68.7 44.1 4.1e-19 68.7 44.1 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily NADH-u_ox-rdase PF10785.9 gi|332796120|ref|YP_004457620.1| - 6.4 7.5 7.4 25 5.6 0.0 4.1 4 2 0 4 4 4 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit PAP2 PF01569.21 gi|332796121|ref|YP_004457621.1| - 4.4e-21 75.1 3.1 4.4e-21 75.1 3.1 1.5 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|332796121|ref|YP_004457621.1| - 1.5e-05 24.8 11.9 1.5e-05 24.8 11.9 2.4 2 1 0 2 2 2 1 PAP2 superfamily SWIM PF04434.17 gi|332796124|ref|YP_004457624.1| - 0.00077 19.1 0.2 0.0012 18.4 0.2 1.3 1 0 0 1 1 1 1 SWIM zinc finger AA_permease_2 PF13520.6 gi|332796125|ref|YP_004457625.1| - 5.2e-33 114.5 41.8 5.2e-33 114.5 41.8 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|332796125|ref|YP_004457625.1| - 2.3e-18 66.1 43.2 2.3e-18 66.1 43.2 2.2 1 1 1 2 2 2 1 Amino acid permease LysE PF01810.18 gi|332796126|ref|YP_004457626.1| - 9e-05 22.0 0.2 0.00026 20.5 0.2 1.9 1 0 0 1 1 1 1 LysE type translocator NicO PF03824.16 gi|332796126|ref|YP_004457626.1| - 0.0018 17.6 4.8 0.014 14.7 0.8 2.5 2 1 0 2 2 2 2 High-affinity nickel-transport protein DUF72 PF01904.18 gi|332796127|ref|YP_004457627.1| - 2.5e-35 122.6 1.2 3.2e-35 122.2 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 NurA PF09376.10 gi|332796129|ref|YP_004457629.1| - 4.4e-14 52.8 1.0 6.9e-14 52.1 1.0 1.3 1 0 0 1 1 1 1 NurA domain DUF87 PF01935.17 gi|332796130|ref|YP_004457630.1| - 1.7e-13 51.2 2.1 5e-13 49.7 0.1 2.6 2 1 1 3 3 3 1 Helicase HerA, central domain AAA PF00004.29 gi|332796130|ref|YP_004457630.1| - 6.3e-08 33.1 0.9 9.6e-05 22.8 0.1 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) TrwB_AAD_bind PF10412.9 gi|332796130|ref|YP_004457630.1| - 2.8e-07 29.8 0.0 4.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_22 PF13401.6 gi|332796130|ref|YP_004457630.1| - 1.4e-06 28.6 0.4 0.0006 20.1 0.0 2.8 3 0 0 3 3 3 1 AAA domain DUF853 PF05872.12 gi|332796130|ref|YP_004457630.1| - 4.1e-05 22.4 0.1 0.064 11.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|332796130|ref|YP_004457630.1| - 6.3e-05 22.4 0.1 0.00016 21.1 0.1 1.6 1 0 0 1 1 1 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|332796130|ref|YP_004457630.1| - 0.00049 19.1 0.2 0.65 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain ResIII PF04851.15 gi|332796130|ref|YP_004457630.1| - 0.00092 19.3 0.3 0.28 11.2 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|332796130|ref|YP_004457630.1| - 0.0011 19.5 0.0 0.0036 17.8 0.0 1.9 1 0 0 1 1 1 1 ABC transporter DEAD PF00270.29 gi|332796130|ref|YP_004457630.1| - 0.0037 17.0 0.0 0.59 9.9 0.0 2.4 2 0 0 2 2 2 1 DEAD/DEAH box helicase NACHT PF05729.12 gi|332796130|ref|YP_004457630.1| - 0.0068 16.3 0.1 0.1 12.5 0.0 2.2 2 0 0 2 2 2 1 NACHT domain cobW PF02492.19 gi|332796130|ref|YP_004457630.1| - 0.0088 15.7 0.1 0.018 14.6 0.1 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|332796130|ref|YP_004457630.1| - 0.01 15.6 0.1 0.03 14.1 0.1 1.8 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSE PF00437.20 gi|332796130|ref|YP_004457630.1| - 0.011 14.8 0.1 0.023 13.8 0.1 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|332796130|ref|YP_004457630.1| - 0.017 15.0 1.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|332796130|ref|YP_004457630.1| - 0.02 14.2 0.1 3.3 6.9 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|332796130|ref|YP_004457630.1| - 0.026 14.9 0.0 0.079 13.3 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain AAA_14 PF13173.6 gi|332796130|ref|YP_004457630.1| - 0.034 14.2 1.7 2.5 8.1 0.0 3.1 3 0 0 3 3 3 0 AAA domain AAA_7 PF12775.7 gi|332796130|ref|YP_004457630.1| - 0.051 13.1 0.1 0.11 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_23 PF13476.6 gi|332796130|ref|YP_004457630.1| - 0.076 13.5 0.0 0.076 13.5 0.0 2.9 3 1 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|332796130|ref|YP_004457630.1| - 0.078 12.1 0.0 0.19 10.9 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.18 gi|332796130|ref|YP_004457630.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zot PF05707.12 gi|332796130|ref|YP_004457630.1| - 0.11 12.1 0.1 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) S100PBPR PF15427.6 gi|332796130|ref|YP_004457630.1| - 0.18 11.0 0.0 0.28 10.4 0.0 1.2 1 0 0 1 1 1 0 S100P-binding protein AAA_25 PF13481.6 gi|332796130|ref|YP_004457630.1| - 0.29 10.7 1.0 45 3.5 0.3 3.1 3 0 0 3 3 3 0 AAA domain PHD_like PF12910.7 gi|332796130|ref|YP_004457630.1| - 0.48 10.5 2.2 0.49 10.4 0.7 1.8 2 0 0 2 2 1 0 Antitoxin of toxin-antitoxin, RelE / RelB, TA system PaREP1 PF05942.11 gi|332796131|ref|YP_004457631.1| - 1.5e-26 92.6 0.7 1.9e-26 92.2 0.7 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family PaREP1 PF05942.11 gi|332796132|ref|YP_004457632.1| - 8.1e-22 77.3 1.1 9.6e-22 77.1 1.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SpoVIF PF14069.6 gi|332796132|ref|YP_004457632.1| - 0.0019 17.9 0.2 0.33 10.7 0.0 2.2 1 1 1 2 2 2 2 Stage VI sporulation protein F DUF1837 PF08878.11 gi|332796132|ref|YP_004457632.1| - 0.021 14.6 1.9 0.035 13.9 1.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1837) DUF874 PF05917.11 gi|332796132|ref|YP_004457632.1| - 0.05 12.6 0.1 0.051 12.6 0.1 1.1 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) P5CR_dimer PF14748.6 gi|332796133|ref|YP_004457633.1| - 3.8e-32 110.6 0.1 7.5e-32 109.7 0.1 1.5 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|332796133|ref|YP_004457633.1| - 2.3e-18 66.6 0.3 5.4e-18 65.4 0.3 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent DapB_N PF01113.20 gi|332796133|ref|YP_004457633.1| - 4.3e-06 26.9 0.4 3.4e-05 24.0 0.1 2.1 1 1 1 2 2 2 1 Dihydrodipicolinate reductase, N-terminus ApbA PF02558.16 gi|332796133|ref|YP_004457633.1| - 8.7e-06 25.4 0.1 1.9e-05 24.3 0.1 1.6 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|332796133|ref|YP_004457633.1| - 0.00012 22.1 1.3 0.0027 17.7 1.3 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|332796133|ref|YP_004457633.1| - 0.00036 19.9 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|332796133|ref|YP_004457633.1| - 0.0012 19.0 0.1 0.0021 18.3 0.1 1.5 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|332796133|ref|YP_004457633.1| - 0.0064 17.3 0.0 0.011 16.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Sacchrp_dh_NADP PF03435.18 gi|332796133|ref|YP_004457633.1| - 0.021 15.1 0.0 0.034 14.4 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|332796133|ref|YP_004457633.1| - 0.034 14.2 0.2 0.074 13.1 0.2 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Gp_dh_N PF00044.24 gi|332796133|ref|YP_004457633.1| - 0.048 14.0 0.2 0.32 11.3 0.1 2.1 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PDH PF02153.17 gi|332796133|ref|YP_004457633.1| - 0.069 12.2 0.0 0.18 10.8 0.0 1.7 2 0 0 2 2 2 0 Prephenate dehydrogenase Rossmann-like PF10727.9 gi|332796133|ref|YP_004457633.1| - 0.088 12.7 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|332796133|ref|YP_004457633.1| - 0.12 12.0 0.7 0.93 9.0 0.1 2.4 2 1 1 3 3 3 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CoA_binding_2 PF13380.6 gi|332796133|ref|YP_004457633.1| - 0.14 12.6 0.0 0.23 11.9 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain MFS_3 PF05977.13 gi|332796135|ref|YP_004457635.1| - 0.029 12.8 10.4 0.014 13.8 2.8 2.6 2 1 0 2 2 2 0 Transmembrane secretion effector Cyclase PF04199.13 gi|332796136|ref|YP_004457636.1| - 7.2e-23 81.3 0.0 2.7e-22 79.5 0.0 1.8 1 1 0 1 1 1 1 Putative cyclase CHAD PF05235.14 gi|332796137|ref|YP_004457637.1| - 5.9e-07 29.7 0.0 0.029 14.4 0.0 2.2 1 1 1 2 2 2 2 CHAD domain DUF2730 PF10805.8 gi|332796137|ref|YP_004457637.1| - 0.013 15.6 0.2 0.022 14.8 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) DUF3243 PF11588.8 gi|332796137|ref|YP_004457637.1| - 0.046 14.0 0.0 0.17 12.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) AHD PF17793.1 gi|332796137|ref|YP_004457637.1| - 0.082 12.7 0.9 0.2 11.5 0.1 2.1 2 0 0 2 2 2 0 ANC1 homology domain (AHD) Cep57_CLD_2 PF14197.6 gi|332796137|ref|YP_004457637.1| - 0.15 12.2 1.2 0.36 10.9 0.7 1.8 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 Thymidylate_kin PF02223.17 gi|332796138|ref|YP_004457638.1| - 7.1e-17 61.7 0.1 9.6e-17 61.3 0.1 1.3 1 1 0 1 1 1 1 Thymidylate kinase UPF0180 PF03698.13 gi|332796138|ref|YP_004457638.1| - 0.022 14.9 0.1 0.11 12.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Thymidylate_kin PF02223.17 gi|332796139|ref|YP_004457639.1| - 2.5e-27 95.8 0.2 1.4e-26 93.4 0.2 1.8 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|332796139|ref|YP_004457639.1| - 4e-06 26.8 0.3 8.7e-06 25.7 0.3 1.7 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|332796139|ref|YP_004457639.1| - 0.0023 18.5 0.0 0.0056 17.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|332796139|ref|YP_004457639.1| - 0.023 15.1 0.2 0.61 10.5 0.1 2.9 2 1 0 2 2 2 0 AAA domain Hfx_Cass5 PF18287.1 gi|332796139|ref|YP_004457639.1| - 0.08 13.2 0.3 0.32 11.2 0.1 2.0 2 0 0 2 2 2 0 Integron Cassette Protein Hfx_Cass5 Ppx-GppA PF02541.16 gi|332796140|ref|YP_004457640.1| - 4.5e-43 147.7 0.4 1.1e-42 146.5 0.4 1.5 1 1 0 1 1 1 1 Ppx/GppA phosphatase family DDR PF08841.10 gi|332796140|ref|YP_004457640.1| - 0.099 11.6 0.1 0.15 11.0 0.1 1.3 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain His_Phos_1 PF00300.22 gi|332796141|ref|YP_004457641.1| - 1.3e-13 51.0 0.0 1.6e-11 44.3 0.0 2.0 2 0 0 2 2 2 2 Histidine phosphatase superfamily (branch 1) Cupin_2 PF07883.11 gi|332796142|ref|YP_004457642.1| - 6.3e-13 48.2 0.0 8.3e-13 47.9 0.0 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|332796142|ref|YP_004457642.1| - 3e-07 30.4 0.0 4.1e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Ectoine_synth PF06339.12 gi|332796142|ref|YP_004457642.1| - 1.9e-06 28.1 0.1 2.2e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Ectoine synthase Cupin_3 PF05899.12 gi|332796142|ref|YP_004457642.1| - 8.5e-05 22.2 0.1 0.00019 21.1 0.1 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.18 gi|332796142|ref|YP_004457642.1| - 0.00012 22.0 0.1 0.00015 21.7 0.1 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DUF4437 PF14499.6 gi|332796142|ref|YP_004457642.1| - 0.00043 19.5 0.0 0.00052 19.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4437) Cupin_1 PF00190.22 gi|332796142|ref|YP_004457642.1| - 0.00078 19.1 0.0 0.00098 18.7 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.7 gi|332796142|ref|YP_004457642.1| - 0.0015 18.4 0.0 0.0019 18.1 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain DMSP_lyase PF16867.5 gi|332796142|ref|YP_004457642.1| - 0.016 14.9 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_6 PF12852.7 gi|332796142|ref|YP_004457642.1| - 0.075 12.7 0.0 0.083 12.6 0.0 1.1 1 0 0 1 1 1 0 Cupin Asp_Arg_Hydrox PF05118.15 gi|332796142|ref|YP_004457642.1| - 0.16 11.8 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Aspartyl/Asparaginyl beta-hydroxylase Sugar_tr PF00083.24 gi|332796143|ref|YP_004457643.1| - 2.3e-54 185.0 18.3 3e-54 184.6 18.3 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332796143|ref|YP_004457643.1| - 3.5e-24 85.4 57.9 1e-20 74.0 32.7 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily Peptidase_M20 PF01546.28 gi|332796145|ref|YP_004457645.1| - 4.9e-21 75.4 0.0 6.6e-21 75.0 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|332796145|ref|YP_004457645.1| - 3.9e-14 52.5 0.0 7.7e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|332796145|ref|YP_004457645.1| - 0.022 14.5 0.0 0.038 13.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M28 Mrpl_C PF18502.1 gi|332796145|ref|YP_004457645.1| - 0.031 14.6 0.1 0.055 13.8 0.1 1.3 1 0 0 1 1 1 0 54S ribosomal protein L8 C-terminal domain DUF5402 PF17393.2 gi|332796145|ref|YP_004457645.1| - 0.079 12.9 0.1 0.84 9.6 0.0 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5402) Gln-synt_C PF00120.24 gi|332796146|ref|YP_004457646.1| - 4.2e-107 358.1 0.0 7.8e-107 357.2 0.0 1.4 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|332796146|ref|YP_004457646.1| - 9.7e-09 35.0 0.0 1.9e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain TFIIA_gamma_N PF02268.16 gi|332796146|ref|YP_004457646.1| - 0.14 12.2 0.8 0.61 10.1 0.0 2.5 3 0 0 3 3 3 0 Transcription initiation factor IIA, gamma subunit, helical domain Amidohydro_2 PF04909.14 gi|332796147|ref|YP_004457647.1| - 1.2e-29 104.1 0.0 1.5e-29 103.7 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase TatD_DNase PF01026.21 gi|332796147|ref|YP_004457647.1| - 0.0046 16.4 0.0 0.0072 15.7 0.0 1.3 1 0 0 1 1 1 1 TatD related DNase HAD_2 PF13419.6 gi|332796148|ref|YP_004457648.1| - 1.1e-11 45.1 0.1 1.6e-11 44.6 0.1 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|332796148|ref|YP_004457648.1| - 6.1e-07 29.9 0.0 7.5e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|332796148|ref|YP_004457648.1| - 0.0076 16.7 0.0 0.011 16.1 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Spermine_synth PF01564.17 gi|332796148|ref|YP_004457648.1| - 0.017 14.6 0.3 0.024 14.1 0.3 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain NIF PF03031.18 gi|332796148|ref|YP_004457648.1| - 0.025 14.4 0.0 0.12 12.2 0.1 2.0 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase DUF5099 PF17025.5 gi|332796148|ref|YP_004457648.1| - 0.029 14.8 0.9 0.46 10.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5099) PNK3P PF08645.11 gi|332796148|ref|YP_004457648.1| - 0.06 13.0 0.1 0.089 12.5 0.1 1.2 1 0 0 1 1 1 0 Polynucleotide kinase 3 phosphatase AIM24 PF01987.17 gi|332796149|ref|YP_004457649.1| - 1.7e-51 174.9 0.1 1.9e-51 174.7 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Sugar_tr PF00083.24 gi|332796150|ref|YP_004457650.1| - 1.8e-53 182.0 24.2 2.2e-53 181.7 24.2 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332796150|ref|YP_004457650.1| - 7.8e-28 97.4 30.8 7.8e-28 97.4 30.8 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily EVE PF01878.18 gi|332796151|ref|YP_004457651.1| - 3.7e-21 75.7 0.2 4.3e-21 75.5 0.2 1.0 1 0 0 1 1 1 1 EVE domain DUF2197 PF09963.9 gi|332796151|ref|YP_004457651.1| - 0.02 15.2 0.0 0.048 13.9 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2197) DUF1286 PF06939.11 gi|332796152|ref|YP_004457652.1| - 7.7e-45 151.7 6.9 7.7e-45 151.7 6.9 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|332796152|ref|YP_004457652.1| - 0.014 14.7 4.1 0.027 13.8 4.1 1.6 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase PaREP1 PF05942.11 gi|332796155|ref|YP_004457655.1| - 2.3e-22 79.1 0.0 3.1e-22 78.7 0.0 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Mrpl_C PF18502.1 gi|332796155|ref|YP_004457655.1| - 0.5 10.7 2.5 1 9.7 0.5 2.1 2 0 0 2 2 2 0 54S ribosomal protein L8 C-terminal domain MJ1316 PF04457.12 gi|332796157|ref|YP_004457657.1| - 4.8e-13 49.6 0.7 5.1e-13 49.6 0.7 1.0 1 0 0 1 1 1 1 MJ1316 RNA cyclic group end recognition domain HEPN PF05168.14 gi|332796160|ref|YP_004457660.1| - 1.7e-25 89.4 0.2 2e-25 89.2 0.2 1.0 1 0 0 1 1 1 1 HEPN domain FRP PF18032.1 gi|332796160|ref|YP_004457660.1| - 0.02 15.5 0.0 0.028 15.0 0.0 1.3 1 0 0 1 1 1 0 Photoprotection regulator fluorescence recovery protein NTP_transf_2 PF01909.23 gi|332796161|ref|YP_004457661.1| - 4.8e-12 46.0 2.3 5.8e-12 45.7 2.3 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332796161|ref|YP_004457661.1| - 8.2e-12 45.0 0.9 1e-11 44.8 0.9 1.1 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|332796161|ref|YP_004457661.1| - 0.0009 19.1 0.0 0.0015 18.4 0.0 1.4 1 1 0 1 1 1 1 Putative nucleotidyltransferase DUF294 DUF5611 PF18446.1 gi|332796161|ref|YP_004457661.1| - 0.031 15.1 0.7 1.4 9.8 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF5611) DUF1327 PF07041.11 gi|332796161|ref|YP_004457661.1| - 0.032 14.2 0.5 0.039 14.0 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1327) UbiA PF01040.18 gi|332796162|ref|YP_004457662.1| - 2.7e-37 128.4 22.7 3.3e-37 128.2 22.7 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family Chrome_Resist PF09828.9 gi|332796162|ref|YP_004457662.1| - 0.04 14.4 0.0 0.064 13.7 0.0 1.3 1 0 0 1 1 1 0 Chromate resistance exported protein DUF2207 PF09972.9 gi|332796162|ref|YP_004457662.1| - 4.2 6.0 5.6 2.3 6.9 3.4 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) HMGL-like PF00682.19 gi|332796163|ref|YP_004457663.1| - 2.9e-56 191.0 0.1 4e-56 190.5 0.1 1.2 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|332796163|ref|YP_004457663.1| - 9.3e-22 77.4 0.0 1.8e-21 76.4 0.0 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain URO-D PF01208.17 gi|332796163|ref|YP_004457663.1| - 0.048 12.8 0.0 0.19 10.9 0.0 1.9 2 0 0 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) PEP_mutase PF13714.6 gi|332796163|ref|YP_004457663.1| - 0.1 12.1 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate phosphomutase Csd3_N PF18059.1 gi|332796163|ref|YP_004457663.1| - 0.27 11.8 1.9 52 4.5 0.0 3.8 3 1 1 4 4 4 0 Csd3 N-terminal Alpha-amylase_C PF02806.18 gi|332796164|ref|YP_004457664.1| - 0.068 13.7 0.1 0.36 11.3 0.0 2.1 1 1 1 2 2 2 0 Alpha amylase, C-terminal all-beta domain Peripla_BP_2 PF01497.18 gi|332796165|ref|YP_004457665.1| - 7.9e-20 71.4 0.0 1.1e-19 71.0 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TnpV PF14198.6 gi|332796165|ref|YP_004457665.1| - 0.058 13.4 0.0 0.15 12.1 0.0 1.5 1 1 0 1 1 1 0 Transposon-encoded protein TnpV PsaD PF02531.16 gi|332796165|ref|YP_004457665.1| - 0.092 12.3 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 PsaD Ndr PF03096.14 gi|332796165|ref|YP_004457665.1| - 0.18 10.5 0.0 0.25 10.0 0.0 1.2 1 0 0 1 1 1 0 Ndr family CbiG_N PF11760.8 gi|332796166|ref|YP_004457666.1| - 0.0086 16.1 0.0 0.029 14.4 0.0 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|332796166|ref|YP_004457666.1| - 0.034 14.7 0.0 0.071 13.7 0.0 1.6 1 0 0 1 1 1 0 Cobalamin synthesis G C-terminus Arc_PepC_II PF06847.11 gi|332796167|ref|YP_004457667.1| - 1.2e-22 80.2 1.1 1.4e-22 80.0 0.0 1.7 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|332796167|ref|YP_004457667.1| - 5e-08 33.3 8.9 5e-08 33.3 8.9 1.7 2 0 0 2 2 2 1 Type IV leader peptidase family RIC3 PF15361.6 gi|332796167|ref|YP_004457667.1| - 0.25 11.7 2.4 0.71 10.3 0.8 2.1 2 0 0 2 2 2 0 Resistance to inhibitors of cholinesterase homologue 3 Acyl-CoA_dh_1 PF00441.24 gi|332796168|ref|YP_004457668.1| - 6.9e-42 143.2 6.5 1e-41 142.6 6.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|332796168|ref|YP_004457668.1| - 2.4e-23 82.1 0.0 9e-23 80.3 0.0 2.0 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|332796168|ref|YP_004457668.1| - 1.7e-20 73.6 3.8 3.8e-20 72.5 3.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|332796168|ref|YP_004457668.1| - 3.9e-17 62.9 0.0 2.7e-15 57.0 0.0 2.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain CitMHS PF03600.16 gi|332796169|ref|YP_004457669.1| - 2e-37 129.0 21.7 2e-37 129.0 21.7 2.0 1 1 1 2 2 2 2 Citrate transporter CitMHS_2 PF16980.5 gi|332796169|ref|YP_004457669.1| - 0.00019 20.3 1.4 0.00019 20.3 1.4 3.0 1 1 1 3 3 3 1 Putative citrate transport 4HBT PF03061.22 gi|332796170|ref|YP_004457670.1| - 2.8e-20 72.4 0.1 8.8e-10 38.8 0.0 2.2 2 0 0 2 2 2 2 Thioesterase superfamily 4HBT_2 PF13279.6 gi|332796170|ref|YP_004457670.1| - 0.00012 22.5 0.0 0.12 12.9 0.0 2.2 1 1 0 2 2 2 2 Thioesterase-like superfamily Acyl-ACP_TE PF01643.17 gi|332796170|ref|YP_004457670.1| - 0.0026 17.1 3.9 0.031 13.5 0.6 2.1 2 0 0 2 2 2 2 Acyl-ACP thioesterase TAF1D PF15333.6 gi|332796171|ref|YP_004457671.1| - 0.017 14.9 0.1 0.12 12.1 0.0 1.9 1 1 0 2 2 2 0 TATA box-binding protein-associated factor 1D SF3A3 PF16837.5 gi|332796171|ref|YP_004457671.1| - 0.069 13.7 0.3 0.12 12.9 0.3 1.4 1 0 0 1 1 1 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 DUF87 PF01935.17 gi|332796172|ref|YP_004457672.1| - 3.5e-14 53.4 4.0 2.2e-13 50.9 4.0 2.2 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|332796172|ref|YP_004457672.1| - 9.2e-09 34.4 0.0 5e-05 22.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|332796172|ref|YP_004457672.1| - 8.1e-08 31.6 0.0 4e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|332796172|ref|YP_004457672.1| - 2.8e-05 23.2 0.2 0.17 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|332796172|ref|YP_004457672.1| - 3.4e-05 24.3 0.6 0.057 13.8 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|332796172|ref|YP_004457672.1| - 0.00015 22.0 0.0 0.87 9.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain ResIII PF04851.15 gi|332796172|ref|YP_004457672.1| - 0.00021 21.4 0.0 0.56 10.2 0.0 2.3 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|332796172|ref|YP_004457672.1| - 0.0031 16.9 0.0 0.0062 15.9 0.0 1.4 1 0 0 1 1 1 1 FtsK/SpoIIIE family Zot PF05707.12 gi|332796172|ref|YP_004457672.1| - 0.035 13.8 0.0 0.07 12.8 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_7 PF12775.7 gi|332796172|ref|YP_004457672.1| - 0.077 12.5 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region NUC130_3NT PF08158.12 gi|332796172|ref|YP_004457672.1| - 0.079 13.3 0.1 0.19 12.1 0.1 1.6 1 0 0 1 1 1 0 NUC130/3NT domain ABC_tran PF00005.27 gi|332796172|ref|YP_004457672.1| - 0.12 12.9 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_24 PF13479.6 gi|332796172|ref|YP_004457672.1| - 0.14 11.9 0.2 0.25 11.1 0.2 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|332796172|ref|YP_004457672.1| - 4.9 7.6 7.5 26 5.3 7.5 2.0 1 1 0 1 1 1 0 AAA domain NurA PF09376.10 gi|332796173|ref|YP_004457673.1| - 2.5e-13 50.3 1.0 3.6e-13 49.8 1.0 1.2 1 0 0 1 1 1 1 NurA domain Pyr_redox_2 PF07992.14 gi|332796174|ref|YP_004457674.1| - 1.5e-49 168.9 1.1 1.9e-49 168.5 1.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332796174|ref|YP_004457674.1| - 1.3e-18 67.3 11.1 2.1e-15 57.0 1.8 3.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332796174|ref|YP_004457674.1| - 8.9e-17 61.3 1.1 1.8e-16 60.4 0.2 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|332796174|ref|YP_004457674.1| - 3.1e-13 49.6 0.9 6.8e-12 45.3 0.5 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332796174|ref|YP_004457674.1| - 3.1e-06 26.2 7.4 0.018 13.7 0.0 3.7 3 1 1 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|332796174|ref|YP_004457674.1| - 7.7e-06 26.0 0.2 0.033 14.4 0.0 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|332796174|ref|YP_004457674.1| - 3.1e-05 23.4 0.1 0.13 11.6 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain GIDA PF01134.22 gi|332796174|ref|YP_004457674.1| - 3.9e-05 22.9 2.4 0.074 12.1 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|332796174|ref|YP_004457674.1| - 0.00093 18.4 5.3 0.55 9.2 0.0 3.2 3 0 0 3 3 3 2 FAD binding domain Cyanate_lyase PF02560.14 gi|332796174|ref|YP_004457674.1| - 0.0024 17.7 0.2 0.0078 16.0 0.2 1.8 1 0 0 1 1 1 1 Cyanate lyase C-terminal domain NAD_binding_7 PF13241.6 gi|332796174|ref|YP_004457674.1| - 0.003 18.0 0.3 3.2 8.2 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|332796174|ref|YP_004457674.1| - 0.0038 17.8 1.3 0.077 13.6 0.3 3.0 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|332796174|ref|YP_004457674.1| - 0.0041 17.4 0.8 0.12 12.7 0.5 2.5 2 0 0 2 2 2 1 TrkA-N domain K_oxygenase PF13434.6 gi|332796174|ref|YP_004457674.1| - 0.0056 15.9 0.1 0.014 14.6 0.0 1.6 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.12 gi|332796174|ref|YP_004457674.1| - 0.014 14.5 0.3 3 6.8 0.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein DAO PF01266.24 gi|332796174|ref|YP_004457674.1| - 0.016 14.8 3.6 3.4 7.1 2.3 2.9 3 0 0 3 3 3 0 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|332796174|ref|YP_004457674.1| - 0.029 14.3 0.2 0.067 13.1 0.2 1.7 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|332796174|ref|YP_004457674.1| - 0.03 13.2 1.9 0.39 9.5 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.23 gi|332796174|ref|YP_004457674.1| - 0.033 14.2 0.1 0.4 10.6 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amino_oxidase PF01593.24 gi|332796174|ref|YP_004457674.1| - 0.044 13.1 1.5 0.12 11.6 0.5 1.9 1 1 1 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_2 PF03446.15 gi|332796174|ref|YP_004457674.1| - 0.049 13.8 0.1 0.098 12.8 0.1 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_9 PF13454.6 gi|332796174|ref|YP_004457674.1| - 0.063 13.3 3.2 12 5.8 0.0 3.6 4 0 0 4 4 4 0 FAD-NAD(P)-binding FAD_oxidored PF12831.7 gi|332796174|ref|YP_004457674.1| - 0.072 12.4 0.3 3.8 6.7 0.0 2.3 2 0 0 2 2 2 0 FAD dependent oxidoreductase ApbA PF02558.16 gi|332796174|ref|YP_004457674.1| - 0.18 11.4 0.9 0.63 9.7 0.1 2.2 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|332796174|ref|YP_004457674.1| - 1.1 8.4 4.6 1.7 7.8 0.9 2.3 2 0 0 2 2 2 0 FAD binding domain RPN6_N PF18055.1 gi|332796175|ref|YP_004457675.1| - 0.023 15.0 0.6 0.041 14.2 0.6 1.5 1 1 0 1 1 1 0 26S proteasome regulatory subunit RPN6 N-terminal domain bact-PGI_C PF10432.9 gi|332796176|ref|YP_004457676.1| - 6.2e-23 81.5 0.0 5.9e-22 78.4 0.0 2.4 2 1 0 2 2 2 1 Bacterial phospho-glucose isomerase C-terminal SIS domain SIS PF01380.22 gi|332796176|ref|YP_004457676.1| - 3.5e-06 26.9 0.5 2.4e-05 24.2 0.3 2.3 2 1 0 2 2 2 1 SIS domain SIS_2 PF13580.6 gi|332796176|ref|YP_004457676.1| - 0.042 13.9 0.2 0.096 12.7 0.1 1.6 1 1 0 1 1 1 0 SIS domain tRNA-synt_1e PF01406.19 gi|332796177|ref|YP_004457677.1| - 8.6e-128 425.9 0.7 1.4e-127 425.2 0.7 1.3 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|332796177|ref|YP_004457677.1| - 3.5e-19 68.8 1.3 7.1e-09 34.9 0.3 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|332796177|ref|YP_004457677.1| - 2.1e-11 42.8 1.1 6.8e-09 34.5 0.0 2.5 3 0 0 3 3 3 2 tRNA synthetases class I (I, L, M and V) DALR_2 PF09190.11 gi|332796177|ref|YP_004457677.1| - 2.9e-06 27.7 3.2 7.3e-06 26.4 1.7 2.3 2 0 0 2 2 2 1 DALR domain tRNA-synt_1f PF01921.18 gi|332796177|ref|YP_004457677.1| - 1e-05 24.7 0.5 0.00016 20.7 0.1 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.19 gi|332796177|ref|YP_004457677.1| - 2.6e-05 23.4 1.4 0.0035 16.3 0.1 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1c PF00749.21 gi|332796177|ref|YP_004457677.1| - 0.015 14.2 1.0 0.072 12.0 0.3 2.4 2 1 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1b PF00579.25 gi|332796177|ref|YP_004457677.1| - 0.1 11.9 0.1 0.17 11.2 0.1 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) Fib_alpha PF08702.10 gi|332796177|ref|YP_004457677.1| - 0.13 12.4 2.9 0.58 10.3 1.2 2.4 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family NUDIX PF00293.28 gi|332796178|ref|YP_004457678.1| - 9.2e-20 71.0 0.0 1.1e-19 70.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DUF4916 PF16262.5 gi|332796178|ref|YP_004457678.1| - 0.0034 16.9 0.0 0.25 10.8 0.0 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF4916) NUDIX_2 PF13869.6 gi|332796178|ref|YP_004457678.1| - 0.085 12.4 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Nucleotide hydrolase ELFV_dehydrog PF00208.21 gi|332796180|ref|YP_004457680.1| - 7.4e-70 235.4 2.1 9.4e-70 235.1 2.1 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|332796180|ref|YP_004457680.1| - 5.9e-53 178.2 0.0 1.4e-52 177.0 0.0 1.7 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|332796180|ref|YP_004457680.1| - 0.00017 21.0 0.1 0.0003 20.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|332796180|ref|YP_004457680.1| - 0.036 13.4 0.3 0.06 12.7 0.3 1.3 1 0 0 1 1 1 0 ThiF family TACC_C PF05010.14 gi|332796180|ref|YP_004457680.1| - 0.067 13.0 0.2 0.11 12.3 0.2 1.2 1 0 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal AdoHcyase_NAD PF00670.21 gi|332796180|ref|YP_004457680.1| - 0.11 12.6 0.2 0.24 11.5 0.2 1.7 1 1 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Bac_GDH PF05088.12 gi|332796180|ref|YP_004457680.1| - 0.13 9.7 0.1 0.17 9.3 0.1 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase DUF131 PF01998.17 gi|332796181|ref|YP_004457681.1| - 2.3e-17 62.4 5.8 2.3e-17 62.4 5.8 1.9 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF3687 PF12459.8 gi|332796181|ref|YP_004457681.1| - 0.019 14.5 0.3 0.019 14.5 0.3 1.8 2 0 0 2 2 2 0 D-Ala-teichoic acid biosynthesis protein Baculo_11_kDa PF06143.11 gi|332796181|ref|YP_004457681.1| - 0.022 14.3 0.2 0.48 10.0 0.3 2.1 2 0 0 2 2 2 0 Baculovirus 11 kDa family DUF2905 PF11146.8 gi|332796181|ref|YP_004457681.1| - 0.025 14.8 3.8 1.5 9.1 1.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2905) DUF2298 PF10060.9 gi|332796181|ref|YP_004457681.1| - 0.035 12.8 0.0 0.041 12.6 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) MFS_2 PF13347.6 gi|332796181|ref|YP_004457681.1| - 0.053 12.1 1.8 0.21 10.1 0.9 1.9 1 1 1 2 2 2 0 MFS/sugar transport protein FixQ PF05545.11 gi|332796181|ref|YP_004457681.1| - 0.07 13.1 0.9 7.2 6.7 0.5 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ DUF2207 PF09972.9 gi|332796181|ref|YP_004457681.1| - 0.094 11.5 1.4 0.13 11.0 1.4 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) ODV-E18 PF10717.9 gi|332796181|ref|YP_004457681.1| - 0.14 12.0 0.3 0.54 10.2 0.2 1.8 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 SdpI PF13630.6 gi|332796181|ref|YP_004457681.1| - 0.94 9.6 9.1 0.66 10.1 1.8 2.1 2 0 0 2 2 2 0 SdpI/YhfL protein family AAA_15 PF13175.6 gi|332796182|ref|YP_004457682.1| - 8.5e-28 98.1 5.8 4.6e-15 56.2 0.0 2.4 1 1 1 2 2 2 2 AAA ATPase domain AAA_21 PF13304.6 gi|332796182|ref|YP_004457682.1| - 6.7e-19 68.8 4.4 7.9e-17 62.0 4.4 2.5 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332796182|ref|YP_004457682.1| - 1e-05 25.1 0.0 3.3e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|332796182|ref|YP_004457682.1| - 0.05 14.1 7.6 0.055 14.0 5.8 1.9 2 1 0 2 2 2 0 AAA domain adh_short_C2 PF13561.6 gi|332796183|ref|YP_004457683.1| - 6.1e-49 166.7 0.0 8.8e-49 166.2 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|332796183|ref|YP_004457683.1| - 3.5e-33 114.7 0.0 4.5e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|332796183|ref|YP_004457683.1| - 0.00017 21.6 0.0 0.00028 20.9 0.0 1.3 1 0 0 1 1 1 1 KR domain UDG PF03167.19 gi|332796184|ref|YP_004457684.1| - 1.8e-48 164.5 0.0 2.3e-48 164.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily MFS_1 PF07690.16 gi|332796185|ref|YP_004457685.1| - 1.2e-44 152.6 47.6 1.3e-43 149.3 44.7 2.7 2 1 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332796185|ref|YP_004457685.1| - 4.2e-09 35.8 11.4 4.2e-09 35.8 11.4 4.4 1 1 3 5 5 5 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|332796185|ref|YP_004457685.1| - 1.4e-05 24.6 2.8 1.4e-05 24.6 2.8 4.2 2 1 1 3 3 3 1 Uncharacterised MFS-type transporter YbfB DUF347 PF03988.12 gi|332796185|ref|YP_004457685.1| - 0.54 10.5 0.1 0.54 10.5 0.1 4.0 4 1 0 4 4 4 0 Repeat of Unknown Function (DUF347) FPRL1_inhibitor PF16104.5 gi|332796187|ref|YP_004457687.1| - 0.0076 16.4 0.1 0.009 16.1 0.1 1.2 1 0 0 1 1 1 1 Formyl peptide receptor-like 1 inhibitory protein Ago_N_1 PF18351.1 gi|332796187|ref|YP_004457687.1| - 0.051 14.0 1.0 0.062 13.7 1.0 1.2 1 0 0 1 1 1 0 Fungal Argonaute N-terminal domain DUF4145 PF13643.6 gi|332796187|ref|YP_004457687.1| - 0.052 13.7 0.7 0.23 11.6 0.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4145) HAD_2 PF13419.6 gi|332796187|ref|YP_004457687.1| - 0.074 13.1 1.1 0.088 12.9 1.1 1.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase 7TMR-HDED PF07697.11 gi|332796187|ref|YP_004457687.1| - 0.098 12.8 0.4 0.11 12.5 0.4 1.1 1 0 0 1 1 1 0 7TM-HD extracellular TauE PF01925.19 gi|332796188|ref|YP_004457688.1| - 1.7e-53 181.7 38.7 2.3e-53 181.3 38.7 1.2 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE BatA PF07584.11 gi|332796188|ref|YP_004457688.1| - 0.066 13.6 0.1 0.066 13.6 0.1 2.2 3 0 0 3 3 3 0 Aerotolerance regulator N-terminal DUF2615 PF11027.8 gi|332796188|ref|YP_004457688.1| - 0.14 12.3 0.1 0.82 9.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2615) Rick_17kDa_Anti PF05433.15 gi|332796188|ref|YP_004457688.1| - 1.7 8.6 14.1 0.15 11.9 1.8 3.1 3 0 0 3 3 3 0 Glycine zipper 2TM domain Trp_oprn_chp PF09534.10 gi|332796188|ref|YP_004457688.1| - 4.5 7.0 5.2 7.8 6.3 0.5 2.8 1 1 1 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Fe_dep_repr_C PF02742.15 gi|332796189|ref|YP_004457689.1| - 7.7e-21 74.0 0.0 1.4e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|332796189|ref|YP_004457689.1| - 7.5e-06 26.0 0.0 1.5e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.6 gi|332796189|ref|YP_004457689.1| - 3.7e-05 23.6 0.0 6.2e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|332796189|ref|YP_004457689.1| - 0.00071 19.4 0.1 0.0028 17.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|332796189|ref|YP_004457689.1| - 0.0041 16.9 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|332796189|ref|YP_004457689.1| - 0.0085 16.0 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family LexA_DNA_bind PF01726.16 gi|332796189|ref|YP_004457689.1| - 0.015 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain RuvB_C PF05491.13 gi|332796189|ref|YP_004457689.1| - 0.016 15.0 0.0 0.091 12.7 0.0 2.1 2 1 0 2 2 2 0 RuvB C-terminal winged helix domain MarR_2 PF12802.7 gi|332796189|ref|YP_004457689.1| - 0.031 14.2 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|332796189|ref|YP_004457689.1| - 0.079 13.5 0.0 0.15 12.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain Pneumo_ncap PF03246.13 gi|332796189|ref|YP_004457689.1| - 0.14 10.9 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 Pneumovirus nucleocapsid protein Phytase-like PF13449.6 gi|332796189|ref|YP_004457689.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.4 1 1 0 1 1 1 0 Esterase-like activity of phytase HTH_Crp_2 PF13545.6 gi|332796189|ref|YP_004457689.1| - 0.15 12.0 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|332796189|ref|YP_004457689.1| - 0.17 12.3 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator Na_H_Exchanger PF00999.21 gi|332796190|ref|YP_004457690.1| - 2.6e-36 125.2 49.7 3.3e-36 124.9 49.7 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family CBS PF00571.28 gi|332796190|ref|YP_004457690.1| - 4.3e-13 49.5 0.9 8.1e-07 29.4 0.3 2.9 2 0 0 2 2 2 2 CBS domain Methyltrans_RNA PF04452.14 gi|332796190|ref|YP_004457690.1| - 0.04 13.3 0.4 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 RNA methyltransferase DHDPS PF00701.22 gi|332796191|ref|YP_004457691.1| - 2.1e-63 213.7 0.1 2.5e-63 213.5 0.1 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_20 PF12840.7 gi|332796193|ref|YP_004457693.1| - 3.4e-08 33.4 0.0 5.2e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|332796193|ref|YP_004457693.1| - 8.1e-07 28.8 0.1 1.5e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|332796193|ref|YP_004457693.1| - 8.3e-07 28.5 0.1 2.9e-06 26.7 0.0 2.0 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|332796193|ref|YP_004457693.1| - 8.5e-07 28.7 0.0 2.3e-06 27.3 0.0 1.6 2 0 0 2 2 2 1 LexA DNA binding domain TrmB PF01978.19 gi|332796193|ref|YP_004457693.1| - 0.0011 18.8 0.2 0.0019 18.0 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|332796193|ref|YP_004457693.1| - 0.0025 17.7 0.0 0.0045 16.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|332796193|ref|YP_004457693.1| - 0.0031 17.4 0.1 0.0066 16.4 0.0 1.5 2 0 0 2 2 2 1 HTH domain MarR PF01047.22 gi|332796193|ref|YP_004457693.1| - 0.0045 16.9 0.1 0.018 15.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|332796193|ref|YP_004457693.1| - 0.0058 16.4 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|332796193|ref|YP_004457693.1| - 0.0061 16.5 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain Fe_dep_repress PF01325.19 gi|332796193|ref|YP_004457693.1| - 0.0064 16.7 0.1 0.014 15.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain DUF1495 PF07381.11 gi|332796193|ref|YP_004457693.1| - 0.027 14.3 0.0 0.065 13.1 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) BLACT_WH PF17778.1 gi|332796193|ref|YP_004457693.1| - 0.031 14.2 0.0 0.063 13.3 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase associated winged helix domain B-block_TFIIIC PF04182.12 gi|332796193|ref|YP_004457693.1| - 0.033 14.3 0.2 0.071 13.3 0.0 1.7 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF4491 PF14898.6 gi|332796193|ref|YP_004457693.1| - 0.045 14.2 0.8 0.067 13.6 0.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4491) Phage_holin_5_2 PF16079.5 gi|332796193|ref|YP_004457693.1| - 0.074 13.4 1.7 0.11 12.9 1.7 1.3 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V HTH_27 PF13463.6 gi|332796193|ref|YP_004457693.1| - 0.093 13.2 0.0 0.17 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain KfrA_N PF11740.8 gi|332796193|ref|YP_004457693.1| - 0.21 12.3 0.0 0.25 12.0 0.0 1.2 1 0 0 1 1 1 0 Plasmid replication region DNA-binding N-term Phage_holin_5_2 PF16079.5 gi|332796194|ref|YP_004457694.1| - 0.078 13.3 4.1 0.89 9.9 1.8 2.2 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF2569 PF10754.9 gi|332796194|ref|YP_004457694.1| - 0.2 12.1 9.3 0.31 11.5 9.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2569) YesK PF14150.6 gi|332796194|ref|YP_004457694.1| - 0.21 11.8 12.3 0.38 11.0 1.1 2.1 1 1 1 2 2 2 0 YesK-like protein SPC25 PF06703.11 gi|332796194|ref|YP_004457694.1| - 2.9 7.6 7.1 7.8 6.3 7.1 1.7 1 1 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) PGG PF13962.6 gi|332796194|ref|YP_004457694.1| - 9.2 6.1 10.5 0.86 9.4 5.1 1.8 1 1 1 2 2 2 0 Domain of unknown function B12-binding PF02310.19 gi|332796195|ref|YP_004457695.1| - 3.9e-22 78.5 0.3 4.7e-22 78.3 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain Nitro_FeMo-Co PF02579.17 gi|332796195|ref|YP_004457695.1| - 0.019 15.3 0.7 6.2 7.2 0.0 2.7 2 1 1 3 3 3 0 Dinitrogenase iron-molybdenum cofactor TPP_enzyme_N PF02776.18 gi|332796195|ref|YP_004457695.1| - 0.086 12.4 0.0 6.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ADH_zinc_N PF00107.26 gi|332796195|ref|YP_004457695.1| - 0.093 12.7 0.1 1.6 8.7 0.0 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase MeaB PF03308.16 gi|332796196|ref|YP_004457696.1| - 6e-84 281.2 2.4 7.4e-84 280.9 2.4 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|332796196|ref|YP_004457696.1| - 6.9e-08 32.3 0.8 2.6e-07 30.4 0.8 2.0 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain DUF87 PF01935.17 gi|332796196|ref|YP_004457696.1| - 8.9e-05 22.7 4.2 0.0003 21.0 0.5 2.2 2 0 0 2 2 2 1 Helicase HerA, central domain NTPase_1 PF03266.15 gi|332796196|ref|YP_004457696.1| - 0.00069 19.6 1.0 0.0012 18.8 0.1 1.8 2 0 0 2 2 2 1 NTPase ABC_tran PF00005.27 gi|332796196|ref|YP_004457696.1| - 0.00095 19.7 1.1 0.00099 19.6 0.2 1.6 2 0 0 2 2 1 1 ABC transporter KAP_NTPase PF07693.14 gi|332796196|ref|YP_004457696.1| - 0.0017 17.7 0.1 0.0045 16.3 0.1 1.8 1 1 0 1 1 1 1 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|332796196|ref|YP_004457696.1| - 0.0018 18.4 0.3 0.0018 18.4 0.3 2.4 2 1 0 2 2 2 1 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|332796196|ref|YP_004457696.1| - 0.0024 18.4 0.4 0.0056 17.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain DUF463 PF04317.12 gi|332796196|ref|YP_004457696.1| - 0.0039 16.2 0.0 0.0088 15.0 0.0 1.5 1 0 0 1 1 1 1 YcjX-like family, DUF463 MobB PF03205.14 gi|332796196|ref|YP_004457696.1| - 0.0051 16.7 0.1 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ATP_bind_1 PF03029.17 gi|332796196|ref|YP_004457696.1| - 0.0055 16.5 0.2 0.014 15.2 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein RsgA_GTPase PF03193.16 gi|332796196|ref|YP_004457696.1| - 0.0072 16.3 0.2 0.038 13.9 0.1 2.0 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|332796196|ref|YP_004457696.1| - 0.0073 16.6 0.0 0.02 15.2 0.0 1.7 2 0 0 2 2 1 1 AAA domain ATPase_2 PF01637.18 gi|332796196|ref|YP_004457696.1| - 0.0091 15.9 1.3 0.23 11.3 0.0 2.2 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_17 PF13207.6 gi|332796196|ref|YP_004457696.1| - 0.01 16.3 0.4 0.1 13.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain GTP_EFTU PF00009.27 gi|332796196|ref|YP_004457696.1| - 0.011 15.3 0.2 2.6 7.5 0.1 2.6 2 1 0 2 2 2 0 Elongation factor Tu GTP binding domain DDR PF08841.10 gi|332796196|ref|YP_004457696.1| - 0.018 14.1 0.6 0.032 13.2 0.6 1.4 1 0 0 1 1 1 0 Diol dehydratase reactivase ATPase-like domain Viral_helicase1 PF01443.18 gi|332796196|ref|YP_004457696.1| - 0.02 14.7 0.1 0.035 13.9 0.1 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|332796196|ref|YP_004457696.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|332796196|ref|YP_004457696.1| - 0.022 14.5 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|332796196|ref|YP_004457696.1| - 0.024 13.8 1.1 0.027 13.6 0.1 1.5 2 0 0 2 2 2 0 NB-ARC domain AAA_16 PF13191.6 gi|332796196|ref|YP_004457696.1| - 0.025 15.0 0.0 0.052 13.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|332796196|ref|YP_004457696.1| - 0.027 13.4 0.1 0.04 12.8 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain SRP54 PF00448.22 gi|332796196|ref|YP_004457696.1| - 0.029 14.0 0.1 0.24 11.0 0.1 2.3 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|332796196|ref|YP_004457696.1| - 0.041 13.1 0.1 0.087 12.1 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin MnmE_helical PF12631.7 gi|332796196|ref|YP_004457696.1| - 0.049 13.8 0.0 0.073 13.2 0.0 1.5 1 1 0 1 1 1 0 MnmE helical domain DUF815 PF05673.13 gi|332796196|ref|YP_004457696.1| - 0.05 12.8 0.7 0.091 11.9 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF815) AAA_19 PF13245.6 gi|332796196|ref|YP_004457696.1| - 0.062 13.6 0.6 0.088 13.1 0.6 1.6 1 1 0 1 1 1 0 AAA domain Ploopntkinase3 PF18751.1 gi|332796196|ref|YP_004457696.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_29 PF13555.6 gi|332796196|ref|YP_004457696.1| - 0.11 12.3 0.2 0.28 11.0 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Colicin PF01024.19 gi|332796196|ref|YP_004457696.1| - 0.18 11.7 3.6 0.29 11.0 0.1 2.5 1 1 1 2 2 2 0 Colicin pore forming domain DUF2250 PF10007.9 gi|332796197|ref|YP_004457697.1| - 1.7e-69 229.9 16.0 3.8e-38 129.5 5.1 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|332796197|ref|YP_004457697.1| - 2.1e-05 24.3 2.7 0.0016 18.2 0.1 2.5 2 1 0 2 2 2 2 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|332796197|ref|YP_004457697.1| - 0.0006 19.6 3.0 0.06 13.2 0.1 3.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HemN_C PF06969.16 gi|332796197|ref|YP_004457697.1| - 0.0027 17.7 0.5 0.18 11.9 0.1 3.0 3 0 0 3 3 3 1 HemN C-terminal domain MarR_2 PF12802.7 gi|332796197|ref|YP_004457697.1| - 0.014 15.2 0.1 0.12 12.3 0.0 2.4 2 0 0 2 2 2 0 MarR family Cdc6_C PF09079.11 gi|332796197|ref|YP_004457697.1| - 0.018 15.0 0.0 0.99 9.4 0.0 2.8 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_45 PF14947.6 gi|332796197|ref|YP_004457697.1| - 0.027 14.4 1.7 0.42 10.6 0.6 2.9 1 1 0 2 2 2 0 Winged helix-turn-helix DUF3116 PF11313.8 gi|332796197|ref|YP_004457697.1| - 0.035 14.0 2.2 1.9 8.4 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3116) HTH_27 PF13463.6 gi|332796197|ref|YP_004457697.1| - 0.036 14.6 3.1 2.2 8.9 0.0 3.2 4 0 0 4 4 3 0 Winged helix DNA-binding domain MarR PF01047.22 gi|332796197|ref|YP_004457697.1| - 0.054 13.4 0.4 1.4 8.9 0.0 2.8 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 gi|332796197|ref|YP_004457697.1| - 0.064 13.2 0.7 27 4.8 0.1 3.4 3 1 0 3 3 3 0 Crp-like helix-turn-helix domain Peptidase_M19 PF01244.21 gi|332796197|ref|YP_004457697.1| - 0.082 12.1 0.1 0.21 10.7 0.1 1.8 1 1 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) DUF2067 PF09840.9 gi|332796197|ref|YP_004457697.1| - 0.14 11.7 6.6 2.2 7.8 1.8 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) Matrilin_ccoil PF10393.9 gi|332796197|ref|YP_004457697.1| - 0.26 11.2 0.2 0.26 11.2 0.2 2.2 3 0 0 3 3 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Abhydrolase_1 PF00561.20 gi|332796198|ref|YP_004457698.1| - 1e-14 54.8 0.2 3.5e-12 46.5 0.1 2.0 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|332796198|ref|YP_004457698.1| - 5.6e-12 45.4 0.1 6.1e-10 38.8 0.2 2.1 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|332796198|ref|YP_004457698.1| - 1.3e-09 39.0 0.0 1.4e-09 38.9 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|332796198|ref|YP_004457698.1| - 0.00029 20.7 0.1 0.00071 19.4 0.1 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF1057 PF06342.12 gi|332796198|ref|YP_004457698.1| - 0.0016 17.6 0.0 0.002 17.2 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Ndr PF03096.14 gi|332796198|ref|YP_004457698.1| - 0.0024 16.6 0.0 0.0036 16.0 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 gi|332796198|ref|YP_004457698.1| - 0.0026 17.8 0.0 0.0044 17.1 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|332796198|ref|YP_004457698.1| - 0.0067 16.3 0.0 0.0092 15.8 0.0 1.2 1 0 0 1 1 1 1 Phospholipase/Carboxylesterase Pyr_redox_2 PF07992.14 gi|332796199|ref|YP_004457699.1| - 5.1e-21 75.2 0.0 2.2e-10 40.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332796199|ref|YP_004457699.1| - 0.00029 20.2 0.0 0.093 12.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332796199|ref|YP_004457699.1| - 0.0043 17.6 0.0 1.2 9.7 0.0 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|332796199|ref|YP_004457699.1| - 0.01 14.9 0.0 6 5.8 0.0 2.9 3 0 0 3 3 3 0 Lycopene cyclase protein DUF1641 PF07849.11 gi|332796200|ref|YP_004457700.1| - 3.8e-15 55.5 1.7 1.2e-14 53.9 0.4 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1641) PhaP_Bmeg PF09602.10 gi|332796200|ref|YP_004457700.1| - 0.038 13.9 0.5 5.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF4363 PF14276.6 gi|332796200|ref|YP_004457700.1| - 0.054 13.6 1.4 3.5 7.8 0.0 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4363) T4_Rnl2_C PF18043.1 gi|332796200|ref|YP_004457700.1| - 0.11 12.7 0.2 6.1 7.1 0.0 2.4 2 0 0 2 2 2 0 T4 RNA ligase 2 C-terminal LPD14 PF18827.1 gi|332796200|ref|YP_004457700.1| - 0.11 12.7 2.0 1.4 9.2 0.1 2.8 1 1 2 3 3 3 0 Large polyvalent protein-associated domain 14 DED PF01335.21 gi|332796200|ref|YP_004457700.1| - 0.12 12.7 0.1 70 3.8 0.0 3.7 3 1 0 4 4 4 0 Death effector domain Glyco_hydro_4C PF11975.8 gi|332796200|ref|YP_004457700.1| - 0.16 12.0 0.1 0.55 10.3 0.0 1.8 2 0 0 2 2 2 0 Family 4 glycosyl hydrolase C-terminal domain TMP PF05017.14 gi|332796200|ref|YP_004457700.1| - 0.56 11.1 2.5 44 5.4 0.1 4.2 3 0 0 3 3 3 0 TMP repeat AAA_26 PF13500.6 gi|332796201|ref|YP_004457701.1| - 0.055 13.3 0.0 0.17 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain Proteasome PF00227.26 gi|332796202|ref|YP_004457702.1| - 1e-50 171.9 0.7 1.2e-50 171.7 0.7 1.0 1 0 0 1 1 1 1 Proteasome subunit PBP PF01161.20 gi|332796203|ref|YP_004457703.1| - 3.6e-36 124.4 0.0 4.3e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Rep_fac_C PF08542.11 gi|332796204|ref|YP_004457704.1| - 5.1e-26 90.9 0.7 3.2e-25 88.3 0.2 2.4 2 0 0 2 2 2 1 Replication factor C C-terminal domain AAA PF00004.29 gi|332796204|ref|YP_004457704.1| - 1e-15 58.3 0.0 2.8e-15 56.9 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|332796204|ref|YP_004457704.1| - 5.1e-14 52.4 0.0 7e-10 38.9 0.1 2.3 1 1 1 2 2 2 2 DNA polymerase III, delta subunit RuvB_N PF05496.12 gi|332796204|ref|YP_004457704.1| - 4.5e-07 29.8 0.0 1.6e-06 28.0 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|332796204|ref|YP_004457704.1| - 2e-06 27.8 0.0 1e-05 25.6 0.0 2.1 2 1 0 2 2 2 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|332796204|ref|YP_004457704.1| - 7.4e-06 26.3 0.3 0.14 12.4 0.0 2.9 2 1 1 3 3 3 2 AAA domain DNA_pol3_delta PF06144.13 gi|332796204|ref|YP_004457704.1| - 2e-05 24.5 0.4 0.00023 21.0 0.1 2.3 2 1 0 2 2 2 1 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|332796204|ref|YP_004457704.1| - 2.2e-05 24.9 0.1 0.031 14.7 0.0 2.9 2 1 1 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|332796204|ref|YP_004457704.1| - 2.3e-05 24.4 0.2 0.00018 21.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_assoc_2 PF16193.5 gi|332796204|ref|YP_004457704.1| - 2.5e-05 24.5 0.0 7.3e-05 23.0 0.0 1.8 1 0 0 1 1 1 1 AAA C-terminal domain AAA_3 PF07726.11 gi|332796204|ref|YP_004457704.1| - 3.2e-05 23.8 0.0 6.7e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ResIII PF04851.15 gi|332796204|ref|YP_004457704.1| - 0.0002 21.4 0.0 0.0015 18.5 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit AAA_18 PF13238.6 gi|332796204|ref|YP_004457704.1| - 0.00054 20.5 0.0 0.016 15.7 0.0 2.6 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|332796204|ref|YP_004457704.1| - 0.00065 19.6 0.0 0.0013 18.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|332796204|ref|YP_004457704.1| - 0.00081 18.7 0.0 0.003 16.8 0.0 1.9 2 1 0 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|332796204|ref|YP_004457704.1| - 0.00087 19.1 0.0 0.0021 17.8 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein TniB PF05621.11 gi|332796204|ref|YP_004457704.1| - 0.00089 18.7 0.1 0.11 11.9 0.0 2.5 1 1 0 2 2 2 1 Bacterial TniB protein AAA_24 PF13479.6 gi|332796204|ref|YP_004457704.1| - 0.0011 18.8 0.3 0.0044 16.8 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_5 PF07728.14 gi|332796204|ref|YP_004457704.1| - 0.0015 18.5 0.1 0.012 15.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|332796204|ref|YP_004457704.1| - 0.0015 17.9 0.0 0.08 12.3 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|332796204|ref|YP_004457704.1| - 0.0022 17.5 0.0 0.0036 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region T2SSE PF00437.20 gi|332796204|ref|YP_004457704.1| - 0.0045 16.1 0.0 0.0096 15.0 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein PhoH PF02562.16 gi|332796204|ref|YP_004457704.1| - 0.0058 16.1 0.1 0.43 10.0 0.0 2.5 1 1 1 2 2 2 1 PhoH-like protein AAA_25 PF13481.6 gi|332796204|ref|YP_004457704.1| - 0.0065 16.1 0.4 0.018 14.6 0.1 1.9 2 2 0 2 2 2 1 AAA domain DUF815 PF05673.13 gi|332796204|ref|YP_004457704.1| - 0.0065 15.7 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF815) FtsK_SpoIIIE PF01580.18 gi|332796204|ref|YP_004457704.1| - 0.0097 15.3 0.0 0.044 13.1 0.0 2.1 2 1 0 2 2 2 1 FtsK/SpoIIIE family Sigma54_activat PF00158.26 gi|332796204|ref|YP_004457704.1| - 0.014 15.1 0.0 0.37 10.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2075 PF09848.9 gi|332796204|ref|YP_004457704.1| - 0.018 14.3 0.1 0.17 11.1 0.1 2.1 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activ_2 PF14532.6 gi|332796204|ref|YP_004457704.1| - 0.02 15.0 0.1 0.29 11.3 0.0 2.6 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|332796204|ref|YP_004457704.1| - 0.023 15.0 0.6 0.25 11.7 0.2 2.5 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|332796204|ref|YP_004457704.1| - 0.043 13.5 0.1 0.2 11.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|332796204|ref|YP_004457704.1| - 0.048 13.8 0.1 0.13 12.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain DEAD PF00270.29 gi|332796204|ref|YP_004457704.1| - 0.072 12.9 0.4 16 5.2 0.0 2.8 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_28 PF13521.6 gi|332796204|ref|YP_004457704.1| - 0.082 13.1 0.0 0.18 12.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|332796204|ref|YP_004457704.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase RNA_helicase PF00910.22 gi|332796204|ref|YP_004457704.1| - 0.11 12.9 0.0 0.23 11.8 0.0 1.6 1 1 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|332796205|ref|YP_004457705.1| - 2.4e-15 57.1 0.0 5.8e-15 55.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|332796205|ref|YP_004457705.1| - 1.8e-10 40.8 0.0 3.6e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|332796205|ref|YP_004457705.1| - 1.9e-08 34.5 2.6 6e-08 32.9 0.1 2.9 4 0 0 4 4 2 1 AAA C-terminal domain AAA_5 PF07728.14 gi|332796205|ref|YP_004457705.1| - 8.5e-08 32.3 0.0 1.7e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|332796205|ref|YP_004457705.1| - 2.9e-07 29.9 0.0 8.5e-07 28.4 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Rad17 PF03215.15 gi|332796205|ref|YP_004457705.1| - 3.7e-07 30.2 0.0 9.3e-07 28.9 0.0 1.6 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|332796205|ref|YP_004457705.1| - 1.4e-06 28.8 0.0 1.1e-05 25.8 0.0 2.4 2 1 1 3 3 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|332796205|ref|YP_004457705.1| - 2.3e-06 27.6 0.0 6e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|332796205|ref|YP_004457705.1| - 1.2e-05 25.7 0.0 0.00051 20.3 0.0 3.0 2 1 1 3 3 3 1 AAA domain AAA_25 PF13481.6 gi|332796205|ref|YP_004457705.1| - 7.9e-05 22.3 0.0 0.00016 21.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796205|ref|YP_004457705.1| - 0.00021 21.9 0.2 0.0025 18.3 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_17 PF13207.6 gi|332796205|ref|YP_004457705.1| - 0.0003 21.2 0.1 0.0015 18.9 0.0 2.2 2 0 0 2 2 1 1 AAA domain DNA_pol3_delta PF06144.13 gi|332796205|ref|YP_004457705.1| - 0.00035 20.4 1.8 0.0014 18.4 0.0 2.7 3 1 1 4 4 3 1 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|332796205|ref|YP_004457705.1| - 0.0011 19.3 0.0 0.0057 17.0 0.0 2.3 2 0 0 2 2 1 1 RNA helicase AAA_33 PF13671.6 gi|332796205|ref|YP_004457705.1| - 0.0012 19.1 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|332796205|ref|YP_004457705.1| - 0.0012 18.6 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|332796205|ref|YP_004457705.1| - 0.0014 18.4 0.0 0.0054 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|332796205|ref|YP_004457705.1| - 0.0014 18.1 0.0 0.0025 17.2 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Parvo_NS1 PF01057.17 gi|332796205|ref|YP_004457705.1| - 0.0014 17.8 0.0 0.0035 16.5 0.0 1.6 2 0 0 2 2 1 1 Parvovirus non-structural protein NS1 AAA_28 PF13521.6 gi|332796205|ref|YP_004457705.1| - 0.002 18.4 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|332796205|ref|YP_004457705.1| - 0.0021 18.0 0.2 0.036 14.0 0.0 2.8 1 1 2 3 3 3 1 NACHT domain TIP49_C PF17856.1 gi|332796205|ref|YP_004457705.1| - 0.0022 18.1 0.7 0.0059 16.7 0.1 2.2 2 0 0 2 2 1 1 TIP49 AAA-lid domain PPV_E1_C PF00519.17 gi|332796205|ref|YP_004457705.1| - 0.0026 16.7 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Papillomavirus helicase RFC1 PF08519.12 gi|332796205|ref|YP_004457705.1| - 0.0026 17.9 0.2 0.0063 16.7 0.2 1.6 1 0 0 1 1 1 1 Replication factor RFC1 C terminal domain TsaE PF02367.17 gi|332796205|ref|YP_004457705.1| - 0.0028 17.6 0.0 0.0052 16.8 0.0 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|332796205|ref|YP_004457705.1| - 0.0032 16.7 0.0 0.009 15.2 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain AAA_2 PF07724.14 gi|332796205|ref|YP_004457705.1| - 0.0036 17.4 0.0 0.0082 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|332796205|ref|YP_004457705.1| - 0.0044 16.3 0.0 0.0091 15.2 0.0 1.4 1 0 0 1 1 1 1 TIP49 P-loop domain ATPase_2 PF01637.18 gi|332796205|ref|YP_004457705.1| - 0.012 15.6 0.1 0.052 13.5 0.0 2.2 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea ATPase PF06745.13 gi|332796205|ref|YP_004457705.1| - 0.012 14.9 0.0 0.022 14.1 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_6 PF12774.7 gi|332796205|ref|YP_004457705.1| - 0.013 14.5 0.0 0.05 12.6 0.0 1.8 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region Sigma54_activ_2 PF14532.6 gi|332796205|ref|YP_004457705.1| - 0.014 15.5 0.0 0.029 14.5 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|332796205|ref|YP_004457705.1| - 0.016 15.0 0.7 0.063 13.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|332796205|ref|YP_004457705.1| - 0.022 14.3 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|332796205|ref|YP_004457705.1| - 0.025 13.8 0.0 0.075 12.3 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Sigma54_activat PF00158.26 gi|332796205|ref|YP_004457705.1| - 0.032 14.0 0.0 0.17 11.6 0.0 2.0 1 1 0 1 1 1 0 Sigma-54 interaction domain Hydin_ADK PF17213.3 gi|332796205|ref|YP_004457705.1| - 0.036 14.3 0.2 0.09 13.0 0.0 1.8 2 0 0 2 2 1 0 Hydin Adenylate kinase-like domain ABC_tran PF00005.27 gi|332796205|ref|YP_004457705.1| - 0.041 14.4 0.4 0.15 12.6 0.0 2.1 3 0 0 3 3 1 0 ABC transporter AAA_19 PF13245.6 gi|332796205|ref|YP_004457705.1| - 0.067 13.5 0.0 0.21 11.9 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_30 PF13604.6 gi|332796205|ref|YP_004457705.1| - 0.072 12.8 0.1 0.17 11.6 0.1 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|332796205|ref|YP_004457705.1| - 0.082 12.3 0.0 0.21 11.0 0.0 1.6 2 0 0 2 2 1 0 PhoH-like protein SRP54 PF00448.22 gi|332796205|ref|YP_004457705.1| - 0.098 12.3 0.1 0.83 9.3 0.0 2.3 2 1 0 2 2 2 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|332796205|ref|YP_004457705.1| - 0.11 11.5 0.0 0.28 10.2 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein PduV-EutP PF10662.9 gi|332796205|ref|YP_004457705.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation MoaC PF01967.21 gi|332796206|ref|YP_004457706.1| - 9.9e-51 171.4 6.6 1.2e-50 171.2 6.6 1.0 1 0 0 1 1 1 1 MoaC family NfeD PF01957.18 gi|332796206|ref|YP_004457706.1| - 0.056 13.8 2.5 0.73 10.2 0.4 2.4 3 0 0 3 3 3 0 NfeD-like C-terminal, partner-binding Cdc6_C PF09079.11 gi|332796207|ref|YP_004457707.1| - 1.7e-20 72.8 0.1 4.7e-20 71.3 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|332796207|ref|YP_004457707.1| - 7.8e-15 55.4 0.0 1.1e-13 51.6 0.0 2.5 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|332796207|ref|YP_004457707.1| - 3.1e-05 24.4 0.2 0.00054 20.4 0.2 2.8 1 1 0 1 1 1 1 AAA ATPase domain TniB PF05621.11 gi|332796207|ref|YP_004457707.1| - 4.6e-05 22.9 0.0 8.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA PF00004.29 gi|332796207|ref|YP_004457707.1| - 0.00022 21.7 0.0 0.00062 20.2 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|332796207|ref|YP_004457707.1| - 0.001 18.8 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|332796207|ref|YP_004457707.1| - 0.0044 16.9 0.0 0.0085 16.0 0.0 1.5 1 0 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|332796207|ref|YP_004457707.1| - 0.0072 15.4 0.1 0.013 14.6 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF853 PF05872.12 gi|332796207|ref|YP_004457707.1| - 0.011 14.4 0.2 0.041 12.5 0.1 1.8 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) NB-ARC PF00931.22 gi|332796207|ref|YP_004457707.1| - 0.017 14.3 0.0 0.033 13.4 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|332796207|ref|YP_004457707.1| - 0.019 14.7 1.2 0.15 11.8 0.1 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|332796207|ref|YP_004457707.1| - 0.04 13.4 0.0 0.15 11.6 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region DUF87 PF01935.17 gi|332796207|ref|YP_004457707.1| - 0.067 13.3 1.0 0.2 11.7 0.3 2.1 2 1 0 2 2 2 0 Helicase HerA, central domain DUF2075 PF09848.9 gi|332796207|ref|YP_004457707.1| - 0.069 12.4 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|332796207|ref|YP_004457707.1| - 0.069 12.5 0.0 0.14 11.5 0.0 1.5 1 0 0 1 1 1 0 KaiC IIGP PF05049.13 gi|332796207|ref|YP_004457707.1| - 0.072 12.1 0.3 0.22 10.5 0.0 1.7 1 1 0 2 2 2 0 Interferon-inducible GTPase (IIGP) AAA_19 PF13245.6 gi|332796207|ref|YP_004457707.1| - 0.084 13.2 0.1 6.9 7.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain DAP3 PF10236.9 gi|332796207|ref|YP_004457707.1| - 0.13 11.4 0.0 0.51 9.5 0.1 1.8 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 AAA_30 PF13604.6 gi|332796207|ref|YP_004457707.1| - 0.15 11.7 0.0 0.57 9.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain ResIII PF04851.15 gi|332796207|ref|YP_004457707.1| - 0.16 12.0 0.1 0.34 10.9 0.0 1.6 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit PfkB PF00294.24 gi|332796207|ref|YP_004457707.1| - 0.18 11.1 0.0 0.29 10.4 0.0 1.3 1 0 0 1 1 1 0 pfkB family carbohydrate kinase NTPase_1 PF03266.15 gi|332796207|ref|YP_004457707.1| - 0.22 11.4 2.9 0.44 10.4 1.2 2.2 2 1 0 2 2 2 0 NTPase ScsC_N PF18312.1 gi|332796207|ref|YP_004457707.1| - 0.43 10.4 1.5 3.5 7.5 0.2 2.4 2 0 0 2 2 2 0 Copper resistance protein ScsC N-terminal domain THUMP PF02926.17 gi|332796208|ref|YP_004457708.1| - 4.4e-13 49.5 0.2 5.5e-13 49.2 0.2 1.1 1 0 0 1 1 1 1 THUMP domain Sld5 PF05916.11 gi|332796209|ref|YP_004457709.1| - 3.3e-11 43.6 2.1 4.5e-11 43.2 2.1 1.2 1 0 0 1 1 1 1 GINS complex protein MCM PF00493.23 gi|332796210|ref|YP_004457710.1| - 1.3e-96 322.1 0.0 2.3e-96 321.2 0.0 1.4 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|332796210|ref|YP_004457710.1| - 4.7e-36 123.4 0.1 8.3e-36 122.6 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|332796210|ref|YP_004457710.1| - 7.8e-30 103.2 1.1 1.6e-29 102.1 1.1 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain AAA_5 PF07728.14 gi|332796210|ref|YP_004457710.1| - 1.4e-08 34.9 0.0 4.5e-08 33.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM_N PF14551.6 gi|332796210|ref|YP_004457710.1| - 1.5e-07 32.0 0.2 4.1e-07 30.5 0.2 1.8 1 0 0 1 1 1 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|332796210|ref|YP_004457710.1| - 1.3e-06 28.0 0.1 0.00011 21.7 0.0 2.3 1 1 1 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|332796210|ref|YP_004457710.1| - 1.3e-05 25.1 0.0 2.5e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|332796210|ref|YP_004457710.1| - 7.8e-05 22.4 0.1 0.00048 19.9 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain DUF3987 PF13148.6 gi|332796210|ref|YP_004457710.1| - 0.018 14.1 0.1 4.6 6.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3987) MASE3 PF17159.4 gi|332796212|ref|YP_004457712.1| - 0.011 15.4 4.9 0.012 15.2 4.9 1.1 1 0 0 1 1 1 0 Membrane-associated sensor domain Herpes_LMP1 PF05297.11 gi|332796212|ref|YP_004457712.1| - 0.16 11.1 7.9 0.18 10.9 7.9 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) PEP-CTERM PF07589.11 gi|332796212|ref|YP_004457712.1| - 9.9 6.4 8.1 4.2 7.6 0.2 2.5 2 0 0 2 2 2 0 PEP-CTERM motif CarS-like PF01864.17 gi|332796213|ref|YP_004457713.1| - 1.1e-37 129.6 7.8 7.4e-37 127.0 7.8 1.8 1 1 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|332796213|ref|YP_004457713.1| - 0.00033 20.5 1.8 0.00033 20.5 1.8 1.8 2 0 0 2 2 2 1 Cytidylyltransferase family ATPase PF06745.13 gi|332796214|ref|YP_004457714.1| - 2.5e-05 23.7 1.0 0.05 12.9 0.2 2.2 1 1 1 2 2 2 2 KaiC AAA_16 PF13191.6 gi|332796214|ref|YP_004457714.1| - 0.00014 22.3 0.0 0.00019 21.9 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_24 PF13479.6 gi|332796214|ref|YP_004457714.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332796214|ref|YP_004457714.1| - 0.0083 16.5 0.0 0.011 16.2 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|332796214|ref|YP_004457714.1| - 0.0086 16.0 0.2 0.0089 16.0 0.2 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|332796214|ref|YP_004457714.1| - 0.0092 15.3 0.0 0.013 14.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|332796214|ref|YP_004457714.1| - 0.012 15.2 0.3 0.47 10.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|332796214|ref|YP_004457714.1| - 0.013 14.7 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|332796214|ref|YP_004457714.1| - 0.027 14.0 0.2 0.079 12.5 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_22 PF13401.6 gi|332796214|ref|YP_004457714.1| - 0.041 14.2 0.0 0.071 13.4 0.0 1.4 1 1 0 1 1 1 0 AAA domain RecA PF00154.21 gi|332796214|ref|YP_004457714.1| - 0.1 12.0 0.1 0.21 11.0 0.1 1.7 1 1 0 1 1 1 0 recA bacterial DNA recombination protein Viral_helicase1 PF01443.18 gi|332796214|ref|YP_004457714.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CLP1_P PF16575.5 gi|332796216|ref|YP_004457716.1| - 2.5e-18 66.6 0.2 2.7e-16 59.9 0.2 2.2 1 1 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop Thymidylate_kin PF02223.17 gi|332796217|ref|YP_004457717.1| - 3.1e-42 144.4 0.4 3.5e-42 144.2 0.4 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.6 gi|332796217|ref|YP_004457717.1| - 6.5e-07 30.0 0.0 2.8e-06 27.9 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|332796217|ref|YP_004457717.1| - 5.7e-05 23.4 0.0 6.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|332796217|ref|YP_004457717.1| - 0.00017 21.6 4.6 0.019 14.9 4.6 2.2 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_22 PF13401.6 gi|332796217|ref|YP_004457717.1| - 0.00018 21.8 0.0 0.00032 21.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain KTI12 PF08433.10 gi|332796217|ref|YP_004457717.1| - 0.0003 20.3 0.2 0.0026 17.3 0.0 2.0 2 0 0 2 2 2 1 Chromatin associated protein KTI12 SRP54 PF00448.22 gi|332796217|ref|YP_004457717.1| - 0.00064 19.4 0.8 0.0012 18.5 0.0 1.9 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|332796217|ref|YP_004457717.1| - 0.0045 16.7 0.0 0.0061 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain APS_kinase PF01583.20 gi|332796217|ref|YP_004457717.1| - 0.0072 16.2 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase NACHT PF05729.12 gi|332796217|ref|YP_004457717.1| - 0.0093 15.9 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_2 PF07724.14 gi|332796217|ref|YP_004457717.1| - 0.011 15.9 1.0 0.05 13.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) PRK PF00485.18 gi|332796217|ref|YP_004457717.1| - 0.024 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|332796217|ref|YP_004457717.1| - 0.03 14.5 0.1 0.037 14.2 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|332796217|ref|YP_004457717.1| - 0.061 13.0 0.6 0.11 12.2 0.2 1.8 2 1 0 2 2 2 0 AAA domain SKI PF01202.22 gi|332796217|ref|YP_004457717.1| - 0.071 13.2 0.9 5.2 7.2 0.1 2.3 2 0 0 2 2 2 0 Shikimate kinase AAA_17 PF13207.6 gi|332796217|ref|YP_004457717.1| - 0.08 13.4 0.4 0.84 10.1 0.3 2.5 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|332796217|ref|YP_004457717.1| - 0.094 12.8 1.8 0.2 11.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain TusA PF01206.17 gi|332796217|ref|YP_004457717.1| - 0.1 12.5 0.1 0.35 10.7 0.1 1.9 1 0 0 1 1 1 0 Sulfurtransferase TusA AAA_5 PF07728.14 gi|332796217|ref|YP_004457717.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|332796217|ref|YP_004457717.1| - 0.14 12.7 0.8 0.22 12.0 0.8 1.7 1 1 0 1 1 1 0 ABC transporter AAA_31 PF13614.6 gi|332796217|ref|YP_004457717.1| - 0.24 11.3 5.1 0.43 10.5 0.0 2.7 2 1 1 3 3 3 0 AAA domain Auto_anti-p27 PF06677.12 gi|332796218|ref|YP_004457718.1| - 1.3e-15 57.2 0.1 1.8e-15 56.8 0.1 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|332796218|ref|YP_004457718.1| - 0.00063 19.7 0.1 0.0015 18.5 0.1 1.6 1 1 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|332796218|ref|YP_004457718.1| - 0.0018 17.7 0.3 0.0044 16.5 0.3 1.8 1 0 0 1 1 1 1 TFIIB zinc-binding Rad50_zn_hook PF04423.14 gi|332796218|ref|YP_004457718.1| - 0.05 13.4 0.9 0.14 12.0 0.2 2.2 1 1 1 2 2 2 0 Rad50 zinc hook motif zf-RRN7 PF11781.8 gi|332796218|ref|YP_004457718.1| - 0.074 12.8 0.1 0.13 12.0 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|332796218|ref|YP_004457718.1| - 0.085 12.3 1.3 0.19 11.2 1.3 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|332796218|ref|YP_004457718.1| - 0.13 12.2 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Prim_Zn_Ribbon PF08273.12 gi|332796218|ref|YP_004457718.1| - 1.4 9.3 2.9 8.6 6.7 0.7 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase UPF0147 PF03685.13 gi|332796219|ref|YP_004457719.1| - 1.6e-35 121.0 3.0 1.8e-35 120.8 3.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0147) UPF0253 PF06786.12 gi|332796219|ref|YP_004457719.1| - 0.018 15.3 0.2 0.25 11.7 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0253) 2-Hacid_dh_C PF02826.19 gi|332796221|ref|YP_004457721.1| - 2.9e-66 222.2 0.0 4.2e-66 221.7 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|332796221|ref|YP_004457721.1| - 4.2e-33 113.8 0.0 4.8e-33 113.7 0.0 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|332796221|ref|YP_004457721.1| - 0.0012 19.1 0.0 0.0023 18.1 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|332796221|ref|YP_004457721.1| - 0.0089 16.6 0.1 0.028 15.0 0.1 1.9 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|332796221|ref|YP_004457721.1| - 0.025 15.1 0.0 0.057 13.9 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|332796221|ref|YP_004457721.1| - 0.098 12.9 0.3 0.82 9.9 0.1 2.5 1 1 1 2 2 2 0 TrkA-N domain CPSF73-100_C PF11718.8 gi|332796221|ref|YP_004457721.1| - 0.13 11.8 0.0 0.25 10.8 0.0 1.4 1 0 0 1 1 1 0 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term Helicase_RecD PF05127.14 gi|332796222|ref|YP_004457722.1| - 1.1e-42 145.8 0.0 1.9e-42 145.1 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|332796222|ref|YP_004457722.1| - 3.2e-31 108.5 0.0 1.7e-20 73.4 0.0 2.6 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|332796222|ref|YP_004457722.1| - 5.7e-20 71.0 0.0 1.3e-19 69.9 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_7 PF13508.7 gi|332796222|ref|YP_004457722.1| - 2.5e-06 27.8 0.0 1.3e-05 25.5 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|332796222|ref|YP_004457722.1| - 2.6e-06 27.6 0.0 1e-05 25.8 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family AAA_22 PF13401.6 gi|332796222|ref|YP_004457722.1| - 2e-05 24.9 0.0 0.00022 21.5 0.0 2.6 1 1 1 2 2 2 1 AAA domain Acetyltransf_10 PF13673.7 gi|332796222|ref|YP_004457722.1| - 4.8e-05 23.3 0.0 0.00011 22.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AAA_30 PF13604.6 gi|332796222|ref|YP_004457722.1| - 0.00096 18.9 0.0 0.0029 17.3 0.0 1.8 1 1 1 2 2 2 1 AAA domain MFS_1 PF07690.16 gi|332796223|ref|YP_004457723.1| - 5.9e-22 78.1 43.1 6.5e-11 41.8 22.3 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF5391 PF17369.2 gi|332796223|ref|YP_004457723.1| - 1 9.4 19.6 1.3 9.1 3.1 2.9 2 1 0 2 2 2 0 Family of unknown function (DUF5391) Usp PF00582.26 gi|332796226|ref|YP_004457726.1| - 3.2e-40 137.9 1.9 3.5e-40 137.8 1.9 1.0 1 0 0 1 1 1 1 Universal stress protein family Pyr_redox_2 PF07992.14 gi|332796227|ref|YP_004457727.1| - 5.9e-44 150.5 0.0 8.3e-44 150.0 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332796227|ref|YP_004457727.1| - 1.2e-21 77.0 0.8 1.8e-14 54.0 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332796227|ref|YP_004457727.1| - 4.9e-15 55.5 8.8 8e-05 21.9 2.8 4.1 3 1 0 3 3 3 3 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|332796227|ref|YP_004457727.1| - 4.2e-12 46.1 1.1 2.2e-05 24.6 0.1 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Pyr_redox_dim PF02852.22 gi|332796227|ref|YP_004457727.1| - 2.5e-11 43.8 0.2 8.7e-11 42.1 0.2 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FAD_oxidored PF12831.7 gi|332796227|ref|YP_004457727.1| - 2.7e-11 43.5 0.1 1.3e-07 31.3 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|332796227|ref|YP_004457727.1| - 4.6e-11 42.5 0.5 3.8e-06 26.4 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332796227|ref|YP_004457727.1| - 1.1e-10 40.8 1.5 4.6e-06 25.6 0.3 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|332796227|ref|YP_004457727.1| - 3.6e-08 32.9 3.4 0.00019 20.7 0.2 2.7 3 0 0 3 3 3 2 FAD binding domain FAD_binding_3 PF01494.19 gi|332796227|ref|YP_004457727.1| - 1.9e-07 30.7 0.2 0.0027 17.0 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|332796227|ref|YP_004457727.1| - 2.4e-06 27.0 0.3 0.032 13.5 0.0 2.9 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain DAO PF01266.24 gi|332796227|ref|YP_004457727.1| - 4.3e-05 23.2 0.7 0.071 12.7 0.1 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|332796227|ref|YP_004457727.1| - 0.0012 18.1 0.2 0.055 12.7 0.1 2.3 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|332796227|ref|YP_004457727.1| - 0.0031 17.4 0.1 2.8 7.8 0.0 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|332796227|ref|YP_004457727.1| - 0.0044 15.9 0.1 0.6 8.9 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|332796227|ref|YP_004457727.1| - 0.025 13.7 0.3 1.3 7.9 0.1 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|332796227|ref|YP_004457727.1| - 0.063 12.8 1.2 0.41 10.2 0.0 2.7 3 1 1 4 4 4 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BPL_LplA_LipB PF03099.19 gi|332796228|ref|YP_004457728.1| - 1.1e-16 61.0 0.0 1.8e-16 60.2 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family DUF1934 PF09148.10 gi|332796228|ref|YP_004457728.1| - 0.031 14.3 0.1 0.057 13.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1934) Sua5_yciO_yrdC PF01300.18 gi|332796229|ref|YP_004457729.1| - 3.3e-57 192.9 0.0 4.6e-57 192.4 0.0 1.2 1 0 0 1 1 1 1 Telomere recombination SUA5 PF03481.13 gi|332796229|ref|YP_004457729.1| - 5.1e-27 95.1 0.0 9.7e-27 94.2 0.0 1.5 2 0 0 2 2 2 1 Putative GTP-binding controlling metal-binding UL21a PF17636.2 gi|332796229|ref|YP_004457729.1| - 0.064 13.3 1.4 0.26 11.3 0.1 2.2 2 0 0 2 2 2 0 Viral Unique Long protein 21a Oxidored_q6 PF01058.22 gi|332796230|ref|YP_004457730.1| - 5.7e-23 81.2 0.0 8.1e-23 80.7 0.0 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit DUF4147 PF13660.6 gi|332796231|ref|YP_004457731.1| - 9.1e-55 185.7 0.0 1.4e-54 185.1 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|332796231|ref|YP_004457731.1| - 5.3e-25 87.7 0.2 1.3e-24 86.5 0.1 1.7 2 0 0 2 2 2 1 MOFRL family Ank_3 PF13606.6 gi|332796231|ref|YP_004457731.1| - 0.14 12.8 0.0 2.3 9.1 0.0 2.9 3 0 0 3 3 3 0 Ankyrin repeat DUF2250 PF10007.9 gi|332796232|ref|YP_004457732.1| - 0.0025 17.9 0.0 0.007 16.4 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) Exotox-A_cataly PF09009.10 gi|332796232|ref|YP_004457732.1| - 0.025 14.3 0.0 0.032 14.0 0.0 1.2 1 0 0 1 1 1 0 Exotoxin A catalytic Fe_dep_repr_C PF02742.15 gi|332796233|ref|YP_004457733.1| - 7.7e-29 99.6 0.3 1.7e-28 98.5 0.1 1.8 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|332796233|ref|YP_004457733.1| - 5.8e-10 39.2 0.1 2e-09 37.5 0.1 1.9 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|332796233|ref|YP_004457733.1| - 8.3e-07 28.8 0.0 2.6e-06 27.2 0.0 2.0 1 0 0 1 1 1 1 MarR family FeoA PF04023.14 gi|332796233|ref|YP_004457733.1| - 1.1e-06 28.8 0.3 3.1e-06 27.4 0.1 1.8 2 0 0 2 2 2 1 FeoA domain MarR_2 PF12802.7 gi|332796233|ref|YP_004457733.1| - 2.5e-06 27.3 0.0 5.6e-06 26.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|332796233|ref|YP_004457733.1| - 7.4e-06 25.9 0.1 1.7e-05 24.7 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|332796233|ref|YP_004457733.1| - 4.1e-05 23.4 0.1 0.00021 21.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|332796233|ref|YP_004457733.1| - 8.2e-05 22.2 0.1 0.00041 19.9 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|332796233|ref|YP_004457733.1| - 0.0002 21.1 0.7 0.0034 17.1 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) AAA_assoc_C PF09821.9 gi|332796233|ref|YP_004457733.1| - 0.001 19.6 0.1 0.0019 18.7 0.1 1.5 1 0 0 1 1 1 1 C-terminal AAA-associated domain HTH_DeoR PF08220.12 gi|332796233|ref|YP_004457733.1| - 0.0016 18.1 0.0 0.0041 16.8 0.0 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|332796233|ref|YP_004457733.1| - 0.0024 18.3 0.1 0.0066 16.9 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.14 gi|332796233|ref|YP_004457733.1| - 0.0074 16.2 0.2 0.058 13.4 0.2 2.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|332796233|ref|YP_004457733.1| - 0.0075 15.8 0.0 0.023 14.2 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HemN_C PF06969.16 gi|332796233|ref|YP_004457733.1| - 0.016 15.3 0.0 0.036 14.1 0.0 1.6 1 0 0 1 1 1 0 HemN C-terminal domain HTH_Crp_2 PF13545.6 gi|332796233|ref|YP_004457733.1| - 0.019 14.9 0.1 0.096 12.7 0.0 2.1 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_41 PF14502.6 gi|332796233|ref|YP_004457733.1| - 0.02 14.6 0.0 0.052 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|332796233|ref|YP_004457733.1| - 0.024 14.6 0.0 0.062 13.3 0.0 1.7 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.19 gi|332796233|ref|YP_004457733.1| - 0.03 14.2 0.0 0.079 12.9 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|332796233|ref|YP_004457733.1| - 0.07 13.1 0.0 0.14 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rota_NSP4 PF01452.16 gi|332796233|ref|YP_004457733.1| - 0.077 12.7 1.0 0.13 11.9 1.0 1.4 1 0 0 1 1 1 0 Rotavirus non structural protein HTH_11 PF08279.12 gi|332796233|ref|YP_004457733.1| - 0.096 12.6 0.5 0.39 10.7 0.1 2.3 2 0 0 2 2 2 0 HTH domain Ribosomal_S19e PF01090.19 gi|332796233|ref|YP_004457733.1| - 0.1 12.3 0.1 0.2 11.4 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e Ish1 PF10281.9 gi|332796234|ref|YP_004457734.1| - 0.027 14.8 0.0 0.04 14.2 0.0 1.4 1 0 0 1 1 1 0 Putative stress-responsive nuclear envelope protein DUF2835 PF11197.8 gi|332796234|ref|YP_004457734.1| - 0.085 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2835) UPF0180 PF03698.13 gi|332796234|ref|YP_004457734.1| - 0.097 12.9 0.6 0.24 11.6 0.1 1.8 2 1 0 2 2 2 0 Uncharacterised protein family (UPF0180) Rhabdo_ncap PF00945.18 gi|332796235|ref|YP_004457735.1| - 0.12 11.3 0.1 0.14 11.0 0.1 1.1 1 0 0 1 1 1 0 Rhabdovirus nucleocapsid protein DUF456 PF04306.13 gi|332796235|ref|YP_004457735.1| - 0.16 12.3 4.2 0.24 11.7 4.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Methyltransf_11 PF08241.12 gi|332796237|ref|YP_004457737.1| - 1.3e-18 67.4 0.0 2.5e-18 66.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332796237|ref|YP_004457737.1| - 1.4e-13 51.4 0.0 2.3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332796237|ref|YP_004457737.1| - 1.9e-10 41.4 0.0 3.1e-10 40.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|332796237|ref|YP_004457737.1| - 2.9e-09 37.0 0.0 4.3e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332796237|ref|YP_004457737.1| - 7.2e-09 35.6 0.0 1.1e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|332796237|ref|YP_004457737.1| - 2e-05 24.1 0.0 2.7e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family DREV PF05219.12 gi|332796237|ref|YP_004457737.1| - 0.0047 16.1 0.0 0.0062 15.7 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_8 PF05148.15 gi|332796237|ref|YP_004457737.1| - 0.0089 15.9 0.0 0.011 15.7 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase CBS PF00571.28 gi|332796238|ref|YP_004457738.1| - 3.1e-26 91.6 5.0 5.4e-08 33.2 0.0 4.3 4 0 0 4 4 4 3 CBS domain Phosducin PF02114.16 gi|332796238|ref|YP_004457738.1| - 0.071 12.0 0.1 0.11 11.5 0.1 1.3 1 0 0 1 1 1 0 Phosducin MobB PF03205.14 gi|332796239|ref|YP_004457739.1| - 5.3e-19 68.4 0.2 7.8e-19 67.9 0.2 1.3 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_14 PF13173.6 gi|332796239|ref|YP_004457739.1| - 0.025 14.6 0.2 0.051 13.6 0.1 1.5 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|332796239|ref|YP_004457739.1| - 0.073 13.0 2.1 0.12 12.3 2.1 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea MoeA_N PF03453.17 gi|332796240|ref|YP_004457740.1| - 6.6e-38 129.9 0.0 1.1e-37 129.3 0.0 1.3 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|332796240|ref|YP_004457740.1| - 2.8e-15 56.2 0.0 4.5e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain Peptidase_S24 PF00717.23 gi|332796240|ref|YP_004457740.1| - 0.032 14.2 0.2 0.44 10.5 0.1 2.6 2 0 0 2 2 2 0 Peptidase S24-like 7TMR-HDED PF07697.11 gi|332796240|ref|YP_004457740.1| - 0.071 13.2 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 7TM-HD extracellular NTP_transf_3 PF12804.7 gi|332796241|ref|YP_004457741.1| - 7.9e-18 65.3 0.0 1.2e-17 64.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain CofC PF01983.16 gi|332796241|ref|YP_004457741.1| - 0.0054 15.9 0.1 0.0099 15.1 0.1 1.4 1 0 0 1 1 1 1 Guanylyl transferase CofC like DOT1 PF08123.13 gi|332796242|ref|YP_004457742.1| - 2.4e-07 30.5 0.5 3e-06 26.9 0.0 2.0 1 1 0 2 2 2 1 Histone methylation protein DOT1 MetW PF07021.12 gi|332796242|ref|YP_004457742.1| - 0.018 14.6 0.2 0.032 13.8 0.2 1.5 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|332796242|ref|YP_004457742.1| - 0.15 11.9 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Diphthami_syn_2 PF01902.17 gi|332796243|ref|YP_004457743.1| - 1.3e-62 211.2 0.0 1.4e-62 211.1 0.0 1.0 1 0 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|332796243|ref|YP_004457743.1| - 0.013 15.0 0.0 0.044 13.3 0.0 1.8 1 1 0 2 2 2 0 Queuosine biosynthesis protein QueC CutC PF03932.14 gi|332796243|ref|YP_004457743.1| - 0.23 10.9 0.0 0.48 9.9 0.0 1.5 1 1 0 1 1 1 0 CutC family Amidohydro_1 PF01979.20 gi|332796244|ref|YP_004457744.1| - 1.2e-58 199.1 0.0 1.4e-58 198.9 0.0 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|332796244|ref|YP_004457744.1| - 2.8e-16 60.1 0.0 6.2e-11 42.4 0.0 2.2 2 0 0 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|332796244|ref|YP_004457744.1| - 4.1e-06 26.3 0.0 7.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase DNA_mis_repair PF01119.19 gi|332796244|ref|YP_004457744.1| - 0.043 13.5 0.1 6.7 6.4 0.0 2.9 3 0 0 3 3 3 0 DNA mismatch repair protein, C-terminal domain Chlor_dismutase PF06778.12 gi|332796244|ref|YP_004457744.1| - 0.088 12.4 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Chlorite dismutase TrmB PF01978.19 gi|332796245|ref|YP_004457745.1| - 3.2e-14 52.6 0.1 4.7e-14 52.0 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|332796245|ref|YP_004457745.1| - 2.4e-05 24.1 0.0 4e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|332796245|ref|YP_004457745.1| - 3.4e-05 23.6 0.6 7.7e-05 22.5 0.3 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|332796245|ref|YP_004457745.1| - 0.0001 22.1 0.2 0.00013 21.8 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|332796245|ref|YP_004457745.1| - 0.0015 18.4 0.1 0.0025 17.7 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|332796245|ref|YP_004457745.1| - 0.022 14.8 0.2 0.048 13.7 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain z-alpha PF02295.17 gi|332796245|ref|YP_004457745.1| - 0.027 14.5 1.9 0.4 10.8 0.2 2.1 2 0 0 2 2 2 0 Adenosine deaminase z-alpha domain HTH_27 PF13463.6 gi|332796245|ref|YP_004457745.1| - 0.057 13.9 0.1 0.1 13.1 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|332796245|ref|YP_004457745.1| - 0.089 12.5 1.0 0.16 11.6 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HxlR PF01638.17 gi|332796245|ref|YP_004457745.1| - 0.14 12.1 0.0 0.2 11.6 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MazE_antitoxin PF04014.18 gi|332796246|ref|YP_004457746.1| - 1.9e-10 40.4 0.2 2.2e-10 40.2 0.2 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|332796246|ref|YP_004457746.1| - 0.00016 21.4 0.2 0.00019 21.2 0.2 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 PrlF_antitoxin PF15937.5 gi|332796246|ref|YP_004457746.1| - 0.0011 19.3 0.1 0.0012 19.2 0.1 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF4387 PF14330.6 gi|332796246|ref|YP_004457746.1| - 0.051 14.3 0.1 0.051 14.3 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4387) TatD_DNase PF01026.21 gi|332796247|ref|YP_004457747.1| - 3.5e-53 180.6 0.0 3.9e-53 180.4 0.0 1.0 1 0 0 1 1 1 1 TatD related DNase NADH-u_ox-rdase PF10785.9 gi|332796248|ref|YP_004457748.1| - 0.056 14.1 2.6 0.064 14.0 2.6 1.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit COX1 PF00115.20 gi|332796250|ref|YP_004457750.1| - 1.2e-75 255.0 63.0 1.2e-75 255.0 63.0 3.0 1 1 1 3 3 3 3 Cytochrome C and Quinol oxidase polypeptide I Pyr_redox_2 PF07992.14 gi|332796251|ref|YP_004457751.1| - 1.3e-08 34.4 0.0 0.00016 21.0 0.0 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332796251|ref|YP_004457751.1| - 4.5e-05 22.8 0.1 6.6e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Methyltr_RsmB-F PF01189.17 gi|332796253|ref|YP_004457753.1| - 1.4e-29 103.2 0.0 2.7e-29 102.2 0.0 1.5 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|332796253|ref|YP_004457753.1| - 0.026 14.1 0.1 0.045 13.3 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase small domain SusF_SusE PF16411.5 gi|332796253|ref|YP_004457753.1| - 0.089 13.3 0.1 0.12 12.9 0.1 1.3 1 0 0 1 1 1 0 Outer membrane protein SusF_SusE Inhibitor_I69 PF13734.6 gi|332796255|ref|YP_004457755.1| - 0.041 14.3 0.0 0.14 12.6 0.0 1.9 1 1 0 1 1 1 0 Spi protease inhibitor Spc29 PF17082.5 gi|332796256|ref|YP_004457756.1| - 0.061 13.2 0.7 0.089 12.6 0.7 1.1 1 0 0 1 1 1 0 Spindle Pole Component 29 CsgE PF10627.9 gi|332796256|ref|YP_004457756.1| - 0.064 13.5 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 Curli assembly protein CsgE HTH_45 PF14947.6 gi|332796257|ref|YP_004457757.1| - 6.6e-05 22.8 0.0 8.8e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.12 gi|332796257|ref|YP_004457757.1| - 0.00017 20.1 0.1 0.00018 20.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) DUF2250 PF10007.9 gi|332796257|ref|YP_004457757.1| - 0.00057 19.9 0.0 0.31 11.2 0.0 2.2 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) DUF1495 PF07381.11 gi|332796257|ref|YP_004457757.1| - 0.0085 15.9 0.0 0.014 15.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|332796257|ref|YP_004457757.1| - 0.0089 16.1 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 Replication-relaxation DUF4364 PF14277.6 gi|332796257|ref|YP_004457757.1| - 0.011 15.5 0.1 0.012 15.4 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF3116 PF11313.8 gi|332796257|ref|YP_004457757.1| - 0.018 14.9 0.1 0.026 14.4 0.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3116) PadR PF03551.14 gi|332796257|ref|YP_004457757.1| - 0.023 14.7 0.1 0.045 13.7 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|332796257|ref|YP_004457757.1| - 0.029 14.2 0.1 0.04 13.8 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HhH-GPD PF00730.25 gi|332796258|ref|YP_004457758.1| - 3.9e-19 69.1 0.0 7.3e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|332796258|ref|YP_004457758.1| - 1.2e-07 31.3 0.9 8e-07 28.6 0.1 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|332796258|ref|YP_004457758.1| - 0.00043 20.8 1.4 0.0046 17.5 0.2 2.6 1 1 1 2 2 2 1 Helix-hairpin-helix domain HHH_8 PF14716.6 gi|332796258|ref|YP_004457758.1| - 0.025 14.9 0.1 0.11 12.8 0.1 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF2400 PF09674.10 gi|332796258|ref|YP_004457758.1| - 0.038 14.0 0.0 0.43 10.5 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF2400) EndIII_4Fe-2S PF10576.9 gi|332796258|ref|YP_004457758.1| - 0.047 14.0 9.1 0.082 13.3 9.1 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III HHH_2 PF12826.7 gi|332796258|ref|YP_004457758.1| - 0.15 12.1 0.1 1.5 9.0 0.0 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix motif ParBc PF02195.18 gi|332796259|ref|YP_004457759.1| - 1.4e-10 41.3 0.1 1.5e-09 38.0 0.1 2.0 2 0 0 2 2 2 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|332796259|ref|YP_004457759.1| - 0.053 12.4 0.0 4.4 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|332796259|ref|YP_004457759.1| - 0.18 11.8 0.1 0.25 11.4 0.1 1.2 1 0 0 1 1 1 0 Putative ParB-like nuclease Glycos_transf_2 PF00535.26 gi|332796260|ref|YP_004457760.1| - 3e-21 76.0 0.0 4.7e-21 75.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|332796260|ref|YP_004457760.1| - 1.5e-20 73.9 0.1 1.5e-20 73.9 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|332796260|ref|YP_004457760.1| - 7.5e-17 62.0 0.0 9.9e-17 61.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|332796260|ref|YP_004457760.1| - 4.8e-10 39.2 0.0 8.1e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|332796260|ref|YP_004457760.1| - 0.00018 21.1 0.0 0.0004 20.0 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Cellulose_synt PF03552.14 gi|332796260|ref|YP_004457760.1| - 0.00026 19.6 0.1 0.00033 19.3 0.1 1.3 1 0 0 1 1 1 1 Cellulose synthase DEAD_assoc PF08494.11 gi|332796261|ref|YP_004457761.1| - 5.3e-54 182.9 0.0 1.1e-53 181.8 0.0 1.6 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|332796261|ref|YP_004457761.1| - 3e-30 105.3 0.1 1.6e-29 102.9 0.0 2.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332796261|ref|YP_004457761.1| - 4.4e-16 59.2 0.4 1.7e-15 57.3 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332796261|ref|YP_004457761.1| - 7.5e-09 35.8 0.0 2.8e-08 34.0 0.0 2.0 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_Crp_2 PF13545.6 gi|332796261|ref|YP_004457761.1| - 0.0049 16.8 0.2 0.057 13.4 0.1 2.7 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Transketolase_C PF02780.20 gi|332796261|ref|YP_004457761.1| - 0.01 15.7 0.4 0.078 12.9 0.1 2.4 2 0 0 2 2 2 0 Transketolase, C-terminal domain AAA_19 PF13245.6 gi|332796261|ref|YP_004457761.1| - 0.03 14.6 0.0 5.5 7.3 0.0 3.1 2 1 0 2 2 2 0 AAA domain LapD_MoxY_N PF16448.5 gi|332796261|ref|YP_004457761.1| - 0.071 13.0 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 LapD/MoxY periplasmic domain Cucumopine_C PF18631.1 gi|332796261|ref|YP_004457761.1| - 0.095 12.6 0.0 0.36 10.8 0.0 2.0 1 0 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain CCDC92 PF14916.6 gi|332796261|ref|YP_004457761.1| - 0.13 12.0 0.1 0.3 10.9 0.1 1.5 1 0 0 1 1 1 0 Coiled-coil domain of unknown function Prok-JAB PF14464.6 gi|332796262|ref|YP_004457762.1| - 0.00019 21.2 0.0 0.00027 20.7 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain Reovirus_L2 PF06016.11 gi|332796262|ref|YP_004457762.1| - 0.1 9.8 0.0 0.11 9.7 0.0 1.0 1 0 0 1 1 1 0 Reovirus core-spike protein lambda-2 (L2) HrcA_DNA-bdg PF03444.15 gi|332796263|ref|YP_004457763.1| - 1.1e-34 118.0 0.2 3.5e-34 116.3 0.2 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding CBS PF00571.28 gi|332796263|ref|YP_004457763.1| - 1.6e-23 82.9 8.1 1.5e-12 47.7 2.6 2.9 3 0 0 3 3 3 2 CBS domain Rrf2 PF02082.20 gi|332796263|ref|YP_004457763.1| - 3.1e-08 33.9 0.5 1.2e-07 32.0 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator HTH_11 PF08279.12 gi|332796263|ref|YP_004457763.1| - 0.0087 16.0 0.1 0.022 14.7 0.1 1.7 1 0 0 1 1 1 1 HTH domain eIF-1a PF01176.19 gi|332796263|ref|YP_004457763.1| - 0.02 14.7 0.0 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Put_DNA-bind_N PF06971.13 gi|332796263|ref|YP_004457763.1| - 0.031 14.3 0.0 0.061 13.4 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_IclR PF09339.10 gi|332796263|ref|YP_004457763.1| - 0.071 12.9 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|332796263|ref|YP_004457763.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|332796263|ref|YP_004457763.1| - 0.14 12.0 0.3 0.75 9.7 0.0 2.2 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF2192 PF09958.9 gi|332796264|ref|YP_004457764.1| - 3.8e-82 275.2 3.4 4.4e-82 275.1 3.4 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2192) XhlA PF10779.9 gi|332796265|ref|YP_004457765.1| - 8 6.7 9.3 94 3.3 9.3 2.2 1 1 0 1 1 1 0 Haemolysin XhlA HTH_3 PF01381.22 gi|332796266|ref|YP_004457766.1| - 1.4e-07 31.4 0.2 3.1e-07 30.3 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix KORA PF16509.5 gi|332796266|ref|YP_004457766.1| - 0.00081 19.6 0.1 0.0021 18.3 0.1 1.7 1 1 1 2 2 2 1 TrfB plasmid transcriptional repressor HTH_11 PF08279.12 gi|332796266|ref|YP_004457766.1| - 0.0011 18.9 2.0 0.007 16.3 0.1 2.4 2 0 0 2 2 2 1 HTH domain Sigma70_r4_2 PF08281.12 gi|332796266|ref|YP_004457766.1| - 0.0076 15.9 0.2 0.015 14.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_6 PF01418.17 gi|332796266|ref|YP_004457766.1| - 0.009 16.0 0.2 0.073 13.1 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain, rpiR family YdaS_antitoxin PF15943.5 gi|332796266|ref|YP_004457766.1| - 0.01 15.7 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_28 PF13518.6 gi|332796266|ref|YP_004457766.1| - 0.014 15.5 0.0 0.022 14.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain KIX_2 PF16987.5 gi|332796266|ref|YP_004457766.1| - 0.016 15.2 0.4 5.8 7.0 0.1 2.4 2 1 0 2 2 2 0 KIX domain HTH_23 PF13384.6 gi|332796266|ref|YP_004457766.1| - 0.019 14.7 0.0 0.032 14.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|332796266|ref|YP_004457766.1| - 0.029 13.8 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Homeodomain PF00046.29 gi|332796266|ref|YP_004457766.1| - 0.11 12.4 0.2 7.5 6.5 0.0 2.8 2 1 1 3 3 3 0 Homeodomain HTH_Tnp_1 PF01527.20 gi|332796266|ref|YP_004457766.1| - 0.12 12.7 0.1 0.31 11.4 0.1 2.0 1 1 0 1 1 1 0 Transposase IF2_N PF04760.15 gi|332796266|ref|YP_004457766.1| - 0.16 11.8 0.2 0.16 11.8 0.2 2.8 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_24 PF13412.6 gi|332796266|ref|YP_004457766.1| - 0.17 11.5 0.4 0.17 11.5 0.4 2.6 3 2 1 4 4 4 0 Winged helix-turn-helix DNA-binding PNPase PF03726.14 gi|332796266|ref|YP_004457766.1| - 1.2 9.7 5.2 0.68 10.5 0.9 2.0 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain Shikimate_DH PF01488.20 gi|332796267|ref|YP_004457767.1| - 0.046 13.8 0.0 0.1 12.7 0.0 1.7 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Aminotran_1_2 PF00155.21 gi|332796268|ref|YP_004457768.1| - 5.1e-37 127.9 0.0 6.6e-37 127.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|332796268|ref|YP_004457768.1| - 9.5e-11 41.1 0.0 1.3e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Alanine-glyoxylate amino-transferase Beta_elim_lyase PF01212.21 gi|332796268|ref|YP_004457768.1| - 0.23 10.7 0.0 0.34 10.2 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase MoCF_biosynth PF00994.24 gi|332796269|ref|YP_004457769.1| - 1.5e-30 105.7 0.1 2.4e-30 105.1 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain VirArc_Nuclease PF12187.8 gi|332796269|ref|YP_004457769.1| - 0.0024 17.5 0.2 0.0056 16.3 0.1 1.6 2 0 0 2 2 2 1 Viral/Archaeal nuclease Syntaxin_2 PF14523.6 gi|332796269|ref|YP_004457769.1| - 0.014 15.7 0.5 0.014 15.7 0.5 2.4 3 0 0 3 3 3 0 Syntaxin-like protein T4bSS_IcmS PF12608.8 gi|332796269|ref|YP_004457769.1| - 0.18 12.2 0.0 0.38 11.1 0.0 1.5 1 0 0 1 1 1 0 Type IVb secretion, IcmS, effector-recruitment Abhydrolase_1 PF00561.20 gi|332796270|ref|YP_004457770.1| - 1.4e-20 74.0 0.0 2.4e-18 66.7 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|332796270|ref|YP_004457770.1| - 1.4e-15 57.3 0.0 2e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|332796270|ref|YP_004457770.1| - 1.5e-14 55.1 0.0 2e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|332796270|ref|YP_004457770.1| - 2e-05 24.4 0.1 0.0059 16.3 0.0 2.2 1 1 1 2 2 2 2 PGAP1-like protein Thioesterase PF00975.20 gi|332796270|ref|YP_004457770.1| - 0.0076 16.4 0.0 0.011 15.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Ndr PF03096.14 gi|332796270|ref|YP_004457770.1| - 0.019 13.7 0.0 0.023 13.4 0.0 1.5 1 1 0 1 1 1 0 Ndr family Abhydrolase_5 PF12695.7 gi|332796270|ref|YP_004457770.1| - 0.079 12.7 0.0 0.77 9.5 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family tRNA_synthFbeta PF17759.1 gi|332796271|ref|YP_004457771.1| - 2.4e-36 125.2 0.0 3.8e-36 124.6 0.0 1.3 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|332796271|ref|YP_004457771.1| - 1.5e-18 66.8 3.8 2.5e-15 56.5 0.3 2.7 3 0 0 3 3 3 2 tRNA synthetase B5 domain B3_4 PF03483.17 gi|332796271|ref|YP_004457771.1| - 8.2e-15 54.9 1.4 1.9e-14 53.7 0.2 2.1 2 0 0 2 2 2 1 B3/4 domain PhetRS_B1 PF18262.1 gi|332796271|ref|YP_004457771.1| - 0.11 12.7 1.0 0.8 10.0 0.1 2.8 2 1 0 2 2 2 0 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|332796272|ref|YP_004457772.1| - 2.4e-83 279.4 0.0 3.6e-83 278.8 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA_synthFbeta PF17759.1 gi|332796272|ref|YP_004457772.1| - 1.4e-07 31.2 0.0 8.4e-06 25.4 0.0 2.2 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|332796272|ref|YP_004457772.1| - 5.8e-06 25.6 0.2 0.13 11.3 0.0 3.0 2 1 1 3 3 3 2 tRNA synthetases class II (D, K and N) PheRS_DBD3 PF18553.1 gi|332796272|ref|YP_004457772.1| - 0.00037 20.7 0.9 0.029 14.6 0.3 3.2 3 0 0 3 3 3 1 PheRS DNA binding domain 3 DUF3412 PF11892.8 gi|332796272|ref|YP_004457772.1| - 0.057 13.5 0.1 0.41 10.8 0.0 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF3412) HTH_45 PF14947.6 gi|332796272|ref|YP_004457772.1| - 0.086 12.8 2.1 6.1 6.9 0.2 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix TrmB PF01978.19 gi|332796272|ref|YP_004457772.1| - 0.1 12.5 6.3 3.2 7.7 0.7 3.7 4 0 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|332796272|ref|YP_004457772.1| - 5.6 7.1 6.1 11 6.2 0.2 3.3 3 1 0 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B_3 PF13483.6 gi|332796273|ref|YP_004457773.1| - 2.1e-19 70.0 0.1 2.9e-19 69.5 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|332796273|ref|YP_004457773.1| - 2.3e-16 59.9 0.0 2.7e-16 59.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|332796273|ref|YP_004457773.1| - 0.0014 18.7 0.8 0.0045 17.0 0.8 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|332796274|ref|YP_004457774.1| - 2.3e-42 145.0 0.0 2.7e-42 144.8 0.0 1.0 1 0 0 1 1 1 1 Metallopeptidase family M24 DUF4065 PF13274.6 gi|332796274|ref|YP_004457774.1| - 0.0083 17.0 0.0 0.73 10.7 0.0 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4065) GATase_4 PF13230.6 gi|332796274|ref|YP_004457774.1| - 0.047 12.6 0.0 0.11 11.3 0.0 1.6 1 1 1 2 2 2 0 Glutamine amidotransferases class-II DUF1512 PF07431.12 gi|332796275|ref|YP_004457775.1| - 4.7e-150 499.5 12.3 5.4e-150 499.3 12.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1512) Intron_maturas2 PF01348.21 gi|332796275|ref|YP_004457775.1| - 3.9 7.5 6.1 11 6.0 1.7 2.9 2 1 0 3 3 3 0 Type II intron maturase HD PF01966.22 gi|332796277|ref|YP_004457777.1| - 1.2e-10 41.7 0.1 5.7e-10 39.5 0.0 2.2 2 1 0 2 2 2 1 HD domain HDOD PF08668.12 gi|332796277|ref|YP_004457777.1| - 0.017 14.6 0.0 0.32 10.4 0.0 2.3 2 0 0 2 2 2 0 HDOD domain DUF4552 PF15089.6 gi|332796277|ref|YP_004457777.1| - 0.058 12.5 0.1 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4552) SNAD2 PF18745.1 gi|332796277|ref|YP_004457777.1| - 0.15 11.7 0.0 0.25 11.0 0.0 1.3 1 0 0 1 1 1 0 Secreted Novel AID/APOBEC-like Deaminase 2 Hydrolase_3 PF08282.12 gi|332796278|ref|YP_004457778.1| - 7.6e-32 111.0 0.1 3.9e-17 62.8 0.1 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|332796278|ref|YP_004457778.1| - 9.3e-09 35.9 1.5 0.025 14.9 0.0 3.2 2 1 1 3 3 3 3 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|332796278|ref|YP_004457778.1| - 1.7e-07 31.5 1.1 0.00052 20.1 0.0 3.3 2 1 2 4 4 4 2 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|332796278|ref|YP_004457778.1| - 2.8e-07 31.1 1.4 0.029 14.8 0.0 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|332796278|ref|YP_004457778.1| - 5.8e-07 29.3 0.0 1.5e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase_6 PF13344.6 gi|332796278|ref|YP_004457778.1| - 0.0023 18.0 0.0 0.0053 16.9 0.0 1.6 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Trehalose_PPase PF02358.16 gi|332796278|ref|YP_004457778.1| - 0.0083 15.3 0.0 0.91 8.6 0.0 2.1 2 0 0 2 2 2 2 Trehalose-phosphatase tRNA-synt_1c PF00749.21 gi|332796279|ref|YP_004457779.1| - 3.7e-84 282.3 0.1 3.7e-84 282.3 0.1 2.4 3 0 0 3 3 3 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|332796279|ref|YP_004457779.1| - 2.4e-20 73.2 1.1 6.5e-20 71.7 1.1 1.8 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain Ribosomal_L21p PF00829.21 gi|332796279|ref|YP_004457779.1| - 0.032 14.5 2.7 0.1 12.8 2.7 1.8 1 0 0 1 1 1 0 Ribosomal prokaryotic L21 protein GARP PF16731.5 gi|332796279|ref|YP_004457779.1| - 0.049 13.3 1.1 0.1 12.3 0.1 2.0 2 0 0 2 2 2 0 Glutamic acid/alanine-rich protein of Trypanosoma BAH PF01426.18 gi|332796279|ref|YP_004457779.1| - 0.056 13.3 0.4 0.47 10.3 0.2 2.4 2 0 0 2 2 2 0 BAH domain Glyco_hydro38C2 PF17677.1 gi|332796279|ref|YP_004457779.1| - 0.092 12.9 0.2 0.58 10.3 0.1 2.5 2 0 0 2 2 2 0 Glycosyl hydrolases family 38 C-terminal beta sandwich domain eIF-5a PF01287.20 gi|332796279|ref|YP_004457779.1| - 0.26 11.4 1.6 6.9 6.9 0.2 3.2 3 0 0 3 3 3 0 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold Ribosomal_L7Ae PF01248.26 gi|332796280|ref|YP_004457780.1| - 1.7e-33 114.2 1.4 2.1e-33 113.9 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|332796280|ref|YP_004457780.1| - 6.2e-05 22.8 0.0 8.5e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|332796280|ref|YP_004457780.1| - 0.088 13.1 0.2 4.9 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) PGM_PMM_I PF02878.16 gi|332796281|ref|YP_004457781.1| - 2.2e-45 153.7 0.1 4.5e-45 152.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|332796281|ref|YP_004457781.1| - 1e-22 80.7 0.0 2.6e-22 79.4 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|332796281|ref|YP_004457781.1| - 4.3e-18 65.6 0.0 7.8e-18 64.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|332796281|ref|YP_004457781.1| - 1e-12 48.0 0.0 3.5e-12 46.3 0.0 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain DUF2007 PF09413.10 gi|332796281|ref|YP_004457781.1| - 0.055 13.6 0.1 2.4 8.4 0.0 3.2 4 0 0 4 4 4 0 Putative prokaryotic signal transducing protein Trm112p PF03966.16 gi|332796282|ref|YP_004457782.1| - 1.1e-19 70.7 3.4 1.7e-19 70.1 3.4 1.3 1 0 0 1 1 1 1 Trm112p-like protein zf-UDP PF14569.6 gi|332796282|ref|YP_004457782.1| - 0.0013 18.8 0.6 0.0013 18.8 0.6 2.1 1 1 0 2 2 2 1 Zinc-binding RING-finger Cys_rich_KTR PF14205.6 gi|332796282|ref|YP_004457782.1| - 0.018 14.8 1.2 1.4 8.7 0.0 2.6 2 0 0 2 2 2 0 Cysteine-rich KTR zf-RING_7 PF02591.15 gi|332796282|ref|YP_004457782.1| - 0.55 10.5 0.0 0.55 10.5 0.0 2.8 3 0 0 3 3 3 0 C4-type zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|332796282|ref|YP_004457782.1| - 5.7 7.0 12.2 5 7.2 0.2 3.2 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF2153 PF09921.9 gi|332796283|ref|YP_004457783.1| - 3e-51 172.4 6.2 3.6e-51 172.1 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) OMPdecase PF00215.24 gi|332796285|ref|YP_004457785.1| - 1.9e-18 66.9 3.5 2.9e-18 66.3 3.5 1.3 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family HMGL-like PF00682.19 gi|332796285|ref|YP_004457785.1| - 0.00098 18.7 0.9 0.0052 16.4 0.5 1.9 1 1 1 2 2 2 1 HMGL-like QRPTase_C PF01729.19 gi|332796285|ref|YP_004457785.1| - 0.0023 17.8 2.9 0.0065 16.3 1.6 2.2 1 1 1 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain PEP_hydrolase PF09370.10 gi|332796285|ref|YP_004457785.1| - 0.012 14.9 0.1 0.032 13.5 0.0 1.8 1 1 0 2 2 2 0 Phosphoenolpyruvate hydrolase-like CTP_synth_N PF06418.14 gi|332796286|ref|YP_004457786.1| - 5.4e-122 406.2 3.3 7.4e-122 405.8 3.3 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|332796286|ref|YP_004457786.1| - 1.3e-54 184.9 0.0 2.3e-54 184.1 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|332796286|ref|YP_004457786.1| - 3.2e-09 36.9 0.0 1e-08 35.2 0.0 1.9 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|332796286|ref|YP_004457786.1| - 2.7e-05 24.2 0.0 5.2e-05 23.3 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|332796286|ref|YP_004457786.1| - 0.0012 18.1 1.8 0.0045 16.2 0.4 2.0 1 1 1 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|332796286|ref|YP_004457786.1| - 0.035 13.1 0.5 0.081 11.9 0.5 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB YajC PF02699.15 gi|332796286|ref|YP_004457786.1| - 0.035 14.0 0.2 0.99 9.3 0.0 2.6 2 0 0 2 2 2 0 Preprotein translocase subunit ParA PF10609.9 gi|332796286|ref|YP_004457786.1| - 0.21 11.0 1.2 0.71 9.3 0.5 2.1 3 0 0 3 3 3 0 NUBPL iron-transfer P-loop NTPase HTH_5 PF01022.20 gi|332796287|ref|YP_004457787.1| - 1.8e-10 40.5 0.2 3.1e-10 39.7 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332796287|ref|YP_004457787.1| - 1.5e-06 28.2 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|332796287|ref|YP_004457787.1| - 8.7e-06 25.5 0.0 1.2e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|332796287|ref|YP_004457787.1| - 0.00011 22.3 0.1 0.00018 21.6 0.1 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|332796287|ref|YP_004457787.1| - 0.00013 21.8 0.1 0.00021 21.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|332796287|ref|YP_004457787.1| - 0.00031 20.2 0.4 0.00081 18.9 0.4 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|332796287|ref|YP_004457787.1| - 0.00058 19.7 0.2 0.00087 19.1 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|332796287|ref|YP_004457787.1| - 0.0014 19.1 0.0 0.0023 18.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain ArsR PF09824.9 gi|332796287|ref|YP_004457787.1| - 0.002 17.8 0.0 0.0024 17.5 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator DUF742 PF05331.11 gi|332796287|ref|YP_004457787.1| - 0.01 15.6 0.0 0.012 15.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_IclR PF09339.10 gi|332796287|ref|YP_004457787.1| - 0.011 15.5 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|332796287|ref|YP_004457787.1| - 0.015 15.2 0.2 0.024 14.6 0.2 1.4 1 0 0 1 1 1 0 HTH domain HTH_41 PF14502.6 gi|332796287|ref|YP_004457787.1| - 0.027 14.2 0.2 0.046 13.4 0.2 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain LSM PF01423.22 gi|332796288|ref|YP_004457788.1| - 1.5e-20 72.6 0.2 1.8e-20 72.4 0.2 1.1 1 0 0 1 1 1 1 LSM domain DUF1125 PF06563.11 gi|332796288|ref|YP_004457788.1| - 0.031 14.2 0.1 0.055 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1125) AdoMet_Synthase PF01941.19 gi|332796289|ref|YP_004457789.1| - 1e-168 561.2 5.1 1.1e-168 561.1 5.1 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF3194 PF11419.8 gi|332796289|ref|YP_004457789.1| - 0.54 10.6 5.7 0.14 12.6 1.4 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF3194) DUF460 PF04312.13 gi|332796290|ref|YP_004457790.1| - 8.4e-50 168.1 1.6 8.4e-50 168.1 1.6 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) TcdB_N PF12918.7 gi|332796290|ref|YP_004457790.1| - 1.6 9.1 12.0 0.32 11.3 4.0 3.2 2 1 0 2 2 2 0 TcdB toxin N-terminal helical domain Fib_alpha PF08702.10 gi|332796290|ref|YP_004457790.1| - 6 7.0 21.6 0.27 11.4 9.1 3.7 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family ASPRs PF17641.2 gi|332796290|ref|YP_004457790.1| - 7.8 6.8 10.9 99 3.3 10.1 2.9 1 1 0 1 1 1 0 Ancylostoma-associated secreted protein related HIP1_clath_bdg PF16515.5 gi|332796290|ref|YP_004457790.1| - 9 7.0 14.0 0.036 14.7 3.0 2.7 2 1 1 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 RIO1 PF01163.22 gi|332796291|ref|YP_004457791.1| - 4.2e-35 121.1 0.0 6.4e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|332796291|ref|YP_004457791.1| - 4.4e-05 23.6 0.3 0.00011 22.3 0.3 1.7 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|332796291|ref|YP_004457791.1| - 6.5e-05 23.0 0.0 0.012 15.6 0.0 2.2 2 0 0 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|332796291|ref|YP_004457791.1| - 9.9e-05 21.8 0.0 0.00032 20.2 0.0 1.8 1 1 0 1 1 1 1 Protein kinase domain Choline_kinase PF01633.20 gi|332796291|ref|YP_004457791.1| - 0.055 13.0 0.1 1.9 8.0 0.0 2.3 1 1 0 2 2 2 0 Choline/ethanolamine kinase Pkinase_fungal PF17667.1 gi|332796291|ref|YP_004457791.1| - 0.087 11.6 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Fungal protein kinase HTH_34 PF13601.6 gi|332796291|ref|YP_004457791.1| - 0.12 12.5 0.2 0.31 11.3 0.2 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain NFACT-R_1 PF05670.13 gi|332796292|ref|YP_004457792.1| - 2e-25 89.5 0.0 5.8e-25 88.1 0.0 1.8 1 0 0 1 1 1 1 NFACT protein RNA binding domain FbpA PF05833.11 gi|332796292|ref|YP_004457792.1| - 7.9e-24 84.2 32.9 9.5e-13 47.7 5.0 2.1 1 1 1 2 2 2 2 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_2 PF18297.1 gi|332796292|ref|YP_004457792.1| - 1.6e-05 25.0 0.6 7.6e-05 22.8 0.0 2.5 2 0 0 2 2 2 1 NFACT protein RNA binding domain Sec20 PF03908.13 gi|332796292|ref|YP_004457792.1| - 0.0057 16.5 1.2 0.0057 16.5 1.2 3.1 4 0 0 4 4 3 1 Sec20 Tweety PF04906.13 gi|332796292|ref|YP_004457792.1| - 0.069 11.8 6.6 0.43 9.2 6.6 2.0 1 1 0 1 1 1 0 Tweety Exonuc_VII_L PF02601.15 gi|332796292|ref|YP_004457792.1| - 0.26 10.8 5.0 0.48 9.9 5.0 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit DUF357 PF04010.13 gi|332796292|ref|YP_004457792.1| - 0.27 11.3 4.3 3 8.0 0.3 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF357) COG5 PF10392.9 gi|332796292|ref|YP_004457792.1| - 0.3 11.3 4.5 0.89 9.7 1.1 2.5 2 0 0 2 2 2 0 Golgi transport complex subunit 5 IclR PF01614.18 gi|332796292|ref|YP_004457792.1| - 0.73 9.7 3.9 0.63 9.9 1.8 1.9 1 1 1 2 2 2 0 Bacterial transcriptional regulator COG2 PF06148.11 gi|332796292|ref|YP_004457792.1| - 2.9 8.0 16.7 0.65 10.1 5.9 3.6 4 0 0 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Transposase_22 PF02994.14 gi|332796292|ref|YP_004457792.1| - 3.8 7.7 10.9 21 5.4 2.3 3.6 2 1 0 2 2 2 0 L1 transposable element RBD-like domain LMBR1 PF04791.16 gi|332796292|ref|YP_004457792.1| - 6.1 5.6 8.1 9.1 5.1 8.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3347 PF11827.8 gi|332796292|ref|YP_004457792.1| - 6.4 6.9 14.1 15 5.7 14.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) EF-hand_like PF09279.11 gi|332796292|ref|YP_004457792.1| - 6.9 7.2 10.7 1.9 9.0 7.0 1.9 2 0 0 2 2 2 0 Phosphoinositide-specific phospholipase C, efhand-like Syntaxin-6_N PF09177.11 gi|332796292|ref|YP_004457792.1| - 8.7 7.0 19.4 2.2 8.9 6.3 3.6 2 1 1 3 3 3 0 Syntaxin 6, N-terminal MIP-T3_C PF17749.1 gi|332796292|ref|YP_004457792.1| - 9.5 6.2 22.9 2.1 8.3 1.8 3.6 2 1 1 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region SPC12 PF06645.13 gi|332796293|ref|YP_004457793.1| - 0.019 15.1 1.0 0.019 15.1 1.0 1.6 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Peptidase_U4 PF03419.13 gi|332796293|ref|YP_004457793.1| - 1.1 8.5 8.6 1.2 8.3 8.6 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA Mut7-C PF01927.16 gi|332796294|ref|YP_004457794.1| - 2.6e-34 118.4 4.1 1.1e-31 109.9 4.1 2.1 1 1 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|332796294|ref|YP_004457794.1| - 3.5e-05 23.5 0.0 6.1e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) OrfB_Zn_ribbon PF07282.11 gi|332796294|ref|YP_004457794.1| - 0.0024 17.8 0.2 0.0074 16.2 0.2 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain PHD_2 PF13831.6 gi|332796294|ref|YP_004457794.1| - 0.46 10.1 3.4 0.95 9.1 3.4 1.6 1 0 0 1 1 1 0 PHD-finger Rep_fac-A_C PF08646.10 gi|332796294|ref|YP_004457794.1| - 0.86 9.3 5.7 1.1 9.0 5.0 1.5 1 1 0 1 1 1 0 Replication factor-A C terminal domain AMMECR1 PF01871.17 gi|332796295|ref|YP_004457795.1| - 6.8e-50 168.9 0.0 7.9e-50 168.7 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Thioredoxin_3 PF13192.6 gi|332796296|ref|YP_004457796.1| - 1e-26 92.8 4.2 1e-15 57.5 1.4 2.5 2 1 0 2 2 2 2 Thioredoxin domain Thioredoxin PF00085.20 gi|332796296|ref|YP_004457796.1| - 1.1e-05 25.4 1.4 0.0046 16.9 0.5 2.4 2 1 0 2 2 2 2 Thioredoxin Methyltransf_14 PF08484.11 gi|332796296|ref|YP_004457796.1| - 0.0015 18.3 0.0 0.0031 17.4 0.0 1.5 1 0 0 1 1 1 1 C-methyltransferase C-terminal domain Thioredoxin_2 PF13098.6 gi|332796296|ref|YP_004457796.1| - 0.0057 17.1 5.5 4.1 7.9 0.3 3.8 2 2 0 2 2 2 2 Thioredoxin-like domain Glutaredoxin PF00462.24 gi|332796296|ref|YP_004457796.1| - 0.016 15.4 9.1 0.39 11.0 2.3 3.7 2 2 1 3 3 3 0 Glutaredoxin TrbC_Ftype PF09673.10 gi|332796296|ref|YP_004457796.1| - 0.018 15.1 0.6 0.44 10.6 0.2 2.7 2 1 0 2 2 2 0 Type-F conjugative transfer system pilin assembly protein ABC_transp_aux PF09822.9 gi|332796296|ref|YP_004457796.1| - 0.021 14.3 0.0 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 ABC-type uncharacterized transport system Thioredoxin_8 PF13905.6 gi|332796296|ref|YP_004457796.1| - 0.033 14.5 0.7 4.4 7.7 0.0 3.2 2 2 0 2 2 2 0 Thioredoxin-like PDDEXK_1 PF12705.7 gi|332796296|ref|YP_004457796.1| - 0.086 12.7 0.0 2.1 8.2 0.0 2.2 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily FeS_assembly_P PF01883.19 gi|332796296|ref|YP_004457796.1| - 0.099 12.8 0.1 3.8 7.8 0.0 2.3 2 0 0 2 2 2 0 Iron-sulfur cluster assembly protein zf-ribbon_3 PF13248.6 gi|332796296|ref|YP_004457796.1| - 0.43 10.0 0.1 0.43 10.0 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|332796296|ref|YP_004457796.1| - 2.1 8.5 5.7 1.7 8.7 0.1 2.9 2 2 1 3 3 3 0 Thioredoxin Herpes_UL6 PF01763.16 gi|332796297|ref|YP_004457797.1| - 0.0032 16.1 1.4 0.0046 15.6 1.4 1.2 1 0 0 1 1 1 1 Herpesvirus UL6 like DASH_Spc19 PF08287.11 gi|332796297|ref|YP_004457797.1| - 0.0048 16.8 3.2 0.0048 16.8 3.2 1.6 2 0 0 2 2 2 1 Spc19 TSC22 PF01166.18 gi|332796297|ref|YP_004457797.1| - 0.0058 16.9 1.5 0.0058 16.9 1.5 2.0 2 0 0 2 2 1 1 TSC-22/dip/bun family Fzo_mitofusin PF04799.13 gi|332796297|ref|YP_004457797.1| - 0.0071 15.9 0.8 0.016 14.8 0.8 1.5 1 0 0 1 1 1 1 fzo-like conserved region DUF3398 PF11878.8 gi|332796297|ref|YP_004457797.1| - 0.0077 16.6 0.7 0.015 15.7 0.7 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF3398) ZapB PF06005.12 gi|332796297|ref|YP_004457797.1| - 0.021 15.3 5.3 0.021 15.3 5.3 2.5 3 0 0 3 3 2 0 Cell division protein ZapB TMF_DNA_bd PF12329.8 gi|332796297|ref|YP_004457797.1| - 0.024 14.7 5.8 0.024 14.7 5.8 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 DNA binding DUF4407 PF14362.6 gi|332796297|ref|YP_004457797.1| - 0.027 13.9 2.2 0.031 13.6 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) HSBP1 PF06825.12 gi|332796297|ref|YP_004457797.1| - 0.032 14.1 1.7 0.09 12.6 1.3 1.9 1 1 1 2 2 2 0 Heat shock factor binding protein 1 ANT PF03374.14 gi|332796297|ref|YP_004457797.1| - 0.043 14.1 0.2 0.27 11.6 0.1 2.3 1 1 1 2 2 2 0 Phage antirepressor protein KilAC domain Laminin_II PF06009.12 gi|332796297|ref|YP_004457797.1| - 0.045 13.8 4.3 0.38 10.8 1.9 2.4 2 0 0 2 2 2 0 Laminin Domain II Ax_dynein_light PF10211.9 gi|332796297|ref|YP_004457797.1| - 0.16 11.9 8.0 0.075 13.0 5.2 1.9 2 0 0 2 2 2 0 Axonemal dynein light chain Tae4 PF14113.6 gi|332796297|ref|YP_004457797.1| - 0.18 12.1 2.8 0.29 11.4 0.1 2.1 2 0 0 2 2 2 0 Type VI secretion system (T6SS), amidase effector protein 4 YpjP PF14005.6 gi|332796297|ref|YP_004457797.1| - 0.22 11.6 5.1 0.3 11.1 1.4 2.4 2 0 0 2 2 2 0 YpjP-like protein DUF1664 PF07889.12 gi|332796297|ref|YP_004457797.1| - 0.24 11.4 3.0 0.18 11.9 1.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) PIN_6 PF17146.4 gi|332796297|ref|YP_004457797.1| - 0.25 11.8 2.9 6.2 7.4 0.5 2.6 1 1 1 2 2 2 0 PIN domain of ribonuclease Matrilin_ccoil PF10393.9 gi|332796297|ref|YP_004457797.1| - 0.39 10.6 2.2 2.3 8.1 0.6 2.5 1 1 1 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Spc24 PF08286.11 gi|332796297|ref|YP_004457797.1| - 0.5 10.6 6.9 0.4 11.0 4.9 2.0 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 MRF_C1 PF13887.6 gi|332796297|ref|YP_004457797.1| - 0.59 9.3 2.8 10 5.3 0.1 3.0 3 0 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 BLOC1_2 PF10046.9 gi|332796297|ref|YP_004457797.1| - 1.3 9.4 8.7 0.27 11.5 2.5 3.0 2 1 1 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1690 PF07956.11 gi|332796297|ref|YP_004457797.1| - 1.5 9.2 11.8 2.7 8.4 5.6 2.8 2 1 1 3 3 3 0 Protein of Unknown function (DUF1690) PKI PF02827.16 gi|332796297|ref|YP_004457797.1| - 2.4 8.4 5.7 5.8 7.2 2.7 2.8 2 1 1 3 3 3 0 cAMP-dependent protein kinase inhibitor Jnk-SapK_ap_N PF09744.9 gi|332796297|ref|YP_004457797.1| - 2.6 8.3 11.6 0.062 13.5 3.9 2.1 3 0 0 3 3 2 0 JNK_SAPK-associated protein-1 Fib_alpha PF08702.10 gi|332796297|ref|YP_004457797.1| - 2.9 8.1 8.1 1.4 9.1 3.5 2.3 2 1 1 3 3 3 0 Fibrinogen alpha/beta chain family DASH_Dad3 PF08656.10 gi|332796297|ref|YP_004457797.1| - 4.2 7.5 6.9 2.6e+02 1.8 5.5 3.1 2 1 0 2 2 2 0 DASH complex subunit Dad3 CSN5_C PF18323.1 gi|332796297|ref|YP_004457797.1| - 6.1 7.8 9.3 2.4 9.1 3.9 2.6 2 1 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain DUF16 PF01519.16 gi|332796297|ref|YP_004457797.1| - 7.4 7.1 13.7 4.6 7.8 5.7 3.3 1 1 3 4 4 4 0 Protein of unknown function DUF16 dUTPase PF00692.19 gi|332796298|ref|YP_004457798.1| - 2.6e-31 108.0 0.0 3.4e-31 107.6 0.0 1.1 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|332796298|ref|YP_004457798.1| - 2.8e-08 32.9 0.0 7e-08 31.6 0.0 1.7 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DNA_ligase_A_M PF01068.21 gi|332796299|ref|YP_004457799.1| - 1.1e-64 217.9 0.1 1.6e-64 217.3 0.1 1.3 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|332796299|ref|YP_004457799.1| - 3.4e-42 144.7 0.4 6.8e-42 143.7 0.4 1.5 1 0 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|332796299|ref|YP_004457799.1| - 1.2e-25 89.9 0.0 3.6e-25 88.4 0.0 1.8 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region RNA_ligase PF09414.10 gi|332796299|ref|YP_004457799.1| - 0.00023 21.5 0.4 0.00044 20.6 0.4 1.5 1 0 0 1 1 1 1 RNA ligase Lactamase_B_2 PF12706.7 gi|332796300|ref|YP_004457800.1| - 0.00046 19.7 0.0 0.00098 18.7 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DAO PF01266.24 gi|332796301|ref|YP_004457801.1| - 2.2e-46 159.0 0.0 2.5e-46 158.9 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|332796301|ref|YP_004457801.1| - 3.4e-06 26.4 0.8 0.00015 21.0 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|332796301|ref|YP_004457801.1| - 9.8e-06 24.9 0.0 0.06 12.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.6 gi|332796301|ref|YP_004457801.1| - 0.00051 19.4 0.1 0.0066 15.7 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|332796301|ref|YP_004457801.1| - 0.001 18.4 0.2 0.53 9.5 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|332796301|ref|YP_004457801.1| - 0.0024 18.0 0.4 0.0051 17.0 0.4 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|332796301|ref|YP_004457801.1| - 0.0075 15.5 0.1 0.013 14.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|332796301|ref|YP_004457801.1| - 0.017 15.1 0.0 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|332796301|ref|YP_004457801.1| - 0.03 13.4 0.1 2.2 7.2 0.3 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|332796301|ref|YP_004457801.1| - 0.031 13.5 0.9 0.047 12.9 0.9 1.2 1 0 0 1 1 1 0 FAD binding domain PglD_N PF17836.1 gi|332796301|ref|YP_004457801.1| - 0.11 13.1 1.7 3.1 8.5 0.7 2.9 2 0 0 2 2 2 0 PglD N-terminal domain Pyr_redox PF00070.27 gi|332796301|ref|YP_004457801.1| - 0.16 12.6 0.7 0.57 10.8 0.1 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|332796301|ref|YP_004457801.1| - 0.18 11.9 0.0 0.63 10.1 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.14 gi|332796301|ref|YP_004457801.1| - 0.24 10.0 1.0 11 4.6 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein Fer2_BFD PF04324.15 gi|332796302|ref|YP_004457802.1| - 2.9e-09 37.1 0.3 1e-08 35.4 0.3 2.0 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|332796302|ref|YP_004457802.1| - 3e-06 26.7 0.3 7.9e-05 22.0 0.3 2.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase SO_alpha_A3 PF17806.1 gi|332796302|ref|YP_004457802.1| - 3e-05 24.3 0.0 6e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Sarcosine oxidase A3 domain DRTGG PF07085.12 gi|332796302|ref|YP_004457802.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 DRTGG domain Phosphodiest PF01663.22 gi|332796303|ref|YP_004457803.1| - 1.5e-32 113.6 0.4 2.4e-31 109.6 0.4 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|332796303|ref|YP_004457803.1| - 0.00042 20.5 0.0 0.024 14.7 0.0 2.9 2 2 1 3 3 3 1 PglZ domain Sulfatase PF00884.23 gi|332796303|ref|YP_004457803.1| - 0.0022 17.4 0.0 0.05 13.0 0.0 2.5 3 0 0 3 3 3 1 Sulfatase EF-hand_8 PF13833.6 gi|332796303|ref|YP_004457803.1| - 0.1 12.4 0.0 8.8 6.3 0.0 2.9 2 0 0 2 2 2 0 EF-hand domain pair AAA_9 PF12781.7 gi|332796304|ref|YP_004457804.1| - 0.0094 15.1 0.1 0.015 14.5 0.1 1.3 1 0 0 1 1 1 1 ATP-binding dynein motor region Tcp11 PF05794.13 gi|332796304|ref|YP_004457804.1| - 0.061 12.4 0.2 0.08 12.0 0.2 1.2 1 0 0 1 1 1 0 T-complex protein 11 YsaB PF13983.6 gi|332796304|ref|YP_004457804.1| - 0.12 12.6 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 YsaB-like lipoprotein HEM4 PF02602.15 gi|332796305|ref|YP_004457805.1| - 2.9e-22 79.2 0.0 3.5e-22 78.9 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DNA_pol_lambd_f PF10391.9 gi|332796305|ref|YP_004457805.1| - 0.0032 17.3 0.2 0.21 11.4 0.0 2.7 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda Porphobil_deam PF01379.20 gi|332796306|ref|YP_004457806.1| - 5.4e-56 189.3 0.0 6.8e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|332796306|ref|YP_004457806.1| - 1.9e-08 34.5 0.0 4.5e-08 33.4 0.0 1.7 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Abhydrolase_5 PF12695.7 gi|332796306|ref|YP_004457806.1| - 0.055 13.2 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Alpha/beta hydrolase family Aminotran_3 PF00202.21 gi|332796307|ref|YP_004457807.1| - 1.9e-75 254.0 0.0 2.4e-75 253.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Phos_pyr_kin PF08543.12 gi|332796307|ref|YP_004457807.1| - 0.00037 20.0 0.1 0.27 10.6 0.0 2.5 2 0 0 2 2 2 2 Phosphomethylpyrimidine kinase Aminotran_1_2 PF00155.21 gi|332796307|ref|YP_004457807.1| - 0.0032 16.7 0.0 0.0041 16.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Tau95_N PF17682.1 gi|332796307|ref|YP_004457807.1| - 0.064 13.4 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Tau95 Triple barrel domain Aminotran_5 PF00266.19 gi|332796307|ref|YP_004457807.1| - 0.071 12.0 0.1 2.2 7.1 0.0 2.5 2 1 0 2 2 2 0 Aminotransferase class-V ALAD PF00490.21 gi|332796308|ref|YP_004457808.1| - 5e-135 449.7 0.6 5.6e-135 449.6 0.6 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase GlutR_N PF05201.15 gi|332796309|ref|YP_004457809.1| - 9.6e-35 119.5 0.9 1.9e-34 118.5 0.2 1.9 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, N-terminal domain GlutR_dimer PF00745.20 gi|332796309|ref|YP_004457809.1| - 1.9e-18 66.7 3.3 2e-18 66.6 0.9 2.2 1 1 1 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain Shikimate_DH PF01488.20 gi|332796309|ref|YP_004457809.1| - 3.7e-17 62.7 0.3 2.5e-16 60.0 0.1 2.6 1 1 1 2 2 2 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|332796309|ref|YP_004457809.1| - 1.2e-07 32.2 0.0 3.5e-07 30.7 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|332796309|ref|YP_004457809.1| - 3.7e-05 24.0 0.2 0.00059 20.1 0.0 2.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|332796309|ref|YP_004457809.1| - 0.00013 21.4 0.1 0.00027 20.4 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|332796309|ref|YP_004457809.1| - 0.00013 22.2 0.0 0.0004 20.6 0.0 1.8 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.15 gi|332796309|ref|YP_004457809.1| - 0.00024 21.3 0.0 0.001 19.3 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|332796309|ref|YP_004457809.1| - 0.00073 20.4 0.0 0.0017 19.1 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold ApbA PF02558.16 gi|332796309|ref|YP_004457809.1| - 0.0017 18.1 0.0 0.0037 16.9 0.0 1.6 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|332796309|ref|YP_004457809.1| - 0.0019 18.6 0.0 0.0067 16.8 0.0 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.21 gi|332796309|ref|YP_004457809.1| - 0.0058 16.0 0.1 0.014 14.8 0.1 1.6 1 0 0 1 1 1 1 ThiF family NAD_binding_10 PF13460.6 gi|332796309|ref|YP_004457809.1| - 0.0086 16.0 0.0 0.044 13.7 0.0 2.0 2 0 0 2 2 2 1 NAD(P)H-binding Pyr_redox_2 PF07992.14 gi|332796309|ref|YP_004457809.1| - 0.011 14.9 0.0 0.022 14.0 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332796309|ref|YP_004457809.1| - 0.014 15.9 0.2 0.39 11.3 0.0 3.3 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase T4_baseplate PF12322.8 gi|332796309|ref|YP_004457809.1| - 0.015 14.8 3.7 0.037 13.5 3.7 1.6 1 1 0 1 1 1 0 T4 bacteriophage base plate protein FliG_C PF01706.16 gi|332796309|ref|YP_004457809.1| - 0.027 14.7 2.7 0.06 13.5 1.8 2.1 1 1 1 2 2 2 0 FliG C-terminal domain 3HCDH_N PF02737.18 gi|332796309|ref|YP_004457809.1| - 0.035 14.0 1.0 0.13 12.2 0.0 2.4 3 1 1 4 4 4 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|332796309|ref|YP_004457809.1| - 0.049 12.9 0.0 0.12 11.6 0.0 1.7 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Epimerase PF01370.21 gi|332796309|ref|YP_004457809.1| - 0.061 12.8 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Glu_dehyd_C PF16912.5 gi|332796309|ref|YP_004457809.1| - 0.065 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Glucose dehydrogenase C-terminus NAD_Gly3P_dh_N PF01210.23 gi|332796309|ref|YP_004457809.1| - 0.094 12.7 0.5 0.38 10.7 0.0 2.3 2 0 0 2 2 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ELFV_dehydrog PF00208.21 gi|332796309|ref|YP_004457809.1| - 0.34 10.6 2.8 0.22 11.2 0.2 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DUF2115 PF09888.9 gi|332796309|ref|YP_004457809.1| - 3 8.3 7.3 1.2 9.7 4.0 2.0 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2115) NAD_binding_7 PF13241.6 gi|332796310|ref|YP_004457810.1| - 2.5e-25 88.9 0.0 6.5e-25 87.6 0.0 1.6 2 0 0 2 2 2 1 Putative NAD(P)-binding TrkA_N PF02254.18 gi|332796310|ref|YP_004457810.1| - 6.8e-05 23.1 0.6 0.00051 20.3 0.1 2.3 2 1 0 2 2 2 1 TrkA-N domain Shikimate_DH PF01488.20 gi|332796310|ref|YP_004457810.1| - 0.00054 20.0 0.0 0.0011 19.1 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Pyr_redox PF00070.27 gi|332796310|ref|YP_004457810.1| - 0.00076 20.0 0.0 0.0018 18.8 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|332796310|ref|YP_004457810.1| - 0.008 15.6 0.8 0.14 11.5 0.0 2.2 1 1 1 2 2 2 1 ThiF family Pyr_redox_2 PF07992.14 gi|332796310|ref|YP_004457810.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|332796310|ref|YP_004457810.1| - 0.016 15.5 0.0 0.023 15.0 0.0 1.4 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Spermine_synth PF01564.17 gi|332796310|ref|YP_004457810.1| - 0.024 14.1 0.0 0.083 12.3 0.0 1.8 2 0 0 2 2 2 0 Spermine/spermidine synthase domain 2-Hacid_dh_C PF02826.19 gi|332796310|ref|YP_004457810.1| - 0.028 13.8 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|332796310|ref|YP_004457810.1| - 0.073 13.7 0.0 0.15 12.7 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.21 gi|332796310|ref|YP_004457810.1| - 0.2 10.9 0.0 0.38 10.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XPG_I PF00867.18 gi|332796311|ref|YP_004457811.1| - 2.1e-28 98.5 0.2 6.2e-28 97.0 0.0 1.9 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|332796311|ref|YP_004457811.1| - 1.6e-22 79.9 0.0 3.1e-22 79.0 0.0 1.5 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|332796311|ref|YP_004457811.1| - 3.3e-05 24.4 3.2 3.6e-05 24.3 0.0 2.4 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_5 PF14520.6 gi|332796311|ref|YP_004457811.1| - 0.026 15.1 1.1 0.066 13.8 0.1 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain La PF05383.17 gi|332796312|ref|YP_004457812.1| - 0.13 12.4 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 La domain AAA PF00004.29 gi|332796313|ref|YP_004457813.1| - 3.2e-98 325.3 0.0 2.6e-49 167.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|332796313|ref|YP_004457813.1| - 4.6e-36 122.4 7.6 2.2e-17 62.6 0.7 3.7 3 0 0 3 3 3 2 AAA+ lid domain CDC48_N PF02359.18 gi|332796313|ref|YP_004457813.1| - 1e-33 115.3 1.9 2.8e-32 110.7 2.1 2.7 3 0 0 3 3 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|332796313|ref|YP_004457813.1| - 3.6e-16 59.3 0.0 7.3e-08 32.3 0.0 3.0 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|332796313|ref|YP_004457813.1| - 8.9e-16 57.4 1.4 8.9e-16 57.4 1.4 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|332796313|ref|YP_004457813.1| - 5.7e-14 52.8 0.1 8.1e-06 26.3 0.0 4.2 3 2 0 3 3 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|332796313|ref|YP_004457813.1| - 3e-13 50.3 0.0 4.1e-06 27.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|332796313|ref|YP_004457813.1| - 2.6e-12 46.9 1.7 0.00016 21.7 0.1 4.7 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|332796313|ref|YP_004457813.1| - 6.1e-12 46.0 0.9 0.0067 16.7 0.0 4.4 2 2 1 4 4 4 2 AAA domain TIP49 PF06068.13 gi|332796313|ref|YP_004457813.1| - 1.9e-11 43.7 0.0 0.0001 21.7 0.0 2.9 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_33 PF13671.6 gi|332796313|ref|YP_004457813.1| - 5.6e-11 42.8 0.0 0.00025 21.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|332796313|ref|YP_004457813.1| - 1e-09 38.2 4.3 1.1e-05 25.4 0.5 3.2 3 0 0 3 3 2 2 Vps4 C terminal oligomerisation domain AAA_14 PF13173.6 gi|332796313|ref|YP_004457813.1| - 7.4e-09 35.7 0.0 0.0055 16.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_18 PF13238.6 gi|332796313|ref|YP_004457813.1| - 9.4e-09 35.9 0.0 0.0043 17.6 0.0 3.0 3 0 0 3 3 2 2 AAA domain IstB_IS21 PF01695.17 gi|332796313|ref|YP_004457813.1| - 1.6e-08 34.5 0.0 0.004 16.9 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|332796313|ref|YP_004457813.1| - 2.2e-07 30.5 1.1 0.0089 15.4 0.1 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|332796313|ref|YP_004457813.1| - 4e-07 30.4 0.1 0.039 14.2 0.0 2.8 3 0 0 3 3 2 2 AAA domain AAA_24 PF13479.6 gi|332796313|ref|YP_004457813.1| - 1.1e-06 28.5 0.1 0.038 13.7 0.0 2.9 2 1 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|332796313|ref|YP_004457813.1| - 2.9e-06 27.6 0.0 0.068 13.6 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Sigma54_activat PF00158.26 gi|332796313|ref|YP_004457813.1| - 3.1e-06 27.0 0.1 0.1 12.3 0.0 3.5 2 1 0 2 2 2 2 Sigma-54 interaction domain AAA_7 PF12775.7 gi|332796313|ref|YP_004457813.1| - 3.6e-06 26.6 0.1 0.062 12.8 0.0 3.2 3 1 0 3 3 3 2 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|332796313|ref|YP_004457813.1| - 6.7e-06 25.5 0.5 0.13 11.6 0.0 3.3 3 0 0 3 3 3 2 Zeta toxin AAA_25 PF13481.6 gi|332796313|ref|YP_004457813.1| - 8.6e-06 25.5 1.8 0.084 12.4 0.0 3.5 2 1 1 3 3 3 2 AAA domain ATPase PF06745.13 gi|332796313|ref|YP_004457813.1| - 1.6e-05 24.4 0.5 0.42 9.9 0.0 3.6 3 1 0 3 3 3 2 KaiC AAA_3 PF07726.11 gi|332796313|ref|YP_004457813.1| - 2.3e-05 24.3 0.0 0.15 12.0 0.0 3.0 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|332796313|ref|YP_004457813.1| - 2.3e-05 24.4 0.0 0.27 11.2 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE UFD1 PF03152.14 gi|332796313|ref|YP_004457813.1| - 2.5e-05 23.8 0.0 5.3e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 ATPase_2 PF01637.18 gi|332796313|ref|YP_004457813.1| - 4.1e-05 23.6 0.3 0.13 12.2 0.1 3.5 2 2 1 3 3 2 1 ATPase domain predominantly from Archaea PhoH PF02562.16 gi|332796313|ref|YP_004457813.1| - 4.7e-05 22.9 0.4 0.28 10.6 0.0 2.6 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.27 gi|332796313|ref|YP_004457813.1| - 5.8e-05 23.6 0.0 0.27 11.8 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.17 gi|332796313|ref|YP_004457813.1| - 6.1e-05 22.2 0.1 0.13 11.3 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF815 PF05673.13 gi|332796313|ref|YP_004457813.1| - 0.00013 21.3 0.0 0.49 9.5 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF815) NACHT PF05729.12 gi|332796313|ref|YP_004457813.1| - 0.00014 21.8 0.7 0.63 9.9 0.1 3.0 2 1 1 3 3 3 2 NACHT domain AAA_19 PF13245.6 gi|332796313|ref|YP_004457813.1| - 0.0011 19.4 1.4 2.5 8.5 0.2 3.2 3 1 0 3 3 2 2 AAA domain AAA_30 PF13604.6 gi|332796313|ref|YP_004457813.1| - 0.0013 18.5 0.1 2 8.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|332796313|ref|YP_004457813.1| - 0.0014 17.9 0.0 0.73 9.0 0.0 2.8 3 0 0 3 3 3 1 NB-ARC domain Bac_DnaA PF00308.18 gi|332796313|ref|YP_004457813.1| - 0.0015 18.4 0.0 0.3 10.9 0.0 3.0 3 1 0 3 3 2 1 Bacterial dnaA protein AAA_17 PF13207.6 gi|332796313|ref|YP_004457813.1| - 0.0022 18.5 0.0 3.3 8.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|332796313|ref|YP_004457813.1| - 0.003 16.8 0.0 0.46 9.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|332796313|ref|YP_004457813.1| - 0.0031 17.3 0.2 2 8.1 0.0 2.6 3 0 0 3 3 2 1 AAA domain AFG1_ATPase PF03969.16 gi|332796313|ref|YP_004457813.1| - 0.0032 16.4 0.0 2.2 7.1 0.0 2.4 2 0 0 2 2 2 2 AFG1-like ATPase TniB PF05621.11 gi|332796313|ref|YP_004457813.1| - 0.0033 16.9 0.1 2.8 7.3 0.0 3.4 4 0 0 4 4 3 1 Bacterial TniB protein NTPase_1 PF03266.15 gi|332796313|ref|YP_004457813.1| - 0.0055 16.6 2.1 14 5.6 0.0 4.2 3 1 1 4 4 4 0 NTPase ATP-synt_ab PF00006.25 gi|332796313|ref|YP_004457813.1| - 0.0056 16.3 0.0 0.29 10.7 0.0 2.7 2 0 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activ_2 PF14532.6 gi|332796313|ref|YP_004457813.1| - 0.0061 16.7 0.0 3.2 7.9 0.0 2.7 3 0 0 3 3 2 1 Sigma-54 interaction domain Guanylate_kin PF00625.21 gi|332796313|ref|YP_004457813.1| - 0.0072 16.0 0.1 14 5.3 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase IPT PF01745.16 gi|332796313|ref|YP_004457813.1| - 0.0074 15.7 0.1 1.1 8.6 0.0 2.4 2 0 0 2 2 2 1 Isopentenyl transferase Rad17 PF03215.15 gi|332796313|ref|YP_004457813.1| - 0.023 14.6 0.0 5.8 6.8 0.0 3.0 2 1 1 3 3 3 0 Rad17 P-loop domain PduV-EutP PF10662.9 gi|332796313|ref|YP_004457813.1| - 0.026 14.3 0.0 11 5.8 0.0 2.6 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Viral_helicase1 PF01443.18 gi|332796313|ref|YP_004457813.1| - 0.046 13.4 0.0 2.5 7.8 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin PF02224.18 gi|332796313|ref|YP_004457813.1| - 0.048 13.4 0.1 6.4 6.4 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase AAA_29 PF13555.6 gi|332796313|ref|YP_004457813.1| - 0.07 12.9 0.0 15 5.4 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain ResIII PF04851.15 gi|332796313|ref|YP_004457813.1| - 0.12 12.4 0.0 23 5.0 0.0 2.5 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit EF1_GNE PF00736.19 gi|332796314|ref|YP_004457814.1| - 2.5e-18 66.0 0.2 2.7e-18 65.9 0.2 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain KH_7 PF17214.3 gi|332796314|ref|YP_004457814.1| - 0.0034 17.3 0.2 0.0082 16.1 0.2 1.6 1 1 0 1 1 1 1 KH domain DUF1610 PF07754.11 gi|332796315|ref|YP_004457815.1| - 5.3e-17 61.5 9.5 6.6e-14 51.5 4.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.7 gi|332796315|ref|YP_004457815.1| - 4.3e-07 29.8 12.5 3.9e-05 23.6 4.8 2.2 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|332796315|ref|YP_004457815.1| - 6.7e-07 28.8 7.1 0.0063 16.2 0.2 3.2 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332796315|ref|YP_004457815.1| - 1e-05 24.7 8.3 0.026 13.9 0.2 3.2 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796315|ref|YP_004457815.1| - 2.3e-05 24.2 5.0 0.0014 18.5 1.1 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain ADK_lid PF05191.14 gi|332796315|ref|YP_004457815.1| - 7.5e-05 22.6 5.0 0.0016 18.4 1.3 2.4 2 1 0 2 2 2 1 Adenylate kinase, active site lid TF_Zn_Ribbon PF08271.12 gi|332796315|ref|YP_004457815.1| - 0.00011 21.7 9.1 0.01 15.3 5.8 2.7 2 1 0 2 2 2 1 TFIIB zinc-binding DUF35_N PF12172.8 gi|332796315|ref|YP_004457815.1| - 0.00049 19.9 7.9 0.026 14.4 2.0 3.1 2 1 1 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C2HC5 PF06221.13 gi|332796315|ref|YP_004457815.1| - 0.00052 19.9 5.8 0.0024 17.8 1.7 2.1 1 1 1 2 2 2 2 Putative zinc finger motif, C2HC5-type zf_UBZ PF18439.1 gi|332796315|ref|YP_004457815.1| - 0.00081 18.9 4.1 1.8 8.3 0.2 3.2 3 0 0 3 3 3 1 Ubiquitin-Binding Zinc Finger zf-ACC PF17848.1 gi|332796315|ref|YP_004457815.1| - 0.0012 18.9 4.9 1.8 8.7 0.0 3.3 3 0 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain zf-NADH-PPase PF09297.11 gi|332796315|ref|YP_004457815.1| - 0.0013 18.4 1.0 0.0013 18.4 1.0 2.2 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zf-RING_7 PF02591.15 gi|332796315|ref|YP_004457815.1| - 0.0015 18.7 9.5 0.69 10.2 0.2 3.2 3 0 0 3 3 3 2 C4-type zinc ribbon domain zf_C2H2_10 PF18414.1 gi|332796315|ref|YP_004457815.1| - 0.0015 18.0 3.1 0.37 10.4 0.5 2.5 2 0 0 2 2 2 2 C2H2 type zinc-finger C1_2 PF03107.16 gi|332796315|ref|YP_004457815.1| - 0.0016 18.7 4.2 0.31 11.4 0.7 2.1 1 1 1 2 2 2 2 C1 domain zinc_ribbon_4 PF13717.6 gi|332796315|ref|YP_004457815.1| - 0.0033 17.3 5.2 0.015 15.2 2.3 2.6 2 1 1 3 3 3 2 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|332796315|ref|YP_004457815.1| - 0.0048 16.8 11.8 0.19 11.7 5.7 2.9 2 1 0 2 2 2 1 SprT-like zinc ribbon domain Anti-TRAP PF15777.5 gi|332796315|ref|YP_004457815.1| - 0.0057 16.6 4.3 0.077 13.0 0.5 2.1 1 1 1 2 2 2 1 Tryptophan RNA-binding attenuator protein inhibitory protein Nudix_N_2 PF14803.6 gi|332796315|ref|YP_004457815.1| - 0.0087 16.0 9.7 1.7 8.6 0.0 3.6 4 0 0 4 4 3 1 Nudix N-terminal HypA PF01155.19 gi|332796315|ref|YP_004457815.1| - 0.015 15.3 4.3 0.21 11.6 4.3 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LITAF-like PF10601.9 gi|332796315|ref|YP_004457815.1| - 0.017 15.4 7.2 1.8 8.9 0.1 3.0 2 1 1 3 3 3 0 LITAF-like zinc ribbon domain Auto_anti-p27 PF06677.12 gi|332796315|ref|YP_004457815.1| - 0.02 15.0 9.9 0.023 14.8 5.6 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.19 gi|332796315|ref|YP_004457815.1| - 0.028 14.2 7.5 0.4 10.5 0.2 3.0 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger IBR PF01485.21 gi|332796315|ref|YP_004457815.1| - 0.032 14.5 5.3 0.055 13.7 1.3 2.1 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain Sgf11 PF08209.11 gi|332796315|ref|YP_004457815.1| - 0.032 13.8 7.8 3.6 7.2 0.2 3.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) C1_1 PF00130.22 gi|332796315|ref|YP_004457815.1| - 0.034 14.0 0.6 0.034 14.0 0.6 2.0 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 gi|332796315|ref|YP_004457815.1| - 0.053 14.3 0.5 0.053 14.3 0.5 2.4 1 1 1 2 2 2 0 zinc-ribbon family Rubredoxin_2 PF18073.1 gi|332796315|ref|YP_004457815.1| - 0.061 13.1 8.5 3.8 7.3 0.1 3.2 3 0 0 3 3 3 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|332796315|ref|YP_004457815.1| - 0.067 12.9 11.0 2.3 8.0 1.0 3.0 2 1 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc-ribbons_6 PF07191.12 gi|332796315|ref|YP_004457815.1| - 0.071 13.1 3.8 0.45 10.5 3.9 1.8 1 1 0 1 1 1 0 zinc-ribbons zf-Mss51 PF13824.6 gi|332796315|ref|YP_004457815.1| - 0.076 13.1 9.9 0.84 9.8 0.7 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-MYND PF01753.18 gi|332796315|ref|YP_004457815.1| - 0.082 13.0 3.2 0.64 10.2 3.2 2.0 1 1 0 1 1 1 0 MYND finger zf-HIT PF04438.16 gi|332796315|ref|YP_004457815.1| - 0.13 12.1 9.8 0.46 10.4 0.2 3.1 3 1 0 3 3 3 0 HIT zinc finger Spt4 PF06093.13 gi|332796315|ref|YP_004457815.1| - 0.14 12.2 2.7 0.14 12.2 0.9 1.8 1 1 1 2 2 2 0 Spt4/RpoE2 zinc finger YhfH PF14149.6 gi|332796315|ref|YP_004457815.1| - 0.15 12.0 7.3 9.2 6.3 0.0 3.3 3 1 0 3 3 3 0 YhfH-like protein zf-CHY PF05495.12 gi|332796315|ref|YP_004457815.1| - 0.15 12.5 3.5 0.89 10.1 3.5 1.9 1 1 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.10 gi|332796315|ref|YP_004457815.1| - 0.17 12.0 11.3 0.85 9.8 2.8 2.7 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|332796315|ref|YP_004457815.1| - 0.19 12.0 7.7 1 9.6 2.1 2.7 2 1 1 3 3 3 0 zinc-ribbon CK_II_beta PF01214.18 gi|332796315|ref|YP_004457815.1| - 0.29 10.9 1.5 0.25 11.1 0.6 1.4 1 1 0 1 1 1 0 Casein kinase II regulatory subunit PHD PF00628.29 gi|332796315|ref|YP_004457815.1| - 0.35 10.8 6.7 11 6.0 0.3 2.8 2 1 0 2 2 2 0 PHD-finger HscB_4_cys PF18256.1 gi|332796315|ref|YP_004457815.1| - 0.35 10.7 9.1 0.14 12.0 2.4 2.3 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif CoiA PF06054.11 gi|332796315|ref|YP_004457815.1| - 0.36 9.9 0.5 0.42 9.7 0.5 1.1 1 0 0 1 1 1 0 Competence protein CoiA-like family tRNA-synt_1f PF01921.18 gi|332796315|ref|YP_004457815.1| - 0.41 9.5 1.1 0.68 8.8 1.1 1.5 1 1 0 1 1 1 0 tRNA synthetases class I (K) zf-C2H2_3 PF13878.6 gi|332796315|ref|YP_004457815.1| - 0.48 10.3 4.2 10 6.1 0.2 3.1 3 1 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO Rpr2 PF04032.16 gi|332796315|ref|YP_004457815.1| - 0.5 10.7 6.6 69 3.8 6.6 2.9 1 1 0 1 1 1 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1451 PF07295.11 gi|332796315|ref|YP_004457815.1| - 0.51 10.4 1.8 0.98 9.4 0.2 1.9 2 0 0 2 2 2 0 Zinc-ribbon containing domain Acetone_carb_G PF08882.11 gi|332796315|ref|YP_004457815.1| - 0.52 10.5 6.3 3.8 7.7 0.4 2.3 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit NOB1_Zn_bind PF08772.11 gi|332796315|ref|YP_004457815.1| - 0.56 10.4 5.7 0.31 11.2 0.5 2.2 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Zn_Tnp_IS1595 PF12760.7 gi|332796315|ref|YP_004457815.1| - 0.6 10.1 13.5 0.97 9.5 6.4 2.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|332796315|ref|YP_004457815.1| - 0.7 9.7 9.3 2 8.2 0.8 3.4 3 1 0 3 3 3 0 A2L zinc ribbon domain Zn_ribbon_17 PF17120.5 gi|332796315|ref|YP_004457815.1| - 0.76 9.5 7.1 11 5.7 1.5 2.9 1 1 2 3 3 3 0 Zinc-ribbon, C4HC2 type CpXC PF14353.6 gi|332796315|ref|YP_004457815.1| - 0.78 9.8 8.0 4.5 7.4 0.7 2.9 1 1 2 3 3 3 0 CpXC protein RNA_POL_M_15KD PF02150.16 gi|332796315|ref|YP_004457815.1| - 0.97 9.4 8.2 3.4 7.6 4.7 2.7 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit TFIIS_C PF01096.18 gi|332796315|ref|YP_004457815.1| - 1 9.3 6.4 7.8 6.4 0.3 3.0 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-H2C2_2 PF13465.6 gi|332796315|ref|YP_004457815.1| - 1.5 9.4 11.4 3.3 8.3 0.9 3.0 2 1 1 3 3 3 0 Zinc-finger double domain DUF1272 PF06906.11 gi|332796315|ref|YP_004457815.1| - 1.5 9.0 8.2 5.6 7.1 1.7 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF2072 PF09845.9 gi|332796315|ref|YP_004457815.1| - 1.8 8.8 7.2 0.31 11.3 1.2 2.0 1 1 1 2 2 2 0 Zn-ribbon containing protein zf-ISL3 PF14690.6 gi|332796315|ref|YP_004457815.1| - 3.4 8.4 10.2 14 6.5 0.2 3.2 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRDD PF13597.6 gi|332796315|ref|YP_004457815.1| - 5.1 5.8 8.2 3.4 6.3 1.1 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-C2H2 PF00096.26 gi|332796315|ref|YP_004457815.1| - 5.4 7.7 12.2 8.6 7.0 1.1 3.1 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-AN1 PF01428.16 gi|332796315|ref|YP_004457815.1| - 5.5 7.2 8.6 9.2 6.5 1.5 2.7 2 2 1 3 3 3 0 AN1-like Zinc finger zf-TFIIB PF13453.6 gi|332796315|ref|YP_004457815.1| - 6.6 6.2 12.3 8.3 5.8 4.3 2.8 1 1 3 4 4 4 0 Transcription factor zinc-finger PTH2 PF01981.16 gi|332796316|ref|YP_004457816.1| - 4.3e-42 143.1 0.1 4.7e-42 143.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 Cyclin_C PF02984.19 gi|332796316|ref|YP_004457816.1| - 0.02 14.9 0.1 0.028 14.5 0.1 1.1 1 0 0 1 1 1 0 Cyclin, C-terminal domain DUF3211 PF11485.8 gi|332796316|ref|YP_004457816.1| - 0.033 14.4 0.1 0.04 14.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3211) TP_methylase PF00590.20 gi|332796316|ref|YP_004457816.1| - 0.034 14.1 0.1 0.061 13.3 0.0 1.4 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases FAD_binding_4 PF01565.23 gi|332796316|ref|YP_004457816.1| - 0.083 12.6 0.2 0.2 11.4 0.1 1.7 1 1 0 1 1 1 0 FAD binding domain Mei5 PF10376.9 gi|332796316|ref|YP_004457816.1| - 0.12 12.2 0.1 0.15 11.9 0.1 1.1 1 0 0 1 1 1 0 Double-strand recombination repair protein MtaB PF12176.8 gi|332796316|ref|YP_004457816.1| - 0.15 10.8 0.1 0.16 10.7 0.1 1.1 1 0 0 1 1 1 0 Methanol-cobalamin methyltransferase B subunit tRNA-synt_2 PF00152.20 gi|332796317|ref|YP_004457817.1| - 2.1e-90 303.0 0.1 2.5e-90 302.7 0.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|332796317|ref|YP_004457817.1| - 6.5e-16 58.1 0.2 1.2e-15 57.2 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|332796317|ref|YP_004457817.1| - 0.12 11.8 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class II core domain (F) KH_5 PF13184.6 gi|332796318|ref|YP_004457818.1| - 7.2e-05 22.8 0.7 0.00014 21.9 0.3 1.7 2 0 0 2 2 2 1 NusA-like KH domain ATP_Ca_trans_C PF12424.8 gi|332796318|ref|YP_004457818.1| - 0.11 12.9 0.1 0.25 11.9 0.1 1.6 1 0 0 1 1 1 0 Plasma membrane calcium transporter ATPase C terminal Ribosomal_L40e PF01020.17 gi|332796319|ref|YP_004457819.1| - 2.8e-07 30.3 5.8 3.4e-07 30.0 5.8 1.2 1 0 0 1 1 1 1 Ribosomal L40e family DUF35_N PF12172.8 gi|332796319|ref|YP_004457819.1| - 0.00053 19.8 0.7 0.00072 19.4 0.7 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|332796319|ref|YP_004457819.1| - 0.0012 18.8 0.6 0.0014 18.7 0.6 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|332796319|ref|YP_004457819.1| - 0.0023 17.6 1.4 0.0033 17.1 1.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332796319|ref|YP_004457819.1| - 0.0045 16.3 1.2 0.0064 15.9 1.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|332796319|ref|YP_004457819.1| - 0.0084 16.1 0.4 0.009 16.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_13 PF09855.9 gi|332796319|ref|YP_004457819.1| - 0.12 12.6 1.3 2.6 8.3 0.0 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.10 gi|332796319|ref|YP_004457819.1| - 0.17 12.0 2.7 0.76 9.9 2.9 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|332796319|ref|YP_004457819.1| - 0.68 9.7 5.2 1.7 8.5 5.2 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-RRN7 PF11781.8 gi|332796319|ref|YP_004457819.1| - 2.6 7.8 6.9 8.9 6.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2204 PF09970.9 gi|332796320|ref|YP_004457820.1| - 1.6e-57 194.1 6.3 1.8e-57 193.9 6.3 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase of unknown function (DUF2204) Nmad4 PF18756.1 gi|332796320|ref|YP_004457820.1| - 0.1 13.0 0.3 0.21 12.0 0.3 1.5 1 0 0 1 1 1 0 Nucleotide modification associated domain 4 TPP_enzyme_M PF00205.22 gi|332796321|ref|YP_004457821.1| - 9.5e-35 119.3 0.0 7.3e-34 116.4 0.0 2.3 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_N PF02776.18 gi|332796321|ref|YP_004457821.1| - 3.5e-23 82.1 0.0 5.2e-23 81.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PNTB PF02233.16 gi|332796321|ref|YP_004457821.1| - 0.001 18.1 0.1 0.0026 16.8 0.0 1.6 2 0 0 2 2 2 1 NAD(P) transhydrogenase beta subunit DrsE PF02635.15 gi|332796322|ref|YP_004457822.1| - 9.2e-10 38.9 0.1 1e-09 38.8 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|332796322|ref|YP_004457822.1| - 8.8e-05 22.5 0.2 9.6e-05 22.3 0.2 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family SinI PF08671.10 gi|332796322|ref|YP_004457822.1| - 0.19 11.6 0.3 16 5.4 0.2 2.4 2 0 0 2 2 2 0 Anti-repressor SinI KH_7 PF17214.3 gi|332796323|ref|YP_004457823.1| - 2.6e-23 81.8 11.7 3.8e-22 78.0 0.4 3.2 4 0 0 4 4 4 2 KH domain Beta-Casp PF10996.8 gi|332796323|ref|YP_004457823.1| - 4e-22 78.6 0.0 9.8e-22 77.3 0.0 1.7 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|332796323|ref|YP_004457823.1| - 1e-16 60.6 0.0 2.6e-16 59.3 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|332796323|ref|YP_004457823.1| - 6.7e-14 52.3 0.6 4.8e-13 49.6 0.6 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|332796323|ref|YP_004457823.1| - 3.7e-13 49.3 0.0 1.1e-12 47.8 0.0 1.7 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|332796323|ref|YP_004457823.1| - 2.2e-12 46.9 0.1 4e-12 46.1 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|332796323|ref|YP_004457823.1| - 0.00032 20.6 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|332796323|ref|YP_004457823.1| - 0.032 14.0 0.9 0.032 14.0 0.9 3.5 3 1 1 4 4 4 0 KH domain KH_4 PF13083.6 gi|332796323|ref|YP_004457823.1| - 0.66 9.9 3.9 0.86 9.5 0.8 2.5 2 1 0 2 2 2 0 KH domain Fe-ADH_2 PF13685.6 gi|332796324|ref|YP_004457824.1| - 5.2e-65 219.6 0.0 6.4e-65 219.3 0.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|332796324|ref|YP_004457824.1| - 8.2e-25 87.4 0.2 3.7e-24 85.2 0.2 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|332796324|ref|YP_004457824.1| - 1.9e-08 33.8 0.1 3.4e-07 29.7 0.1 2.5 1 1 0 1 1 1 1 3-dehydroquinate synthase FKBP_C PF00254.28 gi|332796325|ref|YP_004457825.1| - 1.1e-14 54.5 0.1 3.8e-14 52.8 0.1 1.9 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase FKBP26_C PF18046.1 gi|332796325|ref|YP_004457825.1| - 9.7e-10 38.4 1.1 2e-09 37.4 1.1 1.6 1 0 0 1 1 1 1 FKBP26_C-terminal AdoHcyase PF05221.17 gi|332796326|ref|YP_004457826.1| - 7.3e-77 258.4 0.0 3.8e-46 157.6 0.0 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|332796326|ref|YP_004457826.1| - 3.4e-56 189.8 1.8 3.7e-56 189.7 0.8 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|332796326|ref|YP_004457826.1| - 3.6e-09 36.2 0.3 9.1e-09 34.9 0.3 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|332796326|ref|YP_004457826.1| - 8.7e-07 28.6 2.6 1.1e-06 28.3 0.4 2.2 3 0 0 3 3 3 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|332796326|ref|YP_004457826.1| - 0.00021 21.5 0.3 0.0009 19.5 0.0 2.1 2 0 0 2 2 2 1 TrkA-N domain THF_DHG_CYH_C PF02882.19 gi|332796326|ref|YP_004457826.1| - 0.00051 19.4 1.8 0.0045 16.3 1.8 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Pyr_redox_2 PF07992.14 gi|332796326|ref|YP_004457826.1| - 0.014 14.6 0.1 0.025 13.8 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Hydrolase PF00702.26 gi|332796326|ref|YP_004457826.1| - 0.02 15.2 0.4 0.089 13.1 0.1 2.1 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase 3HCDH_N PF02737.18 gi|332796326|ref|YP_004457826.1| - 0.029 14.3 0.7 0.093 12.6 0.7 1.9 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|332796326|ref|YP_004457826.1| - 0.072 13.7 0.7 0.31 11.6 0.7 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DUF3447 PF11929.8 gi|332796326|ref|YP_004457826.1| - 0.079 12.9 0.0 0.22 11.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3447) F420_oxidored PF03807.17 gi|332796326|ref|YP_004457826.1| - 0.1 13.2 0.9 0.27 11.8 0.2 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|332796326|ref|YP_004457826.1| - 0.11 12.9 0.9 1.9 9.0 0.4 2.5 2 1 0 2 2 2 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|332796326|ref|YP_004457826.1| - 1.7 7.9 7.4 8.3 5.6 4.6 2.6 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Retrotran_gag_2 PF14223.6 gi|332796327|ref|YP_004457827.1| - 0.013 15.2 0.2 0.019 14.6 0.2 1.3 1 0 0 1 1 1 0 gag-polypeptide of LTR copia-type RdDM_RDM1 PF09187.10 gi|332796327|ref|YP_004457827.1| - 0.046 13.8 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA-directed DNA methylation 1 PX PF00787.24 gi|332796327|ref|YP_004457827.1| - 0.072 13.1 0.1 0.11 12.5 0.1 1.3 1 0 0 1 1 1 0 PX domain DUF1464 PF07318.12 gi|332796328|ref|YP_004457828.1| - 3.3e-100 335.4 0.2 4.5e-100 335.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1464) NTP_transf_2 PF01909.23 gi|332796329|ref|YP_004457829.1| - 4.7e-06 26.8 0.2 1e-05 25.7 0.2 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332796329|ref|YP_004457829.1| - 0.0055 16.8 0.2 0.017 15.2 0.0 2.0 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase CitG PF01874.16 gi|332796330|ref|YP_004457830.1| - 6.4e-40 137.6 0.0 7.3e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase alpha-hel2 PF14456.6 gi|332796330|ref|YP_004457830.1| - 0.17 11.2 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 Alpha-helical domain 2 Metallophos_2 PF12850.7 gi|332796331|ref|YP_004457831.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase superfamily domain Acetyltransf_1 PF00583.25 gi|332796332|ref|YP_004457832.1| - 1.9e-19 70.0 0.0 2.5e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|332796332|ref|YP_004457832.1| - 4.3e-14 52.7 0.1 6.4e-14 52.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|332796332|ref|YP_004457832.1| - 3.5e-12 46.4 0.1 6.6e-12 45.5 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|332796332|ref|YP_004457832.1| - 5e-09 36.0 0.1 7.4e-09 35.5 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|332796332|ref|YP_004457832.1| - 2.3e-07 30.6 0.0 4.3e-07 29.7 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|332796332|ref|YP_004457832.1| - 2.7e-06 27.5 0.1 1e-05 25.6 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|332796332|ref|YP_004457832.1| - 4.9e-06 27.3 0.0 7.2e-06 26.7 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|332796332|ref|YP_004457832.1| - 4.7e-05 23.6 0.2 0.00016 21.8 0.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|332796332|ref|YP_004457832.1| - 0.0015 18.0 0.3 0.0024 17.4 0.3 1.4 1 1 0 1 1 1 1 Putative acetyl-transferase DUF4821 PF16092.5 gi|332796332|ref|YP_004457832.1| - 0.0017 18.0 0.0 0.003 17.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4821) DFP PF04127.15 gi|332796333|ref|YP_004457833.1| - 9e-56 188.6 0.1 2.3e-54 184.0 0.1 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|332796333|ref|YP_004457833.1| - 1.4e-34 119.1 0.9 2.8e-34 118.2 0.9 1.5 1 0 0 1 1 1 1 Flavoprotein ACT_4 PF13291.6 gi|332796333|ref|YP_004457833.1| - 0.005 17.4 1.0 0.65 10.6 0.7 2.6 2 0 0 2 2 2 1 ACT domain FlpD PF02662.16 gi|332796333|ref|YP_004457833.1| - 0.017 15.1 0.0 0.11 12.5 0.0 2.1 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit SSV1_ORF_D-335 PF07935.11 gi|332796334|ref|YP_004457834.1| - 1.1e-11 44.8 0.7 1.3e-11 44.6 0.7 1.1 1 0 0 1 1 1 1 ORF D-335-like protein Glycos_transf_4 PF00953.21 gi|332796335|ref|YP_004457835.1| - 1.1e-31 110.0 19.2 1.1e-31 110.0 19.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 4 polyprenyl_synt PF00348.17 gi|332796336|ref|YP_004457836.1| - 3.4e-75 252.4 0.1 4.4e-75 252.0 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Qua1 PF16274.5 gi|332796336|ref|YP_004457836.1| - 1.7 8.6 4.9 3.9 7.4 0.5 2.8 2 0 0 2 2 2 0 Qua1 domain FMN_dh PF01070.18 gi|332796337|ref|YP_004457837.1| - 1.4e-19 70.3 0.7 1.9e-17 63.3 0.7 2.1 1 1 0 1 1 1 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|332796337|ref|YP_004457837.1| - 3.5e-07 29.6 3.2 0.0025 16.9 0.9 3.4 2 1 1 3 3 3 3 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|332796337|ref|YP_004457837.1| - 0.01 15.0 0.4 0.017 14.3 0.1 1.7 2 0 0 2 2 2 0 Conserved region in glutamate synthase AA_kinase PF00696.28 gi|332796338|ref|YP_004457838.1| - 2.3e-26 92.9 0.0 4e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Amino acid kinase family Memo PF01875.17 gi|332796340|ref|YP_004457840.1| - 3.3e-89 298.6 0.1 3.8e-89 298.4 0.1 1.0 1 0 0 1 1 1 1 Memo-like protein Glyco_trans_4_2 PF13477.6 gi|332796340|ref|YP_004457840.1| - 0.052 13.6 0.1 2.1 8.4 0.0 2.5 2 0 0 2 2 2 0 Glycosyl transferase 4-like Ribosomal_S2 PF00318.20 gi|332796341|ref|YP_004457841.1| - 6.2e-28 97.5 0.0 8.6e-15 54.6 0.0 2.2 1 1 1 2 2 2 2 Ribosomal protein S2 Peripla_BP_4 PF13407.6 gi|332796341|ref|YP_004457841.1| - 0.031 13.8 0.1 0.046 13.3 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein domain RNA_pol_N PF01194.17 gi|332796342|ref|YP_004457842.1| - 3.7e-31 107.2 0.4 4.1e-31 107.1 0.4 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|332796343|ref|YP_004457843.1| - 3.2e-26 92.2 0.1 3.6e-26 92.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 TPR_7 PF13176.6 gi|332796343|ref|YP_004457843.1| - 0.1 12.7 0.3 0.2 11.8 0.1 1.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Ribosomal_L13 PF00572.18 gi|332796344|ref|YP_004457844.1| - 4.3e-12 46.4 0.6 3.8e-10 40.1 0.6 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 PH_2 PF08458.10 gi|332796344|ref|YP_004457844.1| - 0.031 14.6 0.2 4.3 7.7 0.1 2.2 2 0 0 2 2 2 0 Plant pleckstrin homology-like region IF2_N PF04760.15 gi|332796344|ref|YP_004457844.1| - 0.14 12.0 0.1 0.35 10.7 0.0 1.7 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Ribosomal_L18 PF17135.4 gi|332796345|ref|YP_004457845.1| - 2.5e-09 36.8 0.0 2.9e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|332796345|ref|YP_004457845.1| - 1.7e-08 35.2 0.4 2.4e-08 34.7 0.4 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|332796346|ref|YP_004457846.1| - 3.8e-29 101.3 0.0 7e-29 100.5 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|332796346|ref|YP_004457846.1| - 1.8e-13 49.7 0.0 2.7e-13 49.2 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Fer4_9 PF13187.6 gi|332796346|ref|YP_004457846.1| - 0.0036 17.4 10.1 0.014 15.5 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332796346|ref|YP_004457846.1| - 0.15 12.2 9.2 0.59 10.3 1.5 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain DUF1450 PF07293.11 gi|332796346|ref|YP_004457846.1| - 0.91 9.4 12.0 0.22 11.3 4.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1450) Fer4_7 PF12838.7 gi|332796346|ref|YP_004457846.1| - 1.1 9.9 8.5 26 5.5 1.8 3.0 1 1 3 4 4 4 0 4Fe-4S dicluster domain Ribosomal_S11 PF00411.19 gi|332796347|ref|YP_004457847.1| - 4.5e-48 162.2 2.2 5.8e-48 161.9 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.25 gi|332796348|ref|YP_004457848.1| - 1.6e-16 59.7 0.1 3.9e-16 58.5 0.1 1.7 1 0 0 1 1 1 1 S4 domain Ribosomal_S4 PF00163.19 gi|332796348|ref|YP_004457848.1| - 0.00089 20.1 0.5 0.0044 17.9 0.2 2.1 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain TyrRSs_C PF16714.5 gi|332796348|ref|YP_004457848.1| - 0.043 13.6 0.1 0.28 11.0 0.0 2.0 1 1 1 2 2 2 0 Tyrosyl-tRNA synthetase C-terminal domain Ribosomal_S13 PF00416.22 gi|332796349|ref|YP_004457849.1| - 2.5e-47 160.5 0.4 2.9e-47 160.2 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 HHH_4 PF14490.6 gi|332796349|ref|YP_004457849.1| - 0.00039 20.3 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix containing domain FbpA PF05833.11 gi|332796349|ref|YP_004457849.1| - 0.0025 16.7 0.0 0.0029 16.5 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.6 gi|332796349|ref|YP_004457849.1| - 0.005 17.4 0.3 0.011 16.3 0.3 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain AIRS_C PF02769.22 gi|332796350|ref|YP_004457850.1| - 6.6e-10 39.3 0.0 1.2e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|332796350|ref|YP_004457850.1| - 2.5e-06 28.1 0.2 5.3e-06 27.0 0.2 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain UPF0047 PF01894.17 gi|332796351|ref|YP_004457851.1| - 1.4e-36 125.1 0.0 1.7e-36 124.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 tRNA-synt_1b PF00579.25 gi|332796353|ref|YP_004457853.1| - 1.1e-50 172.7 1.5 5.5e-36 124.4 0.1 2.0 1 1 1 2 2 2 2 tRNA synthetases class I (W and Y) Toprim_4 PF13662.6 gi|332796354|ref|YP_004457854.1| - 2.7e-10 40.6 0.1 8.4e-10 39.0 0.1 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|332796354|ref|YP_004457854.1| - 7.5e-05 23.1 0.0 0.00062 20.2 0.0 2.3 2 1 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|332796354|ref|YP_004457854.1| - 0.0021 18.2 1.0 0.025 14.8 0.0 2.7 2 0 0 2 2 2 1 Toprim domain Sec3_C_2 PF15278.6 gi|332796354|ref|YP_004457854.1| - 0.016 15.6 0.0 4.4 7.7 0.0 3.0 3 0 0 3 3 3 0 Sec3 exocyst complex subunit LRRC37 PF15779.5 gi|332796354|ref|YP_004457854.1| - 0.027 14.8 2.5 0.05 14.0 2.5 1.3 1 0 0 1 1 1 0 Leucine-rich repeat-containing protein 37 family Pro_sub2 PF18513.1 gi|332796354|ref|YP_004457854.1| - 0.033 14.4 0.1 0.074 13.2 0.1 1.5 1 0 0 1 1 1 0 Prodomain subtilisin 2 DNA_pol_B PF00136.21 gi|332796355|ref|YP_004457855.1| - 4e-76 256.6 0.0 7.4e-76 255.7 0.0 1.4 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|332796355|ref|YP_004457855.1| - 4.1e-48 164.3 2.9 4.4e-46 157.6 2.9 2.3 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|332796355|ref|YP_004457855.1| - 4.6e-10 39.7 0.0 1.1e-09 38.4 0.0 1.7 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|332796355|ref|YP_004457855.1| - 5.6e-07 29.4 0.1 1e-06 28.6 0.1 1.3 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DNA_pol_B_2 PF03175.13 gi|332796355|ref|YP_004457855.1| - 0.00069 18.6 0.1 0.0013 17.6 0.1 1.5 1 0 0 1 1 1 1 DNA polymerase type B, organellar and viral SCAPER_N PF16501.5 gi|332796355|ref|YP_004457855.1| - 0.11 12.5 0.3 0.61 10.1 0.1 2.3 2 0 0 2 2 2 0 S phase cyclin A-associated protein in the endoplasmic reticulum Acetyltransf_1 PF00583.25 gi|332796356|ref|YP_004457856.1| - 4.9e-18 65.5 0.2 8.6e-18 64.7 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|332796356|ref|YP_004457856.1| - 1.6e-11 44.2 0.2 2.5e-11 43.6 0.2 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|332796356|ref|YP_004457856.1| - 8e-11 42.2 1.2 8e-11 42.2 1.2 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|332796356|ref|YP_004457856.1| - 0.00012 22.2 1.8 0.00024 21.3 1.8 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|332796356|ref|YP_004457856.1| - 0.0013 18.5 0.0 0.0018 18.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ FR47 PF08445.10 gi|332796356|ref|YP_004457856.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein NMT PF01233.19 gi|332796356|ref|YP_004457856.1| - 0.0076 16.1 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain GNAT_acetyltr_2 PF13718.6 gi|332796356|ref|YP_004457856.1| - 0.11 11.9 0.1 4.3 6.7 0.0 2.1 1 1 1 2 2 2 0 GNAT acetyltransferase 2 eRF1_1 PF03463.15 gi|332796357|ref|YP_004457857.1| - 2.5e-23 82.5 1.4 5.2e-23 81.5 1.4 1.6 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|332796357|ref|YP_004457857.1| - 1e-21 77.5 1.1 3.4e-21 75.8 0.1 2.4 2 1 0 2 2 2 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|332796357|ref|YP_004457857.1| - 7.8e-05 23.0 0.1 0.00022 21.6 0.0 1.8 2 0 0 2 2 2 1 eRF1 domain 2 baeRF_family2 PF18844.1 gi|332796357|ref|YP_004457857.1| - 0.02 14.9 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 Arg_tRNA_synt_N PF03485.16 gi|332796357|ref|YP_004457857.1| - 0.072 13.7 0.0 0.19 12.3 0.0 1.7 1 0 0 1 1 1 0 Arginyl tRNA synthetase N terminal domain DAHP_snth_FXD PF18152.1 gi|332796357|ref|YP_004457857.1| - 0.22 11.4 2.8 2.4 8.0 0.2 3.0 2 0 0 2 2 2 0 DAHP synthase ferredoxin-like domain Radical_SAM PF04055.21 gi|332796358|ref|YP_004457858.1| - 2.4e-09 37.8 1.1 5.6e-07 30.1 0.1 3.7 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|332796358|ref|YP_004457858.1| - 5.1e-08 33.1 0.0 1.3e-07 31.8 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain DUF4180 PF13788.6 gi|332796358|ref|YP_004457858.1| - 0.11 12.5 0.0 7.3 6.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4180) DUF1122 PF06557.11 gi|332796359|ref|YP_004457859.1| - 8.5e-66 220.7 2.4 1e-65 220.5 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1122) Toprim_Crpt PF13342.6 gi|332796359|ref|YP_004457859.1| - 0.44 10.6 2.6 2.5 8.1 0.1 2.6 3 0 0 3 3 3 0 C-terminal repeat of topoisomerase NTP_transf_2 PF01909.23 gi|332796360|ref|YP_004457860.1| - 6.4e-09 36.0 0.1 1.3e-08 35.0 0.1 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332796360|ref|YP_004457860.1| - 1.3e-05 25.2 0.1 3.9e-05 23.7 0.0 1.8 2 0 0 2 2 2 1 Polymerase beta, Nucleotidyltransferase RalF_SCD PF18248.1 gi|332796360|ref|YP_004457860.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 RalF C-terminal Sec-7 capping domain Peptidase_M50 PF02163.22 gi|332796361|ref|YP_004457861.1| - 4.7e-22 78.5 7.0 7.4e-22 77.8 7.0 1.3 1 0 0 1 1 1 1 Peptidase family M50 PDZ_6 PF17820.1 gi|332796361|ref|YP_004457861.1| - 1.1e-08 34.7 0.1 3.3e-08 33.3 0.0 1.8 2 0 0 2 2 2 1 PDZ domain PDZ PF00595.24 gi|332796361|ref|YP_004457861.1| - 7.3e-07 29.5 0.0 1.5e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ_2 PF13180.6 gi|332796361|ref|YP_004457861.1| - 2.5e-05 24.5 0.0 6.6e-05 23.2 0.0 1.7 2 0 0 2 2 2 1 PDZ domain PDZ_3 PF17815.1 gi|332796361|ref|YP_004457861.1| - 0.073 12.9 1.0 1.5 8.7 0.0 2.8 3 0 0 3 3 3 0 PDZ domain Tricorn_PDZ PF14685.6 gi|332796361|ref|YP_004457861.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Tricorn protease PDZ domain tRNA-synt_2 PF00152.20 gi|332796362|ref|YP_004457862.1| - 1.2e-84 284.1 0.2 1.5e-84 283.8 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|332796362|ref|YP_004457862.1| - 1.6e-12 47.3 0.2 7.6e-12 45.1 0.1 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|332796362|ref|YP_004457862.1| - 1e-09 38.3 0.4 1.6e-06 27.8 0.2 3.0 3 0 0 3 3 3 2 tRNA synthetases class II core domain (F) LEM PF03020.15 gi|332796362|ref|YP_004457862.1| - 0.0018 17.8 0.1 0.0078 15.7 0.1 2.1 2 0 0 2 2 2 1 LEM domain SAP PF02037.27 gi|332796362|ref|YP_004457862.1| - 0.0078 15.9 0.3 0.032 14.0 0.0 2.3 2 0 0 2 2 2 1 SAP domain DUF131 PF01998.17 gi|332796364|ref|YP_004457864.1| - 3e-07 30.0 10.3 3e-07 30.0 10.3 1.6 1 1 1 2 2 2 1 Protein of unknown function DUF131 DUF2207 PF09972.9 gi|332796364|ref|YP_004457864.1| - 0.023 13.5 9.2 0.029 13.1 9.2 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OAD_gamma PF04277.13 gi|332796364|ref|YP_004457864.1| - 0.46 11.1 7.6 0.79 10.4 0.9 2.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Tetraspanin PF00335.20 gi|332796364|ref|YP_004457864.1| - 0.49 10.1 6.5 0.67 9.6 6.5 1.2 1 0 0 1 1 1 0 Tetraspanin family DUF202 PF02656.15 gi|332796364|ref|YP_004457864.1| - 1.8 9.1 11.5 16 6.0 11.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2070 PF09843.9 gi|332796364|ref|YP_004457864.1| - 2.7 6.2 7.3 2.9 6.1 7.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_holin_3_6 PF07332.11 gi|332796364|ref|YP_004457864.1| - 3.2 7.8 7.2 5.8 7.0 7.2 1.4 1 1 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2606 PF10794.9 gi|332796365|ref|YP_004457865.1| - 0.034 13.9 0.0 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2606) TFIIB PF00382.19 gi|332796366|ref|YP_004457866.1| - 5.2e-34 116.1 4.3 1.1e-16 60.7 0.3 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|332796366|ref|YP_004457866.1| - 1.2e-11 43.9 0.2 2.2e-11 43.1 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_AsnC-type PF13404.6 gi|332796366|ref|YP_004457866.1| - 1.6e-07 31.0 0.2 7.7e-06 25.6 0.1 2.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|332796366|ref|YP_004457866.1| - 1.9e-05 24.1 3.8 0.00012 21.5 0.2 3.5 4 0 0 4 4 4 1 Sigma-70, region 4 Cyclin_C PF02984.19 gi|332796366|ref|YP_004457866.1| - 0.00021 21.4 0.1 0.34 11.0 0.0 2.2 2 0 0 2 2 2 2 Cyclin, C-terminal domain DUF3562 PF12085.8 gi|332796366|ref|YP_004457866.1| - 0.00062 19.3 0.8 0.77 9.4 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3562) Sigma70_r4_2 PF08281.12 gi|332796366|ref|YP_004457866.1| - 0.00064 19.3 0.1 0.0097 15.6 0.0 2.7 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|332796366|ref|YP_004457866.1| - 0.001 18.6 0.0 0.0042 16.6 0.0 2.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|332796366|ref|YP_004457866.1| - 0.0035 17.3 0.2 0.84 9.7 0.0 3.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|332796366|ref|YP_004457866.1| - 0.0062 15.9 0.2 0.19 11.2 0.1 2.8 2 1 1 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_11 PF08279.12 gi|332796366|ref|YP_004457866.1| - 0.009 15.9 0.3 0.027 14.4 0.3 1.8 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|332796366|ref|YP_004457866.1| - 0.036 13.9 0.1 0.036 13.9 0.1 3.3 3 0 0 3 3 3 0 Homeodomain-like domain HU-CCDC81_euk_2 PF18289.1 gi|332796366|ref|YP_004457866.1| - 0.037 14.2 0.3 3.5 7.8 0.0 2.4 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 Cyclin_N PF00134.23 gi|332796366|ref|YP_004457866.1| - 0.13 12.0 0.1 8 6.2 0.0 2.2 2 0 0 2 2 2 0 Cyclin, N-terminal domain Pigment_DH PF06324.11 gi|332796366|ref|YP_004457866.1| - 0.29 11.3 1.3 1 9.6 0.0 2.4 2 0 0 2 2 2 0 Pigment-dispersing hormone (PDH) SUI1 PF01253.22 gi|332796367|ref|YP_004457867.1| - 4.8e-23 81.5 0.6 6e-23 81.2 0.6 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|332796367|ref|YP_004457867.1| - 1.1e-05 25.6 0.7 1.8e-05 24.9 0.6 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DNA_RNApol_7kD PF03604.13 gi|332796368|ref|YP_004457868.1| - 5.6e-05 22.7 3.6 0.00012 21.6 3.6 1.6 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF2072 PF09845.9 gi|332796368|ref|YP_004457868.1| - 0.00057 20.1 0.3 0.00061 20.1 0.3 1.0 1 0 0 1 1 1 1 Zn-ribbon containing protein Zn-ribbon_8 PF09723.10 gi|332796368|ref|YP_004457868.1| - 0.0066 16.5 0.3 0.01 15.9 0.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|332796368|ref|YP_004457868.1| - 0.019 15.0 3.1 0.077 13.0 0.1 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-C2H2 PF00096.26 gi|332796368|ref|YP_004457868.1| - 0.035 14.6 3.9 1.4 9.5 0.5 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type HypA PF01155.19 gi|332796368|ref|YP_004457868.1| - 0.038 14.0 0.1 0.04 13.9 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA C1_1 PF00130.22 gi|332796368|ref|YP_004457868.1| - 0.05 13.5 0.4 0.06 13.2 0.4 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.6 gi|332796368|ref|YP_004457868.1| - 0.071 12.9 4.3 2.7 7.8 4.7 2.3 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796368|ref|YP_004457868.1| - 0.1 12.5 0.6 12 6.0 0.2 2.1 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|332796368|ref|YP_004457868.1| - 0.15 11.5 0.8 0.15 11.5 0.8 1.9 2 1 0 2 2 2 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|332796368|ref|YP_004457868.1| - 0.26 10.9 1.6 1.3 8.6 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|332796368|ref|YP_004457868.1| - 1.1 9.2 5.0 18 5.4 5.0 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Arginase PF00491.21 gi|332796369|ref|YP_004457869.1| - 6.3e-73 245.7 0.0 7.7e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Arginase family HGTP_anticodon PF03129.20 gi|332796370|ref|YP_004457870.1| - 9.2e-21 73.8 0.2 9.2e-21 73.8 0.2 2.9 3 1 0 3 3 3 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|332796370|ref|YP_004457870.1| - 8.8e-08 32.3 0.2 1e-06 28.9 0.0 2.6 3 0 0 3 3 3 1 tRNA synthetase class II core domain (G, H, P, S and T) Rota_NSP3 PF01665.16 gi|332796370|ref|YP_004457870.1| - 0.0081 15.3 0.1 0.0081 15.3 0.1 1.7 2 0 0 2 2 2 1 Rotavirus non-structural protein NSP3 Rad50_zn_hook PF04423.14 gi|332796370|ref|YP_004457870.1| - 0.1 12.4 0.0 0.1 12.4 0.0 3.4 4 0 0 4 4 4 0 Rad50 zinc hook motif Zn-ribbon_8 PF09723.10 gi|332796370|ref|YP_004457870.1| - 0.79 9.9 2.4 11 6.2 2.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Molydop_binding PF01568.21 gi|332796371|ref|YP_004457871.1| - 0.048 13.7 0.0 4.8 7.3 0.0 2.2 1 1 1 2 2 2 0 Molydopterin dinucleotide binding domain PhoU_div PF01865.16 gi|332796373|ref|YP_004457873.1| - 3.8e-07 29.7 10.1 7.4e-06 25.5 2.8 2.3 1 1 1 2 2 2 2 Protein of unknown function DUF47 PhoU PF01895.19 gi|332796373|ref|YP_004457873.1| - 0.00069 20.0 8.0 0.021 15.2 3.0 2.7 2 1 0 2 2 2 2 PhoU domain SKA2 PF16740.5 gi|332796373|ref|YP_004457873.1| - 0.011 15.6 3.6 1.8 8.3 0.1 3.0 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 2 ALIX_LYPXL_bnd PF13949.6 gi|332796373|ref|YP_004457873.1| - 0.013 14.8 0.4 0.026 13.8 0.1 1.6 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Arg_decarb_HB PF17810.1 gi|332796373|ref|YP_004457873.1| - 0.031 14.5 0.4 0.12 12.6 0.1 2.0 2 0 0 2 2 2 0 Arginine decarboxylase helical bundle domain IL5 PF02025.15 gi|332796373|ref|YP_004457873.1| - 0.074 13.3 0.5 0.33 11.3 0.2 2.1 2 0 0 2 2 2 0 Interleukin 5 tRNA_int_endo PF01974.17 gi|332796374|ref|YP_004457874.1| - 4.3e-26 90.8 0.0 7.4e-26 90.0 0.0 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|332796374|ref|YP_004457874.1| - 5.7e-21 74.0 0.5 1e-20 73.1 0.5 1.4 1 0 0 1 1 1 1 tRNA intron endonuclease, N-terminal domain Stap_Strp_tox_C PF02876.17 gi|332796374|ref|YP_004457874.1| - 0.049 13.9 0.4 0.13 12.6 0.1 1.7 2 0 0 2 2 2 0 Staphylococcal/Streptococcal toxin, beta-grasp domain DUF2083 PF09856.9 gi|332796375|ref|YP_004457875.1| - 0.14 12.0 2.4 1.3 8.9 0.1 2.1 1 1 1 2 2 2 0 Predicted transcriptional regulator (DUF2083) Flavoprotein PF02441.19 gi|332796376|ref|YP_004457876.1| - 2.5e-25 89.1 0.1 3.2e-25 88.7 0.1 1.1 1 0 0 1 1 1 1 Flavoprotein Thi4 PF01946.17 gi|332796377|ref|YP_004457877.1| - 2.5e-81 272.4 0.9 2.9e-81 272.2 0.9 1.0 1 0 0 1 1 1 1 Thi4 family DAO PF01266.24 gi|332796377|ref|YP_004457877.1| - 4.5e-14 52.8 4.3 3.5e-07 30.1 1.2 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|332796377|ref|YP_004457877.1| - 6e-11 42.4 0.9 7.7e-11 42.0 0.9 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332796377|ref|YP_004457877.1| - 2.1e-10 40.3 3.2 9.5e-07 28.2 0.5 3.0 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|332796377|ref|YP_004457877.1| - 5.6e-10 39.3 0.3 2.2e-09 37.4 0.3 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|332796377|ref|YP_004457877.1| - 2.2e-07 30.4 0.0 4e-07 29.5 0.0 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332796377|ref|YP_004457877.1| - 5.2e-07 28.7 0.2 8.1e-07 28.1 0.2 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|332796377|ref|YP_004457877.1| - 9.7e-07 28.3 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|332796377|ref|YP_004457877.1| - 3.2e-05 23.2 0.8 5.8e-05 22.3 0.8 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|332796377|ref|YP_004457877.1| - 0.00012 21.5 0.0 0.00021 20.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332796377|ref|YP_004457877.1| - 0.00036 21.0 0.4 0.0013 19.2 0.4 2.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|332796377|ref|YP_004457877.1| - 0.0033 16.8 0.1 0.0072 15.7 0.1 1.5 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase ThiF PF00899.21 gi|332796377|ref|YP_004457877.1| - 0.0083 15.5 0.0 0.016 14.5 0.0 1.4 1 0 0 1 1 1 1 ThiF family Trp_halogenase PF04820.14 gi|332796377|ref|YP_004457877.1| - 0.013 14.4 2.3 0.071 12.0 0.8 2.1 2 1 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|332796377|ref|YP_004457877.1| - 0.044 12.8 0.1 0.12 11.4 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein GMC_oxred_N PF00732.19 gi|332796377|ref|YP_004457877.1| - 0.074 12.4 0.1 0.21 11.0 0.0 1.6 2 0 0 2 2 2 0 GMC oxidoreductase Shikimate_DH PF01488.20 gi|332796377|ref|YP_004457877.1| - 0.078 13.0 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase K_oxygenase PF13434.6 gi|332796377|ref|YP_004457877.1| - 0.1 11.7 0.0 0.19 10.8 0.0 1.3 1 0 0 1 1 1 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.6 gi|332796377|ref|YP_004457877.1| - 0.15 12.1 0.9 0.26 11.3 0.2 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Ribosomal_S24e PF01282.19 gi|332796378|ref|YP_004457878.1| - 1.4e-22 79.4 0.7 2.1e-22 78.8 0.7 1.3 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|332796379|ref|YP_004457879.1| - 1.3e-14 54.0 2.1 1.7e-14 53.7 2.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S27a Zn_Tnp_IS1595 PF12760.7 gi|332796379|ref|YP_004457879.1| - 0.00034 20.5 3.7 0.0004 20.3 3.7 1.3 1 1 0 1 1 1 1 Transposase zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|332796379|ref|YP_004457879.1| - 0.0012 18.7 0.7 0.0017 18.2 0.7 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796379|ref|YP_004457879.1| - 0.0012 18.7 1.4 0.0019 18.1 1.4 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain GFA PF04828.14 gi|332796379|ref|YP_004457879.1| - 0.0021 18.3 0.9 0.2 12.0 0.1 2.0 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme Ribosomal_L37e PF01907.19 gi|332796379|ref|YP_004457879.1| - 0.0059 16.7 1.1 0.01 16.0 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L37e RNA_POL_M_15KD PF02150.16 gi|332796379|ref|YP_004457879.1| - 0.0083 16.0 0.2 0.023 14.6 0.2 1.8 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|332796379|ref|YP_004457879.1| - 0.023 14.6 2.2 0.076 12.9 2.2 1.8 1 1 0 1 1 1 0 Nudix N-terminal zf-piccolo PF05715.13 gi|332796379|ref|YP_004457879.1| - 0.027 14.6 0.8 0.035 14.2 0.8 1.2 1 0 0 1 1 1 0 Piccolo Zn-finger Lar_restr_allev PF14354.6 gi|332796379|ref|YP_004457879.1| - 0.028 14.8 1.4 0.049 14.0 1.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|332796379|ref|YP_004457879.1| - 0.031 13.8 1.8 0.21 11.2 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 gi|332796379|ref|YP_004457879.1| - 0.035 14.2 0.3 0.68 10.1 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain YhfH PF14149.6 gi|332796379|ref|YP_004457879.1| - 0.036 14.1 0.6 0.036 14.1 0.6 2.1 2 0 0 2 2 2 0 YhfH-like protein zf-RRN7 PF11781.8 gi|332796379|ref|YP_004457879.1| - 0.044 13.5 2.7 14 5.5 0.2 3.0 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_13 PF09855.9 gi|332796379|ref|YP_004457879.1| - 0.07 13.3 1.8 0.71 10.1 0.1 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) HalOD2 PF18547.1 gi|332796379|ref|YP_004457879.1| - 0.085 12.8 2.4 3.9 7.5 0.5 2.2 2 0 0 2 2 2 0 Halobacterial output domain 2 zinc_ribbon_2 PF13240.6 gi|332796379|ref|YP_004457879.1| - 0.16 11.7 5.5 0.63 9.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332796379|ref|YP_004457879.1| - 0.25 10.8 6.4 0.31 10.5 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|332796379|ref|YP_004457879.1| - 0.26 12.0 5.1 1.2 9.8 0.7 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_4 PF13717.6 gi|332796379|ref|YP_004457879.1| - 0.29 11.1 3.8 1.3 9.0 0.5 2.5 2 1 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|332796379|ref|YP_004457879.1| - 0.3 10.8 4.5 1.1 9.0 0.2 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf_C2H2_10 PF18414.1 gi|332796379|ref|YP_004457879.1| - 0.43 10.2 2.1 7.5 6.2 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger Mu-like_Com PF10122.9 gi|332796379|ref|YP_004457879.1| - 1 8.9 5.8 0.25 10.8 1.0 2.1 1 1 2 3 3 3 0 Mu-like prophage protein Com Peptidase_M22 PF00814.25 gi|332796380|ref|YP_004457880.1| - 1.3e-74 251.3 0.0 1.5e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 Glycoprotease family Pkinase PF00069.25 gi|332796381|ref|YP_004457881.1| - 8.1e-10 38.5 0.9 9.7e-10 38.2 0.9 1.1 1 0 0 1 1 1 1 Protein kinase domain RIO1 PF01163.22 gi|332796381|ref|YP_004457881.1| - 2.5e-09 37.0 0.5 3.9e-09 36.4 0.1 1.5 1 1 1 2 2 2 1 RIO1 family Pkinase_Tyr PF07714.17 gi|332796381|ref|YP_004457881.1| - 5e-07 29.3 0.2 5.8e-07 29.1 0.2 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|332796381|ref|YP_004457881.1| - 6.9e-07 28.8 0.2 1.2e-06 28.0 0.2 1.4 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|332796381|ref|YP_004457881.1| - 8.6e-07 29.1 0.0 0.00026 21.0 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Choline_kinase PF01633.20 gi|332796381|ref|YP_004457881.1| - 0.0028 17.3 0.2 0.006 16.2 0.1 1.7 1 1 1 2 2 2 1 Choline/ethanolamine kinase EcKinase PF02958.20 gi|332796381|ref|YP_004457881.1| - 0.0061 15.9 0.0 0.0091 15.3 0.0 1.3 1 0 0 1 1 1 1 Ecdysteroid kinase Ham1p_like PF01725.16 gi|332796382|ref|YP_004457882.1| - 3.4e-50 170.6 0.1 3.8e-50 170.4 0.1 1.0 1 0 0 1 1 1 1 Ham1 family Aldo_ket_red PF00248.21 gi|332796383|ref|YP_004457883.1| - 8.5e-47 159.8 0.1 1.8e-46 158.7 0.1 1.5 1 1 0 1 1 1 1 Aldo/keto reductase family vATP-synt_AC39 PF01992.16 gi|332796385|ref|YP_004457885.1| - 1.1e-17 64.6 9.4 1.6e-17 64.1 9.4 1.2 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit Ribosomal_S8 PF00410.19 gi|332796385|ref|YP_004457885.1| - 0.031 14.2 0.2 0.59 10.1 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein S8 BET PF17035.5 gi|332796385|ref|YP_004457885.1| - 0.11 12.7 5.2 4.3 7.6 0.1 2.9 3 0 0 3 3 3 0 Bromodomain extra-terminal - transcription regulation SICA_alpha PF12887.7 gi|332796386|ref|YP_004457886.1| - 0.0011 18.9 1.1 0.0012 18.8 1.1 1.1 1 0 0 1 1 1 1 SICA extracellular alpha domain Rsa3 PF14615.6 gi|332796386|ref|YP_004457886.1| - 0.0027 17.2 1.6 0.034 13.7 0.2 2.3 2 0 0 2 2 2 1 Ribosome-assembly protein 3 V-ATPase_G_2 PF16999.5 gi|332796386|ref|YP_004457886.1| - 0.003 18.0 4.6 0.0046 17.4 4.6 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit DUF3410 PF11890.8 gi|332796386|ref|YP_004457886.1| - 0.0079 16.0 0.4 0.011 15.5 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF3410) GLYCAM-1 PF05242.11 gi|332796386|ref|YP_004457886.1| - 0.021 15.0 3.8 0.17 12.0 2.7 2.0 1 1 1 2 2 2 0 Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1) ApoLp-III PF07464.11 gi|332796386|ref|YP_004457886.1| - 0.027 14.6 6.2 0.064 13.4 6.2 1.6 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Prominin PF05478.11 gi|332796386|ref|YP_004457886.1| - 0.028 12.4 1.9 0.029 12.3 1.9 1.0 1 0 0 1 1 1 0 Prominin FdhE PF04216.12 gi|332796386|ref|YP_004457886.1| - 0.031 14.2 0.3 0.036 13.9 0.3 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation MVP_shoulder PF11978.8 gi|332796386|ref|YP_004457886.1| - 0.033 14.2 0.2 0.041 13.9 0.2 1.2 1 0 0 1 1 1 0 Shoulder domain DUF3417 PF11897.8 gi|332796386|ref|YP_004457886.1| - 0.033 14.6 0.1 0.045 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3417) V-ATPase_G PF03179.15 gi|332796386|ref|YP_004457886.1| - 0.04 14.5 7.2 0.46 11.0 1.0 2.5 1 1 1 2 2 2 0 Vacuolar (H+)-ATPase G subunit DUF883 PF05957.13 gi|332796386|ref|YP_004457886.1| - 0.049 14.2 3.9 0.11 13.1 2.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Z1 PF10593.9 gi|332796386|ref|YP_004457886.1| - 0.051 13.1 1.6 0.056 12.9 1.6 1.2 1 0 0 1 1 1 0 Z1 domain PP1_inhibitor PF05361.12 gi|332796386|ref|YP_004457886.1| - 0.074 13.1 3.6 0.14 12.1 2.3 1.7 1 1 1 2 2 2 0 PKC-activated protein phosphatase-1 inhibitor DUF2624 PF11116.8 gi|332796386|ref|YP_004457886.1| - 0.08 13.8 4.0 0.14 13.0 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2624) ATP-synt_B PF00430.18 gi|332796386|ref|YP_004457886.1| - 0.11 12.6 7.0 0.21 11.7 6.8 1.5 1 1 0 1 1 1 0 ATP synthase B/B' CF(0) EMC3_TMCO1 PF01956.16 gi|332796386|ref|YP_004457886.1| - 0.14 11.9 1.7 0.17 11.6 1.7 1.2 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like AbiH PF14253.6 gi|332796386|ref|YP_004457886.1| - 0.16 11.8 4.9 0.21 11.4 4.9 1.1 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Peptidase_M41 PF01434.18 gi|332796386|ref|YP_004457886.1| - 0.77 9.6 5.4 2.2 8.1 5.3 1.7 1 1 0 1 1 1 0 Peptidase family M41 Kri1 PF05178.12 gi|332796386|ref|YP_004457886.1| - 1 9.9 10.9 0.93 10.1 5.4 2.2 1 1 1 2 2 2 0 KRI1-like family Spore_GerAC PF05504.11 gi|332796386|ref|YP_004457886.1| - 2.2 8.5 12.0 17 5.6 12.0 1.9 1 1 0 1 1 1 0 Spore germination B3/ GerAC like, C-terminal YtxH PF12732.7 gi|332796386|ref|YP_004457886.1| - 4.3 7.9 9.8 3.5 8.2 1.2 2.1 1 1 1 2 2 2 0 YtxH-like protein GCD14 PF08704.10 gi|332796387|ref|YP_004457887.1| - 1.6e-34 119.7 0.0 2.2e-34 119.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|332796387|ref|YP_004457887.1| - 6.3e-12 45.5 0.0 9.4e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|332796387|ref|YP_004457887.1| - 9.3e-10 38.6 0.0 1.3e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|332796387|ref|YP_004457887.1| - 1.6e-07 31.9 0.0 2.6e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain GCD14_N PF14801.6 gi|332796387|ref|YP_004457887.1| - 2.2e-07 30.6 0.1 4.3e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit N-term Ubie_methyltran PF01209.18 gi|332796387|ref|YP_004457887.1| - 2.1e-06 27.3 0.0 3e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|332796387|ref|YP_004457887.1| - 9.1e-05 22.4 0.0 0.00019 21.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|332796387|ref|YP_004457887.1| - 0.00011 22.2 0.0 0.00018 21.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|332796387|ref|YP_004457887.1| - 0.00021 20.8 0.0 0.00029 20.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|332796387|ref|YP_004457887.1| - 0.00075 19.1 0.0 0.0049 16.4 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|332796387|ref|YP_004457887.1| - 0.0008 20.0 0.0 0.0017 19.0 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|332796387|ref|YP_004457887.1| - 0.012 15.4 0.0 0.064 13.1 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.6 gi|332796387|ref|YP_004457887.1| - 0.017 16.1 0.0 0.029 15.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain RrnaAD PF00398.20 gi|332796387|ref|YP_004457887.1| - 0.019 14.0 0.0 0.028 13.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_12 PF08242.12 gi|332796387|ref|YP_004457887.1| - 0.032 15.0 0.0 0.087 13.6 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_4 PF02390.17 gi|332796387|ref|YP_004457887.1| - 0.039 13.4 0.0 0.073 12.5 0.0 1.4 1 1 0 1 1 1 0 Putative methyltransferase UPF0020 PF01170.18 gi|332796387|ref|YP_004457887.1| - 0.12 12.1 0.4 0.91 9.2 0.4 2.0 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 RHH_1 PF01402.21 gi|332796388|ref|YP_004457888.1| - 5.3e-09 35.7 0.0 6.7e-09 35.4 0.0 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family ParD_antitoxin PF03693.14 gi|332796388|ref|YP_004457888.1| - 1.4e-05 25.4 0.0 1.4e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RHH_8 PF17723.1 gi|332796388|ref|YP_004457888.1| - 0.00043 20.5 0.0 0.00045 20.4 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family HicB_lk_antitox PF15919.5 gi|332796388|ref|YP_004457888.1| - 0.023 14.8 0.0 0.024 14.8 0.0 1.1 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system TrmB PF01978.19 gi|332796389|ref|YP_004457889.1| - 3.3e-19 68.5 0.1 6.3e-19 67.6 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|332796389|ref|YP_004457889.1| - 3e-09 36.3 1.1 6.7e-09 35.2 0.4 2.1 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332796389|ref|YP_004457889.1| - 6.5e-06 26.0 0.4 1.9e-05 24.5 0.4 1.8 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|332796389|ref|YP_004457889.1| - 7.3e-06 26.0 0.2 4.1e-05 23.6 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|332796389|ref|YP_004457889.1| - 1.4e-05 25.0 0.7 0.00014 21.8 0.2 2.5 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|332796389|ref|YP_004457889.1| - 2e-05 24.3 0.1 4.9e-05 23.1 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|332796389|ref|YP_004457889.1| - 3.3e-05 23.7 0.1 5.9e-05 22.9 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|332796389|ref|YP_004457889.1| - 3.8e-05 23.6 0.1 0.00022 21.2 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn helix AbiEi_4 PF13338.6 gi|332796389|ref|YP_004457889.1| - 0.00041 20.4 0.9 0.0015 18.7 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator, AbiEi antitoxin HTH_34 PF13601.6 gi|332796389|ref|YP_004457889.1| - 0.00057 20.0 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|332796389|ref|YP_004457889.1| - 0.0011 18.9 0.3 0.011 15.7 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|332796389|ref|YP_004457889.1| - 0.0017 18.7 0.0 0.0029 18.0 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_27 PF13463.6 gi|332796389|ref|YP_004457889.1| - 0.0019 18.6 0.0 0.0048 17.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_CodY PF08222.11 gi|332796389|ref|YP_004457889.1| - 0.0035 16.9 0.0 0.0087 15.6 0.0 1.7 1 0 0 1 1 1 1 CodY helix-turn-helix domain Herpes_IR6 PF06307.12 gi|332796389|ref|YP_004457889.1| - 0.0035 16.9 0.0 0.0051 16.4 0.0 1.1 1 0 0 1 1 1 1 Herpesvirus IR6 protein HTH_10 PF04967.12 gi|332796389|ref|YP_004457889.1| - 0.0035 17.1 0.1 0.036 13.9 0.0 2.4 2 0 0 2 2 2 1 HTH DNA binding domain HTH_11 PF08279.12 gi|332796389|ref|YP_004457889.1| - 0.0055 16.6 0.5 0.026 14.5 0.4 2.2 1 1 1 2 2 2 1 HTH domain GntR PF00392.21 gi|332796389|ref|YP_004457889.1| - 0.0063 16.1 0.7 0.019 14.6 0.1 2.1 2 1 1 3 3 2 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.6 gi|332796389|ref|YP_004457889.1| - 0.0076 16.0 0.2 0.078 12.8 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_20 PF12840.7 gi|332796389|ref|YP_004457889.1| - 0.0088 16.1 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|332796389|ref|YP_004457889.1| - 0.011 15.6 0.0 0.031 14.1 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family HTH_17 PF12728.7 gi|332796389|ref|YP_004457889.1| - 0.014 15.6 0.2 0.3 11.3 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1884 PF08967.10 gi|332796389|ref|YP_004457889.1| - 0.018 15.3 0.5 0.98 9.7 0.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF1884) Mga PF05043.13 gi|332796389|ref|YP_004457889.1| - 0.02 15.5 0.1 0.059 14.0 0.1 1.8 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|332796389|ref|YP_004457889.1| - 0.02 14.7 0.2 0.06 13.2 0.1 1.9 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_9 PF08221.11 gi|332796389|ref|YP_004457889.1| - 0.029 14.5 0.1 0.1 12.7 0.1 1.9 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_7 PF02796.15 gi|332796389|ref|YP_004457889.1| - 0.034 14.2 0.6 0.2 11.8 0.1 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.20 gi|332796389|ref|YP_004457889.1| - 0.037 14.4 0.0 0.079 13.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|332796389|ref|YP_004457889.1| - 0.041 13.7 0.1 0.13 12.1 0.0 1.8 2 0 0 2 2 1 0 TFIIE alpha subunit Sulfolobus_pRN PF05584.11 gi|332796389|ref|YP_004457889.1| - 0.048 13.7 0.8 0.15 12.1 0.9 1.8 1 1 1 2 2 2 0 Sulfolobus plasmid regulatory protein PadR PF03551.14 gi|332796389|ref|YP_004457889.1| - 0.049 13.6 0.1 0.13 12.3 0.1 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_40 PF14493.6 gi|332796389|ref|YP_004457889.1| - 0.054 14.0 0.6 0.36 11.3 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|332796389|ref|YP_004457889.1| - 0.06 13.8 0.2 0.48 10.9 0.1 2.4 1 1 1 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_50 PF18024.1 gi|332796389|ref|YP_004457889.1| - 0.06 13.0 0.2 1 9.0 0.0 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain FUR PF01475.19 gi|332796389|ref|YP_004457889.1| - 0.078 13.1 0.0 0.22 11.7 0.0 1.7 2 0 0 2 2 1 0 Ferric uptake regulator family PLDc_2 PF13091.6 gi|332796389|ref|YP_004457889.1| - 0.11 12.4 0.3 1.2 9.0 0.1 2.3 1 1 1 2 2 2 0 PLD-like domain DprA_WH PF17782.1 gi|332796389|ref|YP_004457889.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_8 PF02954.19 gi|332796389|ref|YP_004457889.1| - 0.49 10.2 4.1 5.2 6.9 0.1 3.0 3 0 0 3 3 3 0 Bacterial regulatory protein, Fis family Ribosomal_S25 PF03297.15 gi|332796390|ref|YP_004457890.1| - 7.2e-19 67.9 9.0 9.3e-19 67.5 9.0 1.1 1 0 0 1 1 1 1 S25 ribosomal protein HTH_24 PF13412.6 gi|332796390|ref|YP_004457890.1| - 0.00012 21.5 0.7 0.00012 21.5 0.7 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|332796390|ref|YP_004457890.1| - 0.00022 21.5 2.9 0.082 13.3 0.1 2.4 1 1 1 2 2 2 2 Transcriptional regulator IF2_N PF04760.15 gi|332796390|ref|YP_004457890.1| - 0.0017 18.1 1.5 1.2 9.1 0.1 2.5 1 1 1 2 2 2 2 Translation initiation factor IF-2, N-terminal region MarR_2 PF12802.7 gi|332796390|ref|YP_004457890.1| - 0.0025 17.6 0.1 0.0046 16.8 0.0 1.4 2 0 0 2 2 2 1 MarR family DDRGK PF09756.9 gi|332796390|ref|YP_004457890.1| - 0.0027 17.3 10.7 0.0043 16.7 10.7 1.3 1 1 0 1 1 1 1 DDRGK domain HTH_Crp_2 PF13545.6 gi|332796390|ref|YP_004457890.1| - 0.0031 17.5 0.4 0.0078 16.2 0.3 1.9 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|332796390|ref|YP_004457890.1| - 0.0035 17.3 0.5 0.0035 17.3 0.5 1.8 2 0 0 2 2 2 1 HTH domain Blo-t-5 PF11642.8 gi|332796390|ref|YP_004457890.1| - 0.0062 16.5 3.0 0.0076 16.2 3.0 1.1 1 0 0 1 1 1 1 Mite allergen Blo t 5 Pox_VLTF3 PF04947.14 gi|332796390|ref|YP_004457890.1| - 0.1 12.3 7.1 0.18 11.5 7.1 1.6 1 1 0 1 1 1 0 Poxvirus Late Transcription Factor VLTF3 like CN_hydrolase PF00795.22 gi|332796391|ref|YP_004457891.1| - 1e-22 80.7 0.0 1.4e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase AP_endonuc_2 PF01261.24 gi|332796391|ref|YP_004457891.1| - 0.048 13.1 0.0 0.074 12.5 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel Ribosomal_S19 PF00203.21 gi|332796391|ref|YP_004457891.1| - 0.099 12.5 0.1 0.27 11.2 0.1 1.7 1 0 0 1 1 1 0 Ribosomal protein S19 Topoisom_bac PF01131.20 gi|332796392|ref|YP_004457892.1| - 9.4e-71 239.0 0.6 8.6e-70 235.8 0.6 2.4 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|332796392|ref|YP_004457892.1| - 9.1e-29 99.7 0.1 4e-28 97.7 0.0 2.3 2 0 0 2 2 2 1 Toprim domain DEAD PF00270.29 gi|332796392|ref|YP_004457892.1| - 9.8e-13 48.2 0.0 6.4e-12 45.6 0.0 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase zf_Rg PF17915.1 gi|332796392|ref|YP_004457892.1| - 3.2e-10 39.3 3.8 3.5e-10 39.1 0.4 2.3 2 0 0 2 2 2 1 Reverse gyrase zinc finger Helicase_C PF00271.31 gi|332796392|ref|YP_004457892.1| - 7.7e-06 26.2 1.2 3.6 8.0 0.1 5.0 4 0 0 4 4 4 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332796392|ref|YP_004457892.1| - 2.1e-05 24.6 0.2 9.3e-05 22.5 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit Terminase_GpA PF05876.12 gi|332796392|ref|YP_004457892.1| - 0.0028 16.3 0.0 0.0056 15.3 0.0 1.4 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) AAA_25 PF13481.6 gi|332796392|ref|YP_004457892.1| - 0.0056 16.3 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|332796392|ref|YP_004457892.1| - 0.031 14.6 0.0 0.085 13.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain DUF2150 PF09920.9 gi|332796392|ref|YP_004457892.1| - 0.033 14.2 0.0 0.1 12.5 0.0 1.8 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2150) HypA PF01155.19 gi|332796392|ref|YP_004457892.1| - 0.035 14.1 1.9 5.9 6.9 0.1 3.0 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DnaB_C PF03796.15 gi|332796392|ref|YP_004457892.1| - 0.037 13.4 0.0 0.091 12.1 0.0 1.6 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_11 PF13086.6 gi|332796392|ref|YP_004457892.1| - 0.042 13.6 0.1 0.16 11.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain zf-ribbon_3 PF13248.6 gi|332796392|ref|YP_004457892.1| - 0.07 12.6 4.9 4 7.0 0.6 2.5 2 0 0 2 2 2 0 zinc-ribbon domain DUF4202 PF13875.6 gi|332796392|ref|YP_004457892.1| - 0.13 12.1 0.0 0.83 9.5 0.0 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4202) Zn-ribbon_8 PF09723.10 gi|332796392|ref|YP_004457892.1| - 0.3 11.3 5.1 1.4 9.1 0.4 2.7 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|332796392|ref|YP_004457892.1| - 0.85 9.6 2.2 22 5.1 1.2 2.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796392|ref|YP_004457892.1| - 1.5 8.8 3.5 14 5.7 0.5 2.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-FPG_IleRS PF06827.14 gi|332796392|ref|YP_004457892.1| - 2.2 8.2 4.5 2.3 8.2 0.1 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS AAA PF00004.29 gi|332796393|ref|YP_004457893.1| - 1.4e-100 332.9 0.0 1.1e-49 168.2 0.0 3.0 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|332796393|ref|YP_004457893.1| - 1e-31 108.4 4.7 5.1e-16 58.2 0.2 3.2 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|332796393|ref|YP_004457893.1| - 1.1e-22 80.0 0.1 3.5e-22 78.4 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|332796393|ref|YP_004457893.1| - 6.2e-17 61.8 0.0 2.6e-08 33.8 0.0 2.9 2 1 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|332796393|ref|YP_004457893.1| - 2.3e-15 56.1 0.4 5.8e-15 54.8 0.4 1.8 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|332796393|ref|YP_004457893.1| - 7.4e-15 55.7 0.1 1.7e-06 28.5 0.0 3.7 2 1 0 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|332796393|ref|YP_004457893.1| - 1.4e-14 54.6 0.0 2.7e-07 30.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|332796393|ref|YP_004457893.1| - 3.9e-12 46.6 0.4 0.0015 18.8 0.0 4.4 2 2 1 3 3 3 2 AAA domain TIP49 PF06068.13 gi|332796393|ref|YP_004457893.1| - 1e-11 44.6 0.2 3.9e-05 23.0 0.0 2.9 3 0 0 3 3 3 2 TIP49 P-loop domain Vps4_C PF09336.10 gi|332796393|ref|YP_004457893.1| - 4.8e-11 42.5 0.2 0.00027 20.9 0.0 2.9 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain AAA_5 PF07728.14 gi|332796393|ref|YP_004457893.1| - 5.5e-11 42.6 0.9 0.0015 18.5 0.1 4.3 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|332796393|ref|YP_004457893.1| - 2.1e-10 40.7 0.0 0.00023 21.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|332796393|ref|YP_004457893.1| - 3.2e-10 40.3 0.0 0.0012 19.0 0.0 2.7 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|332796393|ref|YP_004457893.1| - 1.7e-09 37.7 0.0 0.00083 19.1 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_18 PF13238.6 gi|332796393|ref|YP_004457893.1| - 2.3e-09 37.9 0.1 0.00041 20.9 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|332796393|ref|YP_004457893.1| - 1.5e-07 31.8 0.0 0.022 15.0 0.0 2.6 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|332796393|ref|YP_004457893.1| - 2.2e-07 31.2 0.0 0.007 16.7 0.0 3.1 3 0 0 3 3 2 2 RNA helicase Mg_chelatase PF01078.21 gi|332796393|ref|YP_004457893.1| - 2.5e-07 30.3 1.0 0.0089 15.4 0.1 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|332796393|ref|YP_004457893.1| - 3.5e-07 30.0 0.6 0.034 13.7 0.2 3.6 3 1 0 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|332796393|ref|YP_004457893.1| - 1.2e-06 28.4 0.0 0.041 13.6 0.0 2.7 2 1 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|332796393|ref|YP_004457893.1| - 3.4e-06 27.1 0.0 0.076 13.0 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE ATPase PF06745.13 gi|332796393|ref|YP_004457893.1| - 1e-05 25.0 0.6 0.039 13.3 0.1 3.9 3 1 1 4 4 4 1 KaiC Sigma54_activat PF00158.26 gi|332796393|ref|YP_004457893.1| - 1.3e-05 25.0 0.0 0.3 10.8 0.0 3.6 3 1 0 3 3 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|332796393|ref|YP_004457893.1| - 1.4e-05 25.1 0.9 0.38 10.6 0.0 3.5 4 0 0 4 4 3 2 NACHT domain Zeta_toxin PF06414.12 gi|332796393|ref|YP_004457893.1| - 1.5e-05 24.4 0.0 0.07 12.4 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_3 PF07726.11 gi|332796393|ref|YP_004457893.1| - 1.7e-05 24.7 0.0 0.12 12.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|332796393|ref|YP_004457893.1| - 2.9e-05 23.7 0.0 0.11 12.0 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region ABC_tran PF00005.27 gi|332796393|ref|YP_004457893.1| - 3.1e-05 24.5 0.0 1.1 9.8 0.0 3.5 3 0 0 3 3 3 2 ABC transporter ATPase_2 PF01637.18 gi|332796393|ref|YP_004457893.1| - 5.8e-05 23.1 0.0 0.038 13.9 0.0 3.3 2 1 1 3 3 3 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|332796393|ref|YP_004457893.1| - 6.4e-05 22.9 0.0 0.015 15.1 0.0 2.8 2 1 0 2 2 2 1 Bacterial dnaA protein DUF815 PF05673.13 gi|332796393|ref|YP_004457893.1| - 0.00015 21.0 0.0 0.13 11.4 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|332796393|ref|YP_004457893.1| - 0.00031 19.9 0.1 0.72 8.9 0.0 2.4 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|332796393|ref|YP_004457893.1| - 0.00036 21.0 0.0 0.59 10.6 0.0 2.9 2 0 0 2 2 2 1 AAA domain UFD1 PF03152.14 gi|332796393|ref|YP_004457893.1| - 0.0011 18.5 0.1 0.0028 17.2 0.1 1.7 1 1 0 1 1 1 1 Ubiquitin fusion degradation protein UFD1 PhoH PF02562.16 gi|332796393|ref|YP_004457893.1| - 0.0012 18.4 1.1 0.18 11.2 0.2 2.6 2 0 0 2 2 2 1 PhoH-like protein AFG1_ATPase PF03969.16 gi|332796393|ref|YP_004457893.1| - 0.0036 16.3 0.0 2.7 6.8 0.0 2.5 2 0 0 2 2 2 2 AFG1-like ATPase Rad17 PF03215.15 gi|332796393|ref|YP_004457893.1| - 0.0037 17.2 0.0 3.6 7.5 0.0 3.1 2 1 0 2 2 2 0 Rad17 P-loop domain Sigma54_activ_2 PF14532.6 gi|332796393|ref|YP_004457893.1| - 0.0043 17.2 0.0 2.8 8.1 0.0 2.7 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|332796393|ref|YP_004457893.1| - 0.0063 15.9 0.1 1.2 8.5 0.1 2.4 2 0 0 2 2 2 1 Isopentenyl transferase AAA_11 PF13086.6 gi|332796393|ref|YP_004457893.1| - 0.0064 16.3 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|332796393|ref|YP_004457893.1| - 0.0065 15.7 0.0 2.5 7.2 0.0 2.7 2 0 0 2 2 2 1 NB-ARC domain AAA_19 PF13245.6 gi|332796393|ref|YP_004457893.1| - 0.0073 16.6 0.5 2.5 8.4 0.0 3.1 2 1 0 3 3 2 1 AAA domain AAA_30 PF13604.6 gi|332796393|ref|YP_004457893.1| - 0.0097 15.6 0.3 2.5 7.8 0.2 2.9 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|332796393|ref|YP_004457893.1| - 0.0099 15.2 0.0 1.6 7.9 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|332796393|ref|YP_004457893.1| - 0.011 15.6 1.6 10 6.0 0.0 3.8 2 2 1 3 3 3 0 NTPase TniB PF05621.11 gi|332796393|ref|YP_004457893.1| - 0.014 14.8 0.0 3.7 6.9 0.0 3.2 3 0 0 3 3 3 0 Bacterial TniB protein T2SSE PF00437.20 gi|332796393|ref|YP_004457893.1| - 0.014 14.5 0.0 2.7 7.0 0.0 2.7 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|332796393|ref|YP_004457893.1| - 0.018 14.8 0.1 7.7 6.2 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase SKI PF01202.22 gi|332796393|ref|YP_004457893.1| - 0.026 14.7 0.0 6.3 6.9 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase AAA_29 PF13555.6 gi|332796393|ref|YP_004457893.1| - 0.028 14.2 0.6 12 5.7 0.0 3.5 4 0 0 4 4 3 0 P-loop containing region of AAA domain PduV-EutP PF10662.9 gi|332796393|ref|YP_004457893.1| - 0.037 13.8 0.0 13 5.5 0.0 2.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Cytidylate_kin2 PF13189.6 gi|332796393|ref|YP_004457893.1| - 0.04 14.1 0.0 3.1 7.9 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Guanylate_kin PF00625.21 gi|332796393|ref|YP_004457893.1| - 0.04 13.6 0.1 12 5.5 0.0 3.8 2 2 2 4 4 4 0 Guanylate kinase MMR_HSR1 PF01926.23 gi|332796393|ref|YP_004457893.1| - 0.072 13.2 0.0 4.3 7.4 0.0 2.9 3 0 0 3 3 2 0 50S ribosome-binding GTPase Viral_helicase1 PF01443.18 gi|332796393|ref|YP_004457893.1| - 0.079 12.7 0.0 3.3 7.4 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_6 PF12774.7 gi|332796393|ref|YP_004457893.1| - 0.13 11.2 0.0 8.4 5.2 0.0 2.4 2 0 0 2 2 2 0 Hydrolytic ATP binding site of dynein motor region PhosphMutase PF10143.9 gi|332796394|ref|YP_004457894.1| - 7.4e-52 175.7 0.0 1.2e-51 174.9 0.0 1.3 1 0 0 1 1 1 1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Metalloenzyme PF01676.18 gi|332796394|ref|YP_004457894.1| - 5e-39 134.2 0.1 6.1e-39 133.9 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|332796394|ref|YP_004457894.1| - 0.00011 21.9 0.1 0.0016 18.1 0.0 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|332796394|ref|YP_004457894.1| - 0.0033 16.8 0.0 0.023 14.1 0.0 2.0 2 1 0 2 2 2 1 Sulfatase AAA_28 PF13521.6 gi|332796394|ref|YP_004457894.1| - 0.0062 16.8 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain HHA PF05321.11 gi|332796394|ref|YP_004457894.1| - 0.061 13.6 0.0 0.26 11.6 0.0 2.0 2 0 0 2 2 2 0 Haemolysin expression modulating protein Alk_phosphatase PF00245.20 gi|332796394|ref|YP_004457894.1| - 0.094 11.7 0.9 0.22 10.4 0.3 1.9 2 1 0 2 2 2 0 Alkaline phosphatase DUF359 PF04019.12 gi|332796395|ref|YP_004457895.1| - 5.9e-35 119.7 0.0 7.7e-35 119.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) ToxS PF17323.2 gi|332796395|ref|YP_004457895.1| - 0.017 14.8 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Trans-membrane regulatory protein ToxS SHS2_Rpb7-N PF03876.17 gi|332796396|ref|YP_004457896.1| - 1.4e-16 60.6 0.0 2.9e-16 59.6 0.0 1.5 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|332796396|ref|YP_004457896.1| - 5.4e-16 58.7 0.6 9.7e-16 57.9 0.6 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|332796396|ref|YP_004457896.1| - 0.033 14.4 0.0 0.051 13.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|332796397|ref|YP_004457897.1| - 1.8e-11 44.3 0.0 2.3e-11 44.0 0.0 1.1 1 0 0 1 1 1 1 PIN like domain PIN_4 PF13638.6 gi|332796397|ref|YP_004457897.1| - 1.7e-05 25.1 0.2 0.00039 20.7 0.2 2.0 1 1 0 1 1 1 1 PIN domain PIN PF01850.21 gi|332796397|ref|YP_004457897.1| - 2.8e-05 24.6 1.7 7.9e-05 23.1 1.7 1.7 1 1 0 1 1 1 1 PIN domain DUF4116 PF13475.6 gi|332796397|ref|YP_004457897.1| - 0.031 14.0 3.6 0.61 9.9 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4116) GTP_EFTU PF00009.27 gi|332796398|ref|YP_004457898.1| - 3e-29 101.9 0.2 1.2e-28 100.0 0.2 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|332796398|ref|YP_004457898.1| - 4.2e-29 100.6 1.1 9.3e-29 99.5 0.9 1.7 2 0 0 2 2 2 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|332796398|ref|YP_004457898.1| - 3.4e-07 30.5 0.3 4e-06 27.1 0.4 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|332796398|ref|YP_004457898.1| - 5.2e-05 23.2 0.1 0.0026 17.7 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|332796398|ref|YP_004457898.1| - 0.0001 22.4 0.0 0.00031 20.8 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|332796398|ref|YP_004457898.1| - 0.0016 18.2 0.6 0.87 9.3 0.1 2.4 2 0 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation NRDD PF13597.6 gi|332796398|ref|YP_004457898.1| - 0.0056 15.5 0.1 0.094 11.5 0.1 2.0 2 0 0 2 2 2 1 Anaerobic ribonucleoside-triphosphate reductase FeoB_N PF02421.18 gi|332796398|ref|YP_004457898.1| - 0.0098 15.4 0.4 4.3 6.8 0.0 2.4 2 0 0 2 2 2 2 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|332796398|ref|YP_004457898.1| - 0.015 15.3 0.1 0.031 14.3 0.1 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Ribosomal_S6e PF01092.19 gi|332796399|ref|YP_004457899.1| - 7.3e-26 90.6 0.0 1.4e-25 89.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein S6e NADPH_Ox PF08414.10 gi|332796399|ref|YP_004457899.1| - 0.066 13.5 0.1 0.099 13.0 0.1 1.3 1 0 0 1 1 1 0 Respiratory burst NADPH oxidase CbiX PF01903.17 gi|332796400|ref|YP_004457900.1| - 1.9e-24 86.0 0.0 2.2e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 CbiX CbiK PF06180.11 gi|332796400|ref|YP_004457900.1| - 2.5e-05 23.7 0.0 2.8e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 Cobalt chelatase (CbiK) G6PD_N PF00479.22 gi|332796400|ref|YP_004457900.1| - 0.0023 18.6 0.0 0.0024 18.5 0.0 1.1 1 0 0 1 1 1 1 Glucose-6-phosphate dehydrogenase, NAD binding domain RVT_3 PF13456.6 gi|332796401|ref|YP_004457901.1| - 4.8e-21 74.8 0.0 5.6e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|332796401|ref|YP_004457901.1| - 0.00031 21.0 0.0 0.0005 20.3 0.0 1.3 1 1 0 1 1 1 1 RNase H DUF2423 PF10338.9 gi|332796401|ref|YP_004457901.1| - 0.094 13.0 0.8 13 6.1 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2423) Ribosomal_S13_N PF08069.12 gi|332796402|ref|YP_004457902.1| - 1.5e-23 82.6 0.2 3.6e-23 81.4 0.1 1.7 2 0 0 2 2 2 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|332796402|ref|YP_004457902.1| - 2.1e-13 50.2 0.0 2.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 MFS_5 PF05631.14 gi|332796402|ref|YP_004457902.1| - 0.16 10.8 0.0 0.18 10.7 0.0 1.0 1 0 0 1 1 1 0 Sugar-tranasporters, 12 TM Meth_synt_2 PF01717.18 gi|332796403|ref|YP_004457903.1| - 1.9e-66 224.5 0.0 2.3e-66 224.3 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|332796403|ref|YP_004457903.1| - 1e-12 48.2 0.7 2.6e-12 46.9 0.7 1.5 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|332796403|ref|YP_004457903.1| - 0.00033 19.9 0.0 0.00047 19.4 0.0 1.1 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) COX2 PF00116.20 gi|332796403|ref|YP_004457903.1| - 0.022 14.6 0.1 0.12 12.2 0.1 2.0 2 0 0 2 2 2 0 Cytochrome C oxidase subunit II, periplasmic domain PYNP_C PF07831.13 gi|332796403|ref|YP_004457903.1| - 0.035 13.8 0.6 5.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Pyrimidine nucleoside phosphorylase C-terminal domain ATPase PF06745.13 gi|332796403|ref|YP_004457903.1| - 0.14 11.5 0.0 0.28 10.5 0.0 1.4 2 0 0 2 2 2 0 KaiC Meth_synt_1 PF08267.12 gi|332796404|ref|YP_004457904.1| - 3.3e-24 86.0 3.2 7.9e-24 84.7 2.2 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|332796404|ref|YP_004457904.1| - 3.5e-05 23.3 0.0 9.9e-05 21.8 0.0 1.7 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain DFP PF04127.15 gi|332796404|ref|YP_004457904.1| - 0.096 12.5 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein PCNA_N PF00705.18 gi|332796405|ref|YP_004457905.1| - 5.1e-18 65.0 1.4 7.4e-16 58.0 0.1 2.3 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|332796405|ref|YP_004457905.1| - 3.6e-15 56.3 1.2 3.7e-12 46.5 0.2 2.4 2 1 0 2 2 2 2 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|332796405|ref|YP_004457905.1| - 3.6e-06 26.6 0.1 1.1e-05 25.0 0.1 1.7 2 1 0 2 2 2 1 Rad9 DNA_pol3_beta_3 PF02768.15 gi|332796405|ref|YP_004457905.1| - 5.8e-06 26.2 0.7 0.017 15.0 0.0 2.4 2 0 0 2 2 2 2 DNA polymerase III beta subunit, C-terminal domain Hus1 PF04005.12 gi|332796405|ref|YP_004457905.1| - 0.018 14.2 0.1 0.048 12.8 0.0 1.6 2 0 0 2 2 2 0 Hus1-like protein Chorein_N PF12624.7 gi|332796405|ref|YP_004457905.1| - 0.064 13.4 0.1 1.1 9.4 0.0 2.6 2 1 1 3 3 3 0 N-terminal region of Chorein or VPS13 GATase_3 PF07685.14 gi|332796406|ref|YP_004457906.1| - 4.8e-33 114.4 0.2 7.7e-33 113.7 0.2 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain AAA_26 PF13500.6 gi|332796406|ref|YP_004457906.1| - 2.3e-14 53.7 0.0 1.8e-08 34.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|332796406|ref|YP_004457906.1| - 2.6e-13 50.1 0.0 5.2e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain SNAP PF14938.6 gi|332796406|ref|YP_004457906.1| - 0.00044 19.8 0.2 0.00067 19.2 0.2 1.1 1 0 0 1 1 1 1 Soluble NSF attachment protein, SNAP DUF2208 PF09973.9 gi|332796407|ref|YP_004457907.1| - 3.3e-68 229.7 21.8 3.8e-68 229.6 21.8 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2208) TrbC PF04956.13 gi|332796407|ref|YP_004457907.1| - 0.054 13.7 0.3 0.96 9.7 0.0 2.4 2 0 0 2 2 2 0 TrbC/VIRB2 family DUF3792 PF12670.7 gi|332796407|ref|YP_004457907.1| - 0.8 9.9 13.9 0.67 10.1 3.9 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3792) NapE PF06796.11 gi|332796408|ref|YP_004457908.1| - 0.72 9.4 2.4 0.99 9.0 0.0 2.1 2 0 0 2 2 2 0 Periplasmic nitrate reductase protein NapE DHBP_synthase PF00926.19 gi|332796409|ref|YP_004457909.1| - 4e-45 153.7 0.0 4.7e-45 153.5 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase DMRL_synthase PF00885.19 gi|332796410|ref|YP_004457910.1| - 2.3e-11 43.7 0.1 2.7e-11 43.5 0.1 1.1 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase DMRL_synthase PF00885.19 gi|332796411|ref|YP_004457911.1| - 1.6e-35 122.0 0.2 1.8e-35 121.8 0.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase GCH_III PF05165.12 gi|332796412|ref|YP_004457912.1| - 1.8e-43 148.6 0.0 3.9e-43 147.5 0.0 1.4 1 1 0 1 1 1 1 GTP cyclohydrolase III mCpol PF18182.1 gi|332796412|ref|YP_004457912.1| - 4e-06 27.1 0.1 0.0024 18.2 0.1 2.2 2 0 0 2 2 2 2 minimal CRISPR polymerase domain DUF3085 PF11284.8 gi|332796412|ref|YP_004457912.1| - 0.11 12.8 0.1 0.24 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3085) Amidohydro_1 PF01979.20 gi|332796413|ref|YP_004457913.1| - 4.5e-21 75.5 0.0 1.2e-20 74.1 0.0 1.6 1 1 0 1 1 1 1 Amidohydrolase family PCNA_N PF00705.18 gi|332796414|ref|YP_004457914.1| - 1.7e-07 31.0 0.8 5.6e-07 29.3 0.2 2.0 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|332796414|ref|YP_004457914.1| - 9e-07 29.1 2.6 0.00034 20.8 0.3 3.0 1 1 2 3 3 3 2 Proliferating cell nuclear antigen, C-terminal domain GreA_GreB PF01272.19 gi|332796414|ref|YP_004457914.1| - 0.0092 15.9 0.9 0.054 13.4 0.2 2.3 2 0 0 2 2 2 1 Transcription elongation factor, GreA/GreB, C-term Rad9 PF04139.13 gi|332796414|ref|YP_004457914.1| - 0.014 14.9 0.1 0.024 14.1 0.1 1.3 1 1 0 1 1 1 0 Rad9 OapA PF04225.12 gi|332796414|ref|YP_004457914.1| - 0.11 12.6 0.6 4.2 7.5 0.0 2.4 2 0 0 2 2 2 0 Opacity-associated protein A LysM-like domain CsgF PF10614.9 gi|332796414|ref|YP_004457914.1| - 0.13 12.5 0.3 0.3 11.3 0.3 1.7 1 1 0 1 1 1 0 Type VIII secretion system (T8SS), CsgF protein RNA_pol_Rpo13 PF12136.8 gi|332796415|ref|YP_004457915.1| - 1.5e-09 37.6 22.0 1.5e-09 37.6 22.0 3.2 2 1 0 2 2 2 1 RNA polymerase Rpo13 subunit HTH domain PH_BEACH PF14844.6 gi|332796415|ref|YP_004457915.1| - 2.2 8.4 6.5 0.61 10.2 0.9 2.0 2 0 0 2 2 2 0 PH domain associated with Beige/BEACH DUF87 PF01935.17 gi|332796416|ref|YP_004457916.1| - 3.4e-07 30.6 3.1 3.2e-06 27.4 3.1 2.4 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|332796416|ref|YP_004457916.1| - 1.2e-05 24.4 0.2 0.016 14.1 0.0 2.5 2 1 1 3 3 3 2 AAA-like domain AAA_22 PF13401.6 gi|332796416|ref|YP_004457916.1| - 2.8e-05 24.4 0.0 0.22 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Pox_A32 PF04665.12 gi|332796416|ref|YP_004457916.1| - 0.0007 19.1 0.7 0.0025 17.3 0.1 2.0 2 0 0 2 2 2 1 Poxvirus A32 protein TrwB_AAD_bind PF10412.9 gi|332796416|ref|YP_004457916.1| - 0.0042 16.0 0.0 0.22 10.4 0.0 2.2 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|332796416|ref|YP_004457916.1| - 0.0064 16.2 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796416|ref|YP_004457916.1| - 0.0076 16.8 0.0 0.017 15.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|332796416|ref|YP_004457916.1| - 0.0087 15.8 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_7 PF12775.7 gi|332796416|ref|YP_004457916.1| - 0.022 14.3 0.0 0.051 13.1 0.0 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|332796416|ref|YP_004457916.1| - 0.022 15.2 0.0 0.041 14.4 0.0 1.4 1 0 0 1 1 1 0 ABC transporter FtsK_SpoIIIE PF01580.18 gi|332796416|ref|YP_004457916.1| - 0.052 12.9 0.0 0.086 12.2 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_29 PF13555.6 gi|332796416|ref|YP_004457916.1| - 0.054 13.2 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|332796416|ref|YP_004457916.1| - 0.059 13.5 0.0 0.098 12.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zot PF05707.12 gi|332796416|ref|YP_004457916.1| - 0.063 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) Hpr_kinase_C PF07475.12 gi|332796416|ref|YP_004457916.1| - 0.081 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 HPr Serine kinase C-terminal domain NB-ARC PF00931.22 gi|332796416|ref|YP_004457916.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|332796416|ref|YP_004457916.1| - 0.15 11.3 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Sigma54_activ_2 PF14532.6 gi|332796416|ref|YP_004457916.1| - 0.17 12.0 0.0 0.39 10.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain NACHT PF05729.12 gi|332796416|ref|YP_004457916.1| - 0.18 11.7 0.1 0.4 10.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain DEAD PF00270.29 gi|332796417|ref|YP_004457917.1| - 5e-33 114.3 0.4 3.5e-31 108.3 0.0 3.2 3 1 1 4 4 4 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332796417|ref|YP_004457917.1| - 3.5e-23 82.1 0.5 1.6e-18 67.0 0.4 3.1 2 1 0 2 2 2 2 Helicase conserved C-terminal domain DEAD_assoc PF08494.11 gi|332796417|ref|YP_004457917.1| - 9.9e-15 54.8 0.0 2.6e-14 53.5 0.0 1.7 2 0 0 2 2 2 1 DEAD/H associated ResIII PF04851.15 gi|332796417|ref|YP_004457917.1| - 3.8e-06 27.0 0.0 1.1e-05 25.5 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|332796417|ref|YP_004457917.1| - 5e-05 23.7 0.0 0.0043 17.4 0.0 2.6 2 0 0 2 2 2 1 AAA domain KOW PF00467.29 gi|332796418|ref|YP_004457918.1| - 9.4e-05 22.2 2.6 0.00011 22.0 1.4 1.7 2 0 0 2 2 2 1 KOW motif XisI PF08869.11 gi|332796418|ref|YP_004457918.1| - 0.0029 18.0 0.1 0.0034 17.7 0.1 1.1 1 0 0 1 1 1 1 XisI protein Ribosomal_L14e PF01929.17 gi|332796418|ref|YP_004457918.1| - 0.039 14.5 0.1 0.055 14.0 0.1 1.3 1 0 0 1 1 1 0 Ribosomal protein L14 DKCLD PF08068.12 gi|332796419|ref|YP_004457919.1| - 2.4e-14 53.1 0.0 3.2e-14 52.7 0.0 1.2 1 0 0 1 1 1 1 DKCLD (NUC011) domain TruB_N PF01509.18 gi|332796419|ref|YP_004457919.1| - 0.072 13.5 0.0 0.16 12.4 0.0 1.5 2 0 0 2 2 2 0 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|332796420|ref|YP_004457920.1| - 1e-22 80.0 0.1 1.7e-22 79.3 0.1 1.4 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|332796420|ref|YP_004457920.1| - 1.1e-15 57.3 0.2 1.8e-15 56.6 0.2 1.4 1 0 0 1 1 1 1 PUA domain TruB_N PF01509.18 gi|332796420|ref|YP_004457920.1| - 0.00022 21.6 0.0 0.0035 17.7 0.0 2.1 1 1 0 1 1 1 1 TruB family pseudouridylate synthase (N terminal domain) MTS PF05175.14 gi|332796421|ref|YP_004457921.1| - 2e-38 131.6 0.1 2.2e-38 131.4 0.1 1.0 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|332796421|ref|YP_004457921.1| - 1.6e-12 47.5 0.0 2e-12 47.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|332796421|ref|YP_004457921.1| - 3.8e-12 46.2 0.2 4.5e-12 46.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.7 gi|332796421|ref|YP_004457921.1| - 4.3e-11 43.0 0.0 7.8e-11 42.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332796421|ref|YP_004457921.1| - 1.3e-09 38.7 0.0 1.8e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332796421|ref|YP_004457921.1| - 1.7e-07 31.9 0.0 2.5e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|332796421|ref|YP_004457921.1| - 3.6e-07 30.1 0.1 6e-07 29.3 0.1 1.4 1 1 0 1 1 1 1 Lysine methyltransferase Methyltransf_15 PF09445.10 gi|332796421|ref|YP_004457921.1| - 4.4e-07 29.6 0.2 8.6e-07 28.7 0.1 1.5 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|332796421|ref|YP_004457921.1| - 4.5e-07 29.7 0.0 5.4e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 GidB PF02527.15 gi|332796421|ref|YP_004457921.1| - 1.8e-06 27.4 0.1 2.5e-06 26.9 0.1 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Methyltransf_11 PF08241.12 gi|332796421|ref|YP_004457921.1| - 3.5e-06 27.6 0.0 4.9e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|332796421|ref|YP_004457921.1| - 5.1e-06 26.4 0.1 6.8e-06 26.0 0.1 1.2 1 0 0 1 1 1 1 Met-10+ like-protein UPF0020 PF01170.18 gi|332796421|ref|YP_004457921.1| - 5.7e-05 22.9 0.1 9.3e-05 22.2 0.1 1.3 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_4 PF02390.17 gi|332796421|ref|YP_004457921.1| - 8.5e-05 22.1 0.3 0.0049 16.4 0.1 2.2 2 0 0 2 2 2 1 Putative methyltransferase CMAS PF02353.20 gi|332796421|ref|YP_004457921.1| - 0.00018 20.9 0.0 0.00021 20.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_23 PF13489.6 gi|332796421|ref|YP_004457921.1| - 0.00093 19.1 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TrmK PF04816.12 gi|332796421|ref|YP_004457921.1| - 0.0012 18.5 0.1 0.0019 17.8 0.1 1.3 1 0 0 1 1 1 1 tRNA (adenine(22)-N(1))-methyltransferase TehB PF03848.14 gi|332796421|ref|YP_004457921.1| - 0.0013 18.2 0.3 0.0023 17.4 0.2 1.5 1 1 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|332796421|ref|YP_004457921.1| - 0.0015 18.5 0.0 0.0019 18.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Dam PF05869.11 gi|332796421|ref|YP_004457921.1| - 0.0057 16.2 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 DNA N-6-adenine-methyltransferase (Dam) N6_Mtase PF02384.16 gi|332796421|ref|YP_004457921.1| - 0.0072 15.6 0.0 0.0096 15.2 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase rRNA_methylase PF06962.12 gi|332796421|ref|YP_004457921.1| - 0.014 15.4 0.1 2.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Putative rRNA methylase PRMT5 PF05185.16 gi|332796421|ref|YP_004457921.1| - 0.045 13.6 0.0 0.067 13.0 0.0 1.3 1 0 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltransf_10 PF05971.12 gi|332796421|ref|YP_004457921.1| - 0.046 13.0 0.0 0.062 12.6 0.0 1.2 1 0 0 1 1 1 0 RNA methyltransferase PCMT PF01135.19 gi|332796421|ref|YP_004457921.1| - 0.057 13.2 0.2 0.14 11.9 0.2 1.5 1 1 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_2 PF00891.18 gi|332796421|ref|YP_004457921.1| - 0.069 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase domain FAM219A PF15260.6 gi|332796422|ref|YP_004457922.1| - 0.013 15.9 1.8 0.032 14.6 1.8 1.6 1 0 0 1 1 1 0 Protein family FAM219A Ribosomal_S10 PF00338.22 gi|332796423|ref|YP_004457923.1| - 4.5e-27 94.1 0.1 5e-27 94.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e MetJ PF01340.20 gi|332796423|ref|YP_004457923.1| - 0.035 14.1 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Met Apo-repressor, MetJ GTP_EFTU PF00009.27 gi|332796424|ref|YP_004457924.1| - 6.1e-50 169.5 0.1 7.3e-50 169.2 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|332796424|ref|YP_004457924.1| - 5.8e-40 136.1 0.0 1.4e-39 134.9 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|332796424|ref|YP_004457924.1| - 6.3e-16 58.5 6.2 4.2e-15 55.9 2.2 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|332796424|ref|YP_004457924.1| - 0.00014 21.9 0.1 0.00058 19.9 0.1 2.1 1 1 0 1 1 1 1 50S ribosome-binding GTPase Septin PF00735.18 gi|332796424|ref|YP_004457924.1| - 0.0096 15.2 0.1 0.041 13.2 0.1 1.8 1 1 0 1 1 1 1 Septin SRPRB PF09439.10 gi|332796424|ref|YP_004457924.1| - 0.011 15.2 0.0 1.5 8.3 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.6 gi|332796424|ref|YP_004457924.1| - 0.018 15.0 3.6 0.022 14.6 0.6 2.5 3 0 0 3 3 3 0 Elongation factor Tu domain 4 Dynamin_N PF00350.23 gi|332796424|ref|YP_004457924.1| - 0.05 13.7 0.1 4.3 7.4 0.0 2.4 1 1 1 2 2 2 0 Dynamin family TetR_C_2 PF08361.11 gi|332796424|ref|YP_004457924.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region Ribosomal_S7 PF00177.21 gi|332796425|ref|YP_004457925.1| - 7e-45 152.3 0.3 8.6e-45 152.0 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF1801 PF08818.11 gi|332796425|ref|YP_004457925.1| - 0.045 14.2 0.0 0.14 12.7 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DU1801) DNase-RNase PF02577.14 gi|332796426|ref|YP_004457926.1| - 1.1e-08 34.8 0.2 1.4e-08 34.5 0.2 1.2 1 0 0 1 1 1 1 Bifunctional nuclease Ribosom_S12_S23 PF00164.25 gi|332796427|ref|YP_004457927.1| - 1.9e-48 162.8 0.2 2.4e-48 162.5 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|332796428|ref|YP_004457928.1| - 1.6e-18 66.3 2.5 4.9e-13 48.7 0.1 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|332796428|ref|YP_004457928.1| - 5.6e-14 52.0 1.9 2.1e-13 50.2 0.3 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|332796428|ref|YP_004457928.1| - 2.2e-11 43.4 0.2 2.2e-06 27.4 0.1 2.1 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|332796428|ref|YP_004457928.1| - 5.5e-05 22.9 0.8 0.0033 17.2 0.1 2.4 1 1 1 2 2 2 2 KH domain Ribosomal_L7Ae PF01248.26 gi|332796429|ref|YP_004457929.1| - 6.2e-18 64.3 0.0 7.6e-18 64.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family eRF1_3 PF03465.15 gi|332796429|ref|YP_004457929.1| - 0.072 13.6 0.0 0.072 13.6 0.0 1.1 1 0 0 1 1 1 0 eRF1 domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|332796430|ref|YP_004457930.1| - 3e-59 200.6 2.6 4.4e-59 200.1 2.6 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 BET PF17035.5 gi|332796430|ref|YP_004457930.1| - 0.73 10.0 3.6 0.54 10.5 0.7 2.3 2 0 0 2 2 2 0 Bromodomain extra-terminal - transcription regulation RNA_pol_Rpb1_1 PF04997.12 gi|332796431|ref|YP_004457931.1| - 4.8e-101 338.2 0.0 7.2e-101 337.6 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|332796431|ref|YP_004457931.1| - 4.1e-75 251.6 0.0 8.9e-75 250.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_3 PF04983.18 gi|332796431|ref|YP_004457931.1| - 1.6e-38 132.1 0.0 3.2e-38 131.1 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_4 PF05000.17 gi|332796431|ref|YP_004457931.1| - 8.5e-33 112.5 0.0 1.8e-32 111.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.17 gi|332796431|ref|YP_004457931.1| - 4.3e-24 85.4 0.1 1.2e-23 83.9 0.1 1.8 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HypA PF01155.19 gi|332796431|ref|YP_004457931.1| - 0.037 14.0 1.6 1.8 8.6 0.1 3.1 3 0 0 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|332796431|ref|YP_004457931.1| - 0.068 13.3 2.7 2.7 8.2 0.1 3.2 3 0 0 3 3 3 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|332796431|ref|YP_004457931.1| - 0.14 12.2 6.0 0.83 9.7 0.0 3.1 3 0 0 3 3 3 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332796431|ref|YP_004457931.1| - 0.16 11.4 6.7 0.89 9.1 0.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain CpXC PF14353.6 gi|332796431|ref|YP_004457931.1| - 0.19 11.8 2.3 1.6 8.8 0.0 2.8 1 1 1 2 2 2 0 CpXC protein zf-ISL3 PF14690.6 gi|332796431|ref|YP_004457931.1| - 1.7 9.4 9.0 3.3 8.5 0.1 3.4 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-FPG_IleRS PF06827.14 gi|332796431|ref|YP_004457931.1| - 2.6 8.0 7.9 15 5.6 0.4 3.4 3 0 0 3 3 3 0 Zinc finger found in FPG and IleRS DUF35_N PF12172.8 gi|332796431|ref|YP_004457931.1| - 4.5 7.2 10.7 7.2 6.6 0.1 3.4 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.6 gi|332796431|ref|YP_004457931.1| - 7.3 7.1 5.2 3.9 7.9 0.1 2.7 2 1 0 2 2 2 0 Restriction alleviation protein Lar RNA_pol_Rpb2_6 PF00562.28 gi|332796432|ref|YP_004457932.1| - 1e-128 429.8 0.0 1.4e-128 429.3 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_1 PF04563.15 gi|332796432|ref|YP_004457932.1| - 1.8e-58 197.4 0.0 2.6e-58 196.9 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|332796432|ref|YP_004457932.1| - 2.3e-39 135.0 0.0 5.3e-39 133.8 0.0 1.6 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_7 PF04560.20 gi|332796432|ref|YP_004457932.1| - 2.3e-31 108.0 0.0 4.3e-31 107.2 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_3 PF04565.16 gi|332796432|ref|YP_004457932.1| - 8.6e-25 86.7 0.0 1.9e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_4 PF04566.13 gi|332796432|ref|YP_004457932.1| - 6.4e-20 71.2 0.4 1.5e-19 70.0 0.4 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|332796432|ref|YP_004457932.1| - 1.5e-08 35.0 0.5 4.2e-08 33.6 0.0 2.1 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 5 zinc_ribbon_13 PF09855.9 gi|332796432|ref|YP_004457932.1| - 0.21 11.8 0.7 7.5 6.8 0.8 2.7 3 0 0 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) RNA_pol_Rpb5_C PF01191.19 gi|332796433|ref|YP_004457933.1| - 1.5e-30 104.8 0.2 1.7e-30 104.7 0.2 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain malic PF00390.19 gi|332796434|ref|YP_004457934.1| - 4.2e-28 98.4 0.1 3.1e-19 69.5 0.1 2.6 1 1 1 2 2 2 2 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|332796434|ref|YP_004457934.1| - 4.9e-20 71.9 0.1 1.4e-18 67.1 0.1 2.2 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain GTP_EFTU_D4 PF14578.6 gi|332796435|ref|YP_004457935.1| - 1.1e-38 130.9 2.4 3.4e-38 129.4 2.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU PF00009.27 gi|332796435|ref|YP_004457935.1| - 1.1e-31 109.9 0.0 4.2e-31 108.0 0.0 2.0 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain IF-2 PF11987.8 gi|332796435|ref|YP_004457935.1| - 1.2e-13 51.1 1.7 1.2e-13 51.1 1.7 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|332796435|ref|YP_004457935.1| - 3.1e-10 40.3 4.9 4.5e-10 39.8 0.1 3.1 3 0 0 3 3 3 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|332796435|ref|YP_004457935.1| - 2.7e-07 30.7 0.3 3.1e-06 27.2 0.0 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase Roc PF08477.13 gi|332796435|ref|YP_004457935.1| - 0.00023 21.4 0.0 0.0005 20.3 0.0 1.6 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase Dynamin_N PF00350.23 gi|332796435|ref|YP_004457935.1| - 0.0089 16.1 0.6 0.19 11.8 0.0 3.1 4 0 0 4 4 4 1 Dynamin family Ras PF00071.22 gi|332796435|ref|YP_004457935.1| - 0.012 15.3 0.0 0.062 12.9 0.0 2.1 1 1 0 1 1 1 0 Ras family Arf PF00025.21 gi|332796435|ref|YP_004457935.1| - 0.016 14.7 0.1 6.9 6.1 0.0 2.9 2 1 0 2 2 2 0 ADP-ribosylation factor family STAS PF01740.21 gi|332796435|ref|YP_004457935.1| - 0.022 14.4 0.0 0.17 11.5 0.0 2.3 2 0 0 2 2 2 0 STAS domain PduV-EutP PF10662.9 gi|332796435|ref|YP_004457935.1| - 0.028 14.1 0.5 1.1 9.0 0.0 3.1 3 1 1 4 4 4 0 Ethanolamine utilisation - propanediol utilisation MobB PF03205.14 gi|332796435|ref|YP_004457935.1| - 0.06 13.3 0.3 7 6.5 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Peripla_BP_4 PF13407.6 gi|332796435|ref|YP_004457935.1| - 0.12 12.0 0.1 0.29 10.7 0.0 1.7 2 0 0 2 2 2 0 Periplasmic binding protein domain RsgA_GTPase PF03193.16 gi|332796435|ref|YP_004457935.1| - 0.13 12.2 0.0 7.2 6.5 0.0 2.9 2 1 1 3 3 3 0 RsgA GTPase SSPI PF14098.6 gi|332796435|ref|YP_004457935.1| - 0.24 11.6 0.2 0.24 11.6 0.2 2.5 3 0 0 3 3 3 0 Small, acid-soluble spore protein I SRPRB PF09439.10 gi|332796435|ref|YP_004457935.1| - 1.9 7.9 4.7 0.85 9.0 0.1 2.8 3 1 0 3 3 3 0 Signal recognition particle receptor beta subunit NDK PF00334.19 gi|332796436|ref|YP_004457936.1| - 5.9e-58 194.7 0.1 6.5e-58 194.5 0.1 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.20 gi|332796437|ref|YP_004457937.1| - 3.3e-21 75.3 1.9 3.5e-21 75.2 1.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|332796437|ref|YP_004457937.1| - 1.2e-05 25.2 1.5 1.7e-05 24.7 1.5 1.3 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif zf-FLZ PF04570.14 gi|332796437|ref|YP_004457937.1| - 0.00043 19.7 1.1 0.00087 18.7 1.1 1.5 1 1 0 1 1 1 1 zinc-finger of the FCS-type, C2-C2 zf-MYND PF01753.18 gi|332796437|ref|YP_004457937.1| - 0.00072 19.6 0.0 0.0014 18.7 0.0 1.5 1 1 0 1 1 1 1 MYND finger DUF2175 PF09943.9 gi|332796437|ref|YP_004457937.1| - 0.015 15.6 0.4 0.015 15.6 0.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2175) YHS PF04945.13 gi|332796437|ref|YP_004457937.1| - 0.029 14.5 0.1 0.05 13.7 0.0 1.5 1 1 0 1 1 1 0 YHS domain DUF3268 PF11672.8 gi|332796437|ref|YP_004457937.1| - 0.044 14.1 0.4 0.047 14.0 0.4 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zf-C4_ClpX PF06689.13 gi|332796437|ref|YP_004457937.1| - 0.063 13.2 0.0 0.063 13.2 0.0 1.5 2 0 0 2 2 2 0 ClpX C4-type zinc finger DUF2116 PF09889.9 gi|332796437|ref|YP_004457937.1| - 0.078 13.0 1.7 1.6 8.8 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_S28e PF01200.18 gi|332796438|ref|YP_004457938.1| - 2.1e-30 104.5 2.5 2.5e-30 104.2 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S28e KOW PF00467.29 gi|332796438|ref|YP_004457938.1| - 0.2 11.7 2.4 0.63 10.1 0.1 2.5 2 1 0 2 2 2 0 KOW motif UPRTase PF14681.6 gi|332796439|ref|YP_004457939.1| - 2.7e-47 160.9 0.0 3.1e-47 160.7 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|332796439|ref|YP_004457939.1| - 4.6e-08 32.8 0.1 6.4e-08 32.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain dCMP_cyt_deam_1 PF00383.23 gi|332796440|ref|YP_004457940.1| - 6.4e-19 67.7 0.1 8.4e-19 67.3 0.1 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|332796440|ref|YP_004457940.1| - 8.5e-14 51.9 0.3 2.3e-13 50.5 0.0 1.7 2 0 0 2 2 2 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|332796440|ref|YP_004457940.1| - 0.00019 21.1 0.4 0.1 12.2 0.0 2.1 1 1 1 2 2 2 2 A distinct subfamily of CDD/CDA-like deaminases Ufm1 PF03671.14 gi|332796440|ref|YP_004457940.1| - 0.0028 17.7 0.1 0.015 15.3 0.0 2.0 2 0 0 2 2 2 1 Ubiquitin fold modifier 1 protein DUF678 PF05077.12 gi|332796440|ref|YP_004457940.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF678) GatB_N PF02934.15 gi|332796441|ref|YP_004457941.1| - 2.2e-102 342.1 0.0 3.1e-102 341.6 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|332796441|ref|YP_004457941.1| - 3.8e-43 146.9 6.1 9.1e-43 145.7 6.1 1.7 1 0 0 1 1 1 1 GatB domain Pribosyltran PF00156.27 gi|332796442|ref|YP_004457942.1| - 2.7e-15 56.2 0.2 4.5e-15 55.5 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|332796442|ref|YP_004457942.1| - 0.00022 20.8 0.1 0.00035 20.1 0.1 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|332796442|ref|YP_004457942.1| - 0.017 14.6 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl transferase RibD_C PF01872.17 gi|332796444|ref|YP_004457944.1| - 7.1e-44 150.0 0.0 7.9e-44 149.9 0.0 1.0 1 0 0 1 1 1 1 RibD C-terminal domain Radical_SAM PF04055.21 gi|332796445|ref|YP_004457945.1| - 1.1e-18 68.1 4.3 1.4e-18 67.8 0.0 2.6 3 0 0 3 3 3 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|332796445|ref|YP_004457945.1| - 4.4e-07 30.1 1.5 8.1e-07 29.2 0.0 2.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|332796445|ref|YP_004457945.1| - 7.8e-06 26.2 0.7 2.3e-05 24.7 0.7 1.8 1 1 0 1 1 1 1 4Fe-4S single cluster domain Peptidase_S13 PF02113.15 gi|332796445|ref|YP_004457945.1| - 0.064 12.0 0.0 0.24 10.1 0.0 1.8 2 0 0 2 2 2 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family AIRS PF00586.24 gi|332796446|ref|YP_004457946.1| - 4.7e-11 43.2 0.0 7.8e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Lyase_1 PF00206.20 gi|332796447|ref|YP_004457947.1| - 8.8e-51 173.1 0.0 1.3e-50 172.6 0.0 1.2 1 0 0 1 1 1 1 Lyase ADSL_C PF10397.9 gi|332796447|ref|YP_004457947.1| - 5.7e-14 52.4 0.0 1.7e-13 50.9 0.0 1.9 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminus ASL_C PF08328.11 gi|332796447|ref|YP_004457947.1| - 0.001 19.2 0.2 0.0023 18.0 0.2 1.7 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal ASL_C2 PF14698.6 gi|332796447|ref|YP_004457947.1| - 0.0034 18.1 0.0 0.019 15.7 0.0 2.2 2 0 0 2 2 2 1 Argininosuccinate lyase C-terminal COX3 PF00510.18 gi|332796447|ref|YP_004457947.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Cytochrome c oxidase subunit III DUF1297 PF06973.12 gi|332796448|ref|YP_004457948.1| - 1.2e-74 249.9 0.1 1.7e-74 249.4 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|332796448|ref|YP_004457948.1| - 8e-42 142.1 0.0 1.2e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) GARS_A PF01071.19 gi|332796448|ref|YP_004457948.1| - 0.0026 17.6 0.0 0.0048 16.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CPSase_L_D2 PF02786.17 gi|332796448|ref|YP_004457948.1| - 0.02 14.4 0.0 0.037 13.5 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|332796448|ref|YP_004457948.1| - 0.12 11.9 0.4 2.4 7.7 0.1 2.1 2 0 0 2 2 2 0 ATP-grasp domain DUF1297 PF06973.12 gi|332796449|ref|YP_004457949.1| - 1.4e-78 262.8 0.0 1.9e-78 262.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1297) DUF1246 PF06849.12 gi|332796449|ref|YP_004457949.1| - 3.5e-49 165.8 0.0 5.7e-49 165.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1246) ABC_membrane_2 PF06472.15 gi|332796449|ref|YP_004457949.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 ABC transporter transmembrane region 2 Adenylsucc_synt PF00709.21 gi|332796450|ref|YP_004457950.1| - 8.5e-69 232.5 0.4 1.4e-36 126.3 0.0 3.0 1 1 2 3 3 3 3 Adenylosuccinate synthetase Pyr_redox_2 PF07992.14 gi|332796451|ref|YP_004457951.1| - 9.5e-15 54.6 0.7 4.7e-06 26.1 0.0 3.1 3 0 0 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332796451|ref|YP_004457951.1| - 3.5e-11 42.9 1.7 7.7e-06 25.4 0.0 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332796451|ref|YP_004457951.1| - 7.8e-11 41.3 0.0 7e-05 21.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|332796451|ref|YP_004457951.1| - 4.1e-09 36.5 0.0 4.4e-06 26.5 0.0 2.6 2 1 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|332796451|ref|YP_004457951.1| - 8.8e-08 31.6 0.2 0.0025 17.0 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|332796451|ref|YP_004457951.1| - 2.7e-05 24.3 0.1 0.00013 22.1 0.1 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|332796451|ref|YP_004457951.1| - 7.7e-05 21.9 1.0 0.00047 19.4 0.1 2.4 3 0 0 3 3 3 1 FAD binding domain Trp_halogenase PF04820.14 gi|332796451|ref|YP_004457951.1| - 0.0004 19.4 0.1 0.0014 17.5 0.0 1.8 2 0 0 2 2 2 1 Tryptophan halogenase Thi4 PF01946.17 gi|332796451|ref|YP_004457951.1| - 0.00051 19.4 0.5 0.0017 17.7 0.1 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|332796451|ref|YP_004457951.1| - 0.0012 18.2 0.0 0.0023 17.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|332796451|ref|YP_004457951.1| - 0.0018 17.4 0.0 0.0074 15.4 0.1 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|332796451|ref|YP_004457951.1| - 0.0029 17.6 0.0 0.012 15.6 0.0 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox PF00070.27 gi|332796451|ref|YP_004457951.1| - 0.01 16.3 0.7 6.9 7.3 0.1 2.9 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|332796451|ref|YP_004457951.1| - 0.047 13.0 0.1 0.076 12.4 0.1 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase AsnC_trans_reg2 PF17805.1 gi|332796452|ref|YP_004457952.1| - 4.2e-33 113.3 0.5 3.7e-15 55.8 0.1 2.7 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|332796452|ref|YP_004457952.1| - 1.2e-10 41.0 0.0 1.2e-07 31.5 0.0 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|332796452|ref|YP_004457952.1| - 5.9e-05 22.5 0.4 0.16 11.6 0.0 3.3 4 0 0 4 4 4 2 Winged helix-turn-helix DNA-binding DDRGK PF09756.9 gi|332796452|ref|YP_004457952.1| - 0.02 14.5 0.3 4.2 6.9 0.1 2.4 2 0 0 2 2 2 0 DDRGK domain HTH_Tnp_ISL3 PF13542.6 gi|332796452|ref|YP_004457952.1| - 0.03 13.7 0.0 13 5.3 0.0 3.3 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 gi|332796452|ref|YP_004457952.1| - 0.042 13.4 0.0 5.3 6.7 0.0 3.2 2 1 1 3 3 3 0 Sigma-70, region 4 DUF2805 PF10985.8 gi|332796452|ref|YP_004457952.1| - 0.045 14.1 0.1 8.5 6.8 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2805) DUF3991 PF13154.6 gi|332796452|ref|YP_004457952.1| - 0.051 14.0 0.1 0.16 12.3 0.1 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3991) DUF4840 PF16128.5 gi|332796452|ref|YP_004457952.1| - 0.054 13.6 0.7 0.31 11.1 0.4 2.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4840) Ldh_1_C PF02866.18 gi|332796452|ref|YP_004457952.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain HTH_Crp_2 PF13545.6 gi|332796452|ref|YP_004457952.1| - 0.16 12.0 0.0 4.9 7.2 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain IF2_N PF04760.15 gi|332796452|ref|YP_004457952.1| - 6.9 6.6 7.6 5.1 7.0 1.5 3.5 3 1 0 3 3 3 0 Translation initiation factor IF-2, N-terminal region PDT PF00800.18 gi|332796453|ref|YP_004457953.1| - 1.2e-33 116.4 0.1 1.6e-33 116.1 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|332796453|ref|YP_004457953.1| - 0.023 14.4 0.0 0.065 13.0 0.0 1.8 1 0 0 1 1 1 0 ACT domain PALP PF00291.25 gi|332796454|ref|YP_004457954.1| - 1.9e-84 283.5 0.0 2.4e-84 283.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|332796454|ref|YP_004457954.1| - 0.0025 17.5 0.0 0.0081 15.9 0.0 1.9 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|332796454|ref|YP_004457954.1| - 0.0035 17.9 0.5 0.014 15.9 0.1 2.2 2 0 0 2 2 2 1 ACT domain ACT_6 PF13740.6 gi|332796454|ref|YP_004457954.1| - 0.047 13.7 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 ACT domain HIT PF01230.23 gi|332796455|ref|YP_004457955.1| - 1.2e-14 54.8 0.0 1.8e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|332796455|ref|YP_004457955.1| - 1.3e-07 31.5 0.2 2.8e-07 30.4 0.2 1.6 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|332796455|ref|YP_004457955.1| - 3.1e-07 30.9 0.1 5.8e-07 30.0 0.0 1.5 2 0 0 2 2 2 1 Scavenger mRNA decapping enzyme C-term binding tRNA-Thr_ED PF08915.11 gi|332796455|ref|YP_004457955.1| - 0.034 14.2 0.0 0.055 13.5 0.0 1.3 1 0 0 1 1 1 0 Archaea-specific editing domain of threonyl-tRNA synthetase GalP_UDP_tr_C PF02744.17 gi|332796455|ref|YP_004457955.1| - 0.069 12.9 0.0 0.081 12.7 0.0 1.1 1 0 0 1 1 1 0 Galactose-1-phosphate uridyl transferase, C-terminal domain Rad51 PF08423.11 gi|332796456|ref|YP_004457956.1| - 1.5e-87 293.1 0.1 1.7e-87 292.9 0.1 1.0 1 0 0 1 1 1 1 Rad51 RecA PF00154.21 gi|332796456|ref|YP_004457956.1| - 1.4e-14 54.2 0.2 2e-14 53.7 0.2 1.2 1 0 0 1 1 1 1 recA bacterial DNA recombination protein HHH_5 PF14520.6 gi|332796456|ref|YP_004457956.1| - 2e-08 34.7 1.0 1.4e-07 32.0 0.2 2.7 3 0 0 3 3 3 1 Helix-hairpin-helix domain AAA_25 PF13481.6 gi|332796456|ref|YP_004457956.1| - 2.6e-08 33.7 0.0 4.1e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATPase PF06745.13 gi|332796456|ref|YP_004457956.1| - 2e-07 30.6 0.2 4.2e-07 29.6 0.2 1.5 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|332796456|ref|YP_004457956.1| - 0.0041 16.9 0.0 0.011 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796456|ref|YP_004457956.1| - 0.03 14.9 0.0 0.06 13.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain UPF0113 PF03657.13 gi|332796457|ref|YP_004457957.1| - 4.7e-07 30.0 0.5 1.2e-06 28.7 0.5 1.7 1 1 0 1 1 1 1 UPF0113 PUA domain Methyltr_RsmB-F PF01189.17 gi|332796458|ref|YP_004457958.1| - 4.1e-53 180.0 0.0 5.3e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|332796458|ref|YP_004457958.1| - 1.1e-18 67.5 0.0 2.9e-18 66.1 0.0 1.7 1 0 0 1 1 1 1 N-terminal domain of 16S rRNA methyltransferase RsmF Methyltransf_31 PF13847.6 gi|332796458|ref|YP_004457958.1| - 3.9e-09 36.5 0.0 5.9e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|332796458|ref|YP_004457958.1| - 0.00015 21.9 0.0 0.00024 21.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|332796458|ref|YP_004457958.1| - 0.00049 19.6 0.0 0.003 17.1 0.0 2.0 2 0 0 2 2 2 1 Putative methyltransferase PCMT PF01135.19 gi|332796458|ref|YP_004457958.1| - 0.00068 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|332796458|ref|YP_004457958.1| - 0.0071 17.0 0.0 0.022 15.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|332796458|ref|YP_004457958.1| - 0.14 11.5 0.0 1.2 8.4 0.0 2.2 3 0 0 3 3 3 0 ubiE/COQ5 methyltransferase family Cons_hypoth95 PF03602.15 gi|332796458|ref|YP_004457958.1| - 0.17 11.5 0.0 0.27 10.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CYTH PF01928.21 gi|332796459|ref|YP_004457959.1| - 1.9e-30 106.1 1.5 2.4e-30 105.8 1.5 1.0 1 0 0 1 1 1 1 CYTH domain SAM_adeno_trans PF01887.16 gi|332796460|ref|YP_004457960.1| - 4e-60 203.2 0.0 4.5e-60 203.0 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|332796461|ref|YP_004457961.1| - 2.1e-20 73.4 0.0 3.1e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|332796461|ref|YP_004457961.1| - 0.11 12.2 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.11 gi|332796461|ref|YP_004457961.1| - 0.14 11.3 0.0 8.5 5.5 0.0 2.0 2 0 0 2 2 2 0 HIGH Nucleotidyl Transferase 4HBT PF03061.22 gi|332796462|ref|YP_004457962.1| - 5.2e-24 84.4 0.0 2.4e-12 47.0 0.0 2.2 2 0 0 2 2 2 2 Thioesterase superfamily DUF1667 PF07892.11 gi|332796462|ref|YP_004457962.1| - 0.1 12.6 0.1 0.64 10.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1667) DUF99 PF01949.16 gi|332796463|ref|YP_004457963.1| - 4.4e-16 58.8 0.2 1.7e-15 56.9 0.2 1.7 1 1 0 1 1 1 1 Protein of unknown function DUF99 Cdc6_C PF09079.11 gi|332796464|ref|YP_004457964.1| - 1.9e-21 75.8 0.5 6.2e-21 74.2 0.5 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|332796464|ref|YP_004457964.1| - 1.3e-15 57.9 0.0 7.1e-15 55.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|332796464|ref|YP_004457964.1| - 1e-11 45.5 0.2 9.2e-10 39.2 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|332796464|ref|YP_004457964.1| - 1.9e-10 41.3 0.1 5.5e-10 39.8 0.1 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|332796464|ref|YP_004457964.1| - 1.3e-07 31.3 0.1 2.5e-07 30.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial TniB protein NB-ARC PF00931.22 gi|332796464|ref|YP_004457964.1| - 1.3e-06 27.8 0.0 3.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 NB-ARC domain ATPase_2 PF01637.18 gi|332796464|ref|YP_004457964.1| - 2.5e-06 27.6 4.0 9.4e-06 25.7 3.9 1.9 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea PIF1 PF05970.14 gi|332796464|ref|YP_004457964.1| - 3.2e-05 23.3 0.0 5.3e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 PIF1-like helicase DUF815 PF05673.13 gi|332796464|ref|YP_004457964.1| - 3.8e-05 23.0 0.0 7.3e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_assoc_2 PF16193.5 gi|332796464|ref|YP_004457964.1| - 8.1e-05 22.9 0.2 0.00027 21.2 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain Bac_DnaA PF00308.18 gi|332796464|ref|YP_004457964.1| - 0.0004 20.3 1.7 0.0027 17.6 1.7 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein DEAD PF00270.29 gi|332796464|ref|YP_004457964.1| - 0.00054 19.8 0.2 0.98 9.2 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|332796464|ref|YP_004457964.1| - 0.00094 19.2 0.1 0.0015 18.5 0.1 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit TsaE PF02367.17 gi|332796464|ref|YP_004457964.1| - 0.0012 18.8 0.0 0.0024 17.9 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_32 PF13654.6 gi|332796464|ref|YP_004457964.1| - 0.0017 17.2 1.6 0.051 12.4 0.1 2.2 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|332796464|ref|YP_004457964.1| - 0.0019 17.9 0.0 0.0042 16.8 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain E2F_TDP PF02319.20 gi|332796464|ref|YP_004457964.1| - 0.0022 18.0 0.8 0.26 11.3 0.1 2.7 2 0 0 2 2 2 1 E2F/DP family winged-helix DNA-binding domain DUF2075 PF09848.9 gi|332796464|ref|YP_004457964.1| - 0.0034 16.7 0.0 0.0047 16.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.6 gi|332796464|ref|YP_004457964.1| - 0.0037 17.3 0.3 0.0089 16.1 0.3 1.7 1 0 0 1 1 1 1 AAA domain AAA_lid_10 PF17872.1 gi|332796464|ref|YP_004457964.1| - 0.0062 16.6 0.1 0.021 15.0 0.1 1.9 1 0 0 1 1 1 1 AAA lid domain AAA_7 PF12775.7 gi|332796464|ref|YP_004457964.1| - 0.011 15.2 0.0 0.02 14.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Torsin PF06309.11 gi|332796464|ref|YP_004457964.1| - 0.012 15.7 0.0 0.03 14.4 0.0 1.7 1 0 0 1 1 1 0 Torsin Pox_A32 PF04665.12 gi|332796464|ref|YP_004457964.1| - 0.023 14.2 0.7 0.047 13.2 0.7 1.5 1 1 0 1 1 1 0 Poxvirus A32 protein MutS_III PF05192.18 gi|332796464|ref|YP_004457964.1| - 0.035 14.3 0.6 0.062 13.5 0.6 1.7 1 1 0 1 1 1 0 MutS domain III RuvB_N PF05496.12 gi|332796464|ref|YP_004457964.1| - 0.062 13.0 0.8 0.49 10.1 0.0 2.7 3 2 1 4 4 4 0 Holliday junction DNA helicase RuvB P-loop domain RNA_helicase PF00910.22 gi|332796464|ref|YP_004457964.1| - 0.062 13.7 0.0 0.16 12.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|332796464|ref|YP_004457964.1| - 0.12 12.9 0.5 0.51 10.9 0.5 2.2 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.14 gi|332796464|ref|YP_004457964.1| - 0.33 10.2 4.8 3.8 6.7 0.0 2.5 2 1 1 3 3 3 0 KAP family P-loop domain Cytidylate_kin PF02224.18 gi|332796464|ref|YP_004457964.1| - 1.2 8.8 5.4 2.4 7.8 1.1 3.1 3 1 0 3 3 3 0 Cytidylate kinase DUF1743 PF08489.11 gi|332796465|ref|YP_004457965.1| - 4e-36 123.6 0.0 7.1e-36 122.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) OrfB_Zn_ribbon PF07282.11 gi|332796465|ref|YP_004457965.1| - 0.003 17.4 1.7 0.006 16.5 1.7 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain C1_2 PF03107.16 gi|332796465|ref|YP_004457965.1| - 0.0033 17.7 1.6 0.0062 16.8 1.6 1.4 1 0 0 1 1 1 1 C1 domain Zn-ribbon_8 PF09723.10 gi|332796465|ref|YP_004457965.1| - 0.0084 16.2 1.6 1 9.5 0.5 2.4 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|332796465|ref|YP_004457965.1| - 0.037 13.5 1.1 0.099 12.2 1.1 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|332796465|ref|YP_004457965.1| - 0.072 13.1 3.4 0.12 12.3 3.4 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|332796465|ref|YP_004457965.1| - 0.088 12.5 3.1 0.25 11.0 3.1 1.8 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-Mss51 PF13824.6 gi|332796465|ref|YP_004457965.1| - 0.38 10.9 2.7 0.61 10.2 1.2 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_4 PF13894.6 gi|332796465|ref|YP_004457965.1| - 1.1 10.3 2.9 19 6.4 0.3 2.9 2 0 0 2 2 2 0 C2H2-type zinc finger UPF0547 PF10571.9 gi|332796465|ref|YP_004457965.1| - 2.4 8.3 4.7 18 5.6 0.3 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-H2C2_2 PF13465.6 gi|332796465|ref|YP_004457965.1| - 2.6 8.6 7.2 0.25 11.9 1.1 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Rubredoxin_2 PF18073.1 gi|332796465|ref|YP_004457965.1| - 5.9 6.7 6.2 2.2 8.1 1.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|332796465|ref|YP_004457965.1| - 6.7 6.3 6.6 88 2.7 6.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain AsnC_trans_reg PF01037.21 gi|332796466|ref|YP_004457966.1| - 2.4e-18 65.8 0.2 2.8e-18 65.6 0.2 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|332796466|ref|YP_004457966.1| - 0.00057 19.8 0.0 0.00064 19.6 0.0 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|332796466|ref|YP_004457966.1| - 0.037 14.1 0.1 0.058 13.5 0.1 1.4 1 1 0 1 1 1 0 NapD protein Ribo_biogen_C PF04034.13 gi|332796467|ref|YP_004457967.1| - 1.8e-40 137.6 0.0 2.1e-40 137.4 0.0 1.0 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal CBS PF00571.28 gi|332796468|ref|YP_004457968.1| - 8.6e-19 67.7 2.4 2.8e-10 40.5 0.4 2.2 2 0 0 2 2 2 2 CBS domain HTH_3 PF01381.22 gi|332796468|ref|YP_004457968.1| - 9.8e-14 51.2 0.2 3.9e-13 49.2 0.2 2.0 1 1 1 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|332796468|ref|YP_004457968.1| - 7e-13 48.4 1.0 5.3e-12 45.6 0.2 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|332796468|ref|YP_004457968.1| - 1.4e-10 41.4 0.0 2e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|332796468|ref|YP_004457968.1| - 0.00018 21.4 0.1 0.00076 19.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|332796468|ref|YP_004457968.1| - 0.00035 20.4 0.0 0.0011 18.7 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|332796468|ref|YP_004457968.1| - 0.0029 18.0 0.1 0.006 17.0 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain Sigma70_r4 PF04545.16 gi|332796468|ref|YP_004457968.1| - 0.0038 16.7 0.0 0.0077 15.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|332796468|ref|YP_004457968.1| - 0.0078 15.8 0.1 0.028 14.0 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332796468|ref|YP_004457968.1| - 0.011 15.6 0.0 0.044 13.7 0.0 2.0 1 0 0 1 1 1 0 MarR family MqsA_antitoxin PF15731.5 gi|332796468|ref|YP_004457968.1| - 0.027 14.6 0.0 0.041 14.0 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA Bunya_RdRp PF04196.12 gi|332796468|ref|YP_004457968.1| - 0.033 12.6 1.1 0.04 12.3 1.1 1.1 1 0 0 1 1 1 0 Bunyavirus RNA dependent RNA polymerase HTH_38 PF13936.6 gi|332796468|ref|YP_004457968.1| - 0.047 13.5 0.1 0.083 12.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|332796468|ref|YP_004457968.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|332796468|ref|YP_004457968.1| - 0.085 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Phage_CII PF05269.11 gi|332796468|ref|YP_004457968.1| - 0.13 12.5 0.0 0.24 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CII protein HTH_AsnC-type PF13404.6 gi|332796468|ref|YP_004457968.1| - 0.17 11.7 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sec61_beta PF03911.16 gi|332796469|ref|YP_004457969.1| - 4.7e-16 58.5 0.6 5.3e-16 58.4 0.6 1.1 1 0 0 1 1 1 1 Sec61beta family PcrB PF01884.17 gi|332796470|ref|YP_004457970.1| - 1.9e-53 181.2 0.2 2.3e-53 180.9 0.2 1.0 1 0 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|332796470|ref|YP_004457970.1| - 1.8e-07 30.9 0.1 3.2e-07 30.1 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|332796470|ref|YP_004457970.1| - 0.0029 16.9 0.2 0.0044 16.3 0.2 1.2 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Glyco_tran_WecB PF03808.13 gi|332796470|ref|YP_004457970.1| - 0.004 17.1 0.0 1.7 8.5 0.0 2.3 2 0 0 2 2 2 2 Glycosyl transferase WecB/TagA/CpsF family IMPDH PF00478.25 gi|332796470|ref|YP_004457970.1| - 0.0044 16.1 0.1 0.011 14.8 0.1 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.12 gi|332796470|ref|YP_004457970.1| - 0.008 15.6 0.2 0.019 14.4 0.2 1.6 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|332796470|ref|YP_004457970.1| - 0.035 13.0 0.1 0.064 12.1 0.1 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain NanE PF04131.14 gi|332796470|ref|YP_004457970.1| - 0.045 12.9 0.0 0.35 10.0 0.1 2.1 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase ThiG PF05690.14 gi|332796470|ref|YP_004457970.1| - 0.048 13.0 0.2 1.4 8.1 0.1 2.1 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Ribul_P_3_epim PF00834.19 gi|332796470|ref|YP_004457970.1| - 0.077 12.4 0.1 0.21 11.0 0.1 1.6 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF3150 PF11348.8 gi|332796470|ref|YP_004457970.1| - 0.085 12.1 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) Elf1 PF05129.13 gi|332796471|ref|YP_004457971.1| - 6.3e-19 67.8 0.0 9e-19 67.3 0.0 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Lar_restr_allev PF14354.6 gi|332796471|ref|YP_004457971.1| - 0.00045 20.5 0.1 0.00071 19.9 0.1 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar OrfB_Zn_ribbon PF07282.11 gi|332796471|ref|YP_004457971.1| - 0.031 14.2 0.1 0.054 13.4 0.1 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|332796471|ref|YP_004457971.1| - 0.034 13.6 2.4 1.4 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TackOD1 PF18551.1 gi|332796471|ref|YP_004457971.1| - 0.035 13.8 0.2 0.05 13.3 0.2 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Rubredoxin PF00301.20 gi|332796471|ref|YP_004457971.1| - 0.046 13.7 0.6 0.23 11.5 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-RING_7 PF02591.15 gi|332796471|ref|YP_004457971.1| - 0.06 13.6 1.1 2 8.7 0.2 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain eIF-5_eIF-2B PF01873.17 gi|332796471|ref|YP_004457971.1| - 0.06 13.2 0.4 0.11 12.4 0.4 1.4 1 0 0 1 1 1 0 Domain found in IF2B/IF5 Sgf11 PF08209.11 gi|332796471|ref|YP_004457971.1| - 0.08 12.5 0.7 2.4 7.8 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) RbpA PF13397.6 gi|332796471|ref|YP_004457971.1| - 0.12 13.0 0.2 0.6 10.7 0.0 2.1 1 1 2 3 3 3 0 RNA polymerase-binding protein zf-Mss51 PF13824.6 gi|332796471|ref|YP_004457971.1| - 0.31 11.2 2.6 1.2 9.2 0.2 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_4 PF13717.6 gi|332796471|ref|YP_004457971.1| - 0.58 10.1 4.2 3.5 7.6 4.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain SWIM PF04434.17 gi|332796472|ref|YP_004457972.1| - 2.2e-06 27.2 0.8 3.8e-06 26.4 0.8 1.4 1 0 0 1 1 1 1 SWIM zinc finger Rib_5-P_isom_A PF06026.14 gi|332796473|ref|YP_004457973.1| - 9.2e-42 142.6 0.2 1.2e-41 142.2 0.2 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|332796473|ref|YP_004457973.1| - 0.0048 16.8 0.2 0.011 15.7 0.1 1.6 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|332796473|ref|YP_004457973.1| - 0.0064 15.7 0.0 0.0091 15.1 0.0 1.2 1 0 0 1 1 1 1 Putative sugar-binding domain DUF724 PF05266.14 gi|332796473|ref|YP_004457973.1| - 0.087 12.6 0.0 0.38 10.6 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF724) ABC_tran PF00005.27 gi|332796474|ref|YP_004457974.1| - 3.8e-40 137.6 0.1 1.9e-18 67.3 0.0 3.0 3 0 0 3 3 2 2 ABC transporter AAA_21 PF13304.6 gi|332796474|ref|YP_004457974.1| - 1.8e-15 57.6 7.5 0.0013 18.6 1.5 4.5 2 2 2 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system RLI PF04068.15 gi|332796474|ref|YP_004457974.1| - 7.7e-14 51.2 1.6 2.1e-13 49.9 1.6 1.8 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI SMC_N PF02463.19 gi|332796474|ref|YP_004457974.1| - 9.2e-12 44.9 9.4 2.4e-05 23.9 2.8 4.3 3 2 0 3 3 3 2 RecF/RecN/SMC N terminal domain Fer4 PF00037.27 gi|332796474|ref|YP_004457974.1| - 1e-07 31.4 5.7 1e-07 31.4 5.7 2.6 3 0 0 3 3 2 1 4Fe-4S binding domain AAA_18 PF13238.6 gi|332796474|ref|YP_004457974.1| - 3.4e-07 30.9 0.5 0.0088 16.6 0.5 2.8 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|332796474|ref|YP_004457974.1| - 8.1e-07 29.7 5.8 0.0028 18.2 1.2 2.7 1 1 1 2 2 2 2 AAA domain AAA PF00004.29 gi|332796474|ref|YP_004457974.1| - 9.4e-06 26.1 0.0 0.13 12.7 0.0 3.1 2 1 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|332796474|ref|YP_004457974.1| - 1.6e-05 25.3 0.0 0.0063 16.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Fer4_10 PF13237.6 gi|332796474|ref|YP_004457974.1| - 2e-05 24.6 8.8 0.00054 20.0 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_14 PF13173.6 gi|332796474|ref|YP_004457974.1| - 2.6e-05 24.3 1.0 0.27 11.3 0.0 3.2 2 2 1 3 3 3 2 AAA domain RNA_helicase PF00910.22 gi|332796474|ref|YP_004457974.1| - 5e-05 23.6 0.1 0.2 12.0 0.0 3.1 3 0 0 3 3 2 1 RNA helicase Rad17 PF03215.15 gi|332796474|ref|YP_004457974.1| - 5.8e-05 23.1 0.0 0.34 10.8 0.0 2.5 2 1 0 2 2 2 2 Rad17 P-loop domain AAA_29 PF13555.6 gi|332796474|ref|YP_004457974.1| - 6.5e-05 22.6 0.6 0.14 11.9 0.2 3.0 3 0 0 3 3 3 1 P-loop containing region of AAA domain Fer4_6 PF12837.7 gi|332796474|ref|YP_004457974.1| - 0.00012 22.0 13.1 0.00023 21.1 3.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332796474|ref|YP_004457974.1| - 0.00013 22.5 18.4 0.0006 20.3 2.1 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332796474|ref|YP_004457974.1| - 0.00013 21.8 2.1 0.00013 21.8 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_22 PF13401.6 gi|332796474|ref|YP_004457974.1| - 0.00015 22.0 0.3 0.34 11.2 0.0 3.0 3 1 0 3 3 2 1 AAA domain Fer4_21 PF14697.6 gi|332796474|ref|YP_004457974.1| - 0.00022 21.3 7.7 0.00039 20.5 7.7 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain AAA_24 PF13479.6 gi|332796474|ref|YP_004457974.1| - 0.0003 20.6 2.3 0.1 12.3 0.0 2.8 2 1 0 2 2 2 1 AAA domain MMR_HSR1 PF01926.23 gi|332796474|ref|YP_004457974.1| - 0.00032 20.8 2.2 1.4 9.1 0.1 3.5 4 0 0 4 4 3 2 50S ribosome-binding GTPase AAA_15 PF13175.6 gi|332796474|ref|YP_004457974.1| - 0.00034 20.4 9.7 0.036 13.8 0.1 3.3 3 1 0 3 3 3 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|332796474|ref|YP_004457974.1| - 0.00051 20.0 0.1 3.6 7.5 0.0 3.5 4 0 0 4 4 4 0 RsgA GTPase NB-ARC PF00931.22 gi|332796474|ref|YP_004457974.1| - 0.00058 19.1 0.2 0.16 11.1 0.0 2.6 2 0 0 2 2 2 1 NB-ARC domain Fer4_9 PF13187.6 gi|332796474|ref|YP_004457974.1| - 0.00061 19.9 7.6 0.0011 19.1 7.6 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF87 PF01935.17 gi|332796474|ref|YP_004457974.1| - 0.00068 19.8 2.1 1.6 8.8 1.6 3.3 2 1 0 2 2 2 1 Helicase HerA, central domain NACHT PF05729.12 gi|332796474|ref|YP_004457974.1| - 0.00085 19.3 0.2 0.18 11.7 0.0 2.6 2 0 0 2 2 2 1 NACHT domain AAA_30 PF13604.6 gi|332796474|ref|YP_004457974.1| - 0.0017 18.1 1.0 1.8 8.2 0.0 3.4 4 1 1 5 5 3 1 AAA domain AAA_33 PF13671.6 gi|332796474|ref|YP_004457974.1| - 0.0018 18.5 0.0 0.52 10.5 0.0 3.2 3 1 0 3 3 2 1 AAA domain PRK PF00485.18 gi|332796474|ref|YP_004457974.1| - 0.0022 17.7 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family CLP1_P PF16575.5 gi|332796474|ref|YP_004457974.1| - 0.0026 17.6 0.0 0.4 10.5 0.0 2.4 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_32 PF13654.6 gi|332796474|ref|YP_004457974.1| - 0.0055 15.5 0.3 1.9 7.2 0.0 3.2 3 0 0 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|332796474|ref|YP_004457974.1| - 0.0056 16.9 0.0 2.9 8.1 0.0 2.8 3 0 0 3 3 2 1 AAA domain VirE PF05272.11 gi|332796474|ref|YP_004457974.1| - 0.0062 16.3 0.0 0.46 10.2 0.0 2.5 2 0 0 2 2 2 1 Virulence-associated protein E KAP_NTPase PF07693.14 gi|332796474|ref|YP_004457974.1| - 0.0084 15.4 0.0 1.2 8.3 0.0 2.2 2 0 0 2 2 2 1 KAP family P-loop domain MobB PF03205.14 gi|332796474|ref|YP_004457974.1| - 0.012 15.5 0.1 0.96 9.3 0.0 2.6 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Fer4_16 PF13484.6 gi|332796474|ref|YP_004457974.1| - 0.012 16.5 0.7 0.012 16.5 0.7 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain AAA_13 PF13166.6 gi|332796474|ref|YP_004457974.1| - 0.013 14.2 0.2 3.7 6.1 0.0 3.0 3 0 0 3 3 3 0 AAA domain SbcCD_C PF13558.6 gi|332796474|ref|YP_004457974.1| - 0.015 15.5 0.0 5.7 7.2 0.0 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|332796474|ref|YP_004457974.1| - 0.018 15.0 0.4 30 4.6 0.0 3.6 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) Pox_A32 PF04665.12 gi|332796474|ref|YP_004457974.1| - 0.04 13.4 0.3 6.7 6.1 0.0 2.4 2 0 0 2 2 2 0 Poxvirus A32 protein AAA_7 PF12775.7 gi|332796474|ref|YP_004457974.1| - 0.04 13.4 1.2 8.9 5.8 0.0 3.3 4 0 0 4 4 3 0 P-loop containing dynein motor region Zeta_toxin PF06414.12 gi|332796474|ref|YP_004457974.1| - 0.048 12.9 0.0 1.5 8.1 0.0 2.4 2 0 0 2 2 2 0 Zeta toxin ATPase_2 PF01637.18 gi|332796474|ref|YP_004457974.1| - 0.079 12.9 4.6 0.57 10.1 0.3 2.8 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Spore_IV_A PF09547.10 gi|332796474|ref|YP_004457974.1| - 0.087 11.8 0.0 8 5.3 0.0 2.2 2 0 0 2 2 2 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.15 gi|332796474|ref|YP_004457974.1| - 0.093 12.6 1.3 4 7.3 0.0 3.2 4 0 0 4 4 2 0 NTPase TsaE PF02367.17 gi|332796474|ref|YP_004457974.1| - 0.11 12.5 0.1 1.1 9.2 0.0 2.4 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MeaB PF03308.16 gi|332796474|ref|YP_004457974.1| - 0.11 11.5 0.1 11 4.9 0.0 2.5 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Fer4_8 PF13183.6 gi|332796474|ref|YP_004457974.1| - 0.12 12.8 0.3 0.12 12.8 0.3 1.8 2 0 0 2 2 1 0 4Fe-4S dicluster domain AAA_25 PF13481.6 gi|332796474|ref|YP_004457974.1| - 0.12 11.9 0.4 6.3 6.3 0.0 3.0 4 0 0 4 4 3 0 AAA domain Fer4_13 PF13370.6 gi|332796474|ref|YP_004457974.1| - 0.15 12.6 1.6 0.39 11.3 1.6 1.7 1 0 0 1 1 1 0 4Fe-4S single cluster domain of Ferredoxin I PFL-like PF02901.15 gi|332796474|ref|YP_004457974.1| - 0.16 10.6 0.0 1.1 7.8 0.0 1.9 2 0 0 2 2 2 0 Pyruvate formate lyase-like RuvB_N PF05496.12 gi|332796474|ref|YP_004457974.1| - 0.17 11.6 0.0 1.3 8.8 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATP-synt_ab PF00006.25 gi|332796474|ref|YP_004457974.1| - 0.21 11.2 0.0 20 4.8 0.0 2.4 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Fer4_17 PF13534.6 gi|332796474|ref|YP_004457974.1| - 0.29 11.7 7.1 1.7 9.3 7.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain dNK PF01712.19 gi|332796474|ref|YP_004457974.1| - 0.3 10.9 2.5 19 5.1 0.4 3.3 3 1 1 4 4 3 0 Deoxynucleoside kinase Fer4_4 PF12800.7 gi|332796474|ref|YP_004457974.1| - 0.69 10.6 12.1 0.13 12.9 4.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|332796474|ref|YP_004457974.1| - 1.7 9.7 12.9 0.31 12.1 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain FBPase_3 PF01950.16 gi|332796475|ref|YP_004457975.1| - 1.4e-180 600.2 0.0 1.6e-180 600.0 0.0 1.0 1 0 0 1 1 1 1 Fructose-1,6-bisphosphatase Ribosomal_S17e PF00833.18 gi|332796476|ref|YP_004457976.1| - 9.4e-16 57.8 2.8 1e-15 57.7 2.8 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF3932 PF13068.6 gi|332796476|ref|YP_004457976.1| - 0.013 15.8 0.1 0.014 15.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3932) PLD_C PF12357.8 gi|332796476|ref|YP_004457976.1| - 0.078 12.9 0.1 4.1 7.4 0.0 2.0 1 1 1 2 2 2 0 Phospholipase D C terminal Urm1 PF09138.11 gi|332796477|ref|YP_004457977.1| - 3.2e-08 33.8 0.7 4.1e-08 33.5 0.7 1.2 1 0 0 1 1 1 1 Urm1 (Ubiquitin related modifier) ThiS PF02597.20 gi|332796477|ref|YP_004457977.1| - 0.0019 18.8 0.1 0.0023 18.5 0.1 1.1 1 0 0 1 1 1 1 ThiS family DUF87 PF01935.17 gi|332796479|ref|YP_004457979.1| - 2.9e-29 102.8 1.3 2.9e-29 102.8 1.3 1.9 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|332796479|ref|YP_004457979.1| - 9.9e-10 37.6 0.0 0.00026 19.7 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|332796479|ref|YP_004457979.1| - 8.2e-09 34.9 0.1 6.3e-08 31.9 0.0 2.1 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain T4SS-DNA_transf PF02534.14 gi|332796479|ref|YP_004457979.1| - 0.0018 17.1 0.0 0.0041 16.0 0.0 1.5 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer AAA_22 PF13401.6 gi|332796479|ref|YP_004457979.1| - 0.0033 17.7 0.3 3.7 7.8 0.0 2.6 2 1 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|332796479|ref|YP_004457979.1| - 0.0033 17.5 1.3 0.014 15.5 0.0 2.3 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_10 PF12846.7 gi|332796479|ref|YP_004457979.1| - 0.0038 16.2 0.7 0.26 10.2 0.0 2.8 3 0 0 3 3 3 1 AAA-like domain AAA PF00004.29 gi|332796479|ref|YP_004457979.1| - 0.0047 17.3 0.2 5.8 7.4 0.2 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|332796479|ref|YP_004457979.1| - 0.0057 16.3 0.0 0.034 13.8 0.0 2.2 3 0 0 3 3 3 1 Zonular occludens toxin (Zot) AAA_18 PF13238.6 gi|332796479|ref|YP_004457979.1| - 0.02 15.4 0.3 0.082 13.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain ParA PF10609.9 gi|332796479|ref|YP_004457979.1| - 0.051 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase FtsK_SpoIIIE PF01580.18 gi|332796479|ref|YP_004457979.1| - 0.065 12.6 0.0 0.12 11.7 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family DEAD PF00270.29 gi|332796479|ref|YP_004457979.1| - 0.11 12.2 0.0 12 5.6 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase PhoH PF02562.16 gi|332796479|ref|YP_004457979.1| - 0.13 11.7 0.4 15 5.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein ABC_tran PF00005.27 gi|332796479|ref|YP_004457979.1| - 0.14 12.7 0.0 0.52 10.8 0.0 1.9 2 0 0 2 2 1 0 ABC transporter Cpn60_TCP1 PF00118.24 gi|332796480|ref|YP_004457980.1| - 3.8e-176 586.5 13.2 4.3e-176 586.3 13.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TF_Zn_Ribbon PF08271.12 gi|332796481|ref|YP_004457981.1| - 2.9e-10 39.5 0.1 7.6e-10 38.1 0.1 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|332796481|ref|YP_004457981.1| - 0.00078 19.1 0.4 0.0016 18.1 0.4 1.5 1 0 0 1 1 1 1 Ribosomal protein S27 zf-RRN7 PF11781.8 gi|332796481|ref|YP_004457981.1| - 0.019 14.7 0.1 0.032 13.9 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SR1P PF13790.6 gi|332796481|ref|YP_004457981.1| - 0.053 13.6 0.3 0.16 12.1 0.3 1.8 1 0 0 1 1 1 0 SR1 protein zf-ribbon_3 PF13248.6 gi|332796481|ref|YP_004457981.1| - 0.059 12.8 3.3 1.2 8.6 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Cys_rich_CPXG PF14255.6 gi|332796481|ref|YP_004457981.1| - 0.083 12.8 2.8 2.5 8.1 0.3 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG tRNA_int_endo PF01974.17 gi|332796482|ref|YP_004457982.1| - 0.00024 21.1 0.1 0.00041 20.4 0.1 1.5 1 1 0 1 1 1 1 tRNA intron endonuclease, catalytic C-terminal domain SusD-like_2 PF12771.7 gi|332796482|ref|YP_004457982.1| - 0.11 11.4 3.9 0.65 8.9 0.8 2.1 1 1 1 2 2 2 0 Starch-binding associating with outer membrane tRNA-synt_His PF13393.6 gi|332796483|ref|YP_004457983.1| - 2.3e-67 227.5 0.0 2.8e-67 227.2 0.0 1.0 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.25 gi|332796483|ref|YP_004457983.1| - 5e-14 52.7 0.3 5.7e-13 49.2 0.3 2.4 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|332796483|ref|YP_004457983.1| - 3e-13 49.7 0.1 6.1e-13 48.7 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.20 gi|332796483|ref|YP_004457983.1| - 4.1e-05 23.2 0.0 0.00012 21.7 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetases class II core domain (F) HGTP_anticodon2 PF12745.7 gi|332796483|ref|YP_004457983.1| - 0.0045 16.5 0.5 0.0093 15.5 0.5 1.5 1 0 0 1 1 1 1 Anticodon binding domain of tRNAs tRNA-synt_2 PF00152.20 gi|332796483|ref|YP_004457983.1| - 0.047 12.8 1.3 12 4.9 0.0 2.8 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) Proteasome PF00227.26 gi|332796484|ref|YP_004457984.1| - 1.4e-47 161.7 0.0 1.7e-47 161.4 0.0 1.0 1 0 0 1 1 1 1 Proteasome subunit RNA_pol_RpbG PF16992.5 gi|332796485|ref|YP_004457985.1| - 3.7e-50 169.0 5.7 4.2e-50 168.8 5.7 1.0 1 0 0 1 1 1 1 DNA-directed RNA polymerase, subunit G RNA_pol_Rpb8 PF03870.15 gi|332796485|ref|YP_004457985.1| - 0.0015 18.7 1.7 0.27 11.4 0.2 2.0 1 1 1 2 2 2 2 RNA polymerase Rpb8 Lsm_C PF14894.6 gi|332796486|ref|YP_004457986.1| - 4.2e-31 106.5 0.6 7e-31 105.8 0.6 1.4 1 0 0 1 1 1 1 Lsm C-terminal LSM PF01423.22 gi|332796486|ref|YP_004457986.1| - 1.2e-05 24.9 0.1 3e-05 23.6 0.1 1.8 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|332796486|ref|YP_004457986.1| - 9.6e-05 22.5 0.1 0.00014 21.9 0.1 1.3 1 0 0 1 1 1 1 Ataxin 2 SM domain Hfq PF17209.3 gi|332796486|ref|YP_004457986.1| - 0.019 14.6 0.2 0.034 13.8 0.2 1.4 1 0 0 1 1 1 0 Hfq protein TGT PF01702.18 gi|332796487|ref|YP_004457987.1| - 4.8e-65 220.0 0.0 6.3e-65 219.6 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase DUF4790 PF16037.5 gi|332796487|ref|YP_004457987.1| - 0.028 14.9 0.0 0.1 13.1 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4790) DUF5591 PF17884.1 gi|332796487|ref|YP_004457987.1| - 0.031 14.1 0.1 0.087 12.7 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF5591) NDUF_C2 PF06374.11 gi|332796487|ref|YP_004457987.1| - 0.078 13.1 0.3 0.24 11.6 0.1 1.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) PAC2 PF09754.9 gi|332796488|ref|YP_004457988.1| - 4.8e-32 111.7 0.0 5.5e-32 111.5 0.0 1.0 1 0 0 1 1 1 1 PAC2 family PAC1 PF16094.5 gi|332796488|ref|YP_004457988.1| - 0.086 12.0 0.0 0.17 11.0 0.0 1.4 2 0 0 2 2 2 0 Proteasome assembly chaperone 4 TGT_C2 PF14810.6 gi|332796489|ref|YP_004457989.1| - 7.3e-19 67.7 0.0 1.6e-18 66.6 0.0 1.5 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|332796489|ref|YP_004457989.1| - 1.7e-13 50.3 2.1 2.4e-13 49.9 2.1 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|332796489|ref|YP_004457989.1| - 2e-05 24.8 2.0 2.1e-05 24.7 0.2 2.0 2 1 0 2 2 2 1 UPF0113 PUA domain PUA_3 PF17785.1 gi|332796489|ref|YP_004457989.1| - 0.016 15.0 0.2 0.035 13.9 0.1 1.6 1 1 0 1 1 1 0 PUA-like domain AAA PF00004.29 gi|332796490|ref|YP_004457990.1| - 8.2e-44 149.2 0.0 1.7e-43 148.2 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|332796490|ref|YP_004457990.1| - 4.7e-17 61.5 0.1 1.1e-16 60.4 0.1 1.6 1 0 0 1 1 1 1 AAA+ lid domain Prot_ATP_ID_OB PF16450.5 gi|332796490|ref|YP_004457990.1| - 2.2e-08 33.9 0.4 4.8e-08 32.8 0.4 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB C-terminal domain AAA_2 PF07724.14 gi|332796490|ref|YP_004457990.1| - 6.3e-08 32.9 0.0 2.6e-07 30.9 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|332796490|ref|YP_004457990.1| - 4.4e-07 30.5 0.2 0.00017 22.0 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain Prot_ATP_OB_N PF17758.1 gi|332796490|ref|YP_004457990.1| - 4.7e-07 29.4 0.1 1.5e-06 27.7 0.1 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain RuvB_N PF05496.12 gi|332796490|ref|YP_004457990.1| - 8.3e-06 25.6 0.1 4.3e-05 23.3 0.0 2.3 2 1 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|332796490|ref|YP_004457990.1| - 2.6e-05 24.2 0.2 0.00017 21.6 0.2 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|332796490|ref|YP_004457990.1| - 8.9e-05 22.8 0.8 0.002 18.4 0.2 2.9 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|332796490|ref|YP_004457990.1| - 0.0011 19.0 0.1 0.0047 17.0 0.0 2.1 2 0 0 2 2 1 1 AAA domain DUF815 PF05673.13 gi|332796490|ref|YP_004457990.1| - 0.0011 18.2 0.0 0.0024 17.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|332796490|ref|YP_004457990.1| - 0.0013 18.2 0.0 0.0025 17.2 0.0 1.5 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|332796490|ref|YP_004457990.1| - 0.0014 18.9 0.0 0.0025 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796490|ref|YP_004457990.1| - 0.0015 19.1 0.1 0.012 16.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|332796490|ref|YP_004457990.1| - 0.0017 17.6 0.0 0.0036 16.6 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|332796490|ref|YP_004457990.1| - 0.0022 17.7 0.0 0.0062 16.3 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_24 PF13479.6 gi|332796490|ref|YP_004457990.1| - 0.0033 17.2 0.1 0.0091 15.7 0.0 1.8 2 0 0 2 2 1 1 AAA domain bZIP_1 PF00170.21 gi|332796490|ref|YP_004457990.1| - 0.0045 17.1 4.3 0.0051 16.9 2.2 2.1 2 0 0 2 2 2 1 bZIP transcription factor AAA_33 PF13671.6 gi|332796490|ref|YP_004457990.1| - 0.0045 17.1 0.0 0.009 16.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|332796490|ref|YP_004457990.1| - 0.0083 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region NACHT PF05729.12 gi|332796490|ref|YP_004457990.1| - 0.011 15.7 0.1 0.082 12.8 0.0 2.1 1 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|332796490|ref|YP_004457990.1| - 0.011 16.1 0.0 0.028 14.8 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|332796490|ref|YP_004457990.1| - 0.012 15.3 0.0 0.039 13.7 0.0 1.9 2 0 0 2 2 1 0 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|332796490|ref|YP_004457990.1| - 0.015 15.2 0.2 0.15 12.0 0.0 2.6 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Zeta_toxin PF06414.12 gi|332796490|ref|YP_004457990.1| - 0.018 14.3 0.0 0.044 13.0 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ATPase PF06745.13 gi|332796490|ref|YP_004457990.1| - 0.023 14.0 1.2 0.053 12.9 0.1 2.1 2 1 0 2 2 2 0 KaiC Parvo_NS1 PF01057.17 gi|332796490|ref|YP_004457990.1| - 0.036 13.1 0.0 0.062 12.4 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ABC_tran PF00005.27 gi|332796490|ref|YP_004457990.1| - 0.045 14.3 0.1 0.28 11.7 0.0 2.2 2 1 0 2 2 2 0 ABC transporter Bac_DnaA PF00308.18 gi|332796490|ref|YP_004457990.1| - 0.055 13.3 0.1 0.21 11.4 0.0 2.0 2 0 0 2 2 1 0 Bacterial dnaA protein AAA_25 PF13481.6 gi|332796490|ref|YP_004457990.1| - 0.056 13.0 0.3 0.14 11.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain ThylakoidFormat PF11264.8 gi|332796490|ref|YP_004457990.1| - 0.058 13.1 0.3 0.14 11.9 0.3 1.6 1 0 0 1 1 1 0 Thylakoid formation protein DUF16 PF01519.16 gi|332796490|ref|YP_004457990.1| - 0.058 13.9 0.7 0.2 12.2 0.1 2.2 2 0 0 2 2 1 0 Protein of unknown function DUF16 PhoH PF02562.16 gi|332796490|ref|YP_004457990.1| - 0.061 12.8 0.1 0.18 11.2 0.1 1.7 2 0 0 2 2 1 0 PhoH-like protein TsaE PF02367.17 gi|332796490|ref|YP_004457990.1| - 0.062 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE CPT PF07931.12 gi|332796490|ref|YP_004457990.1| - 0.092 12.6 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein cobW PF02492.19 gi|332796490|ref|YP_004457990.1| - 0.098 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|332796490|ref|YP_004457990.1| - 0.1 12.3 0.3 0.23 11.2 0.3 1.6 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|332796490|ref|YP_004457990.1| - 0.14 11.9 0.4 0.52 10.0 0.0 2.1 3 0 0 3 3 2 0 AAA domain DivIC PF04977.15 gi|332796490|ref|YP_004457990.1| - 0.26 11.1 3.3 0.43 10.4 1.3 2.2 2 0 0 2 2 2 0 Septum formation initiator DUF4140 PF13600.6 gi|332796490|ref|YP_004457990.1| - 0.82 10.1 3.4 3.3 8.2 0.4 2.7 3 0 0 3 3 2 0 N-terminal domain of unknown function (DUF4140) DUF5082 PF16888.5 gi|332796490|ref|YP_004457990.1| - 1.2 9.4 5.1 1.2 9.5 2.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|332796490|ref|YP_004457990.1| - 2 8.4 8.2 0.15 12.0 2.8 1.9 3 0 0 3 3 1 0 Prefoldin subunit HTH_3 PF01381.22 gi|332796491|ref|YP_004457991.1| - 3.5e-09 36.6 1.5 5.7e-09 35.9 1.5 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|332796491|ref|YP_004457991.1| - 3.2e-06 27.4 0.0 4.5e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|332796491|ref|YP_004457991.1| - 9.9e-06 25.3 0.1 1.6e-05 24.7 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|332796491|ref|YP_004457991.1| - 0.00061 19.8 0.7 0.0013 18.7 0.7 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|332796491|ref|YP_004457991.1| - 0.0011 19.1 0.3 0.0015 18.6 0.3 1.2 1 0 0 1 1 1 1 Antitoxin component of bacterial toxin-antitoxin system, MqsA Terminase_4 PF05119.12 gi|332796491|ref|YP_004457991.1| - 0.011 16.1 0.6 0.019 15.4 0.4 1.5 1 1 0 1 1 1 0 Phage terminase, small subunit DUF3861 PF12977.7 gi|332796491|ref|YP_004457991.1| - 0.048 13.8 0.6 0.4 10.9 0.2 2.1 1 1 1 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3861) HTH_37 PF13744.6 gi|332796491|ref|YP_004457991.1| - 0.049 13.6 0.1 0.094 12.7 0.1 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain DUF3618 PF12277.8 gi|332796491|ref|YP_004457991.1| - 0.16 12.3 0.0 0.3 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) Nucleoside_tran PF01733.18 gi|332796491|ref|YP_004457991.1| - 0.66 9.3 2.4 0.77 9.1 2.3 1.2 1 1 0 1 1 1 0 Nucleoside transporter MMR_HSR1 PF01926.23 gi|332796492|ref|YP_004457992.1| - 1.5e-19 70.2 0.2 3.3e-19 69.0 0.2 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|332796492|ref|YP_004457992.1| - 4.6e-16 59.2 1.5 8.2e-16 58.4 1.5 1.4 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP-bdg_N PF13167.6 gi|332796492|ref|YP_004457992.1| - 1.3e-13 51.4 0.0 3.4e-13 50.1 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal FeoB_N PF02421.18 gi|332796492|ref|YP_004457992.1| - 1.4e-08 34.4 0.7 2.5e-08 33.6 0.1 1.8 2 0 0 2 2 2 1 Ferrous iron transport protein B SRPRB PF09439.10 gi|332796492|ref|YP_004457992.1| - 0.00067 19.1 0.3 0.0013 18.2 0.3 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit Dynamin_N PF00350.23 gi|332796492|ref|YP_004457992.1| - 0.00076 19.6 0.3 0.58 10.2 0.1 2.4 1 1 1 2 2 2 2 Dynamin family MMR_HSR1_Xtn PF16897.5 gi|332796492|ref|YP_004457992.1| - 0.012 15.6 0.0 0.046 13.7 0.0 2.0 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain NOG1 PF06858.14 gi|332796492|ref|YP_004457992.1| - 0.031 14.1 0.1 0.098 12.5 0.1 1.9 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) ABC_tran PF00005.27 gi|332796492|ref|YP_004457992.1| - 0.051 14.1 0.1 0.11 13.0 0.1 1.6 1 0 0 1 1 1 0 ABC transporter Pro_sub2 PF18513.1 gi|332796492|ref|YP_004457992.1| - 0.073 13.3 1.6 0.15 12.3 0.1 2.3 2 1 0 2 2 2 0 Prodomain subtilisin 2 TFIIE_alpha PF02002.17 gi|332796493|ref|YP_004457993.1| - 2.4e-25 88.4 10.4 4e-25 87.7 6.7 2.0 2 0 0 2 2 2 1 TFIIE alpha subunit TrmB PF01978.19 gi|332796493|ref|YP_004457993.1| - 0.00032 20.5 0.1 0.00078 19.3 0.1 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_9 PF08221.11 gi|332796493|ref|YP_004457993.1| - 0.0011 19.0 0.1 0.005 16.9 0.0 2.0 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|332796493|ref|YP_004457993.1| - 0.0033 17.5 0.0 0.0063 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TF_Zn_Ribbon PF08271.12 gi|332796493|ref|YP_004457993.1| - 0.004 16.6 1.4 0.012 15.1 1.4 1.9 1 1 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|332796493|ref|YP_004457993.1| - 0.0056 16.7 0.1 0.0096 15.9 0.1 1.4 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HTH_Crp_2 PF13545.6 gi|332796493|ref|YP_004457993.1| - 0.0082 16.1 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rad50_zn_hook PF04423.14 gi|332796493|ref|YP_004457993.1| - 0.014 15.2 0.4 0.014 15.2 0.4 3.5 3 1 1 4 4 4 0 Rad50 zinc hook motif Zn_Tnp_IS1595 PF12760.7 gi|332796493|ref|YP_004457993.1| - 0.02 14.8 0.0 0.04 13.9 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain LexA_DNA_bind PF01726.16 gi|332796493|ref|YP_004457993.1| - 0.024 14.4 0.2 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 LexA DNA binding domain Sigma70_r3 PF04539.16 gi|332796493|ref|YP_004457993.1| - 0.037 14.1 2.1 0.078 13.1 0.0 2.5 3 1 0 3 3 3 0 Sigma-70 region 3 zf-C4_Topoisom PF01396.19 gi|332796493|ref|YP_004457993.1| - 0.039 13.7 0.4 0.088 12.6 0.1 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Rrf2 PF02082.20 gi|332796493|ref|YP_004457993.1| - 0.046 14.1 0.3 0.11 12.8 0.0 1.7 2 0 0 2 2 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|332796493|ref|YP_004457993.1| - 0.047 13.5 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family zf-ISL3 PF14690.6 gi|332796493|ref|YP_004457993.1| - 0.054 14.2 0.2 0.18 12.5 0.0 1.9 2 0 0 2 2 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HTH_Mga PF08280.11 gi|332796493|ref|YP_004457993.1| - 0.054 13.5 1.8 0.066 13.2 0.3 1.9 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain MerR-DNA-bind PF09278.11 gi|332796493|ref|YP_004457993.1| - 0.056 14.0 1.6 3.5 8.2 0.0 3.0 3 0 0 3 3 3 0 MerR, DNA binding Mut7-C PF01927.16 gi|332796493|ref|YP_004457993.1| - 0.079 13.1 0.5 0.17 12.0 0.5 1.5 1 0 0 1 1 1 0 Mut7-C RNAse domain IF2_N PF04760.15 gi|332796493|ref|YP_004457993.1| - 0.093 12.6 2.2 0.31 10.9 0.1 2.8 2 1 1 3 3 3 0 Translation initiation factor IF-2, N-terminal region HTH_11 PF08279.12 gi|332796493|ref|YP_004457993.1| - 0.22 11.5 0.1 0.22 11.5 0.1 2.2 3 0 0 3 3 3 0 HTH domain HTH_DeoR PF08220.12 gi|332796493|ref|YP_004457993.1| - 0.25 11.1 1.1 0.37 10.6 0.1 1.8 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DNA_methylase PF00145.17 gi|332796494|ref|YP_004457994.1| - 4.8e-53 180.6 0.0 1.1e-38 133.4 0.0 2.1 1 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|332796494|ref|YP_004457994.1| - 0.00027 20.6 0.0 0.00049 19.7 0.0 1.4 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase DUF2443 PF10398.9 gi|332796494|ref|YP_004457994.1| - 0.061 13.4 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2443) Met_10 PF02475.16 gi|332796494|ref|YP_004457994.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.8 2 1 0 2 2 2 0 Met-10+ like-protein DUF2122 PF09895.9 gi|332796495|ref|YP_004457995.1| - 1.1e-35 122.3 0.1 1.4e-35 121.9 0.1 1.1 1 0 0 1 1 1 1 RecB-family nuclease (DUF2122) LSM PF01423.22 gi|332796496|ref|YP_004457996.1| - 1.9e-23 81.9 0.3 2.1e-23 81.8 0.3 1.0 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|332796496|ref|YP_004457996.1| - 0.0019 18.3 0.1 0.0025 17.9 0.1 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|332796496|ref|YP_004457996.1| - 0.023 14.8 0.0 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 RimP C-terminal SH3 domain HydF_dimer PF18128.1 gi|332796496|ref|YP_004457996.1| - 0.053 13.6 0.2 1.4 9.1 0.0 2.0 2 0 0 2 2 2 0 Hydrogen maturase F dimerization domain Ribosomal_L37e PF01907.19 gi|332796497|ref|YP_004457997.1| - 6.9e-25 87.0 10.2 7.6e-25 86.8 10.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.7 gi|332796497|ref|YP_004457997.1| - 0.0078 16.2 1.7 0.0098 15.9 1.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon Cript PF10235.9 gi|332796497|ref|YP_004457997.1| - 0.0084 16.7 0.6 0.01 16.3 0.6 1.2 1 0 0 1 1 1 1 Microtubule-associated protein CRIPT NOB1_Zn_bind PF08772.11 gi|332796497|ref|YP_004457997.1| - 0.011 15.9 1.2 0.014 15.6 1.2 1.2 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.11 gi|332796497|ref|YP_004457997.1| - 0.028 14.3 2.1 0.037 14.0 2.1 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Ephrin_rec_like PF07699.13 gi|332796497|ref|YP_004457997.1| - 0.034 13.9 2.1 0.047 13.4 2.1 1.3 1 1 0 1 1 1 0 Putative ephrin-receptor like zf-LSD1 PF06943.12 gi|332796497|ref|YP_004457997.1| - 0.056 13.3 0.6 0.056 13.3 0.6 2.1 2 0 0 2 2 2 0 LSD1 zinc finger HypA PF01155.19 gi|332796497|ref|YP_004457997.1| - 0.086 12.9 0.4 0.09 12.8 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FYVE_2 PF02318.16 gi|332796497|ref|YP_004457997.1| - 0.1 12.8 1.4 0.11 12.7 1.4 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zinc_ribbon_2 PF13240.6 gi|332796497|ref|YP_004457997.1| - 0.65 9.8 5.6 1.4 8.8 5.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain Spermine_synth PF01564.17 gi|332796498|ref|YP_004457998.1| - 1.2e-47 161.8 0.0 2.2e-47 160.9 0.0 1.4 1 0 0 1 1 1 1 Spermine/spermidine synthase domain Spermine_synt_N PF17284.2 gi|332796498|ref|YP_004457998.1| - 1.3e-07 31.3 0.0 2.7e-07 30.4 0.0 1.5 1 0 0 1 1 1 1 Spermidine synthase tetramerisation domain Methyltransf_12 PF08242.12 gi|332796498|ref|YP_004457998.1| - 9.8e-06 26.2 0.0 3e-05 24.7 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332796498|ref|YP_004457998.1| - 2.4e-05 25.0 0.0 5.1e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.11 gi|332796498|ref|YP_004457998.1| - 3.1e-05 23.9 0.0 5.6e-05 23.0 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|332796498|ref|YP_004457998.1| - 0.00023 20.7 0.0 0.00037 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_5 PF01795.19 gi|332796498|ref|YP_004457998.1| - 0.0077 15.8 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 MraW methylase family NSP16 PF06460.12 gi|332796498|ref|YP_004457998.1| - 0.018 14.2 0.3 0.69 9.0 0.0 2.3 2 1 0 2 2 2 0 Coronavirus NSP16 AAA_31 PF13614.6 gi|332796498|ref|YP_004457998.1| - 0.019 14.9 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_2 PF00891.18 gi|332796498|ref|YP_004457998.1| - 0.047 13.0 0.0 0.079 12.2 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain RNase_J_C PF17770.1 gi|332796498|ref|YP_004457998.1| - 0.18 12.9 0.6 74 4.5 0.0 3.4 4 0 0 4 4 4 0 Ribonuclease J C-terminal domain Ribosomal_L21e PF01157.18 gi|332796499|ref|YP_004457999.1| - 2.1e-34 117.4 0.5 2.3e-34 117.3 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e CSD2 PF17876.1 gi|332796499|ref|YP_004457999.1| - 0.0015 18.7 0.0 0.0023 18.1 0.0 1.3 1 0 0 1 1 1 1 Cold shock domain RNA_pol_Rpb4 PF03874.16 gi|332796500|ref|YP_004458000.1| - 1.4e-10 41.6 2.3 1.5e-10 41.4 2.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 TINF2_N PF14973.6 gi|332796500|ref|YP_004458000.1| - 0.02 15.3 0.2 0.024 15.0 0.2 1.1 1 0 0 1 1 1 0 TERF1-interacting nuclear factor 2 N-terminus Thg1 PF04446.12 gi|332796500|ref|YP_004458000.1| - 0.097 12.7 0.1 0.13 12.3 0.1 1.2 1 0 0 1 1 1 0 tRNAHis guanylyltransferase DUF655 PF04919.12 gi|332796501|ref|YP_004458001.1| - 1.9e-59 200.7 5.9 2.2e-59 200.4 5.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_6 PF14579.6 gi|332796501|ref|YP_004458001.1| - 0.00011 22.3 1.0 0.00061 20.0 0.0 2.5 2 1 1 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|332796501|ref|YP_004458001.1| - 0.00086 19.5 0.6 0.0022 18.2 0.1 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|332796501|ref|YP_004458001.1| - 0.022 14.6 0.1 0.078 12.9 0.1 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|332796501|ref|YP_004458001.1| - 0.063 13.9 0.2 0.063 13.9 0.2 2.7 3 0 0 3 3 3 0 Helix-hairpin-helix domain RrnaAD PF00398.20 gi|332796502|ref|YP_004458002.1| - 1.9e-13 50.1 0.9 3.2e-12 46.1 0.9 2.0 1 1 0 1 1 1 1 Ribosomal RNA adenine dimethylase DUF3799 PF12684.7 gi|332796502|ref|YP_004458002.1| - 0.089 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 PDDEXK-like domain of unknown function (DUF3799) MTS PF05175.14 gi|332796503|ref|YP_004458003.1| - 2.2e-09 37.1 0.0 4.6e-09 36.0 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain PrmA PF06325.13 gi|332796503|ref|YP_004458003.1| - 8.5e-08 31.9 0.1 1.3e-07 31.3 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|332796503|ref|YP_004458003.1| - 9.8e-06 25.5 0.0 1.4e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Met_10 PF02475.16 gi|332796503|ref|YP_004458003.1| - 4.7e-05 23.2 0.0 5e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_31 PF13847.6 gi|332796503|ref|YP_004458003.1| - 0.0035 17.1 0.0 0.0046 16.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332796503|ref|YP_004458003.1| - 0.0052 17.5 0.0 0.0077 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|332796503|ref|YP_004458003.1| - 0.0052 15.9 0.0 0.0075 15.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|332796503|ref|YP_004458003.1| - 0.012 15.4 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|332796503|ref|YP_004458003.1| - 0.013 15.2 0.5 0.021 14.6 0.1 1.6 2 0 0 2 2 2 0 Lysine methyltransferase DUF3419 PF11899.8 gi|332796503|ref|YP_004458003.1| - 0.028 13.6 0.0 0.039 13.2 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Methyltransf_11 PF08241.12 gi|332796503|ref|YP_004458003.1| - 0.044 14.4 0.0 0.067 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|332796503|ref|YP_004458003.1| - 0.094 12.7 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GCD14 PF08704.10 gi|332796503|ref|YP_004458003.1| - 0.11 12.2 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit SpoU_methylase PF00588.19 gi|332796504|ref|YP_004458004.1| - 3.5e-33 114.8 0.0 4.5e-33 114.4 0.0 1.1 1 0 0 1 1 1 1 SpoU rRNA Methylase family Methyltrn_RNA_4 PF09936.9 gi|332796504|ref|YP_004458004.1| - 0.00031 20.7 0.0 0.015 15.1 0.0 2.2 1 1 0 1 1 1 1 SAM-dependent RNA methyltransferase Ribosomal_S3Ae PF01015.18 gi|332796505|ref|YP_004458005.1| - 7.4e-66 221.6 0.7 8.5e-66 221.4 0.7 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family NTP_transferase PF00483.23 gi|332796506|ref|YP_004458006.1| - 1.2e-35 123.3 0.0 1.7e-35 122.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|332796506|ref|YP_004458006.1| - 1.4e-18 65.8 14.1 2.7e-08 33.2 1.6 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|332796506|ref|YP_004458006.1| - 9e-13 48.9 0.0 1.3e-12 48.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|332796506|ref|YP_004458006.1| - 2.8e-08 33.8 0.0 5e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|332796506|ref|YP_004458006.1| - 2.2e-05 24.1 6.8 0.016 14.9 0.1 3.6 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase SF3a60_bindingd PF12108.8 gi|332796506|ref|YP_004458006.1| - 0.017 15.0 0.9 0.017 15.0 0.9 1.8 2 0 0 2 2 2 0 Splicing factor SF3a60 binding domain NTP_transf_4 PF13562.6 gi|332796506|ref|YP_004458006.1| - 0.027 14.7 0.3 26 5.0 0.0 3.2 3 0 0 3 3 3 0 Sugar nucleotidyl transferase Fucokinase PF07959.12 gi|332796506|ref|YP_004458006.1| - 0.034 13.1 0.1 0.083 11.8 0.1 1.6 1 1 1 2 2 2 0 L-fucokinase DUF2987 PF11205.8 gi|332796506|ref|YP_004458006.1| - 0.098 12.6 0.0 0.16 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2987) MMR_HSR1_C PF08438.10 gi|332796507|ref|YP_004458007.1| - 4.5e-36 123.8 0.1 7.7e-36 123.1 0.1 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|332796507|ref|YP_004458007.1| - 1.1e-21 77.0 0.2 1.7e-20 73.2 0.0 2.5 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|332796507|ref|YP_004458007.1| - 7.3e-13 48.4 0.1 1.4e-12 47.5 0.1 1.4 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|332796507|ref|YP_004458007.1| - 5.5e-06 26.0 0.3 3.4e-05 23.4 0.2 2.3 3 0 0 3 3 3 1 Ferrous iron transport protein B YchF-GTPase_C PF06071.13 gi|332796507|ref|YP_004458007.1| - 0.00031 20.9 0.1 0.022 14.9 0.0 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF933) Lip_prot_lig_C PF10437.9 gi|332796507|ref|YP_004458007.1| - 0.093 12.7 0.1 0.19 11.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial lipoate protein ligase C-terminus Ribosomal_L15e PF00827.17 gi|332796508|ref|YP_004458008.1| - 2.2e-71 239.5 5.2 2.2e-71 239.5 5.2 1.2 1 1 0 1 1 1 1 Ribosomal L15 RNA_binding PF01877.17 gi|332796509|ref|YP_004458009.1| - 2.5e-30 105.2 3.2 3.4e-30 104.8 3.2 1.2 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|332796510|ref|YP_004458010.1| - 2.9e-07 30.2 0.0 1.3e-05 24.7 0.1 2.1 2 0 0 2 2 2 2 RNase P subunit p30 RNase_P_Rpp14 PF01900.19 gi|332796511|ref|YP_004458011.1| - 1.6e-14 54.0 0.0 2.2e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|332796512|ref|YP_004458012.1| - 7.4e-59 198.4 0.0 1.1e-58 197.9 0.0 1.2 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|332796512|ref|YP_004458012.1| - 3.2e-13 49.1 0.9 8.3e-13 47.8 0.5 1.9 2 0 0 2 2 2 1 Proteasome subunit A N-terminal signature CAT_RBD PF03123.15 gi|332796512|ref|YP_004458012.1| - 0.13 12.2 0.0 0.31 11.0 0.0 1.6 1 0 0 1 1 1 0 CAT RNA binding domain SBDS PF01172.18 gi|332796513|ref|YP_004458013.1| - 1.1e-24 86.3 0.1 2.3e-24 85.2 0.1 1.6 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|332796513|ref|YP_004458013.1| - 2.5e-21 75.8 0.8 3.9e-21 75.2 0.8 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain EFG_C PF00679.24 gi|332796513|ref|YP_004458013.1| - 0.00088 19.3 0.0 0.0018 18.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus DUF1949 PF09186.11 gi|332796513|ref|YP_004458013.1| - 0.041 13.7 0.2 0.92 9.4 0.0 3.0 4 0 0 4 4 4 0 Domain of unknown function (DUF1949) KH_6 PF15985.5 gi|332796514|ref|YP_004458014.1| - 1.3e-06 28.6 0.0 2.7e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|332796514|ref|YP_004458014.1| - 0.0085 15.9 0.1 0.026 14.3 0.1 2.0 1 1 0 1 1 1 1 KH domain S1 PF00575.23 gi|332796514|ref|YP_004458014.1| - 0.012 16.0 0.0 0.035 14.5 0.0 1.8 2 0 0 2 2 2 0 S1 RNA binding domain RNase_PH PF01138.21 gi|332796515|ref|YP_004458015.1| - 7.2e-35 120.4 0.0 9.5e-35 120.0 0.0 1.2 1 0 0 1 1 1 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|332796515|ref|YP_004458015.1| - 9.4e-13 48.0 0.1 1.7e-12 47.2 0.1 1.5 1 0 0 1 1 1 1 3' exoribonuclease family, domain 2 RNase_PH PF01138.21 gi|332796516|ref|YP_004458016.1| - 9.9e-33 113.4 0.0 1.9e-32 112.6 0.0 1.4 2 0 0 2 2 2 1 3' exoribonuclease family, domain 1 RNase_PH_C PF03725.15 gi|332796516|ref|YP_004458016.1| - 1.3e-09 38.0 0.1 4.4e-09 36.2 0.1 1.9 2 0 0 2 2 2 1 3' exoribonuclease family, domain 2 Ribosomal_L37ae PF01780.19 gi|332796517|ref|YP_004458017.1| - 2e-25 88.7 7.6 2.2e-25 88.5 7.6 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|332796517|ref|YP_004458017.1| - 0.001 19.0 4.4 0.0016 18.4 4.3 1.4 1 1 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796517|ref|YP_004458017.1| - 0.014 15.3 0.8 0.019 14.9 0.8 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|332796517|ref|YP_004458017.1| - 0.019 14.5 0.1 0.027 14.0 0.1 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding PHD PF00628.29 gi|332796517|ref|YP_004458017.1| - 0.02 14.8 2.8 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 PHD-finger DUF4379 PF14311.6 gi|332796517|ref|YP_004458017.1| - 0.024 15.0 5.7 1.8 9.0 0.8 2.1 2 0 0 2 2 2 0 Probable Zinc-ribbon domain zf-TFIIB PF13453.6 gi|332796517|ref|YP_004458017.1| - 0.028 13.8 0.5 0.045 13.1 0.5 1.3 1 0 0 1 1 1 0 Transcription factor zinc-finger DnaJ_CXXCXGXG PF00684.19 gi|332796517|ref|YP_004458017.1| - 0.043 14.2 0.3 0.055 13.8 0.3 1.2 1 0 0 1 1 1 0 DnaJ central domain Endonuclease_7 PF02945.15 gi|332796517|ref|YP_004458017.1| - 0.1 12.5 1.1 0.23 11.4 1.1 1.6 1 1 1 2 2 2 0 Recombination endonuclease VII Zn_ribbon_SprT PF17283.2 gi|332796517|ref|YP_004458017.1| - 0.13 12.2 6.8 0.17 11.8 5.1 2.0 1 1 1 2 2 2 0 SprT-like zinc ribbon domain HMG_CoA_synt_C PF08540.10 gi|332796517|ref|YP_004458017.1| - 0.14 11.7 0.0 0.15 11.7 0.0 1.0 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A synthase C terminal Pcc1 PF09341.10 gi|332796518|ref|YP_004458018.1| - 0.01 16.0 0.0 0.012 15.7 0.0 1.3 1 1 0 1 1 1 0 Transcription factor Pcc1 Prefoldin_2 PF01920.20 gi|332796519|ref|YP_004458019.1| - 6.3e-24 84.0 12.8 7.1e-24 83.8 12.8 1.0 1 0 0 1 1 1 1 Prefoldin subunit UPF0449 PF15136.6 gi|332796519|ref|YP_004458019.1| - 0.0066 16.9 1.7 0.0066 16.9 1.7 1.9 1 1 1 2 2 2 1 Uncharacterised protein family UPF0449 ALIX_LYPXL_bnd PF13949.6 gi|332796519|ref|YP_004458019.1| - 0.027 13.8 6.4 0.035 13.4 6.4 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.9 gi|332796519|ref|YP_004458019.1| - 0.031 14.3 0.8 0.031 14.3 0.8 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FlaC_arch PF05377.11 gi|332796519|ref|YP_004458019.1| - 0.082 13.3 8.4 0.47 10.9 0.9 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) Lip_prot_lig_C PF10437.9 gi|332796519|ref|YP_004458019.1| - 0.083 12.9 1.4 0.97 9.5 0.3 2.2 2 1 0 2 2 2 0 Bacterial lipoate protein ligase C-terminus Laminin_II PF06009.12 gi|332796519|ref|YP_004458019.1| - 0.096 12.7 6.4 0.3 11.1 0.5 2.1 1 1 1 2 2 2 0 Laminin Domain II NPV_P10 PF05531.12 gi|332796519|ref|YP_004458019.1| - 0.51 10.8 7.6 0.31 11.5 2.3 2.4 1 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DASH_Dam1 PF08653.10 gi|332796519|ref|YP_004458019.1| - 0.63 9.9 2.7 40 4.1 0.0 3.0 2 1 1 3 3 3 0 DASH complex subunit Dam1 Nup54 PF13874.6 gi|332796519|ref|YP_004458019.1| - 1 9.5 7.2 26 4.9 7.2 2.2 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 APG6_N PF17675.1 gi|332796519|ref|YP_004458019.1| - 3.3 8.2 11.6 0.94 10.0 2.5 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region DUF3552 PF12072.8 gi|332796519|ref|YP_004458019.1| - 8.9 5.7 15.5 7.8 5.9 1.7 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF3552) ERCC4 PF02732.15 gi|332796520|ref|YP_004458020.1| - 9.5e-24 84.4 1.0 9.5e-24 84.4 1.0 1.7 2 0 0 2 2 2 1 ERCC4 domain HHH_2 PF12826.7 gi|332796520|ref|YP_004458020.1| - 2.4e-05 24.3 0.0 9e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|332796520|ref|YP_004458020.1| - 0.0012 19.4 0.0 0.01 16.4 0.0 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix domain 5_3_exonuc PF01367.20 gi|332796520|ref|YP_004458020.1| - 0.025 15.1 0.1 0.099 13.2 0.0 2.0 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold GTP_EFTU PF00009.27 gi|332796521|ref|YP_004458021.1| - 4.3e-62 209.1 0.3 4.3e-62 209.1 0.3 1.7 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|332796521|ref|YP_004458021.1| - 2.8e-30 104.6 0.0 2.3e-29 101.6 0.0 2.5 1 1 1 2 2 2 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|332796521|ref|YP_004458021.1| - 6.7e-24 83.8 0.1 1.7e-23 82.5 0.1 1.8 1 0 0 1 1 1 1 Elongation Factor G, domain II EFG_C PF00679.24 gi|332796521|ref|YP_004458021.1| - 9.5e-22 76.9 0.0 2.6e-21 75.4 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G C-terminus GTP_EFTU_D2 PF03144.25 gi|332796521|ref|YP_004458021.1| - 2.7e-14 53.3 0.0 1.2e-13 51.2 0.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|332796521|ref|YP_004458021.1| - 0.00055 20.0 0.1 0.0013 18.8 0.1 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase CdiA_C PF18451.1 gi|332796521|ref|YP_004458021.1| - 0.023 14.9 0.7 0.062 13.5 0.7 1.8 1 0 0 1 1 1 0 Contact-dependent growth inhibition CdiA C-terminal domain RF3_C PF16658.5 gi|332796521|ref|YP_004458021.1| - 0.035 13.9 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain RPW8 PF05659.11 gi|332796521|ref|YP_004458021.1| - 0.11 12.1 1.0 1.5 8.6 0.1 2.3 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 HAD_2 PF13419.6 gi|332796522|ref|YP_004458022.1| - 2.8e-21 76.4 0.0 4e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|332796522|ref|YP_004458022.1| - 2.9e-15 57.1 0.0 3.6e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|332796522|ref|YP_004458022.1| - 2e-09 37.4 0.0 3.7e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|332796522|ref|YP_004458022.1| - 0.015 15.4 0.0 0.042 14.0 0.0 1.9 1 1 1 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF4159 PF13709.6 gi|332796522|ref|YP_004458022.1| - 0.043 13.2 0.0 0.062 12.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Peptidase_M28 PF04389.17 gi|332796523|ref|YP_004458023.1| - 9.1e-10 38.5 0.0 4.3e-09 36.3 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M28 DUF447 PF04289.12 gi|332796524|ref|YP_004458024.1| - 3.5e-35 121.4 0.2 4.2e-35 121.1 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Iso_dh PF00180.20 gi|332796525|ref|YP_004458025.1| - 3.2e-99 332.4 0.8 3.7e-99 332.2 0.8 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase PdxA PF04166.12 gi|332796525|ref|YP_004458025.1| - 0.01 15.3 0.0 0.027 13.9 0.0 1.7 1 0 0 1 1 1 0 Pyridoxal phosphate biosynthetic protein PdxA tRNA-synt_1 PF00133.22 gi|332796526|ref|YP_004458026.1| - 6.9e-182 605.9 3.4 9e-182 605.5 3.4 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|332796526|ref|YP_004458026.1| - 9.4e-28 97.1 0.7 2.2e-27 95.9 0.7 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|332796526|ref|YP_004458026.1| - 9.1e-22 77.3 1.1 1e-07 31.1 0.0 4.7 4 1 0 4 4 4 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|332796526|ref|YP_004458026.1| - 0.00019 21.0 1.3 0.00059 19.4 0.2 2.4 3 0 0 3 3 3 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|332796526|ref|YP_004458026.1| - 0.0091 15.4 0.9 0.13 11.6 0.0 2.9 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain zf-TFIIB PF13453.6 gi|332796526|ref|YP_004458026.1| - 0.13 11.6 0.1 6.1 6.3 0.0 2.8 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|332796526|ref|YP_004458026.1| - 0.19 11.9 0.3 1.6 8.9 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|332796526|ref|YP_004458026.1| - 1.3 8.9 2.9 15 5.4 0.9 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Methyltrn_RNA_3 PF02598.17 gi|332796527|ref|YP_004458027.1| - 1.4e-13 51.0 0.2 1.9e-09 37.5 0.1 2.1 1 1 0 2 2 2 2 Putative RNA methyltransferase Ribosomal_L3 PF00297.22 gi|332796528|ref|YP_004458028.1| - 2.1e-72 244.1 0.0 2.9e-72 243.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|332796529|ref|YP_004458029.1| - 3e-38 131.5 0.0 3.5e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L12 PF00542.19 gi|332796529|ref|YP_004458029.1| - 0.21 12.0 0.1 0.21 12.0 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein L7/L12 C-terminal domain Ribosomal_L23 PF00276.20 gi|332796530|ref|YP_004458030.1| - 3e-12 46.7 8.3 2.2e-11 44.0 8.3 1.8 1 1 0 1 1 1 1 Ribosomal protein L23 NKWYS PF10364.9 gi|332796530|ref|YP_004458030.1| - 0.01 16.0 0.7 0.012 15.8 0.7 1.1 1 0 0 1 1 1 0 Putative capsular polysaccharide synthesis protein Ribosomal_L2_C PF03947.18 gi|332796531|ref|YP_004458031.1| - 1.6e-43 147.9 2.1 2.4e-43 147.4 1.5 1.5 2 0 0 2 2 2 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|332796531|ref|YP_004458031.1| - 2.9e-14 52.8 0.3 8.9e-14 51.2 0.1 1.9 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.21 gi|332796532|ref|YP_004458032.1| - 1.2e-31 108.4 0.6 1.6e-31 108.0 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 RNA_pol_Rpb2_4 PF04566.13 gi|332796532|ref|YP_004458032.1| - 0.012 15.9 0.4 0.022 15.1 0.3 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 4 MerR_1 PF13411.6 gi|332796532|ref|YP_004458032.1| - 0.02 15.0 0.6 0.064 13.4 0.4 1.9 2 0 0 2 2 2 0 MerR HTH family regulatory protein bZIP_Maf PF03131.17 gi|332796532|ref|YP_004458032.1| - 0.069 13.7 1.2 0.13 12.8 1.2 1.4 1 0 0 1 1 1 0 bZIP Maf transcription factor Ribosomal_L22 PF00237.19 gi|332796533|ref|YP_004458033.1| - 3.7e-28 97.8 0.1 4.3e-28 97.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e CHAT PF12770.7 gi|332796533|ref|YP_004458033.1| - 0.11 11.9 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 CHAT domain Smr PF01713.21 gi|332796533|ref|YP_004458033.1| - 0.12 12.8 0.0 0.23 11.8 0.0 1.4 1 1 0 1 1 1 0 Smr domain Ribosomal_S3_C PF00189.20 gi|332796534|ref|YP_004458034.1| - 1.1e-22 80.3 1.2 2.1e-22 79.4 1.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|332796534|ref|YP_004458034.1| - 3.8e-16 58.7 0.0 7.5e-16 57.7 0.0 1.5 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|332796534|ref|YP_004458034.1| - 0.016 15.0 1.8 0.079 12.8 0.5 2.5 2 0 0 2 2 2 0 KH domain PrpR_N PF06506.11 gi|332796534|ref|YP_004458034.1| - 0.032 13.8 0.8 0.14 11.8 0.2 2.0 1 1 0 2 2 2 0 Propionate catabolism activator Ribosomal_L29 PF00831.23 gi|332796535|ref|YP_004458035.1| - 5.6e-19 67.9 2.1 6.8e-19 67.6 2.1 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.16 gi|332796536|ref|YP_004458036.1| - 1.3e-12 47.4 0.0 1.6e-12 47.1 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 DUF4926 PF16277.5 gi|332796536|ref|YP_004458036.1| - 0.12 11.7 0.0 0.24 10.8 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4926) Ribosomal_S17 PF00366.20 gi|332796537|ref|YP_004458037.1| - 1.3e-19 70.1 0.1 1.6e-19 69.7 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|332796537|ref|YP_004458037.1| - 1.4e-05 25.3 0.1 3e-05 24.3 0.1 1.5 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|332796538|ref|YP_004458038.1| - 2.2e-37 127.9 0.1 2.7e-37 127.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e PAS_3 PF08447.12 gi|332796538|ref|YP_004458038.1| - 0.044 14.1 0.0 0.085 13.2 0.0 1.5 1 0 0 1 1 1 0 PAS fold Ribosomal_L26 PF16906.5 gi|332796539|ref|YP_004458039.1| - 9.8e-31 106.1 0.9 1.3e-30 105.7 0.9 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|332796539|ref|YP_004458039.1| - 1.1e-06 28.3 3.2 1.3e-06 28.1 2.1 1.8 2 0 0 2 2 2 1 KOW motif SH3_2 PF07653.17 gi|332796539|ref|YP_004458039.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Variant SH3 domain Ribosomal_S4e PF00900.20 gi|332796540|ref|YP_004458040.1| - 8e-23 80.2 1.2 3.2e-22 78.2 0.1 2.2 2 0 0 2 2 2 1 Ribosomal family S4e S4 PF01479.25 gi|332796540|ref|YP_004458040.1| - 4.8e-11 42.2 0.1 2.5e-10 39.9 0.0 2.2 2 0 0 2 2 2 1 S4 domain RS4NT PF08071.12 gi|332796540|ref|YP_004458040.1| - 1.7e-07 31.2 2.2 2.8e-07 30.5 2.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4_2 PF13275.6 gi|332796540|ref|YP_004458040.1| - 0.06 13.2 0.1 0.29 11.0 0.0 2.1 2 0 0 2 2 2 0 S4 domain KOW PF00467.29 gi|332796540|ref|YP_004458040.1| - 0.11 12.4 0.3 0.25 11.3 0.3 1.6 1 0 0 1 1 1 0 KOW motif Ribosomal_L5_C PF00673.21 gi|332796541|ref|YP_004458041.1| - 2.1e-25 88.7 0.0 7.7e-25 86.9 0.0 1.9 2 0 0 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|332796541|ref|YP_004458041.1| - 2.8e-21 75.6 0.0 5.6e-21 74.6 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|332796542|ref|YP_004458042.1| - 4.1e-11 42.5 1.8 4.3e-11 42.4 1.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e Ribosomal_L37ae PF01780.19 gi|332796542|ref|YP_004458042.1| - 0.021 14.9 0.5 0.024 14.7 0.5 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family RNA_POL_M_15KD PF02150.16 gi|332796542|ref|YP_004458042.1| - 1.5 8.7 5.2 3.7 7.5 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Ribosomal_S8 PF00410.19 gi|332796543|ref|YP_004458043.1| - 1.6e-24 86.3 0.2 2.4e-24 85.7 0.2 1.3 1 1 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|332796544|ref|YP_004458044.1| - 2.3e-27 95.5 9.5 9.2e-15 55.1 1.2 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 TubC_N PF18563.1 gi|332796544|ref|YP_004458044.1| - 0.016 15.1 0.5 1.6 8.7 0.0 2.6 2 1 1 3 3 3 0 TubC N-terminal docking domain DUF2196 PF09962.9 gi|332796544|ref|YP_004458044.1| - 0.039 13.9 0.9 0.28 11.2 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2196) DNA_pol3_beta PF00712.19 gi|332796544|ref|YP_004458044.1| - 0.096 12.8 0.5 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain YbbR PF07949.12 gi|332796544|ref|YP_004458044.1| - 0.17 12.2 4.6 4.4 7.7 0.1 2.7 2 1 1 3 3 3 0 YbbR-like protein Ribosomal_L32e PF01655.18 gi|332796545|ref|YP_004458045.1| - 8.8e-34 116.2 0.0 1.2e-33 115.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L32 Glyco_hydro_48 PF02011.15 gi|332796545|ref|YP_004458045.1| - 0.2 10.2 0.4 0.24 9.9 0.4 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 48 Ribosomal_L19e PF01280.20 gi|332796546|ref|YP_004458046.1| - 2.6e-46 157.3 9.9 2.9e-46 157.1 9.9 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|332796547|ref|YP_004458047.1| - 6.3e-26 91.3 4.2 1.6e-17 64.0 1.8 2.5 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18_c PF14204.6 gi|332796547|ref|YP_004458047.1| - 3.4e-10 40.7 0.0 5.8e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 C-terminal region Ribosomal_L18p PF00861.22 gi|332796547|ref|YP_004458047.1| - 0.00014 22.2 0.0 0.00019 21.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5 PF00333.20 gi|332796548|ref|YP_004458048.1| - 1.5e-24 85.7 1.2 2.8e-24 84.9 0.8 1.7 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|332796548|ref|YP_004458048.1| - 9.2e-22 76.3 0.0 2.1e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L27A PF00828.19 gi|332796550|ref|YP_004458050.1| - 2.3e-15 57.4 4.0 4e-15 56.6 4.0 1.4 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DEDD_Tnp_IS110 PF01548.17 gi|332796550|ref|YP_004458050.1| - 0.081 12.8 0.0 0.1 12.5 0.0 1.1 1 0 0 1 1 1 0 Transposase SecY PF00344.20 gi|332796551|ref|YP_004458051.1| - 2.7e-58 197.6 29.9 4.2e-58 197.0 29.9 1.3 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|332796551|ref|YP_004458051.1| - 2e-09 37.1 1.1 2e-09 37.1 1.1 2.3 2 0 0 2 2 2 1 Plug domain of Sec61p AAA_17 PF13207.6 gi|332796552|ref|YP_004458052.1| - 8.5e-33 113.7 0.0 1e-32 113.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796552|ref|YP_004458052.1| - 1.7e-05 25.4 0.0 2.3e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|332796552|ref|YP_004458052.1| - 0.00012 22.1 0.0 0.00019 21.4 0.0 1.5 1 0 0 1 1 1 1 NTPase ATP_bind_1 PF03029.17 gi|332796552|ref|YP_004458052.1| - 0.00012 22.0 0.0 0.00017 21.5 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Thymidylate_kin PF02223.17 gi|332796552|ref|YP_004458052.1| - 0.0014 18.4 0.1 1.4 8.6 0.0 2.4 2 1 0 2 2 2 2 Thymidylate kinase SRP54 PF00448.22 gi|332796552|ref|YP_004458052.1| - 0.0024 17.5 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_22 PF13401.6 gi|332796552|ref|YP_004458052.1| - 0.0053 17.0 0.2 0.0074 16.6 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|332796552|ref|YP_004458052.1| - 0.007 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|332796552|ref|YP_004458052.1| - 0.008 16.2 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MeaB PF03308.16 gi|332796552|ref|YP_004458052.1| - 0.011 14.7 0.1 0.022 13.8 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_16 PF13191.6 gi|332796552|ref|YP_004458052.1| - 0.015 15.7 0.0 0.019 15.4 0.0 1.3 1 1 0 1 1 1 0 AAA ATPase domain KTI12 PF08433.10 gi|332796552|ref|YP_004458052.1| - 0.025 14.0 0.0 0.032 13.7 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_28 PF13521.6 gi|332796552|ref|YP_004458052.1| - 0.032 14.5 0.0 0.039 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|332796552|ref|YP_004458052.1| - 0.032 14.5 0.1 0.056 13.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|332796552|ref|YP_004458052.1| - 0.038 14.4 0.0 0.067 13.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2075 PF09848.9 gi|332796552|ref|YP_004458052.1| - 0.047 12.9 0.0 0.056 12.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|332796552|ref|YP_004458052.1| - 0.054 12.7 0.0 0.074 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain cobW PF02492.19 gi|332796552|ref|YP_004458052.1| - 0.08 12.5 0.1 0.17 11.5 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.18 gi|332796552|ref|YP_004458052.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase CbiA PF01656.23 gi|332796552|ref|YP_004458052.1| - 0.14 12.2 0.0 0.17 11.9 0.0 1.2 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Ribosomal_L34e PF01199.18 gi|332796554|ref|YP_004458054.1| - 6.2e-17 61.7 0.4 7.4e-17 61.5 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L34e DUF4428 PF14471.6 gi|332796554|ref|YP_004458054.1| - 0.0045 16.9 0.6 3 7.9 0.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4428) DZR PF12773.7 gi|332796554|ref|YP_004458054.1| - 0.025 14.6 0.1 0.037 14.1 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon Zn_ribbon_recom PF13408.6 gi|332796554|ref|YP_004458054.1| - 0.037 14.5 0.3 0.062 13.8 0.3 1.4 1 0 0 1 1 1 0 Recombinase zinc beta ribbon domain FpoO PF10621.9 gi|332796554|ref|YP_004458054.1| - 0.039 14.3 0.1 0.057 13.7 0.1 1.2 1 0 0 1 1 1 0 F420H2 dehydrogenase subunit FpoO Gin PF10764.9 gi|332796554|ref|YP_004458054.1| - 0.067 13.2 0.2 0.76 9.8 0.0 2.1 2 0 0 2 2 2 0 Inhibitor of sigma-G Gin zf-CCHC_2 PF13696.6 gi|332796554|ref|YP_004458054.1| - 6.9 6.6 9.2 0.94 9.4 2.0 2.2 2 0 0 2 2 2 0 Zinc knuckle Cytidylate_kin2 PF13189.6 gi|332796555|ref|YP_004458055.1| - 4.2e-21 75.9 0.3 6e-19 68.9 0.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|332796555|ref|YP_004458055.1| - 1.3e-16 61.3 0.1 1.7e-16 60.9 0.1 1.2 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|332796555|ref|YP_004458055.1| - 2.3e-15 56.9 0.0 8.6e-09 35.4 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|332796555|ref|YP_004458055.1| - 3.6e-14 53.3 0.3 5.5e-14 52.8 0.3 1.4 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|332796555|ref|YP_004458055.1| - 2.5e-07 31.0 0.7 7.7e-07 29.4 0.7 1.8 1 1 0 1 1 1 1 Shikimate kinase dNK PF01712.19 gi|332796555|ref|YP_004458055.1| - 4.1e-06 26.8 2.0 0.0024 17.7 0.0 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase ADK PF00406.22 gi|332796555|ref|YP_004458055.1| - 7.1e-06 26.2 0.0 9.4e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|332796555|ref|YP_004458055.1| - 3.4e-05 24.0 0.0 6.2e-05 23.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332796555|ref|YP_004458055.1| - 3.6e-05 24.2 0.1 0.00012 22.6 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|332796555|ref|YP_004458055.1| - 4.5e-05 23.7 0.0 6.6e-05 23.2 0.0 1.3 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|332796555|ref|YP_004458055.1| - 0.00015 21.5 0.5 0.033 13.9 0.1 2.3 1 1 0 2 2 2 1 Thymidylate kinase CoaE PF01121.20 gi|332796555|ref|YP_004458055.1| - 0.00019 21.1 0.1 0.013 15.2 0.0 2.2 1 1 1 2 2 2 1 Dephospho-CoA kinase PRK PF00485.18 gi|332796555|ref|YP_004458055.1| - 0.00038 20.3 0.0 0.0006 19.6 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|332796555|ref|YP_004458055.1| - 0.00038 20.4 0.0 0.00066 19.6 0.0 1.6 1 0 0 1 1 1 1 Rad17 P-loop domain ABC_tran PF00005.27 gi|332796555|ref|YP_004458055.1| - 0.00044 20.8 0.0 0.00051 20.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|332796555|ref|YP_004458055.1| - 0.00045 20.5 0.0 0.00062 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332796555|ref|YP_004458055.1| - 0.0016 18.8 0.1 0.0017 18.7 0.1 1.3 1 1 0 1 1 1 1 AAA ATPase domain CbiA PF01656.23 gi|332796555|ref|YP_004458055.1| - 0.0024 17.9 0.7 0.18 11.9 0.1 2.3 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain T2SSE PF00437.20 gi|332796555|ref|YP_004458055.1| - 0.0045 16.1 0.7 0.0099 15.0 0.4 1.6 1 1 0 1 1 1 1 Type II/IV secretion system protein APS_kinase PF01583.20 gi|332796555|ref|YP_004458055.1| - 0.0056 16.6 0.0 0.0072 16.2 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_5 PF07728.14 gi|332796555|ref|YP_004458055.1| - 0.0058 16.6 0.0 0.0089 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|332796555|ref|YP_004458055.1| - 0.012 16.0 0.1 0.027 14.9 0.1 1.7 1 1 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|332796555|ref|YP_004458055.1| - 0.012 15.3 0.0 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NTPase_1 PF03266.15 gi|332796555|ref|YP_004458055.1| - 0.022 14.7 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 NTPase AAA_24 PF13479.6 gi|332796555|ref|YP_004458055.1| - 0.025 14.3 0.4 0.056 13.2 0.2 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|332796555|ref|YP_004458055.1| - 0.028 14.0 0.7 0.67 9.5 0.0 2.1 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain Viral_helicase1 PF01443.18 gi|332796555|ref|YP_004458055.1| - 0.038 13.7 0.0 0.056 13.2 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_14 PF13173.6 gi|332796555|ref|YP_004458055.1| - 0.043 13.8 0.2 0.12 12.4 0.2 1.8 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|332796555|ref|YP_004458055.1| - 0.063 12.6 0.1 0.086 12.1 0.1 1.4 1 1 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|332796555|ref|YP_004458055.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Guanylate_kin PF00625.21 gi|332796555|ref|YP_004458055.1| - 0.065 12.9 0.8 0.49 10.1 0.0 2.3 1 1 1 2 2 2 0 Guanylate kinase AAA_30 PF13604.6 gi|332796555|ref|YP_004458055.1| - 0.082 12.6 0.2 0.45 10.2 0.1 1.9 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|332796555|ref|YP_004458055.1| - 0.11 12.3 0.4 0.3 10.9 0.4 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain CPT PF07931.12 gi|332796555|ref|YP_004458055.1| - 0.13 12.1 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_23 PF13476.6 gi|332796555|ref|YP_004458055.1| - 0.19 12.2 0.6 0.19 12.2 0.6 2.1 1 1 1 2 2 2 0 AAA domain Archease PF01951.16 gi|332796558|ref|YP_004458058.1| - 1.9e-43 148.0 0.6 2.1e-43 147.9 0.6 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Mu-transpos_C PF09299.11 gi|332796558|ref|YP_004458058.1| - 0.019 14.9 0.0 0.054 13.5 0.0 1.7 1 1 0 1 1 1 0 Mu transposase, C-terminal TPR_2 PF07719.17 gi|332796559|ref|YP_004458059.1| - 0.18 12.0 0.6 1.1 9.6 0.1 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat NAD_binding_8 PF13450.6 gi|332796561|ref|YP_004458061.1| - 0.00039 20.6 0.0 0.00074 19.7 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Porin_OmpG_1_2 PF16946.5 gi|332796563|ref|YP_004458063.1| - 0.027 13.7 0.0 0.027 13.7 0.0 1.1 1 0 0 1 1 1 0 OMPG-porin 1 family SIS PF01380.22 gi|332796564|ref|YP_004458064.1| - 8e-16 58.1 0.1 1.4e-15 57.3 0.1 1.4 1 0 0 1 1 1 1 SIS domain SIS_2 PF13580.6 gi|332796564|ref|YP_004458064.1| - 1.3e-06 28.4 2.5 4.3e-05 23.6 0.3 2.3 1 1 1 2 2 2 2 SIS domain PRMT5 PF05185.16 gi|332796564|ref|YP_004458064.1| - 0.0019 18.1 0.8 0.94 9.3 0.1 2.3 1 1 1 2 2 2 2 PRMT5 arginine-N-methyltransferase LigB PF02900.18 gi|332796564|ref|YP_004458064.1| - 0.18 10.9 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Catalytic LigB subunit of aromatic ring-opening dioxygenase AAA_10 PF12846.7 gi|332796565|ref|YP_004458065.1| - 2.1e-10 40.0 0.0 8.5e-07 28.2 0.0 2.5 2 1 1 3 3 3 2 AAA-like domain TrwB_AAD_bind PF10412.9 gi|332796565|ref|YP_004458065.1| - 9.3e-07 28.1 0.0 0.0015 17.5 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain DUF853 PF05872.12 gi|332796565|ref|YP_004458065.1| - 3.7e-06 25.8 0.0 0.013 14.1 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.18 gi|332796565|ref|YP_004458065.1| - 2.3e-05 23.9 0.1 0.0004 19.8 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family DUF87 PF01935.17 gi|332796565|ref|YP_004458065.1| - 0.00039 20.6 0.7 0.00039 20.6 0.7 2.0 2 1 0 2 2 2 1 Helicase HerA, central domain T4SS-DNA_transf PF02534.14 gi|332796565|ref|YP_004458065.1| - 0.0031 16.4 0.2 0.097 11.5 0.0 2.2 2 0 0 2 2 2 1 Type IV secretory system Conjugative DNA transfer ResIII PF04851.15 gi|332796565|ref|YP_004458065.1| - 0.0052 16.8 0.0 0.026 14.5 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|332796565|ref|YP_004458065.1| - 0.052 13.8 0.0 0.38 11.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain Cloacin_immun PF03513.14 gi|332796566|ref|YP_004458066.1| - 0.04 14.3 0.2 0.13 12.6 0.1 1.9 2 0 0 2 2 2 0 Cloacin immunity protein Semialdhyde_dh PF01118.24 gi|332796567|ref|YP_004458067.1| - 5.9e-34 117.1 0.0 3e-33 114.8 0.0 2.0 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|332796567|ref|YP_004458067.1| - 5.1e-09 36.5 0.0 6.6e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Sacchrp_dh_NADP PF03435.18 gi|332796567|ref|YP_004458067.1| - 0.2 11.9 0.0 0.32 11.3 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain AA_kinase PF00696.28 gi|332796568|ref|YP_004458068.1| - 2.8e-30 105.7 6.0 3.2e-30 105.5 6.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Cro PF09048.10 gi|332796568|ref|YP_004458068.1| - 0.23 11.5 3.3 1.4 9.0 0.1 2.9 3 0 0 3 3 3 0 Cro HTH_24 PF13412.6 gi|332796569|ref|YP_004458069.1| - 7e-13 47.9 4.3 1.1e-12 47.3 2.5 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|332796569|ref|YP_004458069.1| - 4.3e-12 45.8 0.1 7.5e-12 45.1 0.1 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|332796569|ref|YP_004458069.1| - 5.9e-11 42.0 0.1 1.2e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|332796569|ref|YP_004458069.1| - 6.3e-05 22.8 0.9 6.3e-05 22.8 0.9 2.4 3 0 0 3 3 3 1 HTH domain HTH_Mga PF08280.11 gi|332796569|ref|YP_004458069.1| - 0.0001 22.3 0.9 0.00025 21.0 0.9 1.7 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain NapD PF03927.13 gi|332796569|ref|YP_004458069.1| - 0.00065 19.7 0.7 0.0012 18.8 0.6 1.6 1 1 0 1 1 1 1 NapD protein DUF2250 PF10007.9 gi|332796569|ref|YP_004458069.1| - 0.0012 18.9 0.5 0.0036 17.4 0.2 1.8 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) DUF4423 PF14394.6 gi|332796569|ref|YP_004458069.1| - 0.0012 18.6 0.4 0.0015 18.2 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR PF01047.22 gi|332796569|ref|YP_004458069.1| - 0.0025 17.7 0.2 0.0077 16.1 0.2 1.8 2 0 0 2 2 2 1 MarR family HTH_9 PF08221.11 gi|332796569|ref|YP_004458069.1| - 0.0044 17.1 0.1 0.0097 16.0 0.1 1.6 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_36 PF13730.6 gi|332796569|ref|YP_004458069.1| - 0.0057 16.6 0.2 0.012 15.5 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|332796569|ref|YP_004458069.1| - 0.011 15.6 0.3 0.028 14.3 0.2 1.8 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|332796569|ref|YP_004458069.1| - 0.012 15.9 0.4 0.045 14.0 0.2 1.9 2 1 0 2 2 2 0 Rio2, N-terminal HTH_DeoR PF08220.12 gi|332796569|ref|YP_004458069.1| - 0.025 14.3 0.3 0.052 13.3 0.3 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|332796569|ref|YP_004458069.1| - 0.039 14.0 0.0 0.064 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|332796569|ref|YP_004458069.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family YjcQ PF09639.10 gi|332796569|ref|YP_004458069.1| - 0.079 13.2 1.7 0.12 12.6 0.3 2.0 1 1 1 2 2 2 0 YjcQ protein MarR_2 PF12802.7 gi|332796569|ref|YP_004458069.1| - 0.095 12.6 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_6 PF01418.17 gi|332796569|ref|YP_004458069.1| - 0.098 12.6 0.2 0.2 11.7 0.2 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family PAX PF00292.18 gi|332796569|ref|YP_004458069.1| - 0.098 12.6 0.8 0.68 9.9 0.8 2.1 1 1 0 1 1 1 0 'Paired box' domain FeoC PF09012.10 gi|332796569|ref|YP_004458069.1| - 0.14 12.3 0.0 0.21 11.7 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator Mga PF05043.13 gi|332796569|ref|YP_004458069.1| - 0.31 11.7 1.9 0.28 11.8 0.3 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain Lar_restr_allev PF14354.6 gi|332796570|ref|YP_004458070.1| - 0.0048 17.2 0.0 0.0053 17.1 0.0 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|332796570|ref|YP_004458070.1| - 0.01 15.8 0.5 0.13 12.3 0.2 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|332796570|ref|YP_004458070.1| - 0.012 15.2 0.3 0.017 14.6 0.3 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.6 gi|332796570|ref|YP_004458070.1| - 0.088 12.8 0.7 0.11 12.5 0.7 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.6 gi|332796570|ref|YP_004458070.1| - 0.09 12.7 0.2 0.25 11.3 0.2 1.7 1 1 1 2 2 2 0 zinc-ribbon domain RimK PF08443.11 gi|332796571|ref|YP_004458071.1| - 2.2e-33 115.5 0.0 3e-33 115.0 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|332796571|ref|YP_004458071.1| - 1.7e-10 40.6 0.0 2.8e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|332796571|ref|YP_004458071.1| - 5.9e-08 32.3 0.0 5.6e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|332796571|ref|YP_004458071.1| - 4.3e-06 26.9 0.0 6.8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|332796571|ref|YP_004458071.1| - 1.1e-05 25.0 0.0 1.7e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_5 PF13549.6 gi|332796571|ref|YP_004458071.1| - 7.7e-05 22.2 0.0 0.00013 21.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp PF02222.22 gi|332796571|ref|YP_004458071.1| - 0.00038 20.1 0.0 0.00058 19.5 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|332796571|ref|YP_004458071.1| - 0.00056 19.5 0.0 0.0068 16.0 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_2 PF08442.10 gi|332796571|ref|YP_004458071.1| - 0.0024 17.5 0.0 0.0046 16.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Synapsin_C PF02750.14 gi|332796571|ref|YP_004458071.1| - 0.0056 16.2 0.0 0.014 14.9 0.0 1.7 1 1 1 2 2 2 1 Synapsin, ATP binding domain Aminotran_3 PF00202.21 gi|332796572|ref|YP_004458072.1| - 6.1e-109 364.4 0.0 7.9e-109 364.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|332796572|ref|YP_004458072.1| - 0.003 16.8 0.0 0.0037 16.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|332796572|ref|YP_004458072.1| - 0.032 13.2 0.0 0.055 12.4 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-V Peptidase_M20 PF01546.28 gi|332796573|ref|YP_004458073.1| - 2.4e-25 89.5 0.0 2.9e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|332796573|ref|YP_004458073.1| - 1.9e-07 31.0 0.0 3.3e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|332796573|ref|YP_004458073.1| - 0.0059 16.3 0.0 0.0081 15.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 Prenyltransf PF01255.19 gi|332796574|ref|YP_004458074.1| - 6.8e-67 225.3 0.1 7.8e-67 225.1 0.1 1.0 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase DUF3271 PF11675.8 gi|332796574|ref|YP_004458074.1| - 0.052 12.8 0.6 0.085 12.1 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3271) MAAL_N PF05034.13 gi|332796574|ref|YP_004458074.1| - 0.097 12.3 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus Ribosomal_S8e PF01201.22 gi|332796575|ref|YP_004458075.1| - 2.4e-32 111.9 0.4 2.7e-32 111.8 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e SRP19 PF01922.17 gi|332796576|ref|YP_004458076.1| - 0.00027 21.8 0.1 0.00041 21.2 0.1 1.3 1 0 0 1 1 1 1 SRP19 protein XRN1_D2_D3 PF18334.1 gi|332796576|ref|YP_004458076.1| - 0.057 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Exoribonuclease Xrn1 D2/D3 domain Lyase_1 PF00206.20 gi|332796577|ref|YP_004458077.1| - 2.2e-95 319.7 0.0 2.7e-95 319.4 0.0 1.1 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|332796577|ref|YP_004458077.1| - 1.3e-10 41.5 0.2 3.6e-10 40.1 0.0 1.9 2 0 0 2 2 2 1 Fumarase C C-terminus Baculo_PEP_C PF04513.12 gi|332796577|ref|YP_004458077.1| - 0.021 14.9 0.1 0.06 13.4 0.1 1.8 1 0 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Lactamase_B PF00753.27 gi|332796578|ref|YP_004458078.1| - 1.9e-09 37.8 1.0 6.9e-09 36.0 1.0 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332796578|ref|YP_004458078.1| - 0.071 12.6 0.0 0.26 10.8 0.0 1.9 2 0 0 2 2 2 0 Beta-lactamase superfamily domain DUF3834 PF12916.7 gi|332796579|ref|YP_004458079.1| - 6.4e-52 175.7 2.3 7.6e-52 175.5 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) CBS PF00571.28 gi|332796580|ref|YP_004458080.1| - 3e-48 162.1 9.4 2.2e-13 50.4 0.2 4.1 4 0 0 4 4 4 4 CBS domain IF3_N PF05198.16 gi|332796580|ref|YP_004458080.1| - 0.097 13.0 0.1 4.9 7.5 0.0 3.3 3 0 0 3 3 3 0 Translation initiation factor IF-3, N-terminal domain Peptidase_S29 PF02907.15 gi|332796580|ref|YP_004458080.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Hepatitis C virus NS3 protease NUDIX PF00293.28 gi|332796581|ref|YP_004458081.1| - 3.6e-14 52.9 0.0 4.1e-14 52.7 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|332796581|ref|YP_004458081.1| - 0.0071 16.3 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 NUDIX domain Esterase PF00756.20 gi|332796582|ref|YP_004458082.1| - 3.7e-17 62.8 0.0 1.4e-16 60.9 0.0 1.8 1 1 0 1 1 1 1 Putative esterase BAAT_C PF08840.11 gi|332796582|ref|YP_004458082.1| - 8.8e-06 25.8 0.0 1.6e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal DUF915 PF06028.11 gi|332796582|ref|YP_004458082.1| - 0.00046 19.6 0.1 0.03 13.6 0.1 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase of unknown function (DUF915) UPF0227 PF05728.12 gi|332796582|ref|YP_004458082.1| - 0.084 12.8 1.2 0.1 12.5 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) DUF429 PF04250.13 gi|332796583|ref|YP_004458083.1| - 0.0045 16.8 0.4 0.45 10.3 1.0 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF429) TIM PF00121.18 gi|332796584|ref|YP_004458084.1| - 1.9e-10 40.5 0.0 4.4e-10 39.4 0.0 1.6 2 0 0 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|332796584|ref|YP_004458084.1| - 7.3e-06 25.5 0.7 1.2e-05 24.7 0.7 1.3 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DUF561 PF04481.12 gi|332796584|ref|YP_004458084.1| - 0.00051 19.3 0.2 0.0011 18.2 0.2 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF561) NMO PF03060.15 gi|332796584|ref|YP_004458084.1| - 0.00062 19.3 0.4 0.001 18.6 0.4 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|332796584|ref|YP_004458084.1| - 0.0019 17.7 0.8 0.0035 16.8 0.3 1.7 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.18 gi|332796584|ref|YP_004458084.1| - 0.0033 16.5 0.1 0.0056 15.8 0.1 1.3 1 0 0 1 1 1 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|332796584|ref|YP_004458084.1| - 0.0047 16.1 0.0 0.007 15.6 0.0 1.2 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.20 gi|332796584|ref|YP_004458084.1| - 0.0063 15.4 0.8 0.01 14.7 0.8 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Glu_synthase PF01645.17 gi|332796584|ref|YP_004458084.1| - 0.03 13.5 0.1 0.042 13.0 0.1 1.1 1 0 0 1 1 1 0 Conserved region in glutamate synthase G3P_antiterm PF04309.12 gi|332796584|ref|YP_004458084.1| - 0.077 12.4 0.3 0.16 11.4 0.3 1.5 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator tRNA_SAD PF07973.14 gi|332796585|ref|YP_004458085.1| - 2.1e-05 24.5 0.1 6.4e-05 23.0 0.0 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain HTH_1 PF00126.27 gi|332796586|ref|YP_004458086.1| - 3.2e-08 33.4 0.0 6.4e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family T3SS_HrpK1 PF16937.5 gi|332796586|ref|YP_004458086.1| - 0.036 13.7 0.0 0.044 13.4 0.0 1.1 1 0 0 1 1 1 0 Type III secretion system translocator protein, HrpF Phage_TAC_12 PF12363.8 gi|332796586|ref|YP_004458086.1| - 0.037 14.5 0.3 0.076 13.4 0.2 1.6 1 1 0 1 1 1 0 Phage tail assembly chaperone protein, TAC ATP-grasp PF02222.22 gi|332796587|ref|YP_004458087.1| - 5.2e-44 149.8 0.0 7.4e-44 149.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|332796587|ref|YP_004458087.1| - 1.8e-15 56.3 0.1 4.3e-15 55.1 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain ATP-grasp_3 PF02655.14 gi|332796587|ref|YP_004458087.1| - 9e-07 29.1 0.0 1.6e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_2 PF08442.10 gi|332796587|ref|YP_004458087.1| - 0.0086 15.7 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|332796587|ref|YP_004458087.1| - 0.023 14.1 0.0 0.056 12.8 0.0 1.6 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GARS_A PF01071.19 gi|332796587|ref|YP_004458087.1| - 0.072 12.8 0.0 0.21 11.3 0.0 1.8 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain YopX PF09643.10 gi|332796587|ref|YP_004458087.1| - 0.12 12.4 2.1 0.6 10.2 2.1 2.0 1 1 0 1 1 1 0 YopX protein AIRC PF00731.20 gi|332796588|ref|YP_004458088.1| - 1.5e-69 232.3 0.2 1.7e-69 232.1 0.2 1.0 1 0 0 1 1 1 1 AIR carboxylase PrpR_N PF06506.11 gi|332796588|ref|YP_004458088.1| - 0.1 12.2 0.1 0.23 11.0 0.1 1.8 1 1 0 1 1 1 0 Propionate catabolism activator FAD_binding_4 PF01565.23 gi|332796589|ref|YP_004458089.1| - 4.6e-11 42.6 0.0 1.3e-10 41.2 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain IU_nuc_hydro PF01156.19 gi|332796590|ref|YP_004458090.1| - 1.5e-74 251.3 0.0 1.7e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase TrmB PF01978.19 gi|332796591|ref|YP_004458091.1| - 1.8e-07 30.9 0.0 2.3e-07 30.6 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|332796591|ref|YP_004458091.1| - 1e-06 29.1 0.0 1.3e-06 28.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain S10_plectin PF03501.15 gi|332796591|ref|YP_004458091.1| - 3.2e-06 27.1 0.0 3.9e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Plectin/S10 domain HTH_34 PF13601.6 gi|332796591|ref|YP_004458091.1| - 5.8e-06 26.4 0.2 7e-06 26.1 0.2 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|332796591|ref|YP_004458091.1| - 1.1e-05 25.2 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|332796591|ref|YP_004458091.1| - 2.8e-05 23.8 0.0 3.8e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|332796591|ref|YP_004458091.1| - 3.1e-05 23.4 0.1 3.1e-05 23.4 0.1 1.8 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|332796591|ref|YP_004458091.1| - 5.9e-05 22.9 0.0 9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|332796591|ref|YP_004458091.1| - 0.00023 21.4 0.0 0.00032 21.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator B-block_TFIIIC PF04182.12 gi|332796591|ref|YP_004458091.1| - 0.00034 20.7 0.0 0.00039 20.5 0.0 1.2 1 1 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|332796591|ref|YP_004458091.1| - 0.0013 18.6 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|332796591|ref|YP_004458091.1| - 0.0018 18.2 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_47 PF16221.5 gi|332796591|ref|YP_004458091.1| - 0.0026 17.3 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 winged helix-turn-helix IF2_N PF04760.15 gi|332796591|ref|YP_004458091.1| - 0.0027 17.5 0.7 0.024 14.5 0.7 2.1 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region HTH_CodY PF08222.11 gi|332796591|ref|YP_004458091.1| - 0.003 17.1 0.1 0.0037 16.8 0.1 1.2 1 0 0 1 1 1 1 CodY helix-turn-helix domain MarR PF01047.22 gi|332796591|ref|YP_004458091.1| - 0.0036 17.2 0.0 0.0053 16.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|332796591|ref|YP_004458091.1| - 0.0043 17.0 0.1 0.0062 16.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain HxlR PF01638.17 gi|332796591|ref|YP_004458091.1| - 0.015 15.1 0.1 0.018 14.9 0.1 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix RepL PF05732.11 gi|332796591|ref|YP_004458091.1| - 0.018 14.5 0.0 0.019 14.4 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_6 PF01418.17 gi|332796591|ref|YP_004458091.1| - 0.045 13.7 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Sulfolobus_pRN PF05584.11 gi|332796591|ref|YP_004458091.1| - 0.045 13.8 0.0 0.069 13.2 0.0 1.4 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Sigma70_r4_2 PF08281.12 gi|332796591|ref|YP_004458091.1| - 0.061 13.0 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_54 PF18607.1 gi|332796591|ref|YP_004458091.1| - 0.078 13.1 0.1 0.096 12.8 0.1 1.2 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_9 PF08221.11 gi|332796591|ref|YP_004458091.1| - 0.098 12.8 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain GntR PF00392.21 gi|332796591|ref|YP_004458091.1| - 0.12 12.1 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|332796591|ref|YP_004458091.1| - 0.12 12.4 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|332796591|ref|YP_004458091.1| - 0.22 12.2 0.0 0.3 11.8 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal MFS_1 PF07690.16 gi|332796592|ref|YP_004458092.1| - 0.0014 17.7 52.2 0.11 11.4 52.2 3.4 1 1 0 1 1 1 1 Major Facilitator Superfamily Phage_holin_Dp1 PF16938.5 gi|332796592|ref|YP_004458092.1| - 0.51 10.6 4.9 0.2 11.9 1.0 2.4 2 0 0 2 2 2 0 Putative phage holin Dp-1 Arm_3 PF16186.5 gi|332796593|ref|YP_004458093.1| - 0.017 14.7 0.5 0.032 13.8 0.5 1.5 1 0 0 1 1 1 0 Atypical Arm repeat Pkinase PF00069.25 gi|332796594|ref|YP_004458094.1| - 8.1e-29 100.8 0.0 1.4e-28 100.0 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|332796594|ref|YP_004458094.1| - 1.5e-11 44.1 0.0 4e-11 42.7 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase TPR_19 PF14559.6 gi|332796594|ref|YP_004458094.1| - 1.8e-07 31.6 0.6 0.0016 18.9 0.0 3.4 3 1 1 4 4 4 2 Tetratricopeptide repeat TPR_16 PF13432.6 gi|332796594|ref|YP_004458094.1| - 4.6e-06 27.2 0.0 8.1e-05 23.2 0.1 2.7 3 0 0 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|332796594|ref|YP_004458094.1| - 6.4e-06 26.3 3.3 2e-05 24.7 0.2 2.6 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_12 PF13424.6 gi|332796594|ref|YP_004458094.1| - 7e-05 23.0 0.3 0.016 15.5 0.1 3.6 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|332796594|ref|YP_004458094.1| - 0.00038 20.9 1.1 20 6.1 0.0 5.4 6 0 0 6 6 4 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|332796594|ref|YP_004458094.1| - 0.00082 19.3 12.6 0.75 10.1 0.1 5.2 6 0 0 6 6 5 2 Tetratricopeptide repeat PPR PF01535.20 gi|332796594|ref|YP_004458094.1| - 0.0012 19.0 7.4 0.68 10.3 0.5 4.5 4 0 0 4 4 4 2 PPR repeat TPR_7 PF13176.6 gi|332796594|ref|YP_004458094.1| - 0.0022 17.9 0.1 5.9 7.2 0.0 3.7 3 0 0 3 3 3 1 Tetratricopeptide repeat APH PF01636.23 gi|332796594|ref|YP_004458094.1| - 0.0046 16.9 0.0 1.6 8.6 0.0 2.3 1 1 1 2 2 2 1 Phosphotransferase enzyme family SPO22 PF08631.10 gi|332796594|ref|YP_004458094.1| - 0.0092 15.5 0.5 0.17 11.4 0.4 2.4 2 1 0 2 2 2 1 Meiosis protein SPO22/ZIP4 like TPR_14 PF13428.6 gi|332796594|ref|YP_004458094.1| - 0.018 15.8 0.0 15 6.7 0.0 3.9 2 2 1 3 3 3 0 Tetratricopeptide repeat BTAD PF03704.17 gi|332796594|ref|YP_004458094.1| - 0.021 15.3 0.1 5.1 7.5 0.0 3.4 3 2 2 5 5 5 0 Bacterial transcriptional activator domain TPR_8 PF13181.6 gi|332796594|ref|YP_004458094.1| - 0.023 14.9 14.3 0.23 11.8 1.0 4.8 4 1 1 5 5 5 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|332796594|ref|YP_004458094.1| - 0.024 14.4 14.8 0.16 11.9 0.1 5.0 6 0 0 6 6 5 0 Tetratricopeptide repeat TPR_10 PF13374.6 gi|332796594|ref|YP_004458094.1| - 0.025 14.5 0.9 2.1 8.3 0.1 3.2 2 1 1 3 3 2 0 Tetratricopeptide repeat FTA2 PF13095.6 gi|332796594|ref|YP_004458094.1| - 0.06 13.0 1.3 0.82 9.3 0.1 2.7 3 1 0 3 3 3 0 Kinetochore Sim4 complex subunit FTA2 CopK PF11525.8 gi|332796594|ref|YP_004458094.1| - 0.065 12.9 0.1 0.18 11.5 0.1 1.7 1 0 0 1 1 1 0 Copper resistance protein K DUF1955 PF09205.10 gi|332796594|ref|YP_004458094.1| - 0.15 11.8 5.7 0.22 11.3 1.6 3.1 2 2 2 4 4 4 0 Domain of unknown function (DUF1955) Amidohydro_2 PF04909.14 gi|332796595|ref|YP_004458095.1| - 3.7e-07 30.2 0.0 9e-07 29.0 0.0 1.5 1 1 0 1 1 1 1 Amidohydrolase Ribonuc_L-PSP PF01042.21 gi|332796596|ref|YP_004458096.1| - 4.2e-41 139.8 0.0 4.6e-41 139.6 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP CBS PF00571.28 gi|332796598|ref|YP_004458098.1| - 6.8e-45 151.3 6.3 5e-11 42.9 0.1 4.1 4 0 0 4 4 4 4 CBS domain DUF1902 PF08972.11 gi|332796598|ref|YP_004458098.1| - 0.028 14.4 0.0 0.12 12.4 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1902) DSBA PF01323.20 gi|332796599|ref|YP_004458099.1| - 7.4e-24 84.6 1.4 1.8e-14 54.0 0.1 2.1 2 0 0 2 2 2 2 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.6 gi|332796599|ref|YP_004458099.1| - 2.7e-22 79.4 0.2 5e-22 78.5 0.2 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_4 PF13462.6 gi|332796599|ref|YP_004458099.1| - 1.8e-10 41.2 0.9 1.4e-07 31.8 0.0 2.1 1 1 0 2 2 2 2 Thioredoxin Thioredoxin_3 PF13192.6 gi|332796599|ref|YP_004458099.1| - 8.2e-05 22.6 0.1 0.0013 18.7 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin domain Thioredoxin_2 PF13098.6 gi|332796599|ref|YP_004458099.1| - 0.04 14.4 0.1 6.2 7.3 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin-like domain CBS PF00571.28 gi|332796600|ref|YP_004458100.1| - 6.9e-22 77.7 1.2 1.4e-11 44.6 0.0 2.1 2 0 0 2 2 2 2 CBS domain LBP_BPI_CETP_C PF02886.17 gi|332796601|ref|YP_004458101.1| - 0.07 12.6 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 LBP / BPI / CETP family, C-terminal domain AMP-binding PF00501.28 gi|332796602|ref|YP_004458102.1| - 1.4e-91 307.2 0.0 1.9e-91 306.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|332796602|ref|YP_004458102.1| - 2.8e-19 69.8 0.3 8.1e-19 68.4 0.1 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|332796602|ref|YP_004458102.1| - 6e-16 58.1 0.4 1.9e-15 56.5 0.5 1.8 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus DUF2122 PF09895.9 gi|332796602|ref|YP_004458102.1| - 0.0057 17.0 0.1 0.27 11.6 0.1 2.5 2 0 0 2 2 2 1 RecB-family nuclease (DUF2122) T2SS-T3SS_pil_N PF13629.6 gi|332796602|ref|YP_004458102.1| - 0.18 11.6 0.1 0.46 10.3 0.1 1.7 1 0 0 1 1 1 0 Pilus formation protein N terminal region CoA_trans PF01144.23 gi|332796603|ref|YP_004458103.1| - 3.2e-21 75.8 0.0 3.7e-21 75.5 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase Mal_decarbox_Al PF16957.5 gi|332796603|ref|YP_004458103.1| - 0.092 11.1 0.1 0.12 10.7 0.1 1.1 1 0 0 1 1 1 0 Malonate decarboxylase, alpha subunit, transporter CoA_trans PF01144.23 gi|332796604|ref|YP_004458104.1| - 3.6e-28 98.4 0.0 4.3e-28 98.2 0.0 1.1 1 0 0 1 1 1 1 Coenzyme A transferase Phage_Capsid_P3 PF09018.11 gi|332796604|ref|YP_004458104.1| - 0.034 12.9 0.0 0.04 12.7 0.0 1.2 1 0 0 1 1 1 0 P3 major capsid protein FliD_C PF07195.12 gi|332796605|ref|YP_004458105.1| - 0.12 11.7 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus B2 PF11473.8 gi|332796606|ref|YP_004458106.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 RNA binding protein B2 ArnB_C PF18677.1 gi|332796607|ref|YP_004458107.1| - 1.1e-22 79.9 3.7 1.9e-22 79.1 3.7 1.4 1 0 0 1 1 1 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|332796607|ref|YP_004458107.1| - 6e-12 46.2 0.7 4.4e-11 43.3 0.1 2.3 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|332796607|ref|YP_004458107.1| - 3.9e-07 30.7 0.3 2.5e-06 28.1 0.0 2.5 2 1 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|332796607|ref|YP_004458107.1| - 8.8e-06 25.7 0.0 0.00022 21.2 0.0 2.4 3 0 0 3 3 3 1 von Willebrand factor type A domain Lambda_CIII PF02061.16 gi|332796607|ref|YP_004458107.1| - 0.074 13.1 0.0 17 5.5 0.0 3.2 3 0 0 3 3 3 0 Lambda Phage CIII FHA PF00498.26 gi|332796608|ref|YP_004458108.1| - 1.8e-18 66.6 0.0 3.3e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 FHA domain Yop-YscD_cpl PF16697.5 gi|332796608|ref|YP_004458108.1| - 4e-10 39.9 0.1 1.9e-09 37.7 0.0 2.0 2 1 0 2 2 2 1 Inner membrane component of T3SS, cytoplasmic domain zinc_ribbon_2 PF13240.6 gi|332796608|ref|YP_004458108.1| - 1.5e-07 30.9 2.6 2.3e-07 30.3 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-RanBP PF00641.18 gi|332796608|ref|YP_004458108.1| - 1.7e-06 27.3 0.9 2.4e-06 26.7 0.9 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others DZR PF12773.7 gi|332796608|ref|YP_004458108.1| - 0.00065 19.7 1.4 0.0011 18.9 1.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|332796608|ref|YP_004458108.1| - 0.001 18.4 1.4 0.0018 17.6 1.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Nucleic_acid_bd PF13820.6 gi|332796608|ref|YP_004458108.1| - 0.0034 17.2 1.4 0.0049 16.7 1.4 1.3 1 0 0 1 1 1 1 Putative nucleic acid-binding region Vps36-NZF-N PF16988.5 gi|332796608|ref|YP_004458108.1| - 0.0081 15.5 3.9 0.059 12.8 3.9 2.4 1 1 0 1 1 1 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain Prok-RING_1 PF14446.6 gi|332796608|ref|YP_004458108.1| - 0.12 12.3 0.7 0.2 11.6 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-tcix PF14952.6 gi|332796608|ref|YP_004458108.1| - 0.17 11.5 0.9 0.32 10.7 0.9 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Presenilin PF01080.17 gi|332796608|ref|YP_004458108.1| - 0.23 10.2 2.3 0.27 9.9 2.3 1.1 1 0 0 1 1 1 0 Presenilin DUF4402 PF14352.6 gi|332796608|ref|YP_004458108.1| - 0.42 11.3 8.0 0.14 12.9 5.3 1.5 2 0 0 2 2 1 0 Domain of unknown function (DUF4402) HscB_4_cys PF18256.1 gi|332796608|ref|YP_004458108.1| - 0.49 10.3 2.2 0.92 9.4 2.2 1.4 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif Ndc1_Nup PF09531.10 gi|332796608|ref|YP_004458108.1| - 2.8 6.5 10.7 3.2 6.3 10.7 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF2072 PF09845.9 gi|332796608|ref|YP_004458108.1| - 3.1 8.1 7.3 8.5 6.6 7.3 1.9 1 1 0 1 1 1 0 Zn-ribbon containing protein PAT1 PF09770.9 gi|332796608|ref|YP_004458108.1| - 5.6 5.1 14.0 6.8 4.8 14.0 1.0 1 0 0 1 1 1 0 Topoisomerase II-associated protein PAT1 GREB1 PF15782.5 gi|332796608|ref|YP_004458108.1| - 6.7 3.7 9.6 7.9 3.5 9.6 1.0 1 0 0 1 1 1 0 Gene regulated by oestrogen in breast cancer TFIIA PF03153.13 gi|332796608|ref|YP_004458108.1| - 8.5 6.2 19.6 11 5.9 19.6 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Metallophos PF00149.28 gi|332796609|ref|YP_004458109.1| - 3.7e-31 109.2 0.5 4.9e-31 108.8 0.5 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|332796609|ref|YP_004458109.1| - 1.8e-06 28.3 0.0 2.5e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain STPPase_N PF16891.5 gi|332796609|ref|YP_004458109.1| - 0.005 17.3 0.5 0.011 16.2 0.5 1.6 1 0 0 1 1 1 1 Serine-threonine protein phosphatase N-terminal domain ArnB_C PF18677.1 gi|332796610|ref|YP_004458110.1| - 7.9e-32 109.2 9.1 1.7e-31 108.2 9.1 1.6 1 0 0 1 1 1 1 Archaellum regulatory network B, C-terminal domain VWA PF00092.28 gi|332796610|ref|YP_004458110.1| - 7e-18 65.5 1.5 1.1e-17 64.8 0.1 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|332796610|ref|YP_004458110.1| - 9.4e-14 52.0 0.1 2.7e-13 50.5 0.0 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|332796610|ref|YP_004458110.1| - 5.1e-09 36.2 0.0 1.4e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|332796610|ref|YP_004458110.1| - 0.0011 18.4 0.0 0.0025 17.2 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|332796610|ref|YP_004458110.1| - 0.0014 18.7 0.0 0.0034 17.5 0.0 1.7 1 0 0 1 1 1 1 VWA-like domain (DUF2201) SL4P PF17618.2 gi|332796611|ref|YP_004458111.1| - 0.027 14.5 0.1 0.084 12.9 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized Strongylid L4 protein Lipocalin_8 PF16585.5 gi|332796611|ref|YP_004458111.1| - 0.096 13.1 0.0 0.15 12.5 0.0 1.4 1 0 0 1 1 1 0 Lipocalin-like domain MazE_antitoxin PF04014.18 gi|332796612|ref|YP_004458112.1| - 2.8e-10 39.9 0.1 3.2e-10 39.7 0.1 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin eIF-1a PF01176.19 gi|332796612|ref|YP_004458112.1| - 0.00065 19.5 0.2 0.0009 19.0 0.2 1.4 1 1 0 1 1 1 1 Translation initiation factor 1A / IF-1 PrlF_antitoxin PF15937.5 gi|332796612|ref|YP_004458112.1| - 0.0011 19.3 0.1 0.0011 19.3 0.1 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 gi|332796612|ref|YP_004458112.1| - 0.018 15.2 0.1 0.021 15.0 0.1 1.2 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain UPF0270 PF06794.12 gi|332796612|ref|YP_004458112.1| - 0.083 13.0 0.0 0.085 12.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0270) DUF402 PF04167.13 gi|332796613|ref|YP_004458113.1| - 3.1e-12 46.5 1.7 6.2e-12 45.5 1.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) RNase_E_G PF10150.9 gi|332796613|ref|YP_004458113.1| - 0.13 11.7 1.6 0.51 9.7 0.0 2.4 3 1 0 3 3 3 0 Ribonuclease E/G family Aconitase PF00330.20 gi|332796614|ref|YP_004458114.1| - 7.1e-162 539.6 0.0 9.5e-162 539.2 0.0 1.1 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|332796614|ref|YP_004458114.1| - 6.9e-36 123.5 0.0 1.7e-35 122.2 0.0 1.6 1 0 0 1 1 1 1 Aconitase C-terminal domain HAD PF12710.7 gi|332796614|ref|YP_004458114.1| - 0.21 12.0 0.0 0.39 11.1 0.0 1.4 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF2258 PF10015.9 gi|332796616|ref|YP_004458116.1| - 5.9e-26 90.4 3.1 5.9e-26 90.4 3.1 1.9 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2258) HALZ PF02183.18 gi|332796616|ref|YP_004458116.1| - 0.0013 18.9 1.5 0.0024 18.0 1.5 1.5 1 0 0 1 1 1 1 Homeobox associated leucine zipper Prp19 PF08606.11 gi|332796616|ref|YP_004458116.1| - 0.0045 17.0 0.1 0.0095 15.9 0.1 1.5 1 0 0 1 1 1 1 Prp19/Pso4-like DivIVA PF05103.13 gi|332796616|ref|YP_004458116.1| - 0.026 14.6 3.1 0.13 12.3 1.3 2.3 2 0 0 2 2 2 0 DivIVA protein Geminin PF07412.12 gi|332796616|ref|YP_004458116.1| - 0.1 12.3 4.1 0.15 11.7 4.1 1.4 1 1 0 1 1 1 0 Geminin DUF883 PF05957.13 gi|332796617|ref|YP_004458117.1| - 0.0024 18.4 0.3 1.2 9.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF883) DUF1275 PF06912.11 gi|332796617|ref|YP_004458117.1| - 0.043 13.7 3.0 0.052 13.5 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) DUF2798 PF11391.8 gi|332796617|ref|YP_004458117.1| - 0.14 12.2 0.2 0.14 12.2 0.2 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2798) FUN14 PF04930.15 gi|332796617|ref|YP_004458117.1| - 0.4 11.1 11.8 6.4 7.3 11.7 2.1 1 1 0 1 1 1 0 FUN14 family MtrC PF04211.13 gi|332796617|ref|YP_004458117.1| - 0.48 9.4 15.8 0.22 10.5 10.0 2.0 1 1 1 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit C DUF4330 PF14221.6 gi|332796617|ref|YP_004458117.1| - 0.49 10.6 4.4 0.24 11.6 2.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) DUF4203 PF13886.6 gi|332796617|ref|YP_004458117.1| - 0.5 10.0 12.1 1.3 8.7 12.1 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4203) DUF3487 PF11990.8 gi|332796617|ref|YP_004458117.1| - 0.87 9.5 10.1 0.33 10.8 6.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3487) SPC12 PF06645.13 gi|332796617|ref|YP_004458117.1| - 7.9 6.6 10.8 15 5.8 7.6 2.1 2 0 0 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) Wzy_C PF04932.15 gi|332796617|ref|YP_004458117.1| - 9.5 5.8 11.4 2.2 7.9 8.4 1.5 1 1 0 1 1 1 0 O-Antigen ligase PrgI PF12666.7 gi|332796617|ref|YP_004458117.1| - 9.8 7.0 8.5 5.5 7.8 6.7 1.4 1 1 0 1 1 1 0 PrgI family protein TrmB PF01978.19 gi|332796618|ref|YP_004458118.1| - 3e-10 39.8 0.9 4.5e-10 39.3 0.5 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TFIIE_alpha PF02002.17 gi|332796618|ref|YP_004458118.1| - 4.5e-09 36.1 3.7 5.6e-09 35.8 3.7 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|332796618|ref|YP_004458118.1| - 1.3e-08 35.2 0.1 2.1e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|332796618|ref|YP_004458118.1| - 4.4e-08 32.9 0.2 6.6e-08 32.4 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|332796618|ref|YP_004458118.1| - 5.7e-07 29.3 0.0 8.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|332796618|ref|YP_004458118.1| - 7.6e-07 29.0 0.3 1.5e-06 28.0 0.3 1.5 1 0 0 1 1 1 1 HTH domain RuvB_C PF05491.13 gi|332796618|ref|YP_004458118.1| - 6.2e-06 26.0 0.3 1e-05 25.3 0.3 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 gi|332796618|ref|YP_004458118.1| - 1.8e-05 24.8 0.6 4.8e-05 23.5 0.3 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|332796618|ref|YP_004458118.1| - 5.4e-05 22.7 0.2 8.6e-05 22.0 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|332796618|ref|YP_004458118.1| - 0.00011 22.1 0.5 0.001 19.0 0.5 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|332796618|ref|YP_004458118.1| - 0.00013 21.6 0.1 0.00026 20.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|332796618|ref|YP_004458118.1| - 0.0006 19.9 0.1 0.0014 18.8 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|332796618|ref|YP_004458118.1| - 0.00088 18.9 0.0 0.0087 15.7 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family EAP30 PF04157.16 gi|332796618|ref|YP_004458118.1| - 0.0013 18.1 0.0 0.026 13.8 0.0 2.1 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_Crp_2 PF13545.6 gi|332796618|ref|YP_004458118.1| - 0.0023 17.9 0.0 0.0037 17.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Phage_rep_O PF04492.13 gi|332796618|ref|YP_004458118.1| - 0.0054 17.3 0.3 0.01 16.4 0.3 1.6 1 1 0 1 1 1 1 Bacteriophage replication protein O SMC_ScpB PF04079.16 gi|332796618|ref|YP_004458118.1| - 0.0059 16.2 0.0 0.0075 15.9 0.0 1.2 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB Cullin_Nedd8 PF10557.9 gi|332796618|ref|YP_004458118.1| - 0.029 14.4 0.6 0.13 12.4 0.1 2.1 2 0 0 2 2 2 0 Cullin protein neddylation domain HTH_5 PF01022.20 gi|332796618|ref|YP_004458118.1| - 0.03 14.2 0.3 0.17 11.8 0.1 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|332796618|ref|YP_004458118.1| - 0.054 13.8 0.6 0.1 13.0 0.6 1.6 1 1 0 1 1 1 0 Penicillinase repressor DUF4423 PF14394.6 gi|332796618|ref|YP_004458118.1| - 0.054 13.2 0.9 0.1 12.3 0.2 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Rio2_N PF09202.11 gi|332796618|ref|YP_004458118.1| - 0.064 13.5 0.1 0.1 12.8 0.1 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_Mga PF08280.11 gi|332796618|ref|YP_004458118.1| - 0.066 13.3 1.1 0.086 12.9 0.3 1.6 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain FeoC PF09012.10 gi|332796618|ref|YP_004458118.1| - 0.087 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator Rrf2 PF02082.20 gi|332796618|ref|YP_004458118.1| - 0.11 12.9 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator Phage_CI_repr PF07022.13 gi|332796618|ref|YP_004458118.1| - 0.14 12.3 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_19 PF12844.7 gi|332796618|ref|YP_004458118.1| - 0.15 12.1 0.9 0.42 10.7 0.9 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain NAD_binding_1 PF00175.21 gi|332796620|ref|YP_004458120.1| - 0.012 16.2 0.0 0.6 10.8 0.0 2.3 1 1 1 2 2 2 0 Oxidoreductase NAD-binding domain DUF918 PF06033.11 gi|332796622|ref|YP_004458122.1| - 0.029 14.4 0.1 0.052 13.6 0.1 1.5 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF918) MS_channel PF00924.18 gi|332796623|ref|YP_004458123.1| - 4.6e-27 94.9 1.3 4.6e-27 94.9 1.3 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Acyl-ACP_TE PF01643.17 gi|332796623|ref|YP_004458123.1| - 0.045 13.0 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Acyl-ACP thioesterase Glyco_hydro_15 PF00723.21 gi|332796624|ref|YP_004458124.1| - 8.9e-22 77.5 0.0 1e-14 54.2 0.1 3.1 2 1 1 3 3 3 3 Glycosyl hydrolases family 15 MBOAT_2 PF13813.6 gi|332796624|ref|YP_004458124.1| - 0.012 15.8 0.2 0.035 14.4 0.2 1.7 1 0 0 1 1 1 0 Membrane bound O-acyl transferase family HBB PF06777.11 gi|332796624|ref|YP_004458124.1| - 0.16 11.6 0.0 0.31 10.7 0.0 1.4 1 0 0 1 1 1 0 Helical and beta-bridge domain Glycos_transf_2 PF00535.26 gi|332796625|ref|YP_004458125.1| - 4e-10 39.8 0.0 1.6e-08 34.5 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferase family 2 WSS_VP PF12175.8 gi|332796626|ref|YP_004458126.1| - 0.11 12.0 0.0 0.12 11.8 0.0 1.1 1 0 0 1 1 1 0 White spot syndrome virus structural envelope protein VP SusE PF14292.6 gi|332796626|ref|YP_004458126.1| - 0.11 12.7 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 SusE outer membrane protein XdhC_C PF13478.6 gi|332796628|ref|YP_004458128.1| - 3.5e-20 72.8 0.0 4.8e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 XdhC Rossmann domain PmbA_TldD PF01523.16 gi|332796629|ref|YP_004458129.1| - 2.9e-17 63.4 0.0 5.3e-17 62.6 0.0 1.3 1 1 0 1 1 1 1 Putative modulator of DNA gyrase DUF1057 PF06342.12 gi|332796629|ref|YP_004458129.1| - 0.011 14.8 0.5 0.086 11.9 0.0 2.3 3 0 0 3 3 3 0 Alpha/beta hydrolase of unknown function (DUF1057) LOH1CR12 PF10158.9 gi|332796629|ref|YP_004458129.1| - 0.053 13.6 0.2 0.19 11.8 0.1 1.8 1 1 1 2 2 2 0 Tumour suppressor protein TMEM238 PF15125.6 gi|332796630|ref|YP_004458130.1| - 0.037 14.2 0.7 0.037 14.2 0.7 2.7 2 1 0 3 3 3 0 TMEM238 protein family DUF2154 PF09922.9 gi|332796630|ref|YP_004458130.1| - 0.057 13.3 0.0 0.085 12.7 0.0 1.2 1 0 0 1 1 1 0 Cell wall-active antibiotics response 4TMS YvqF DUF2721 PF11026.8 gi|332796631|ref|YP_004458131.1| - 0.0083 16.0 0.0 0.0092 15.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2721) LptF_LptG PF03739.14 gi|332796631|ref|YP_004458131.1| - 0.013 14.4 0.4 0.014 14.2 0.4 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG DUF2207 PF09972.9 gi|332796631|ref|YP_004458131.1| - 0.014 14.2 3.1 0.02 13.7 3.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) TrbC PF04956.13 gi|332796631|ref|YP_004458131.1| - 0.014 15.6 3.6 0.036 14.3 3.7 1.6 1 1 1 2 2 2 0 TrbC/VIRB2 family DUF4519 PF15012.6 gi|332796631|ref|YP_004458131.1| - 0.052 13.7 0.6 3.6 7.8 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4519) Phage_holin_3_6 PF07332.11 gi|332796631|ref|YP_004458131.1| - 0.06 13.4 0.2 0.067 13.2 0.2 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III EbsA PF17255.2 gi|332796631|ref|YP_004458131.1| - 0.27 11.6 1.8 0.33 11.3 1.8 1.1 1 0 0 1 1 1 0 EbsA-like protein LSR PF05624.14 gi|332796631|ref|YP_004458131.1| - 1.7 8.7 3.8 2.3 8.3 0.5 2.0 2 0 0 2 2 2 0 Lipolysis stimulated receptor (LSR) PriX PF18689.1 gi|332796632|ref|YP_004458132.1| - 2.5e-43 146.5 0.4 3.1e-43 146.1 0.4 1.1 1 0 0 1 1 1 1 Primase X MORN_2 PF07661.13 gi|332796632|ref|YP_004458132.1| - 0.003 17.6 0.9 0.058 13.6 0.0 2.7 2 0 0 2 2 2 1 MORN repeat variant HTH_Tnp_Mu_2 PF09039.11 gi|332796632|ref|YP_004458132.1| - 0.15 12.1 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 Mu DNA binding, I gamma subdomain ATP_bind_3 PF01171.20 gi|332796633|ref|YP_004458133.1| - 6.1e-16 58.7 0.0 1.6e-15 57.3 0.0 1.7 1 1 0 1 1 1 1 PP-loop family tRNA_Me_trans PF03054.16 gi|332796633|ref|YP_004458133.1| - 0.0026 16.6 0.1 0.0058 15.5 0.1 1.5 1 1 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|332796633|ref|YP_004458133.1| - 0.0081 15.3 0.0 0.011 14.8 0.0 1.2 1 0 0 1 1 1 1 NAD synthase ThiI PF02568.14 gi|332796633|ref|YP_004458133.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|332796633|ref|YP_004458133.1| - 0.017 15.1 0.0 0.046 13.8 0.0 1.8 1 1 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|332796633|ref|YP_004458133.1| - 0.021 14.3 0.2 0.047 13.2 0.2 1.7 1 1 0 1 1 1 0 Queuosine biosynthesis protein QueC Transp_Tc5_C PF04236.15 gi|332796633|ref|YP_004458133.1| - 0.046 14.1 0.6 0.046 14.1 0.6 2.3 3 0 0 3 3 2 0 Tc5 transposase C-terminal domain HTH_39 PF14090.6 gi|332796633|ref|YP_004458133.1| - 0.06 13.1 0.1 0.52 10.1 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RecR PF02132.15 gi|332796633|ref|YP_004458133.1| - 0.067 12.8 0.9 0.067 12.8 0.9 2.9 3 0 0 3 3 3 0 RecR protein zf-C2H2_3 PF13878.6 gi|332796633|ref|YP_004458133.1| - 0.24 11.3 3.5 12 5.8 0.1 3.3 3 0 0 3 3 3 0 zinc-finger of acetyl-transferase ESCO C1_2 PF03107.16 gi|332796633|ref|YP_004458133.1| - 0.79 10.1 4.8 4.5 7.7 0.2 3.2 3 0 0 3 3 3 0 C1 domain Zn_Tnp_IS1595 PF12760.7 gi|332796633|ref|YP_004458133.1| - 1 9.4 3.6 65 3.6 0.1 3.4 3 0 0 3 3 3 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|332796633|ref|YP_004458133.1| - 1 9.4 6.9 2.2 8.4 0.9 3.1 3 0 0 3 3 3 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|332796633|ref|YP_004458133.1| - 1.2 10.0 5.8 2.3 9.1 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon family DEAD PF00270.29 gi|332796635|ref|YP_004458135.1| - 1.3e-42 145.5 0.0 5.6e-42 143.5 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332796635|ref|YP_004458135.1| - 1.3e-32 112.5 0.6 5.6e-31 107.2 0.1 2.5 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332796635|ref|YP_004458135.1| - 2.5e-09 37.4 0.0 2.6e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SecA_DEAD PF07517.14 gi|332796635|ref|YP_004458135.1| - 0.00043 19.7 1.8 0.0021 17.4 1.6 2.0 1 1 0 1 1 1 1 SecA DEAD-like domain Flavi_DEAD PF07652.14 gi|332796635|ref|YP_004458135.1| - 0.016 15.2 0.0 0.42 10.6 0.1 2.4 2 0 0 2 2 2 0 Flavivirus DEAD domain T4SS-DNA_transf PF02534.14 gi|332796635|ref|YP_004458135.1| - 0.023 13.5 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 Type IV secretory system Conjugative DNA transfer TrmB PF01978.19 gi|332796636|ref|YP_004458136.1| - 0.0013 18.5 0.1 0.0026 17.6 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|332796636|ref|YP_004458136.1| - 0.0019 18.3 0.3 0.003 17.7 0.3 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PheRS_DBD1 PF18552.1 gi|332796636|ref|YP_004458136.1| - 0.0021 17.8 0.3 0.039 13.7 0.1 2.2 2 0 0 2 2 2 1 PheRS DNA binding domain 1 Replic_Relax PF13814.6 gi|332796636|ref|YP_004458136.1| - 0.0028 17.7 0.0 0.0033 17.5 0.0 1.1 1 0 0 1 1 1 1 Replication-relaxation Phage_rep_org_N PF09681.10 gi|332796636|ref|YP_004458136.1| - 0.011 15.6 0.2 0.019 14.9 0.2 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) MarR PF01047.22 gi|332796636|ref|YP_004458136.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF1495 PF07381.11 gi|332796636|ref|YP_004458136.1| - 0.014 15.2 0.0 0.12 12.2 0.0 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) PadR PF03551.14 gi|332796636|ref|YP_004458136.1| - 0.027 14.4 0.1 0.082 12.9 0.1 1.9 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|332796636|ref|YP_004458136.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.10 gi|332796636|ref|YP_004458136.1| - 0.081 12.9 1.9 0.24 11.4 1.9 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|332796636|ref|YP_004458136.1| - 0.084 13.4 0.1 0.14 12.6 0.1 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rotamase_3 PF13616.6 gi|332796636|ref|YP_004458136.1| - 0.095 13.2 0.1 0.15 12.6 0.1 1.3 1 0 0 1 1 1 0 PPIC-type PPIASE domain HTH_20 PF12840.7 gi|332796636|ref|YP_004458136.1| - 0.11 12.5 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_42 PF06224.12 gi|332796636|ref|YP_004458136.1| - 0.12 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain RII_binding_1 PF10522.9 gi|332796636|ref|YP_004458136.1| - 0.14 12.4 0.1 0.37 11.1 0.1 1.8 1 0 0 1 1 1 0 RII binding domain DUF371 PF04027.13 gi|332796636|ref|YP_004458136.1| - 0.14 12.1 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF371) HTH_24 PF13412.6 gi|332796636|ref|YP_004458136.1| - 0.25 10.9 1.3 0.28 10.8 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding SSF PF00474.17 gi|332796637|ref|YP_004458137.1| - 1.1e-16 60.7 27.1 1.7e-16 60.1 27.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.8 gi|332796638|ref|YP_004458138.1| - 0.00052 19.9 1.0 0.00064 19.6 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) 2TM PF13239.6 gi|332796638|ref|YP_004458138.1| - 0.15 12.4 3.8 0.2 12.0 3.8 1.1 1 0 0 1 1 1 0 2TM domain Sin3a_C PF16879.5 gi|332796639|ref|YP_004458139.1| - 0.048 13.4 1.4 5.5 6.6 0.1 2.1 2 0 0 2 2 2 0 C-terminal domain of Sin3a protein SUV3_C PF12513.8 gi|332796640|ref|YP_004458140.1| - 0.098 12.6 0.0 0.34 10.9 0.0 1.9 1 0 0 1 1 1 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF1404 PF07185.11 gi|332796641|ref|YP_004458141.1| - 6.2e-64 214.8 18.9 7.1e-64 214.6 18.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) AA_permease_2 PF13520.6 gi|332796642|ref|YP_004458142.1| - 1.5e-20 73.5 61.8 1.9e-20 73.1 61.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332796642|ref|YP_004458142.1| - 0.00019 20.2 60.0 0.00049 18.8 60.0 1.7 1 1 0 1 1 1 1 Amino acid permease Glyco_hydro_1 PF00232.18 gi|332796642|ref|YP_004458142.1| - 0.16 10.4 0.0 0.23 9.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 1 7kD_DNA_binding PF02294.18 gi|332796643|ref|YP_004458143.1| - 9e-39 131.3 5.4 9.8e-39 131.2 5.4 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain DUF2960 PF11173.8 gi|332796643|ref|YP_004458143.1| - 0.029 14.8 0.3 0.093 13.2 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2960) Peptidase_S9 PF00326.21 gi|332796644|ref|YP_004458144.1| - 5.2e-44 150.3 0.0 8.3e-44 149.6 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|332796644|ref|YP_004458144.1| - 1.1e-14 54.7 0.2 9e-09 35.3 0.2 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.18 gi|332796644|ref|YP_004458144.1| - 4.8e-12 45.9 0.0 1.5e-11 44.3 0.0 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|332796644|ref|YP_004458144.1| - 5.9e-11 42.1 0.0 1.9e-05 24.1 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|332796644|ref|YP_004458144.1| - 6.5e-09 35.0 4.2 0.0001 21.2 0.5 3.1 1 1 1 2 2 2 2 Dipeptidyl peptidase IV (DPP IV) N-terminal region BAAT_C PF08840.11 gi|332796644|ref|YP_004458144.1| - 8.9e-06 25.8 0.0 0.00033 20.7 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_6 PF12697.7 gi|332796644|ref|YP_004458144.1| - 9.7e-05 23.1 0.0 0.0011 19.7 0.0 1.9 1 1 0 2 2 2 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|332796644|ref|YP_004458144.1| - 0.00019 21.1 0.0 0.0051 16.4 0.1 2.6 2 1 1 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) Esterase PF00756.20 gi|332796644|ref|YP_004458144.1| - 0.00045 19.9 0.0 0.001 18.8 0.0 1.5 1 0 0 1 1 1 1 Putative esterase Abhydrolase_3 PF07859.13 gi|332796644|ref|YP_004458144.1| - 0.0087 15.9 0.0 0.082 12.8 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold ANAPC4_WD40 PF12894.7 gi|332796644|ref|YP_004458144.1| - 0.037 14.3 0.0 0.41 11.0 0.0 2.3 1 1 1 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain Abhydrolase_4 PF08386.10 gi|332796644|ref|YP_004458144.1| - 0.037 14.1 0.0 0.071 13.2 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Peptidase_S28 PF05577.12 gi|332796644|ref|YP_004458144.1| - 0.045 12.5 0.0 0.08 11.7 0.0 1.3 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF829 PF05705.14 gi|332796644|ref|YP_004458144.1| - 0.059 13.3 0.0 0.26 11.1 0.0 2.0 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF829) Kelch_3 PF13415.6 gi|332796644|ref|YP_004458144.1| - 0.084 13.2 1.5 2.3 8.6 0.0 3.8 5 0 0 5 5 4 0 Galactose oxidase, central domain Tannase PF07519.11 gi|332796644|ref|YP_004458144.1| - 0.1 11.5 0.0 0.22 10.4 0.0 1.5 2 0 0 2 2 2 0 Tannase and feruloyl esterase DUF2048 PF09752.9 gi|332796644|ref|YP_004458144.1| - 0.13 11.3 0.0 0.35 9.9 0.0 1.6 2 0 0 2 2 2 0 Abhydrolase domain containing 18 DUF4652 PF15525.6 gi|332796644|ref|YP_004458144.1| - 1.2 8.9 11.0 2 8.2 3.2 3.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4652) DUF87 PF01935.17 gi|332796645|ref|YP_004458145.1| - 1.2e-21 77.9 3.8 2.3e-20 73.7 2.0 2.6 1 1 1 2 2 2 1 Helicase HerA, central domain RAMPs PF03787.15 gi|332796645|ref|YP_004458145.1| - 0.0001 22.4 1.2 0.014 15.4 0.2 2.2 2 0 0 2 2 2 2 RAMP superfamily TrwB_AAD_bind PF10412.9 gi|332796645|ref|YP_004458145.1| - 0.012 14.6 0.0 0.083 11.8 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ResIII PF04851.15 gi|332796645|ref|YP_004458145.1| - 0.048 13.6 1.6 0.11 12.5 0.0 2.2 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit FtsK_SpoIIIE PF01580.18 gi|332796645|ref|YP_004458145.1| - 0.08 12.3 0.2 9.1 5.5 0.0 2.8 2 1 0 3 3 3 0 FtsK/SpoIIIE family NurA PF09376.10 gi|332796646|ref|YP_004458146.1| - 2.4e-10 40.5 0.6 6.2e-06 26.1 0.1 2.2 1 1 1 2 2 2 2 NurA domain ThiP_synth PF10120.9 gi|332796647|ref|YP_004458147.1| - 1.4e-47 161.4 0.1 1.8e-47 161.0 0.1 1.1 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|332796647|ref|YP_004458147.1| - 0.0016 18.3 0.0 0.0035 17.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|332796647|ref|YP_004458147.1| - 0.011 15.5 0.2 0.57 10.0 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_3 PF01381.22 gi|332796647|ref|YP_004458147.1| - 0.019 15.0 0.1 0.042 13.9 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix HTH_23 PF13384.6 gi|332796647|ref|YP_004458147.1| - 0.03 14.1 0.1 0.065 13.1 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|332796647|ref|YP_004458147.1| - 0.042 13.5 0.0 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RepB PF07506.11 gi|332796647|ref|YP_004458147.1| - 0.044 13.9 0.0 0.11 12.5 0.0 1.6 1 1 0 1 1 1 0 RepB plasmid partitioning protein P22_Cro PF14549.6 gi|332796647|ref|YP_004458147.1| - 0.05 13.4 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|332796647|ref|YP_004458147.1| - 0.1 12.5 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT DUF2316 PF10078.9 gi|332796647|ref|YP_004458147.1| - 0.16 12.3 0.1 6.2 7.1 0.0 2.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2316) MMPL PF03176.15 gi|332796648|ref|YP_004458148.1| - 1.5e-49 168.7 20.7 1.9e-28 99.4 7.4 2.2 2 0 0 2 2 2 2 MMPL family Peptidase_M50 PF02163.22 gi|332796651|ref|YP_004458151.1| - 1.4e-08 34.3 10.6 1.7e-05 24.2 1.0 3.1 1 1 1 2 2 2 2 Peptidase family M50 Rhomboid PF01694.22 gi|332796652|ref|YP_004458152.1| - 2.9e-18 66.3 8.9 2.9e-18 66.3 8.9 1.9 2 0 0 2 2 2 1 Rhomboid family AAA_18 PF13238.6 gi|332796654|ref|YP_004458154.1| - 1.5e-18 67.6 0.0 2.7e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332796654|ref|YP_004458154.1| - 7e-05 23.3 0.1 0.0005 20.5 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.6 gi|332796654|ref|YP_004458154.1| - 0.00068 20.1 0.0 0.0059 17.0 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|332796654|ref|YP_004458154.1| - 0.0018 18.4 0.0 0.0079 16.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|332796654|ref|YP_004458154.1| - 0.0046 16.7 0.0 0.29 10.8 0.0 2.2 2 0 0 2 2 2 1 Cytidylate kinase AAA_28 PF13521.6 gi|332796654|ref|YP_004458154.1| - 0.0057 16.9 0.0 0.013 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|332796654|ref|YP_004458154.1| - 0.0064 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|332796654|ref|YP_004458154.1| - 0.0087 15.8 0.2 0.033 13.9 0.1 2.1 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain dNK PF01712.19 gi|332796654|ref|YP_004458154.1| - 0.0088 15.9 1.2 0.07 13.0 0.1 2.1 1 1 1 2 2 2 1 Deoxynucleoside kinase KTI12 PF08433.10 gi|332796654|ref|YP_004458154.1| - 0.015 14.8 0.2 0.03 13.8 0.0 1.6 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Pyr_excise PF03013.14 gi|332796654|ref|YP_004458154.1| - 0.016 15.2 0.2 0.091 12.7 0.1 1.9 2 0 0 2 2 2 0 Pyrimidine dimer DNA glycosylase AAA_22 PF13401.6 gi|332796654|ref|YP_004458154.1| - 0.018 15.3 0.0 0.041 14.1 0.0 1.6 1 1 0 1 1 1 0 AAA domain JHBP PF06585.11 gi|332796654|ref|YP_004458154.1| - 0.028 13.6 0.3 0.13 11.4 0.0 1.9 2 0 0 2 2 2 0 Haemolymph juvenile hormone binding protein (JHBP) RNA_helicase PF00910.22 gi|332796654|ref|YP_004458154.1| - 0.038 14.4 0.1 0.11 12.9 0.0 1.8 2 0 0 2 2 2 0 RNA helicase AAA_16 PF13191.6 gi|332796654|ref|YP_004458154.1| - 0.051 14.0 0.7 0.11 12.9 0.7 1.9 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|332796654|ref|YP_004458154.1| - 0.054 13.6 0.1 0.1 12.7 0.1 1.7 1 1 0 1 1 1 0 Shikimate kinase NTPase_1 PF03266.15 gi|332796654|ref|YP_004458154.1| - 0.071 13.0 0.3 0.14 12.1 0.3 2.0 1 1 0 1 1 1 0 NTPase AAA_26 PF13500.6 gi|332796654|ref|YP_004458154.1| - 0.16 11.8 1.8 0.9 9.3 0.1 2.3 2 1 1 3 3 3 0 AAA domain ParA PF10609.9 gi|332796655|ref|YP_004458155.1| - 2.1e-98 328.7 0.1 2.5e-98 328.4 0.1 1.0 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|332796655|ref|YP_004458155.1| - 5.5e-13 49.1 0.0 5.3e-12 45.9 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|332796655|ref|YP_004458155.1| - 3.8e-11 43.2 1.4 1.5e-07 31.5 0.6 2.5 1 1 2 3 3 3 2 AAA domain Fer4_NifH PF00142.18 gi|332796655|ref|YP_004458155.1| - 3.7e-09 36.4 0.1 4.9e-06 26.2 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|332796655|ref|YP_004458155.1| - 8.3e-06 25.3 0.0 1.4e-05 24.5 0.0 1.4 1 1 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|332796655|ref|YP_004458155.1| - 1.6e-05 24.2 3.4 9.8e-05 21.7 1.1 2.3 2 1 0 2 2 2 1 Anion-transporting ATPase MeaB PF03308.16 gi|332796655|ref|YP_004458155.1| - 0.00036 19.6 0.2 0.00056 19.0 0.2 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|332796655|ref|YP_004458155.1| - 0.0092 15.6 0.1 0.015 14.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|332796655|ref|YP_004458155.1| - 0.017 14.9 1.0 1.1 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain CBP_BcsQ PF06564.12 gi|332796655|ref|YP_004458155.1| - 0.072 12.6 0.0 0.47 9.9 0.1 2.1 3 0 0 3 3 3 0 Cellulose biosynthesis protein BcsQ DUF4898 PF16239.5 gi|332796655|ref|YP_004458155.1| - 0.073 13.0 0.6 0.14 12.1 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4898) IstB_IS21 PF01695.17 gi|332796655|ref|YP_004458155.1| - 0.19 11.4 0.0 0.4 10.4 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF2153 PF09921.9 gi|332796656|ref|YP_004458156.1| - 0.00061 19.6 0.1 0.0007 19.4 0.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2153) YjcQ PF09639.10 gi|332796656|ref|YP_004458156.1| - 0.0019 18.4 0.1 0.0024 18.1 0.1 1.1 1 0 0 1 1 1 1 YjcQ protein DUF5457 PF17540.2 gi|332796656|ref|YP_004458156.1| - 0.0046 17.0 0.7 0.0093 16.0 0.7 1.5 1 1 0 1 1 1 1 Family of unknown function (DUF5457) HTH_57 PF18679.1 gi|332796656|ref|YP_004458156.1| - 0.02 15.2 0.1 0.024 15.0 0.1 1.1 1 0 0 1 1 1 0 ThcOx helix turn helix domain ANAPC2 PF08672.11 gi|332796656|ref|YP_004458156.1| - 0.07 13.7 0.1 0.28 11.7 0.1 1.9 1 1 1 2 2 2 0 Anaphase promoting complex (APC) subunit 2 DUF3263 PF11662.8 gi|332796656|ref|YP_004458156.1| - 0.13 12.1 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) TrmB PF01978.19 gi|332796657|ref|YP_004458157.1| - 1.1e-14 54.1 0.1 2.8e-14 52.7 0.0 1.6 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|332796657|ref|YP_004458157.1| - 8.4e-08 32.0 0.0 1.3e-07 31.4 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|332796657|ref|YP_004458157.1| - 5.9e-07 29.3 0.1 6.2e-07 29.2 0.1 1.0 1 0 0 1 1 1 1 TFIIE alpha subunit MarR PF01047.22 gi|332796657|ref|YP_004458157.1| - 3.6e-06 26.8 0.1 5.9e-06 26.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|332796657|ref|YP_004458157.1| - 8.3e-05 22.4 0.8 0.0002 21.1 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|332796657|ref|YP_004458157.1| - 0.00016 21.8 0.1 0.0004 20.5 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DUF4423 PF14394.6 gi|332796657|ref|YP_004458157.1| - 0.00086 19.0 0.5 0.0021 17.8 0.1 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|332796657|ref|YP_004458157.1| - 0.0009 19.5 0.1 0.0015 18.8 0.1 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_CodY PF08222.11 gi|332796657|ref|YP_004458157.1| - 0.0011 18.5 0.4 0.0016 17.9 0.3 1.4 1 1 0 1 1 1 1 CodY helix-turn-helix domain HTH_27 PF13463.6 gi|332796657|ref|YP_004458157.1| - 0.0016 18.9 0.1 0.0041 17.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|332796657|ref|YP_004458157.1| - 0.0018 17.8 0.1 0.003 17.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|332796657|ref|YP_004458157.1| - 0.0019 18.2 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|332796657|ref|YP_004458157.1| - 0.0023 17.8 0.1 0.0041 17.1 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Cdc6_C PF09079.11 gi|332796657|ref|YP_004458157.1| - 0.0033 17.4 0.0 0.0065 16.4 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HTH_34 PF13601.6 gi|332796657|ref|YP_004458157.1| - 0.008 16.3 0.0 0.012 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|332796657|ref|YP_004458157.1| - 0.0082 16.2 0.1 0.013 15.6 0.1 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.6 gi|332796657|ref|YP_004458157.1| - 0.0084 16.1 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_micro PF17007.5 gi|332796657|ref|YP_004458157.1| - 0.025 13.4 0.4 0.029 13.2 0.4 1.0 1 0 0 1 1 1 0 HTH-like PadR PF03551.14 gi|332796657|ref|YP_004458157.1| - 0.032 14.2 0.0 0.048 13.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_23 PF13384.6 gi|332796657|ref|YP_004458157.1| - 0.046 13.5 0.0 0.081 12.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain B-block_TFIIIC PF04182.12 gi|332796657|ref|YP_004458157.1| - 0.05 13.8 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC RP-C PF03428.13 gi|332796657|ref|YP_004458157.1| - 0.068 12.8 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF4473 PF14747.6 gi|332796657|ref|YP_004458157.1| - 0.071 13.7 0.3 1.4 9.5 0.0 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4473) HTH_IclR PF09339.10 gi|332796657|ref|YP_004458157.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain LysE PF01810.18 gi|332796658|ref|YP_004458158.1| - 4.8e-09 36.0 12.3 7.7e-09 35.3 12.3 1.3 1 0 0 1 1 1 1 LysE type translocator DUF5455 PF17537.2 gi|332796658|ref|YP_004458158.1| - 0.046 14.1 4.5 0.046 14.1 4.5 2.3 3 0 0 3 3 3 0 Family of unknown function (DUF5455) DPM3 PF08285.11 gi|332796658|ref|YP_004458158.1| - 0.32 11.2 4.1 0.12 12.6 1.2 1.9 2 0 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) HTH_7 PF02796.15 gi|332796659|ref|YP_004458159.1| - 6.5e-19 67.7 10.1 1.1e-07 31.8 0.5 3.2 3 0 0 3 3 3 3 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|332796659|ref|YP_004458159.1| - 7.6e-18 64.0 6.5 2.5e-06 27.1 0.2 3.1 3 0 0 3 3 3 3 Helix-turn-helix domain HTH_23 PF13384.6 gi|332796659|ref|YP_004458159.1| - 8.4e-16 57.3 0.3 1.1e-06 28.3 0.0 3.2 2 1 0 3 3 3 3 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|332796659|ref|YP_004458159.1| - 1.6e-11 43.7 3.3 0.00032 20.3 0.2 3.1 3 0 0 3 3 3 2 Sigma-70, region 4 TnsD PF15978.5 gi|332796659|ref|YP_004458159.1| - 1.6e-10 40.6 9.5 0.00084 18.4 1.7 3.0 1 1 2 3 3 3 3 Tn7-like transposition protein D HTH_40 PF14493.6 gi|332796659|ref|YP_004458159.1| - 1.4e-09 38.3 4.0 0.051 14.0 0.1 3.2 2 1 1 3 3 3 3 Helix-turn-helix domain HTH_28 PF13518.6 gi|332796659|ref|YP_004458159.1| - 1.5e-08 34.6 0.0 0.0095 16.0 0.0 3.0 3 0 0 3 3 3 2 Helix-turn-helix domain GerE PF00196.19 gi|332796659|ref|YP_004458159.1| - 9.4e-08 31.5 4.5 0.12 11.9 0.1 3.2 3 0 0 3 3 3 3 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|332796659|ref|YP_004458159.1| - 2e-07 30.8 1.4 0.098 12.5 0.1 3.5 3 1 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|332796659|ref|YP_004458159.1| - 4.5e-07 29.8 0.1 0.0017 18.3 0.0 3.1 3 0 0 3 3 3 1 Winged helix-turn helix HTH_24 PF13412.6 gi|332796659|ref|YP_004458159.1| - 8.3e-07 28.5 0.2 0.074 12.6 0.0 3.3 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding GcrA PF07750.11 gi|332796659|ref|YP_004458159.1| - 1.5e-06 28.8 0.5 0.035 14.5 0.0 2.8 1 1 1 3 3 3 2 GcrA cell cycle regulator Sigma70_ECF PF07638.11 gi|332796659|ref|YP_004458159.1| - 1.3e-05 25.1 1.7 0.19 11.6 0.1 2.9 1 1 2 3 3 3 2 ECF sigma factor Sigma70_r4 PF04545.16 gi|332796659|ref|YP_004458159.1| - 1.5e-05 24.4 1.5 0.002 17.6 0.1 3.0 3 0 0 3 3 3 1 Sigma-70, region 4 HTH_Tnp_IS630 PF01710.16 gi|332796659|ref|YP_004458159.1| - 1.6e-05 25.0 10.6 2.1e-05 24.5 5.3 2.1 2 0 0 2 2 2 1 Transposase ANT PF03374.14 gi|332796659|ref|YP_004458159.1| - 1.7e-05 25.1 2.1 0.014 15.7 0.0 3.0 1 1 2 3 3 3 1 Phage antirepressor protein KilAC domain IF2_N PF04760.15 gi|332796659|ref|YP_004458159.1| - 2.3e-05 24.1 13.7 0.083 12.7 0.2 4.0 3 1 2 5 5 4 2 Translation initiation factor IF-2, N-terminal region Terminase_5 PF06056.12 gi|332796659|ref|YP_004458159.1| - 5.3e-05 23.0 0.3 0.59 10.1 0.0 3.2 3 0 0 3 3 3 1 Putative ATPase subunit of terminase (gpP-like) Recombinase PF07508.13 gi|332796659|ref|YP_004458159.1| - 8.7e-05 22.9 6.6 0.17 12.3 0.2 3.4 2 1 1 3 3 3 1 Recombinase HTH_10 PF04967.12 gi|332796659|ref|YP_004458159.1| - 8.7e-05 22.2 2.1 1.6 8.6 0.0 3.4 3 1 0 3 3 3 1 HTH DNA binding domain PAX PF00292.18 gi|332796659|ref|YP_004458159.1| - 0.00013 21.9 0.2 0.048 13.6 0.1 2.8 1 1 2 3 3 3 1 'Paired box' domain HTH_Tnp_1 PF01527.20 gi|332796659|ref|YP_004458159.1| - 0.00015 22.0 0.3 0.47 10.8 0.0 3.0 3 0 0 3 3 3 1 Transposase HTH_Tnp_ISL3 PF13542.6 gi|332796659|ref|YP_004458159.1| - 0.00017 21.0 0.0 1.6 8.2 0.0 3.0 3 0 0 3 3 3 1 Helix-turn-helix domain of transposase family ISL3 HTH_Tnp_IS1 PF12759.7 gi|332796659|ref|YP_004458159.1| - 0.00032 20.2 0.0 0.62 9.7 0.1 3.0 3 0 0 3 3 3 1 InsA C-terminal domain Sigma70_r3 PF04539.16 gi|332796659|ref|YP_004458159.1| - 0.0004 20.4 1.9 0.012 15.6 0.1 3.6 3 1 0 3 3 3 1 Sigma-70 region 3 HTH_11 PF08279.12 gi|332796659|ref|YP_004458159.1| - 0.00046 20.1 3.0 0.37 10.8 0.1 3.3 3 1 0 3 3 3 1 HTH domain FumaraseC_C PF10415.9 gi|332796659|ref|YP_004458159.1| - 0.00047 20.5 1.2 0.17 12.3 0.1 3.3 2 2 1 3 3 3 1 Fumarase C C-terminus TrmB PF01978.19 gi|332796659|ref|YP_004458159.1| - 0.00059 19.7 4.4 0.12 12.2 0.1 3.2 2 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|332796659|ref|YP_004458159.1| - 0.0013 19.0 3.7 4.1 7.8 0.0 3.2 3 0 0 3 3 3 0 Transcriptional regulator HTH_9 PF08221.11 gi|332796659|ref|YP_004458159.1| - 0.0014 18.6 2.0 0.31 11.2 0.0 3.3 3 1 0 3 3 3 1 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF2316 PF10078.9 gi|332796659|ref|YP_004458159.1| - 0.0017 18.6 0.7 0.13 12.6 0.1 3.0 1 1 2 3 3 3 1 Uncharacterized protein conserved in bacteria (DUF2316) Phage_antitermQ PF06530.12 gi|332796659|ref|YP_004458159.1| - 0.002 18.0 6.9 0.61 10.0 0.3 2.9 1 1 2 3 3 3 2 Phage antitermination protein Q HTH_32 PF13565.6 gi|332796659|ref|YP_004458159.1| - 0.0022 18.6 0.0 6.6 7.4 0.0 3.0 3 0 0 3 3 3 0 Homeodomain-like domain Phage_terminase PF10668.9 gi|332796659|ref|YP_004458159.1| - 0.0026 17.8 2.9 0.061 13.3 0.2 2.6 3 0 0 3 3 2 1 Phage terminase small subunit HTH_6 PF01418.17 gi|332796659|ref|YP_004458159.1| - 0.003 17.5 1.5 3.2 7.8 0.0 3.2 1 1 2 3 3 3 0 Helix-turn-helix domain, rpiR family HTH_50 PF18024.1 gi|332796659|ref|YP_004458159.1| - 0.0037 16.9 2.2 2 8.1 0.0 2.6 3 0 0 3 3 2 2 Helix-turn-helix domain CENP-B_N PF04218.13 gi|332796659|ref|YP_004458159.1| - 0.007 16.0 9.1 0.036 13.7 0.4 3.3 2 1 1 3 3 3 1 CENP-B N-terminal DNA-binding domain MarR PF01047.22 gi|332796659|ref|YP_004458159.1| - 0.0076 16.2 0.3 11 6.0 0.0 3.3 3 0 0 3 3 3 0 MarR family HTH_25 PF13413.6 gi|332796659|ref|YP_004458159.1| - 0.008 16.0 0.4 16 5.4 0.0 3.3 3 0 0 3 3 3 0 Helix-turn-helix domain RPA_C PF08784.11 gi|332796659|ref|YP_004458159.1| - 0.0086 16.7 0.4 4.5 8.0 0.0 3.3 1 1 3 4 4 3 0 Replication protein A C terminal HTH_35 PF13693.6 gi|332796659|ref|YP_004458159.1| - 0.011 15.7 1.2 0.88 9.7 0.3 2.6 3 0 0 3 3 2 0 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_1 PF11427.8 gi|332796659|ref|YP_004458159.1| - 0.013 15.4 2.4 0.96 9.4 0.3 2.4 2 0 0 2 2 2 0 Tc3 transposase WYL_3 PF18488.1 gi|332796659|ref|YP_004458159.1| - 0.013 15.9 3.4 2.5 8.5 0.3 2.6 3 0 0 3 3 2 0 WYL domain HTH_30 PF13556.6 gi|332796659|ref|YP_004458159.1| - 0.014 15.2 0.0 1.1 9.1 0.0 2.8 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain Homeodomain PF00046.29 gi|332796659|ref|YP_004458159.1| - 0.015 15.1 1.4 1.2 9.0 0.1 3.2 2 1 1 3 3 3 0 Homeodomain DUF2089 PF09862.9 gi|332796659|ref|YP_004458159.1| - 0.018 15.1 3.8 1.3 9.1 0.7 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) SpoIIID PF12116.8 gi|332796659|ref|YP_004458159.1| - 0.019 15.1 2.7 0.14 12.3 0.3 2.5 1 1 0 2 2 2 0 Stage III sporulation protein D NUMOD1 PF07453.13 gi|332796659|ref|YP_004458159.1| - 0.019 15.2 6.6 1 9.7 0.2 2.9 3 0 0 3 3 2 0 NUMOD1 domain DUF2802 PF10975.8 gi|332796659|ref|YP_004458159.1| - 0.02 15.0 0.0 6.9 6.9 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF2802) DUF433 PF04255.14 gi|332796659|ref|YP_004458159.1| - 0.024 14.5 0.0 13 5.7 0.0 3.0 3 1 1 4 4 3 0 Protein of unknown function (DUF433) DUF2095 PF09868.9 gi|332796659|ref|YP_004458159.1| - 0.025 14.5 2.3 5.4 7.0 0.2 2.6 1 1 2 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2095) DUF3791 PF12668.7 gi|332796659|ref|YP_004458159.1| - 0.027 14.5 2.5 14 5.9 0.0 3.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3791) DUF2774 PF11242.8 gi|332796659|ref|YP_004458159.1| - 0.029 14.6 0.9 12 6.2 0.0 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2774) HTH_3 PF01381.22 gi|332796659|ref|YP_004458159.1| - 0.031 14.3 4.2 1.6 8.9 0.2 3.6 3 1 0 3 3 3 0 Helix-turn-helix DivIC PF04977.15 gi|332796659|ref|YP_004458159.1| - 0.031 14.0 1.1 0.031 14.0 1.1 2.8 2 1 1 3 3 3 0 Septum formation initiator HTH_20 PF12840.7 gi|332796659|ref|YP_004458159.1| - 0.037 14.1 0.0 11 6.2 0.0 3.0 3 0 0 3 3 3 0 Helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|332796659|ref|YP_004458159.1| - 0.041 13.7 0.0 39 4.1 0.0 3.1 3 0 0 3 3 3 0 LexA DNA binding domain MerR_1 PF13411.6 gi|332796659|ref|YP_004458159.1| - 0.052 13.7 6.3 9.7 6.4 0.1 4.0 2 1 2 4 4 4 0 MerR HTH family regulatory protein CCDC85 PF10226.9 gi|332796659|ref|YP_004458159.1| - 0.054 13.2 5.4 1 9.0 0.8 2.1 1 1 1 2 2 2 0 CCDC85 family GPAT_N PF14829.6 gi|332796659|ref|YP_004458159.1| - 0.055 13.5 1.1 0.11 12.5 0.5 1.8 1 1 1 2 2 1 0 Glycerol-3-phosphate acyltransferase N-terminal Pescadillo_N PF06732.11 gi|332796659|ref|YP_004458159.1| - 0.055 13.0 7.3 0.062 12.8 7.3 1.1 1 0 0 1 1 1 0 Pescadillo N-terminus HTH_17 PF12728.7 gi|332796659|ref|YP_004458159.1| - 0.063 13.5 1.3 3 8.1 0.0 2.8 3 0 0 3 3 2 0 Helix-turn-helix domain Mga PF05043.13 gi|332796659|ref|YP_004458159.1| - 0.083 13.5 5.9 14 6.4 0.4 3.2 1 1 2 3 3 3 0 Mga helix-turn-helix domain MarR_2 PF12802.7 gi|332796659|ref|YP_004458159.1| - 0.091 12.7 0.0 11 6.0 0.0 2.9 3 0 0 3 3 3 0 MarR family HTH_21 PF13276.6 gi|332796659|ref|YP_004458159.1| - 0.13 12.5 5.0 1.4 9.1 5.0 2.7 1 1 0 1 1 1 0 HTH-like domain Ribosomal_S13_N PF08069.12 gi|332796659|ref|YP_004458159.1| - 0.13 12.3 4.0 0.65 10.1 0.1 2.8 3 0 0 3 3 2 0 Ribosomal S13/S15 N-terminal domain Put_DNA-bind_N PF06971.13 gi|332796659|ref|YP_004458159.1| - 0.21 11.6 2.6 6.8 6.8 0.0 3.0 4 0 0 4 4 2 0 Putative DNA-binding protein N-terminus KxDL PF10241.9 gi|332796659|ref|YP_004458159.1| - 0.55 10.6 6.4 5.9 7.3 0.5 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein HTH_36 PF13730.6 gi|332796659|ref|YP_004458159.1| - 0.95 9.5 6.8 34 4.5 0.2 3.6 3 1 0 3 3 3 0 Helix-turn-helix domain NPA PF16469.5 gi|332796659|ref|YP_004458159.1| - 1.2 9.8 8.5 9.5 6.8 1.1 2.7 3 0 0 3 3 3 0 Nematode polyprotein allergen ABA-1 Bot1p PF12298.8 gi|332796659|ref|YP_004458159.1| - 1.7 8.8 8.4 56 3.8 8.0 2.4 1 1 1 2 2 2 0 Eukaryotic mitochondrial regulator protein tRNA-synt_1b PF00579.25 gi|332796660|ref|YP_004458160.1| - 1.5e-28 100.0 0.0 2.2e-28 99.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Lac_bphage_repr PF06543.12 gi|332796660|ref|YP_004458160.1| - 0.29 11.2 1.4 2.6 8.1 0.0 2.6 3 0 0 3 3 3 0 Lactococcus bacteriophage repressor Snf7 PF03357.21 gi|332796661|ref|YP_004458161.1| - 0.0021 17.7 0.5 0.0034 17.0 0.5 1.3 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.9 gi|332796661|ref|YP_004458161.1| - 0.0041 17.1 0.6 0.0072 16.3 0.6 1.4 1 0 0 1 1 1 1 Tumour suppressor protein Osmo_CC PF08946.10 gi|332796661|ref|YP_004458161.1| - 0.027 14.7 2.0 1.1 9.6 0.1 2.4 2 0 0 2 2 2 0 Osmosensory transporter coiled coil HK97-gp10_like PF04883.12 gi|332796661|ref|YP_004458161.1| - 0.029 15.4 1.7 0.13 13.3 0.1 2.3 2 0 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component TPR_10 PF13374.6 gi|332796661|ref|YP_004458161.1| - 0.13 12.2 0.2 0.3 11.0 0.2 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat CS PF04969.16 gi|332796662|ref|YP_004458162.1| - 0.009 17.0 1.2 0.012 16.7 1.2 1.2 1 0 0 1 1 1 1 CS domain tRNA-synt_2c PF01411.19 gi|332796663|ref|YP_004458163.1| - 2.2e-15 56.2 0.5 3e-15 55.8 0.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|332796663|ref|YP_004458163.1| - 1.5e-10 41.0 0.4 3e-10 40.0 0.4 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain GtrA PF04138.14 gi|332796664|ref|YP_004458164.1| - 4.3e-19 68.9 16.3 8.3e-19 68.0 16.3 1.4 1 1 0 1 1 1 1 GtrA-like protein p12I PF12233.8 gi|332796664|ref|YP_004458164.1| - 3.2 8.3 8.7 13 6.4 0.2 2.1 1 1 1 2 2 2 0 Human adult T cell leukemia/lymphoma virus protein Aminotran_1_2 PF00155.21 gi|332796665|ref|YP_004458165.1| - 3.7e-16 59.3 0.0 3.1e-15 56.2 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class I and II HTH_10 PF04967.12 gi|332796666|ref|YP_004458166.1| - 2.1e-20 72.3 0.2 3.6e-20 71.5 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|332796666|ref|YP_004458166.1| - 0.00048 19.6 0.3 0.0011 18.4 0.3 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding IF2_N PF04760.15 gi|332796666|ref|YP_004458166.1| - 0.00063 19.5 1.4 0.0025 17.6 0.2 2.6 2 1 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region MarR PF01047.22 gi|332796666|ref|YP_004458166.1| - 0.0055 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family Homeodomain PF00046.29 gi|332796666|ref|YP_004458166.1| - 0.0095 15.8 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Homeodomain HTH_3 PF01381.22 gi|332796666|ref|YP_004458166.1| - 0.012 15.7 0.0 0.034 14.2 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix Sigma70_r4 PF04545.16 gi|332796666|ref|YP_004458166.1| - 0.012 15.1 0.2 0.035 13.6 0.2 1.8 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_AraC PF00165.23 gi|332796666|ref|YP_004458166.1| - 0.014 15.5 0.1 0.12 12.6 0.0 2.4 2 1 1 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.7 gi|332796666|ref|YP_004458166.1| - 0.029 14.3 0.0 0.051 13.5 0.0 1.4 1 0 0 1 1 1 0 MarR family PCI PF01399.27 gi|332796666|ref|YP_004458166.1| - 0.036 14.6 1.2 0.074 13.6 0.5 1.8 2 0 0 2 2 2 0 PCI domain Sigma70_r3 PF04539.16 gi|332796666|ref|YP_004458166.1| - 0.043 13.9 0.3 0.13 12.4 0.2 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_Crp_2 PF13545.6 gi|332796666|ref|YP_004458166.1| - 0.13 12.2 0.0 4.1 7.5 0.1 2.7 2 1 1 3 3 3 0 Crp-like helix-turn-helix domain Phage_int_SAM_3 PF14659.6 gi|332796669|ref|YP_004458169.1| - 0.0033 17.6 0.1 0.0082 16.4 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain STN1_2 PF09170.10 gi|332796669|ref|YP_004458169.1| - 0.019 15.2 0.2 0.035 14.3 0.2 1.5 1 0 0 1 1 1 0 CST, Suppressor of cdc thirteen homolog, complex subunit STN1 Vpu PF00558.19 gi|332796669|ref|YP_004458169.1| - 0.44 10.3 4.2 0.29 10.9 0.7 2.3 2 0 0 2 2 2 0 Vpu protein AA_permease_2 PF13520.6 gi|332796670|ref|YP_004458170.1| - 6e-26 91.2 50.5 6e-26 91.2 50.5 2.0 1 1 1 2 2 2 2 Amino acid permease RAMP4 PF06624.12 gi|332796670|ref|YP_004458170.1| - 0.35 11.0 2.5 0.37 10.9 0.1 2.3 2 0 0 2 2 2 0 Ribosome associated membrane protein RAMP4 CoiA PF06054.11 gi|332796671|ref|YP_004458171.1| - 0.016 14.3 0.6 0.016 14.3 0.6 1.1 1 0 0 1 1 1 0 Competence protein CoiA-like family DUF308 PF03729.13 gi|332796672|ref|YP_004458172.1| - 0.029 14.7 9.4 0.029 14.7 9.4 1.9 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Saf_2TM PF18303.1 gi|332796672|ref|YP_004458172.1| - 0.034 13.7 2.9 0.062 12.9 0.4 2.0 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain DUF1622 PF07784.11 gi|332796672|ref|YP_004458172.1| - 0.053 13.4 1.7 0.07 13.0 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1622) LapA_dom PF06305.11 gi|332796672|ref|YP_004458172.1| - 0.055 13.3 0.6 0.055 13.3 0.6 2.5 1 1 1 2 2 2 0 Lipopolysaccharide assembly protein A domain Phage_holin_3_6 PF07332.11 gi|332796672|ref|YP_004458172.1| - 0.072 13.1 1.1 0.085 12.9 1.1 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Claudin_2 PF13903.6 gi|332796672|ref|YP_004458172.1| - 0.091 12.5 2.2 0.094 12.5 2.2 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF2964 PF11177.8 gi|332796672|ref|YP_004458172.1| - 0.24 11.6 7.3 0.092 13.0 4.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) DUF3040 PF11239.8 gi|332796672|ref|YP_004458172.1| - 0.33 11.3 2.4 0.54 10.6 2.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF929 PF06053.11 gi|332796673|ref|YP_004458173.1| - 2.9e-50 170.9 6.0 5.4e-50 170.0 6.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF929) PQQ_2 PF13360.6 gi|332796673|ref|YP_004458173.1| - 3.1e-27 95.7 0.0 1.2e-13 51.2 0.0 2.9 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|332796673|ref|YP_004458173.1| - 9.2e-19 66.4 11.2 3.9e-06 26.5 0.1 6.4 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|332796673|ref|YP_004458173.1| - 1.4e-15 57.2 17.8 0.0016 18.9 0.6 7.0 6 1 0 6 6 6 5 PQQ-like domain Gp58 PF07902.11 gi|332796674|ref|YP_004458174.1| - 0.00021 19.7 0.1 0.00024 19.5 0.1 1.0 1 0 0 1 1 1 1 gp58-like protein Peptidase_M32 PF02074.15 gi|332796675|ref|YP_004458175.1| - 1.8e-161 538.2 0.0 2e-161 538.1 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase 4HB_MCP_1 PF12729.7 gi|332796675|ref|YP_004458175.1| - 0.0018 17.9 1.2 0.0028 17.2 0.4 1.7 2 0 0 2 2 2 1 Four helix bundle sensory module for signal transduction DUF2748 PF10871.8 gi|332796675|ref|YP_004458175.1| - 0.0024 16.6 0.1 0.0046 15.7 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2748) SEP PF08059.13 gi|332796675|ref|YP_004458175.1| - 0.048 14.2 0.0 0.18 12.4 0.0 2.0 2 0 0 2 2 2 0 SEP domain ACT_6 PF13740.6 gi|332796676|ref|YP_004458176.1| - 3.2e-16 59.0 0.1 3.6e-16 58.9 0.1 1.1 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|332796676|ref|YP_004458176.1| - 8.4e-11 41.4 0.3 1.1e-10 41.1 0.3 1.1 1 0 0 1 1 1 1 ACT domain ACT_7 PF13840.6 gi|332796676|ref|YP_004458176.1| - 3.8e-06 26.6 0.7 5.6e-06 26.1 0.7 1.3 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|332796676|ref|YP_004458176.1| - 1.9e-05 25.2 0.5 2.5e-05 24.8 0.4 1.3 1 1 0 1 1 1 1 ACT domain DUF2110 PF09883.9 gi|332796676|ref|YP_004458176.1| - 0.08 12.5 0.7 0.7 9.4 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2110) KH_5 PF13184.6 gi|332796676|ref|YP_004458176.1| - 0.13 12.3 2.8 0.19 11.8 0.7 2.2 1 1 1 2 2 2 0 NusA-like KH domain DUF711 PF05167.12 gi|332796677|ref|YP_004458177.1| - 1.1e-121 406.6 0.8 1.3e-121 406.3 0.8 1.0 1 0 0 1 1 1 1 Uncharacterised ACR (DUF711) Glycos_transf_1 PF00534.20 gi|332796679|ref|YP_004458179.1| - 1e-31 109.8 0.4 3e-31 108.3 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332796679|ref|YP_004458179.1| - 1.4e-22 80.6 0.0 2.4e-22 79.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|332796679|ref|YP_004458179.1| - 8.7e-16 58.4 0.1 1.6e-15 57.5 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|332796679|ref|YP_004458179.1| - 5.2e-07 30.0 0.0 1.3e-06 28.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|332796679|ref|YP_004458179.1| - 0.00079 19.9 0.0 0.0012 19.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Amdase PF17645.1 gi|332796680|ref|YP_004458180.1| - 6.7e-12 45.5 0.0 8.3e-12 45.2 0.0 1.1 1 0 0 1 1 1 1 Arylmalonate decarboxylase Asp_Glu_race PF01177.22 gi|332796680|ref|YP_004458180.1| - 0.0012 18.8 0.1 0.003 17.4 0.1 1.6 1 1 0 1 1 1 1 Asp/Glu/Hydantoin racemase DUF3391 PF11871.8 gi|332796680|ref|YP_004458180.1| - 0.025 15.1 0.0 0.043 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) 7kD_DNA_binding PF02294.18 gi|332796682|ref|YP_004458182.1| - 1.6e-39 133.7 4.5 1.8e-39 133.6 4.5 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain DUF1641 PF07849.11 gi|332796683|ref|YP_004458183.1| - 8.7e-15 54.3 0.5 2.9e-13 49.5 0.2 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1641) Mating_N PF12731.7 gi|332796683|ref|YP_004458183.1| - 0.00041 20.4 1.0 0.019 15.1 0.0 2.5 1 1 1 2 2 2 1 Mating-type protein beta 1 RPN13_C PF16550.5 gi|332796683|ref|YP_004458183.1| - 0.00056 20.1 0.5 0.11 12.7 0.0 2.9 2 1 1 3 3 3 1 UCH-binding domain hnRNP_Q_AcD PF18360.1 gi|332796683|ref|YP_004458183.1| - 0.0025 17.7 0.3 8.3 6.4 0.0 3.6 4 0 0 4 4 4 1 Heterogeneous nuclear ribonucleoprotein Q acidic domain DUF724 PF05266.14 gi|332796683|ref|YP_004458183.1| - 0.0063 16.4 0.3 0.28 11.0 0.2 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF724) SHOCT PF09851.9 gi|332796683|ref|YP_004458183.1| - 0.012 15.4 2.7 1.7 8.5 0.3 3.0 3 0 0 3 3 3 0 Short C-terminal domain Dynactin_p22 PF07426.11 gi|332796683|ref|YP_004458183.1| - 0.016 15.1 1.8 0.043 13.7 1.8 1.8 1 1 0 1 1 1 0 Dynactin subunit p22 MgtE_N PF03448.17 gi|332796683|ref|YP_004458183.1| - 0.017 15.7 0.4 2.6 8.7 0.0 2.9 2 1 1 3 3 3 0 MgtE intracellular N domain DUF1804 PF08822.11 gi|332796683|ref|YP_004458183.1| - 0.088 12.8 0.4 8.9 6.3 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1804) RTBV_P12 PF06361.11 gi|332796683|ref|YP_004458183.1| - 0.14 12.6 1.6 0.97 9.9 0.2 2.6 2 1 1 3 3 3 0 Rice tungro bacilliform virus P12 protein Pyr_redox_2 PF07992.14 gi|332796684|ref|YP_004458184.1| - 1.1e-17 64.2 0.1 1.1e-16 61.0 0.1 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|332796684|ref|YP_004458184.1| - 0.00014 21.9 0.3 0.12 12.4 0.1 2.7 2 0 0 2 2 2 2 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|332796684|ref|YP_004458184.1| - 0.00057 18.8 0.2 0.0013 17.7 0.2 1.5 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.22 gi|332796684|ref|YP_004458184.1| - 0.0016 17.6 2.0 0.0063 15.6 0.0 2.2 2 0 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.24 gi|332796684|ref|YP_004458184.1| - 0.13 11.8 0.5 0.82 9.2 0.2 2.3 3 0 0 3 3 3 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|332796684|ref|YP_004458184.1| - 0.14 12.7 0.7 15 6.2 0.1 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase TusA PF01206.17 gi|332796685|ref|YP_004458185.1| - 1.8e-11 43.7 0.0 2e-11 43.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF87 PF01935.17 gi|332796686|ref|YP_004458186.1| - 1.1e-13 51.9 0.0 2.3e-13 50.8 0.0 1.6 1 1 0 1 1 1 1 Helicase HerA, central domain AAA_10 PF12846.7 gi|332796686|ref|YP_004458186.1| - 1.5e-05 24.1 0.1 0.0047 15.9 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain AAA_14 PF13173.6 gi|332796686|ref|YP_004458186.1| - 0.00079 19.5 0.0 0.0021 18.1 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|332796686|ref|YP_004458186.1| - 0.00082 19.7 0.2 0.02 15.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain CBM_26 PF16824.5 gi|332796686|ref|YP_004458186.1| - 0.0011 19.2 0.0 0.0017 18.5 0.0 1.4 1 0 0 1 1 1 1 C-terminal carbohydrate-binding module DUF853 PF05872.12 gi|332796686|ref|YP_004458186.1| - 0.0053 15.4 0.0 0.54 8.8 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) TrwB_AAD_bind PF10412.9 gi|332796686|ref|YP_004458186.1| - 0.011 14.7 0.0 0.034 13.1 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_18 PF13238.6 gi|332796686|ref|YP_004458186.1| - 0.019 15.5 0.0 0.032 14.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|332796686|ref|YP_004458186.1| - 0.067 12.9 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Lzipper-MIP1 PF14389.6 gi|332796687|ref|YP_004458187.1| - 0.055 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Leucine-zipper of ternary complex factor MIP1 PHTB1_N PF14727.6 gi|332796687|ref|YP_004458187.1| - 0.073 12.4 0.0 0.082 12.3 0.0 1.1 1 0 0 1 1 1 0 PTHB1 N-terminus Gpr1_Fun34_YaaH PF01184.19 gi|332796688|ref|YP_004458188.1| - 3e-44 151.1 24.6 3.9e-44 150.7 24.6 1.1 1 0 0 1 1 1 1 GPR1/FUN34/yaaH family Cytochrom_B_C PF00032.17 gi|332796688|ref|YP_004458188.1| - 0.5 10.7 6.3 0.98 9.7 6.1 1.6 1 1 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD AMP-binding PF00501.28 gi|332796689|ref|YP_004458189.1| - 3e-97 325.9 0.0 3.7e-97 325.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme ACAS_N PF16177.5 gi|332796689|ref|YP_004458189.1| - 1.1e-24 86.1 2.2 1.4e-24 85.8 0.7 2.0 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus AMP-binding_C PF13193.6 gi|332796689|ref|YP_004458189.1| - 1.5e-24 86.8 0.7 6.9e-24 84.6 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain DUF2045 PF09741.9 gi|332796689|ref|YP_004458189.1| - 0.051 13.0 0.0 0.094 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2045) MFS_1 PF07690.16 gi|332796690|ref|YP_004458190.1| - 3.7e-34 118.2 39.1 3.7e-34 118.2 39.1 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332796690|ref|YP_004458190.1| - 6.2e-20 71.5 33.7 1.9e-16 60.0 11.1 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_4 PF06779.14 gi|332796690|ref|YP_004458190.1| - 0.0012 18.2 11.7 0.0012 18.2 11.7 2.2 1 1 1 2 2 2 1 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|332796690|ref|YP_004458190.1| - 0.0045 15.9 9.6 0.0045 15.9 9.6 2.9 2 1 0 2 2 2 2 MFS_1 like family Saf_2TM PF18303.1 gi|332796690|ref|YP_004458190.1| - 0.12 11.9 5.9 0.21 11.2 0.5 2.6 2 0 0 2 2 2 0 SAVED-fused 2TM effector domain MFS_1 PF07690.16 gi|332796692|ref|YP_004458192.1| - 5e-31 107.9 47.9 1.3e-19 70.3 21.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332796692|ref|YP_004458192.1| - 1.6e-16 60.2 32.7 1.5e-13 50.4 13.4 2.2 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|332796692|ref|YP_004458192.1| - 7.7e-05 21.7 25.0 0.0089 14.9 5.2 2.3 1 1 1 2 2 2 2 MFS_1 like family Acetyltransf_10 PF13673.7 gi|332796693|ref|YP_004458193.1| - 4.4e-11 42.8 0.0 5.2e-11 42.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|332796693|ref|YP_004458193.1| - 4.1e-06 27.1 0.4 9.8e-06 25.9 0.4 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|332796693|ref|YP_004458193.1| - 0.00018 21.7 0.1 0.00032 20.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family MFS_1 PF07690.16 gi|332796694|ref|YP_004458194.1| - 4.7e-31 108.0 49.6 4.7e-31 108.0 49.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily CRPA PF05745.11 gi|332796694|ref|YP_004458194.1| - 0.06 13.4 3.2 0.14 12.1 3.1 1.8 1 1 0 1 1 1 0 Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA) Pox_A14 PF05767.12 gi|332796695|ref|YP_004458195.1| - 0.026 14.7 0.7 0.051 13.7 0.1 1.7 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 zinc_ribbon_2 PF13240.6 gi|332796696|ref|YP_004458196.1| - 3.1e-08 33.1 4.0 4.9e-08 32.4 4.0 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|332796696|ref|YP_004458196.1| - 1.6e-06 28.0 1.1 2.3e-06 27.5 1.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|332796696|ref|YP_004458196.1| - 8.3e-06 25.0 2.9 1.3e-05 24.4 2.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|332796696|ref|YP_004458196.1| - 0.016 16.0 0.1 0.021 15.5 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family DNA_RNApol_7kD PF03604.13 gi|332796696|ref|YP_004458196.1| - 0.045 13.4 1.1 0.72 9.6 0.1 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.18 gi|332796696|ref|YP_004458196.1| - 0.051 12.9 0.4 0.072 12.4 0.4 1.2 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Arm-DNA-bind_2 PF12167.8 gi|332796696|ref|YP_004458196.1| - 0.07 13.1 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Arm DNA-binding domain Nudix_N_2 PF14803.6 gi|332796696|ref|YP_004458196.1| - 0.1 12.5 1.7 3.8 7.5 0.2 2.5 2 0 0 2 2 2 0 Nudix N-terminal Mu-like_Com PF10122.9 gi|332796696|ref|YP_004458196.1| - 0.14 11.6 0.2 0.28 10.7 0.2 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com DUF35_N PF12172.8 gi|332796696|ref|YP_004458196.1| - 0.2 11.6 1.8 0.34 10.8 1.8 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-tcix PF14952.6 gi|332796696|ref|YP_004458196.1| - 6.5 6.5 9.2 0.99 9.1 5.1 1.7 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Glycos_transf_1 PF00534.20 gi|332796697|ref|YP_004458197.1| - 1.3e-18 67.1 0.1 5.9e-18 65.0 0.1 2.0 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332796697|ref|YP_004458197.1| - 6.2e-15 55.8 0.0 1.1e-14 55.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|332796697|ref|YP_004458197.1| - 5.5e-06 26.5 0.0 1e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|332796697|ref|YP_004458197.1| - 7.8e-05 23.0 0.0 0.00015 22.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Pyr_redox_2 PF07992.14 gi|332796698|ref|YP_004458198.1| - 4.4e-17 62.3 0.0 7.2e-08 32.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DUF948 PF06103.11 gi|332796699|ref|YP_004458199.1| - 0.092 13.0 0.4 0.15 12.3 0.4 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) CarboxypepD_reg PF13620.6 gi|332796701|ref|YP_004458201.1| - 7.7e-09 35.7 9.5 1.8e-05 24.9 2.7 3.5 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain HMMR_N PF15905.5 gi|332796701|ref|YP_004458201.1| - 8.4e-07 28.8 6.1 1.3e-06 28.2 6.1 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF4618 PF15397.6 gi|332796701|ref|YP_004458201.1| - 4.9e-06 26.2 10.9 0.0049 16.3 3.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) Baculo_PEP_C PF04513.12 gi|332796701|ref|YP_004458201.1| - 6.7e-06 26.2 32.5 0.00037 20.5 21.6 2.6 1 1 2 3 3 3 3 Baculovirus polyhedron envelope protein, PEP, C terminus CENP-F_leu_zip PF10473.9 gi|332796701|ref|YP_004458201.1| - 9.2e-06 25.7 12.0 0.00031 20.8 2.8 2.4 1 1 1 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_TATA_bd PF12325.8 gi|332796701|ref|YP_004458201.1| - 1.1e-05 25.7 10.7 0.0025 18.0 3.8 2.5 1 1 2 3 3 3 3 TATA element modulatory factor 1 TATA binding Golgin_A5 PF09787.9 gi|332796701|ref|YP_004458201.1| - 1.3e-05 24.9 3.8 1.8e-05 24.4 3.8 1.1 1 0 0 1 1 1 1 Golgin subfamily A member 5 Prefoldin_2 PF01920.20 gi|332796701|ref|YP_004458201.1| - 2e-05 24.5 4.8 0.11 12.5 0.1 3.1 1 1 2 3 3 3 2 Prefoldin subunit LPP PF04728.13 gi|332796701|ref|YP_004458201.1| - 2.2e-05 24.7 14.0 0.039 14.4 1.2 4.2 2 1 2 4 4 4 1 Lipoprotein leucine-zipper FlaC_arch PF05377.11 gi|332796701|ref|YP_004458201.1| - 3.5e-05 24.1 16.3 0.014 15.7 1.0 3.6 1 1 2 3 3 3 2 Flagella accessory protein C (FlaC) Cluap1 PF10234.9 gi|332796701|ref|YP_004458201.1| - 3.9e-05 23.2 2.8 0.014 14.8 1.0 2.1 2 0 0 2 2 2 1 Clusterin-associated protein-1 SlyX PF04102.12 gi|332796701|ref|YP_004458201.1| - 4.3e-05 24.0 6.3 0.011 16.3 0.9 3.1 2 1 0 2 2 2 1 SlyX bMG3 PF11974.8 gi|332796701|ref|YP_004458201.1| - 5.8e-05 23.1 0.0 0.0017 18.4 0.0 2.5 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain BRE1 PF08647.11 gi|332796701|ref|YP_004458201.1| - 8.8e-05 22.5 5.3 0.014 15.4 0.1 2.7 2 1 0 2 2 2 1 BRE1 E3 ubiquitin ligase Seryl_tRNA_N PF02403.22 gi|332796701|ref|YP_004458201.1| - 9.8e-05 22.5 4.2 0.018 15.3 0.4 2.2 1 1 1 2 2 2 1 Seryl-tRNA synthetase N-terminal domain bZIP_1 PF00170.21 gi|332796701|ref|YP_004458201.1| - 0.0001 22.3 12.9 0.096 12.8 1.6 3.2 2 1 1 3 3 3 2 bZIP transcription factor FPP PF05911.11 gi|332796701|ref|YP_004458201.1| - 0.00012 20.5 3.7 0.00016 20.0 3.7 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil APG6_N PF17675.1 gi|332796701|ref|YP_004458201.1| - 0.00014 22.4 5.0 0.014 16.0 0.1 2.1 1 1 1 2 2 2 1 Apg6 coiled-coil region Bacillus_HBL PF05791.11 gi|332796701|ref|YP_004458201.1| - 0.00014 21.7 10.2 0.0022 17.8 1.7 2.3 1 1 1 2 2 2 2 Bacillus haemolytic enterotoxin (HBL) Lectin_N PF03954.14 gi|332796701|ref|YP_004458201.1| - 0.00023 20.9 12.9 0.0016 18.2 5.8 2.5 1 1 1 2 2 2 1 Hepatic lectin, N-terminal domain TPR_MLP1_2 PF07926.12 gi|332796701|ref|YP_004458201.1| - 0.00026 21.1 7.2 0.14 12.2 1.1 2.1 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein DUF1640 PF07798.11 gi|332796701|ref|YP_004458201.1| - 0.0004 20.5 4.1 0.0019 18.3 4.1 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF1640) Lzipper-MIP1 PF14389.6 gi|332796701|ref|YP_004458201.1| - 0.00043 20.5 6.2 0.02 15.2 0.3 3.1 2 1 1 3 3 3 1 Leucine-zipper of ternary complex factor MIP1 FapA PF03961.13 gi|332796701|ref|YP_004458201.1| - 0.00065 18.4 4.7 0.0011 17.6 1.4 2.0 1 1 1 2 2 2 2 Flagellar Assembly Protein A Spc7 PF08317.11 gi|332796701|ref|YP_004458201.1| - 0.00072 18.5 6.3 0.054 12.4 1.1 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF3584 PF12128.8 gi|332796701|ref|YP_004458201.1| - 0.0008 17.1 2.3 0.0011 16.7 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Lebercilin PF15619.6 gi|332796701|ref|YP_004458201.1| - 0.0008 19.1 4.1 0.022 14.4 0.9 2.2 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease DUF812 PF05667.11 gi|332796701|ref|YP_004458201.1| - 0.00084 18.4 2.4 0.0012 17.8 2.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Big_1 PF02369.16 gi|332796701|ref|YP_004458201.1| - 0.00089 19.2 2.4 0.046 13.7 0.2 3.2 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CLZ PF16526.5 gi|332796701|ref|YP_004458201.1| - 0.0013 19.1 5.1 1 9.7 0.2 3.2 2 1 1 3 3 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels AAA_13 PF13166.6 gi|332796701|ref|YP_004458201.1| - 0.0016 17.2 5.2 0.0023 16.7 5.2 1.2 1 0 0 1 1 1 1 AAA domain UPF0242 PF06785.11 gi|332796701|ref|YP_004458201.1| - 0.0027 17.8 1.5 0.0045 17.1 1.5 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0242) N-terminus DUF4988 PF16378.5 gi|332796701|ref|YP_004458201.1| - 0.003 17.3 11.6 0.55 9.9 2.3 3.7 1 1 2 3 3 3 2 Domain of unknown function DivIC PF04977.15 gi|332796701|ref|YP_004458201.1| - 0.003 17.3 2.6 1.4 8.7 0.2 3.2 2 1 1 3 3 2 0 Septum formation initiator Spc24 PF08286.11 gi|332796701|ref|YP_004458201.1| - 0.0046 17.2 16.4 0.19 12.0 2.7 3.2 1 1 2 3 3 3 1 Spc24 subunit of Ndc80 Fez1 PF06818.15 gi|332796701|ref|YP_004458201.1| - 0.0055 17.2 3.6 0.011 16.2 3.6 1.4 1 1 0 1 1 1 1 Fez1 ADIP PF11559.8 gi|332796701|ref|YP_004458201.1| - 0.0059 16.7 13.2 0.064 13.3 3.6 2.7 1 1 0 2 2 2 1 Afadin- and alpha -actinin-Binding TMF_DNA_bd PF12329.8 gi|332796701|ref|YP_004458201.1| - 0.0061 16.5 16.4 0.046 13.7 2.0 3.0 1 1 2 3 3 3 1 TATA element modulatory factor 1 DNA binding Gp58 PF07902.11 gi|332796701|ref|YP_004458201.1| - 0.0062 14.9 6.9 0.0093 14.3 6.9 1.2 1 0 0 1 1 1 1 gp58-like protein ATG16 PF08614.11 gi|332796701|ref|YP_004458201.1| - 0.0064 16.7 9.4 0.13 12.5 2.5 2.1 1 1 0 2 2 2 1 Autophagy protein 16 (ATG16) IFT57 PF10498.9 gi|332796701|ref|YP_004458201.1| - 0.0074 15.3 7.2 0.0074 15.3 7.2 1.5 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF16 PF01519.16 gi|332796701|ref|YP_004458201.1| - 0.0076 16.7 4.8 2 8.9 1.2 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 DUF5082 PF16888.5 gi|332796701|ref|YP_004458201.1| - 0.0077 16.5 16.7 0.35 11.1 1.9 3.2 1 1 2 3 3 3 1 Domain of unknown function (DUF5082) YlqD PF11068.8 gi|332796701|ref|YP_004458201.1| - 0.0096 16.3 3.1 0.59 10.5 0.7 2.2 1 1 1 2 2 2 1 YlqD protein bZIP_2 PF07716.15 gi|332796701|ref|YP_004458201.1| - 0.0099 15.9 3.9 1.7 8.8 1.0 3.1 2 1 1 3 3 3 0 Basic region leucine zipper DUF3450 PF11932.8 gi|332796701|ref|YP_004458201.1| - 0.011 15.1 7.9 0.082 12.2 0.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) Tektin PF03148.14 gi|332796701|ref|YP_004458201.1| - 0.011 14.5 6.6 0.06 12.1 6.6 2.0 1 1 0 1 1 1 0 Tektin family GIT_CC PF16559.5 gi|332796701|ref|YP_004458201.1| - 0.014 15.2 9.0 0.5 10.3 0.1 3.6 2 1 1 3 3 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor PspA_IM30 PF04012.12 gi|332796701|ref|YP_004458201.1| - 0.014 15.0 1.8 4.5 6.8 0.0 2.5 1 1 2 3 3 3 0 PspA/IM30 family Filament PF00038.21 gi|332796701|ref|YP_004458201.1| - 0.014 15.0 7.4 0.6 9.6 1.6 2.1 1 1 1 2 2 2 0 Intermediate filament protein NPV_P10 PF05531.12 gi|332796701|ref|YP_004458201.1| - 0.016 15.7 13.6 3.1 8.3 7.5 3.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|332796701|ref|YP_004458201.1| - 0.016 15.2 9.9 0.029 14.4 1.5 2.7 2 1 1 3 3 2 0 Protein of unknown function (DUF1664) Cast PF10174.9 gi|332796701|ref|YP_004458201.1| - 0.019 13.2 6.7 0.026 12.8 6.7 1.0 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone SKA2 PF16740.5 gi|332796701|ref|YP_004458201.1| - 0.024 14.4 1.5 0.33 10.8 0.5 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 Atg14 PF10186.9 gi|332796701|ref|YP_004458201.1| - 0.028 13.5 2.0 2.1 7.3 0.7 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 WEMBL PF05701.11 gi|332796701|ref|YP_004458201.1| - 0.029 13.1 6.3 0.042 12.6 6.3 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Jnk-SapK_ap_N PF09744.9 gi|332796701|ref|YP_004458201.1| - 0.038 14.2 5.0 1.9 8.7 1.0 2.1 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 ZapB PF06005.12 gi|332796701|ref|YP_004458201.1| - 0.042 14.3 10.0 0.87 10.1 0.6 2.6 1 1 0 2 2 2 0 Cell division protein ZapB GAS PF13851.6 gi|332796701|ref|YP_004458201.1| - 0.044 13.1 5.0 0.32 10.3 5.0 1.9 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding FmiP_Thoc5 PF09766.9 gi|332796701|ref|YP_004458201.1| - 0.045 13.0 4.9 0.068 12.4 4.9 1.2 1 0 0 1 1 1 0 Fms-interacting protein/Thoc5 DUF2730 PF10805.8 gi|332796701|ref|YP_004458201.1| - 0.049 13.7 8.8 0.15 12.2 0.9 3.4 1 1 3 4 4 3 0 Protein of unknown function (DUF2730) DUF4140 PF13600.6 gi|332796701|ref|YP_004458201.1| - 0.049 14.1 0.3 15 6.1 0.0 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF641 PF04859.12 gi|332796701|ref|YP_004458201.1| - 0.052 13.9 5.2 1.8 8.9 0.5 2.6 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) HALZ PF02183.18 gi|332796701|ref|YP_004458201.1| - 0.055 13.7 3.6 7.7 6.8 0.2 2.9 2 1 0 2 2 2 0 Homeobox associated leucine zipper CCDC144C PF14915.6 gi|332796701|ref|YP_004458201.1| - 0.06 12.5 8.6 0.086 11.9 8.6 1.1 1 0 0 1 1 1 0 CCDC144C protein coiled-coil region AIP3 PF03915.13 gi|332796701|ref|YP_004458201.1| - 0.06 12.4 3.8 0.083 12.0 3.8 1.1 1 0 0 1 1 1 0 Actin interacting protein 3 WD40_alt PF14077.6 gi|332796701|ref|YP_004458201.1| - 0.066 13.1 3.4 4.3 7.3 0.2 3.6 2 1 2 4 4 3 0 Alternative WD40 repeat motif DUF713 PF05218.14 gi|332796701|ref|YP_004458201.1| - 0.07 12.9 3.6 0.75 9.5 0.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF713) CC2-LZ PF16516.5 gi|332796701|ref|YP_004458201.1| - 0.07 13.5 1.8 3.1 8.2 0.2 2.3 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Rab5-bind PF09311.11 gi|332796701|ref|YP_004458201.1| - 0.073 12.5 7.3 0.23 10.8 4.3 2.0 1 1 1 2 2 2 0 Rabaptin-like protein Leu_zip PF15294.6 gi|332796701|ref|YP_004458201.1| - 0.076 12.5 6.9 0.12 11.8 6.9 1.2 1 0 0 1 1 1 0 Leucine zipper DUF4200 PF13863.6 gi|332796701|ref|YP_004458201.1| - 0.095 13.1 0.9 46 4.4 0.7 3.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) ABC_tran_CTD PF16326.5 gi|332796701|ref|YP_004458201.1| - 0.1 12.9 3.4 7.8 6.8 0.0 2.5 2 0 0 2 2 2 0 ABC transporter C-terminal domain DUF4407 PF14362.6 gi|332796701|ref|YP_004458201.1| - 0.1 11.9 2.1 0.47 9.8 2.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Exonuc_VII_L PF02601.15 gi|332796701|ref|YP_004458201.1| - 0.11 12.1 1.3 0.16 11.5 1.3 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Cob_adeno_trans PF01923.18 gi|332796701|ref|YP_004458201.1| - 0.13 12.4 2.1 2.1 8.5 0.2 2.1 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Myosin_tail_1 PF01576.19 gi|332796701|ref|YP_004458201.1| - 0.13 10.0 1.6 0.18 9.6 1.6 1.1 1 0 0 1 1 1 0 Myosin tail Rootletin PF15035.6 gi|332796701|ref|YP_004458201.1| - 0.14 12.1 6.6 0.31 11.0 6.6 1.5 1 1 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion MbeD_MobD PF04899.12 gi|332796701|ref|YP_004458201.1| - 0.15 12.2 3.9 0.66 10.1 0.6 3.0 1 1 2 3 3 3 0 MbeD/MobD like JIP_LZII PF16471.5 gi|332796701|ref|YP_004458201.1| - 0.15 12.2 8.7 0.5 10.6 2.7 2.5 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II DUF2968 PF11180.8 gi|332796701|ref|YP_004458201.1| - 0.15 11.6 0.4 2.1 8.0 0.0 2.5 2 1 1 3 3 2 0 Protein of unknown function (DUF2968) Tup_N PF08581.10 gi|332796701|ref|YP_004458201.1| - 0.16 12.3 6.4 5.2 7.5 2.4 2.6 1 1 2 3 3 3 0 Tup N-terminal TolA_bind_tri PF16331.5 gi|332796701|ref|YP_004458201.1| - 0.16 12.1 4.6 0.66 10.1 0.2 2.6 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF724 PF05266.14 gi|332796701|ref|YP_004458201.1| - 0.16 11.8 0.7 0.83 9.5 0.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF724) XhlA PF10779.9 gi|332796701|ref|YP_004458201.1| - 0.18 12.0 8.7 0.54 10.5 0.8 3.1 2 1 1 3 3 2 0 Haemolysin XhlA Macoilin PF09726.9 gi|332796701|ref|YP_004458201.1| - 0.2 10.2 6.2 0.098 11.2 1.0 1.9 1 1 1 2 2 2 0 Macoilin family FAM76 PF16046.5 gi|332796701|ref|YP_004458201.1| - 0.2 11.0 3.6 1.8 7.8 3.5 2.0 1 1 0 1 1 1 0 FAM76 protein KASH_CCD PF14662.6 gi|332796701|ref|YP_004458201.1| - 0.21 11.4 11.5 9.4 6.0 2.0 1.9 1 1 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 gi|332796701|ref|YP_004458201.1| - 0.22 11.7 13.4 1.3 9.2 2.8 2.7 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4763 PF15960.5 gi|332796701|ref|YP_004458201.1| - 0.27 10.5 5.4 0.26 10.6 0.5 2.4 1 1 2 3 3 3 0 Domain of unknown function (DUF4763) CCDC-167 PF15188.6 gi|332796701|ref|YP_004458201.1| - 0.27 11.6 3.8 0.37 11.2 0.5 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Csm1_N PF18504.1 gi|332796701|ref|YP_004458201.1| - 0.29 11.5 11.1 1.7 9.1 1.8 3.0 1 1 2 3 3 2 0 Csm1 N-terminal domain CEP63 PF17045.5 gi|332796701|ref|YP_004458201.1| - 0.3 11.0 5.0 2.5 7.9 5.1 1.9 1 1 0 1 1 1 0 Centrosomal protein of 63 kDa TRAF_BIRC3_bd PF16673.5 gi|332796701|ref|YP_004458201.1| - 0.3 10.9 4.7 0.86 9.4 0.1 2.7 2 2 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Med4 PF10018.9 gi|332796701|ref|YP_004458201.1| - 0.3 10.7 7.2 4.1 7.0 0.3 3.0 1 1 2 3 3 3 0 Vitamin-D-receptor interacting Mediator subunit 4 Snapin_Pallidin PF14712.6 gi|332796701|ref|YP_004458201.1| - 0.31 11.5 7.9 6.7 7.2 2.1 2.4 1 1 1 2 2 2 0 Snapin/Pallidin CENP-H PF05837.12 gi|332796701|ref|YP_004458201.1| - 0.31 11.5 10.0 0.53 10.7 3.4 2.3 1 1 1 2 2 2 0 Centromere protein H (CENP-H) GrpE PF01025.19 gi|332796701|ref|YP_004458201.1| - 0.32 10.6 2.7 19 4.9 2.7 2.3 1 1 0 1 1 1 0 GrpE Uso1_p115_C PF04871.13 gi|332796701|ref|YP_004458201.1| - 0.35 11.3 6.2 7 7.0 6.2 2.1 1 1 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region SKA1 PF07160.12 gi|332796701|ref|YP_004458201.1| - 0.35 10.7 10.0 2.5 7.9 1.5 2.4 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 1 Nup54 PF13874.6 gi|332796701|ref|YP_004458201.1| - 0.37 10.9 5.3 7.2 6.7 5.3 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 MAD PF05557.13 gi|332796701|ref|YP_004458201.1| - 0.38 9.0 8.1 3 6.1 5.0 1.9 1 1 1 2 2 2 0 Mitotic checkpoint protein FAM184 PF15665.5 gi|332796701|ref|YP_004458201.1| - 0.39 10.4 1.3 0.83 9.4 1.3 1.5 1 1 0 1 1 1 0 Family with sequence similarity 184, A and B Prefoldin PF02996.17 gi|332796701|ref|YP_004458201.1| - 0.41 10.6 8.2 19 5.2 0.1 3.2 1 1 2 3 3 3 0 Prefoldin subunit COG2 PF06148.11 gi|332796701|ref|YP_004458201.1| - 0.42 10.7 9.9 2.5 8.2 2.8 2.5 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 COG5 PF10392.9 gi|332796701|ref|YP_004458201.1| - 0.46 10.7 12.1 1.7 8.8 4.5 2.6 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF1319 PF07028.11 gi|332796701|ref|YP_004458201.1| - 0.46 10.7 6.0 3.3 8.0 1.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1319) Tropomyosin_1 PF12718.7 gi|332796701|ref|YP_004458201.1| - 0.46 10.6 9.8 2.5e+02 1.7 9.8 2.5 1 1 0 1 1 1 0 Tropomyosin like DUF4472 PF14739.6 gi|332796701|ref|YP_004458201.1| - 0.53 11.0 7.0 4.2 8.1 0.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4472) Not3 PF04065.15 gi|332796701|ref|YP_004458201.1| - 0.56 9.6 6.2 5.1 6.5 0.9 2.2 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF5320 PF17253.2 gi|332796701|ref|YP_004458201.1| - 0.56 11.3 1.7 85 4.3 0.0 3.0 1 1 1 3 3 3 0 Family of unknown function (DUF5320) PI3K_P85_iSH2 PF16454.5 gi|332796701|ref|YP_004458201.1| - 0.57 9.8 5.0 2.3 7.8 2.8 2.1 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain BST2 PF16716.5 gi|332796701|ref|YP_004458201.1| - 0.58 10.8 9.3 6.6 7.4 3.0 2.9 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 EMP24_GP25L PF01105.24 gi|332796701|ref|YP_004458201.1| - 0.63 9.9 9.9 4.2 7.3 3.9 3.3 2 1 0 3 3 2 0 emp24/gp25L/p24 family/GOLD IFT20 PF14931.6 gi|332796701|ref|YP_004458201.1| - 0.66 10.2 5.0 13 6.0 0.3 2.3 2 0 0 2 2 2 0 Intraflagellar transport complex B, subunit 20 CALCOCO1 PF07888.11 gi|332796701|ref|YP_004458201.1| - 0.66 8.8 3.2 1.3 7.8 3.2 1.4 1 1 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like Phage_GP20 PF06810.11 gi|332796701|ref|YP_004458201.1| - 0.75 9.6 4.5 5.2 6.9 0.7 2.5 1 1 1 2 2 2 0 Phage minor structural protein GP20 GP41 PF00517.17 gi|332796701|ref|YP_004458201.1| - 0.78 9.6 8.5 3.1 7.6 8.5 2.0 1 1 0 1 1 1 0 Retroviral envelope protein TBK1_CCD1 PF18394.1 gi|332796701|ref|YP_004458201.1| - 0.81 9.2 14.2 3.7 7.0 1.2 3.0 1 1 2 3 3 3 0 TANK-binding kinase 1 coiled-coil domain 1 Rho_Binding PF08912.11 gi|332796701|ref|YP_004458201.1| - 0.88 10.4 7.5 12 6.8 0.5 3.0 2 1 1 3 3 3 0 Rho Binding BLOC1_2 PF10046.9 gi|332796701|ref|YP_004458201.1| - 0.92 9.8 14.9 2.7 8.4 6.5 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Swi5 PF07061.11 gi|332796701|ref|YP_004458201.1| - 1 9.5 8.3 20 5.4 0.2 3.2 2 1 1 3 3 3 0 Swi5 CorA PF01544.18 gi|332796701|ref|YP_004458201.1| - 1.1 8.6 16.2 0.25 10.6 13.1 1.5 1 1 1 2 2 1 0 CorA-like Mg2+ transporter protein TACC_C PF05010.14 gi|332796701|ref|YP_004458201.1| - 1.1 9.1 4.3 3 7.6 4.3 1.6 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal MIP-T3_C PF17749.1 gi|332796701|ref|YP_004458201.1| - 1.1 9.2 6.1 14 5.7 0.1 2.4 2 1 0 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Fzo_mitofusin PF04799.13 gi|332796701|ref|YP_004458201.1| - 1.2 8.7 10.1 1 8.9 2.1 2.8 1 1 2 3 3 3 0 fzo-like conserved region End3 PF12761.7 gi|332796701|ref|YP_004458201.1| - 1.3 9.2 6.1 6 7.0 6.1 1.9 1 1 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 Syntaxin-6_N PF09177.11 gi|332796701|ref|YP_004458201.1| - 1.3 9.7 11.5 3.7 8.1 4.0 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal MscS_porin PF12795.7 gi|332796701|ref|YP_004458201.1| - 1.3 8.5 11.4 7.9 6.0 11.1 2.1 1 1 0 1 1 1 0 Mechanosensitive ion channel porin domain HAUS-augmin3 PF14932.6 gi|332796701|ref|YP_004458201.1| - 1.3 8.5 8.5 3.9 7.0 8.5 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 GCN5L1 PF06320.13 gi|332796701|ref|YP_004458201.1| - 1.4 9.1 3.2 12 6.0 0.2 2.5 1 1 2 3 3 3 0 GCN5-like protein 1 (GCN5L1) HAP1_N PF04849.13 gi|332796701|ref|YP_004458201.1| - 1.4 8.1 11.1 2.1 7.5 4.7 1.9 1 1 0 1 1 1 0 HAP1 N-terminal conserved region E2F_CC-MB PF16421.5 gi|332796701|ref|YP_004458201.1| - 1.5 9.3 4.3 17 5.8 0.1 3.0 3 0 0 3 3 2 0 E2F transcription factor CC-MB domain DUF4795 PF16043.5 gi|332796701|ref|YP_004458201.1| - 1.6 8.3 9.5 2 8.0 1.9 2.4 1 1 0 2 2 2 0 Domain of unknown function (DUF4795) Cnn_1N PF07989.11 gi|332796701|ref|YP_004458201.1| - 1.8 8.8 6.1 5.2 7.3 0.5 2.3 1 1 0 2 2 2 0 Centrosomin N-terminal motif 1 Fungal_TACC PF12709.7 gi|332796701|ref|YP_004458201.1| - 1.8 9.0 8.0 28 5.2 1.0 3.2 1 1 2 3 3 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF4201 PF13870.6 gi|332796701|ref|YP_004458201.1| - 2 8.1 9.0 2.8 7.6 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) Laminin_II PF06009.12 gi|332796701|ref|YP_004458201.1| - 2.1 8.4 13.1 4.3 7.4 5.3 2.3 1 1 1 2 2 2 0 Laminin Domain II USP8_interact PF08941.10 gi|332796701|ref|YP_004458201.1| - 2.1 8.1 4.2 3.5 7.4 0.9 2.1 1 1 1 2 2 2 0 USP8 interacting Fmp27_WPPW PF10359.9 gi|332796701|ref|YP_004458201.1| - 2.1 7.1 5.8 5.7 5.7 5.8 1.6 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain SF-assemblin PF06705.11 gi|332796701|ref|YP_004458201.1| - 2.2 7.6 13.0 4.4 6.6 4.6 2.4 1 1 1 2 2 2 0 SF-assemblin/beta giardin Vps51 PF08700.11 gi|332796701|ref|YP_004458201.1| - 2.3 8.4 9.7 22 5.2 0.2 3.5 2 2 2 4 4 4 0 Vps51/Vps67 BCAS2 PF05700.11 gi|332796701|ref|YP_004458201.1| - 2.8 7.6 5.3 2.1 8.0 0.6 2.0 1 1 1 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) CEP209_CC5 PF16574.5 gi|332796701|ref|YP_004458201.1| - 2.8 8.1 5.8 11 6.3 2.2 2.6 1 1 2 3 3 3 0 Coiled-coil region of centrosome protein CE290 DUF4094 PF13334.6 gi|332796701|ref|YP_004458201.1| - 3 8.3 8.5 1.1e+02 3.3 0.4 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4094) Shugoshin_N PF07558.11 gi|332796701|ref|YP_004458201.1| - 4 7.4 23.9 2 8.3 0.2 4.4 3 1 1 4 4 4 0 Shugoshin N-terminal coiled-coil region PRKG1_interact PF15898.5 gi|332796701|ref|YP_004458201.1| - 5.5 7.9 6.5 13 6.8 3.0 2.2 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain GLTP PF08718.11 gi|332796701|ref|YP_004458201.1| - 7 6.9 6.8 5.4 7.3 4.0 1.9 1 1 1 2 2 2 0 Glycolipid transfer protein (GLTP) YabA PF06156.13 gi|332796701|ref|YP_004458201.1| - 7.7 7.2 12.0 16 6.2 3.8 2.9 1 1 1 2 2 2 0 Initiation control protein YabA HIP1_clath_bdg PF16515.5 gi|332796701|ref|YP_004458201.1| - 8.1 7.1 12.0 5.9 7.6 2.9 2.4 1 1 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 Ion_trans_2 PF07885.16 gi|332796702|ref|YP_004458202.1| - 2e-17 62.9 8.2 3.5e-17 62.1 8.2 1.4 1 0 0 1 1 1 1 Ion channel TrkA_N PF02254.18 gi|332796702|ref|YP_004458202.1| - 5.2e-12 46.0 0.6 9.2e-12 45.2 0.6 1.4 1 0 0 1 1 1 1 TrkA-N domain Ion_trans PF00520.31 gi|332796702|ref|YP_004458202.1| - 8.2e-05 21.9 5.5 0.00029 20.1 4.8 1.9 2 0 0 2 2 2 1 Ion transport protein LapA_dom PF06305.11 gi|332796702|ref|YP_004458202.1| - 0.0066 16.2 0.2 0.0066 16.2 0.2 2.1 2 0 0 2 2 2 1 Lipopolysaccharide assembly protein A domain GARS_N PF02844.15 gi|332796702|ref|YP_004458202.1| - 0.045 14.5 0.3 0.23 12.3 0.3 2.0 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain Synaptonemal_3 PF15191.6 gi|332796702|ref|YP_004458202.1| - 0.061 13.1 1.3 0.49 10.2 0.1 2.5 2 0 0 2 2 2 0 Synaptonemal complex central element protein 3 NAD_binding_7 PF13241.6 gi|332796702|ref|YP_004458202.1| - 0.11 13.0 0.1 0.25 11.8 0.1 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding ABC2_membrane PF01061.24 gi|332796703|ref|YP_004458203.1| - 6.3e-24 84.6 21.7 6.3e-24 84.6 21.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|332796703|ref|YP_004458203.1| - 4.8e-14 52.2 23.9 4.8e-14 52.2 23.9 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein CcmB PF03379.13 gi|332796703|ref|YP_004458203.1| - 0.00032 20.3 3.8 0.00054 19.5 3.8 1.3 1 0 0 1 1 1 1 CcmB protein ABC2_membrane_2 PF12679.7 gi|332796703|ref|YP_004458203.1| - 0.015 14.6 15.5 0.029 13.6 15.5 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332796704|ref|YP_004458204.1| - 5.5e-30 104.7 0.1 1.3e-29 103.4 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|332796704|ref|YP_004458204.1| - 2.1e-12 47.5 0.3 5.1e-07 29.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|332796704|ref|YP_004458204.1| - 6.4e-07 30.0 1.5 6.4e-07 30.0 1.5 2.1 3 1 0 3 3 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|332796704|ref|YP_004458204.1| - 0.0026 17.2 0.0 0.43 10.0 0.0 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|332796704|ref|YP_004458204.1| - 0.023 15.2 0.2 0.023 15.2 0.2 2.3 2 1 1 3 3 3 0 AAA domain AAA PF00004.29 gi|332796704|ref|YP_004458204.1| - 0.041 14.3 3.1 0.77 10.2 3.1 2.6 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|332796704|ref|YP_004458204.1| - 0.066 13.1 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_22 PF13401.6 gi|332796704|ref|YP_004458204.1| - 0.1 12.9 0.6 0.4 10.9 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|332796704|ref|YP_004458204.1| - 0.11 12.3 0.1 0.24 11.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|332796704|ref|YP_004458204.1| - 0.11 12.0 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332796704|ref|YP_004458204.1| - 0.12 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|332796704|ref|YP_004458204.1| - 0.16 11.7 7.1 3.6 7.2 7.1 2.9 1 1 0 1 1 1 0 AAA ATPase domain PALP PF00291.25 gi|332796706|ref|YP_004458206.1| - 3e-38 131.9 0.0 3.6e-38 131.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme RVP PF00077.20 gi|332796708|ref|YP_004458208.1| - 0.0071 16.6 0.0 0.0098 16.2 0.0 1.3 1 1 0 1 1 1 1 Retroviral aspartyl protease gag-asp_proteas PF13975.6 gi|332796708|ref|YP_004458208.1| - 0.035 14.7 0.0 0.039 14.5 0.0 1.3 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|332796708|ref|YP_004458208.1| - 0.057 14.1 0.0 0.084 13.5 0.0 1.3 1 0 0 1 1 1 0 Aspartyl protease BTHB PF18410.1 gi|332796709|ref|YP_004458209.1| - 0.024 14.5 0.5 0.028 14.2 0.5 1.3 1 1 0 1 1 1 0 Basic tilted helix bundle domain Beta_protein PF14350.6 gi|332796709|ref|YP_004458209.1| - 0.035 13.5 0.0 0.037 13.5 0.0 1.0 1 0 0 1 1 1 0 Beta protein SF3A3 PF16837.5 gi|332796709|ref|YP_004458209.1| - 0.059 13.9 0.1 0.061 13.8 0.1 1.1 1 0 0 1 1 1 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 PQQ PF01011.21 gi|332796710|ref|YP_004458210.1| - 3.5e-31 105.6 6.4 5.1e-05 23.0 0.0 7.5 7 0 0 7 7 7 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|332796710|ref|YP_004458210.1| - 4.4e-20 72.3 0.0 7.8e-14 51.8 0.0 2.4 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|332796710|ref|YP_004458210.1| - 2.9e-16 59.4 0.0 0.0029 18.0 0.0 7.2 6 3 1 7 7 7 3 PQQ-like domain Sigma_reg_N PF13800.6 gi|332796710|ref|YP_004458210.1| - 0.018 15.3 1.2 0.045 14.0 1.2 1.7 1 0 0 1 1 1 0 Sigma factor regulator N-terminal 12TM_1 PF09847.9 gi|332796710|ref|YP_004458210.1| - 0.046 12.8 4.4 0.08 12.0 4.4 1.4 1 0 0 1 1 1 0 Membrane protein of 12 TMs Alpha-amylase PF00128.24 gi|332796711|ref|YP_004458211.1| - 2e-29 103.2 1.8 3.5e-27 95.9 0.6 2.7 2 1 0 2 2 2 2 Alpha amylase, catalytic domain CBM_48 PF02922.18 gi|332796712|ref|YP_004458212.1| - 4.4e-16 59.0 0.0 8.9e-16 58.0 0.0 1.6 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Alpha-amylase PF00128.24 gi|332796712|ref|YP_004458212.1| - 6.7e-15 55.5 0.0 1.6e-11 44.4 0.0 3.1 1 1 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase PF00128.24 gi|332796713|ref|YP_004458213.1| - 1.7e-32 113.4 0.2 1.2e-23 84.2 0.1 3.0 1 1 1 2 2 2 2 Alpha amylase, catalytic domain CBM_48 PF02922.18 gi|332796713|ref|YP_004458213.1| - 1.2e-08 35.2 0.0 2.8e-08 34.0 0.0 1.6 1 0 0 1 1 1 1 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) hDGE_amylase PF14701.6 gi|332796713|ref|YP_004458213.1| - 0.0081 15.3 0.0 0.32 10.0 0.0 2.2 1 1 1 2 2 2 2 Glycogen debranching enzyme, glucanotransferase domain Alpha-amyl_C PF09071.10 gi|332796713|ref|YP_004458213.1| - 0.029 14.2 0.1 0.096 12.6 0.1 2.0 2 0 0 2 2 2 0 Alpha-amylase, C terminal nsp9 PF08710.10 gi|332796714|ref|YP_004458214.1| - 0.056 13.8 0.0 0.099 13.0 0.0 1.4 1 0 0 1 1 1 0 nsp9 replicase CDC37_C PF08564.10 gi|332796714|ref|YP_004458214.1| - 0.44 10.7 3.4 0.27 11.4 1.1 1.7 2 0 0 2 2 2 0 Cdc37 C terminal domain LDcluster4 PF18306.1 gi|332796715|ref|YP_004458215.1| - 7.9e-15 54.8 0.0 1e-14 54.4 0.0 1.1 1 0 0 1 1 1 1 SLOG cluster4 family B5 PF03484.15 gi|332796715|ref|YP_004458215.1| - 0.034 14.5 0.0 0.089 13.1 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetase B5 domain Peptidase_M48 PF01435.18 gi|332796716|ref|YP_004458216.1| - 2.1e-21 76.6 0.0 4.3e-21 75.6 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|332796716|ref|YP_004458216.1| - 0.00049 19.4 3.9 0.00086 18.6 3.7 1.7 1 1 0 1 1 1 1 BlaR1 peptidase M56 DUF4870 PF09685.10 gi|332796716|ref|YP_004458216.1| - 4.4 7.4 14.4 5.2 7.2 1.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4870) Pyridox_oxase_2 PF12766.7 gi|332796717|ref|YP_004458217.1| - 0.052 14.2 0.0 0.063 13.9 0.0 1.1 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Pro_racemase PF05544.11 gi|332796718|ref|YP_004458218.1| - 0.037 13.1 0.1 0.048 12.7 0.1 1.1 1 0 0 1 1 1 0 Proline racemase CbiQ PF02361.16 gi|332796719|ref|YP_004458219.1| - 4.3e-08 33.1 21.2 4.3e-08 33.1 21.2 1.8 1 1 1 2 2 2 1 Cobalt transport protein MFS_1 PF07690.16 gi|332796720|ref|YP_004458220.1| - 1.6e-41 142.5 80.2 5.1e-37 127.6 49.9 3.4 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332796720|ref|YP_004458220.1| - 4.6e-07 28.6 5.7 1.3e-06 27.2 5.7 1.7 1 0 0 1 1 1 1 Transmembrane secretion effector Sugar_tr PF00083.24 gi|332796720|ref|YP_004458220.1| - 1.2e-05 24.4 31.2 0.00093 18.2 18.3 2.5 2 1 0 2 2 2 2 Sugar (and other) transporter PUCC PF03209.15 gi|332796720|ref|YP_004458220.1| - 0.00016 20.9 1.5 0.00016 20.9 1.5 2.8 2 1 0 2 2 2 1 PUCC protein DUF2583 PF10762.9 gi|332796720|ref|YP_004458220.1| - 0.088 13.2 3.7 0.54 10.7 0.5 3.7 2 1 1 3 3 3 0 Protein of unknown function (DUF2583) Phage_holin_5_1 PF06946.11 gi|332796720|ref|YP_004458220.1| - 8.7 6.8 8.9 3.4 8.1 3.4 3.0 2 1 1 3 3 3 0 Bacteriophage A118-like holin, Hol118 MarR PF01047.22 gi|332796721|ref|YP_004458221.1| - 1.3e-13 50.6 0.0 2.9e-13 49.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|332796721|ref|YP_004458221.1| - 4.4e-12 46.3 0.1 7.4e-12 45.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|332796721|ref|YP_004458221.1| - 3.7e-09 36.4 0.0 5.6e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|332796721|ref|YP_004458221.1| - 1.1e-05 25.2 0.4 2e-05 24.4 0.4 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|332796721|ref|YP_004458221.1| - 3.3e-05 24.0 0.1 9.8e-05 22.5 0.1 1.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|332796721|ref|YP_004458221.1| - 0.00013 21.8 0.0 0.00026 20.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|332796721|ref|YP_004458221.1| - 0.00058 19.6 0.0 0.0012 18.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|332796721|ref|YP_004458221.1| - 0.00088 19.2 0.1 0.0018 18.2 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PadR PF03551.14 gi|332796721|ref|YP_004458221.1| - 0.0011 18.9 0.0 0.0025 17.7 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family GntR PF00392.21 gi|332796721|ref|YP_004458221.1| - 0.0039 16.8 0.0 0.0086 15.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_45 PF14947.6 gi|332796721|ref|YP_004458221.1| - 0.0059 16.6 0.2 0.011 15.8 0.2 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|332796721|ref|YP_004458221.1| - 0.0091 16.3 0.0 0.016 15.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator RTP PF02334.16 gi|332796721|ref|YP_004458221.1| - 0.01 16.5 0.6 0.028 15.1 0.2 1.7 1 1 1 2 2 2 0 Replication terminator protein Fe_dep_repress PF01325.19 gi|332796721|ref|YP_004458221.1| - 0.011 15.9 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HxlR PF01638.17 gi|332796721|ref|YP_004458221.1| - 0.012 15.5 0.2 0.012 15.5 0.2 1.4 2 0 0 2 2 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|332796721|ref|YP_004458221.1| - 0.012 15.2 0.0 0.075 12.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF4423 PF14394.6 gi|332796721|ref|YP_004458221.1| - 0.016 15.0 0.1 0.031 14.0 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) HTH_CodY PF08222.11 gi|332796721|ref|YP_004458221.1| - 0.024 14.2 0.2 0.04 13.5 0.2 1.5 1 0 0 1 1 1 0 CodY helix-turn-helix domain TBPIP PF07106.13 gi|332796721|ref|YP_004458221.1| - 0.032 14.1 0.1 0.13 12.2 0.0 2.0 2 0 0 2 2 2 0 TBPIP/Hop2 winged helix domain HTH_29 PF13551.6 gi|332796721|ref|YP_004458221.1| - 0.046 13.7 0.0 0.17 12.0 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Glyco_transf_88 PF16849.5 gi|332796721|ref|YP_004458221.1| - 0.056 12.4 0.2 0.06 12.3 0.2 1.1 1 0 0 1 1 1 0 Glycosyltransferase family 88 HTH_36 PF13730.6 gi|332796721|ref|YP_004458221.1| - 0.064 13.2 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MFS_1 PF07690.16 gi|332796722|ref|YP_004458222.1| - 7.3e-33 113.9 46.6 2.2e-22 79.5 39.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332796722|ref|YP_004458222.1| - 0.89 7.9 7.3 0.13 10.6 0.8 2.1 2 0 0 2 2 2 0 Transmembrane secretion effector Ldh_2 PF02615.14 gi|332796723|ref|YP_004458223.1| - 9.1e-76 255.2 0.0 1.1e-75 254.9 0.0 1.1 1 0 0 1 1 1 1 Malate/L-lactate dehydrogenase AA_permease_2 PF13520.6 gi|332796724|ref|YP_004458224.1| - 5.9e-24 84.7 61.7 8.4e-24 84.2 61.2 1.4 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|332796724|ref|YP_004458224.1| - 1.1e-15 57.2 58.5 3.1e-15 55.7 58.5 1.6 1 1 0 1 1 1 1 Amino acid permease Herpes_HEPA PF03324.14 gi|332796724|ref|YP_004458224.1| - 0.015 15.7 1.2 0.23 11.9 0.3 3.0 2 1 1 3 3 3 0 Herpesvirus DNA helicase/primase complex associated protein Adeno_E3_CR2 PF02439.15 gi|332796724|ref|YP_004458224.1| - 0.09 12.6 1.4 1.2 9.0 0.1 3.2 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 Fer4 PF00037.27 gi|332796725|ref|YP_004458225.1| - 3.6e-14 51.9 13.8 3.4e-07 29.8 6.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332796725|ref|YP_004458225.1| - 2.3e-11 44.1 26.8 2.7e-07 31.1 9.3 1.8 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332796725|ref|YP_004458225.1| - 7.3e-10 38.8 18.4 5.7e-08 32.8 7.4 1.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332796725|ref|YP_004458225.1| - 4.8e-09 36.2 5.9 6.8e-09 35.8 5.9 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332796725|ref|YP_004458225.1| - 9.5e-08 31.8 13.6 0.00025 21.0 5.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332796725|ref|YP_004458225.1| - 2.3e-07 30.8 6.4 3.5e-07 30.2 6.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332796725|ref|YP_004458225.1| - 3.5e-05 23.6 10.5 0.022 14.9 3.8 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|332796725|ref|YP_004458225.1| - 5.2e-05 23.7 10.2 0.033 14.7 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|332796725|ref|YP_004458225.1| - 5.2e-05 24.1 8.8 0.0082 17.1 3.1 2.2 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|332796725|ref|YP_004458225.1| - 7e-05 23.3 0.9 0.31 11.6 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332796725|ref|YP_004458225.1| - 7.7e-05 23.1 7.5 0.0027 18.1 8.5 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|332796725|ref|YP_004458225.1| - 0.00022 21.9 13.7 0.012 16.5 6.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|332796725|ref|YP_004458225.1| - 0.00046 20.5 8.8 0.045 14.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|332796725|ref|YP_004458225.1| - 0.00059 19.9 0.8 0.00067 19.8 0.8 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_18 PF13746.6 gi|332796725|ref|YP_004458225.1| - 0.0084 16.3 9.6 0.022 14.9 2.8 2.1 1 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332796725|ref|YP_004458225.1| - 0.016 15.9 11.0 0.32 11.7 0.2 2.8 2 1 0 2 2 2 0 4Fe-4S single cluster domain DUF2761 PF10959.8 gi|332796725|ref|YP_004458225.1| - 0.026 14.5 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2761) Fer4_22 PF17179.4 gi|332796725|ref|YP_004458225.1| - 1.9 9.4 8.0 9.4 7.2 2.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Rubrerythrin PF02915.17 gi|332796726|ref|YP_004458226.1| - 6.1e-29 101.2 1.2 9.2e-29 100.6 1.2 1.3 1 0 0 1 1 1 1 Rubrerythrin Ferritin PF00210.24 gi|332796726|ref|YP_004458226.1| - 6.7e-09 35.8 0.9 1.3e-07 31.6 0.9 2.0 1 1 0 1 1 1 1 Ferritin-like domain FA_desaturase_2 PF03405.14 gi|332796726|ref|YP_004458226.1| - 0.0041 16.0 0.1 0.4 9.5 0.0 2.0 1 1 1 2 2 2 2 Fatty acid desaturase DUF2202 PF09968.9 gi|332796726|ref|YP_004458226.1| - 0.079 12.8 0.0 11 5.8 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized protein domain (DUF2202) DUF3501 PF12007.8 gi|332796727|ref|YP_004458227.1| - 5.4e-57 192.8 3.8 6.1e-57 192.6 3.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3501) RVP PF00077.20 gi|332796729|ref|YP_004458229.1| - 0.042 14.1 0.0 0.063 13.6 0.0 1.3 1 1 0 1 1 1 0 Retroviral aspartyl protease Asp_protease_2 PF13650.6 gi|332796729|ref|YP_004458229.1| - 0.078 13.6 0.0 0.14 12.9 0.0 1.4 1 1 0 1 1 1 0 Aspartyl protease Asp_protease PF09668.10 gi|332796729|ref|YP_004458229.1| - 0.12 12.2 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Aspartyl protease DUF929 PF06053.11 gi|332796730|ref|YP_004458230.1| - 5.6e-63 212.5 9.2 6.6e-63 212.3 9.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF929) NADH_B2 PF14813.6 gi|332796730|ref|YP_004458230.1| - 0.093 12.5 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 NADH dehydrogenase 1 beta subcomplex subunit 2 AhpC-TSA PF00578.21 gi|332796731|ref|YP_004458231.1| - 8.1e-33 113.0 0.0 1.2e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|332796731|ref|YP_004458231.1| - 6.2e-18 64.9 0.0 8.8e-18 64.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|332796731|ref|YP_004458231.1| - 2.8e-09 36.7 0.0 6.2e-09 35.6 0.0 1.6 1 0 0 1 1 1 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|332796731|ref|YP_004458231.1| - 0.087 12.9 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 AhpC/TSA antioxidant enzyme Glyco_tranf_2_3 PF13641.6 gi|332796733|ref|YP_004458233.1| - 2e-37 129.3 0.0 2.7e-37 128.8 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|332796733|ref|YP_004458233.1| - 6.5e-29 101.3 0.3 1e-28 100.6 0.3 1.4 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|332796733|ref|YP_004458233.1| - 1.3e-28 99.9 0.0 1.8e-28 99.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|332796733|ref|YP_004458233.1| - 3.5e-15 55.9 0.0 6.4e-15 55.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|332796733|ref|YP_004458233.1| - 2.2e-09 37.2 0.1 2.3e-08 33.8 0.1 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|332796733|ref|YP_004458233.1| - 0.0022 18.4 0.0 0.004 17.6 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 PDDEXK_1 PF12705.7 gi|332796734|ref|YP_004458234.1| - 5.4e-09 36.3 1.2 7.8e-08 32.5 1.2 2.3 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|332796734|ref|YP_004458234.1| - 8.3e-09 35.7 0.0 1e-08 35.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_3 PF13366.6 gi|332796734|ref|YP_004458234.1| - 5.9e-06 26.6 0.0 8e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily PDDEXK_9 PF08011.11 gi|332796734|ref|YP_004458234.1| - 0.0079 16.1 0.1 0.016 15.1 0.1 1.6 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily HSDR_N_2 PF13588.6 gi|332796734|ref|YP_004458234.1| - 0.019 15.0 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) AHJR-like PF18743.1 gi|332796734|ref|YP_004458234.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 REase_AHJR-like Mrr_cat PF04471.12 gi|332796734|ref|YP_004458234.1| - 0.033 14.2 0.0 0.04 13.9 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease PTS_EIIA_1 PF00358.20 gi|332796734|ref|YP_004458234.1| - 0.046 13.5 0.2 0.067 13.0 0.2 1.2 1 0 0 1 1 1 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SfsA PF03749.13 gi|332796734|ref|YP_004458234.1| - 0.061 13.2 0.2 0.31 10.9 0.2 1.9 1 1 0 1 1 1 0 Sugar fermentation stimulation protein RE domain Phos_pyr_kin PF08543.12 gi|332796735|ref|YP_004458235.1| - 6.2e-83 277.9 0.3 8.3e-83 277.5 0.3 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|332796735|ref|YP_004458235.1| - 4.3e-15 55.8 0.3 8.3e-15 54.9 0.3 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|332796735|ref|YP_004458235.1| - 8.1e-08 32.0 0.1 1.4e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Carbohydrate kinase T4_Gp59_C PF08994.10 gi|332796735|ref|YP_004458235.1| - 0.051 14.2 0.0 0.15 12.7 0.0 1.8 1 0 0 1 1 1 0 T4 gene Gp59 loader of gp41 DNA helicase C-term OmpH PF03938.14 gi|332796735|ref|YP_004458235.1| - 0.2 12.0 0.2 0.2 12.0 0.2 2.0 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) PfkB PF00294.24 gi|332796736|ref|YP_004458236.1| - 1.4e-58 198.6 0.3 2.1e-58 198.0 0.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|332796736|ref|YP_004458236.1| - 7.4e-10 38.6 0.0 1.2e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Carb_kinase PF01256.17 gi|332796736|ref|YP_004458236.1| - 0.00059 19.4 0.0 0.00096 18.7 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase Hist_deacetyl PF00850.19 gi|332796737|ref|YP_004458237.1| - 3.7e-57 194.1 0.0 6.9e-57 193.2 0.0 1.4 1 1 0 1 1 1 1 Histone deacetylase domain OrfB_Zn_ribbon PF07282.11 gi|332796738|ref|YP_004458238.1| - 4.1e-20 71.5 0.0 6.4e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|332796738|ref|YP_004458238.1| - 0.024 14.6 0.6 0.042 13.9 0.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|332796738|ref|YP_004458238.1| - 0.032 14.0 2.2 4.7 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RuvC_1 PF18516.1 gi|332796738|ref|YP_004458238.1| - 0.076 12.2 0.0 5.3 6.2 0.0 2.2 1 1 0 2 2 2 0 RuvC nuclease domain OrfB_IS605 PF01385.19 gi|332796738|ref|YP_004458238.1| - 0.1 12.9 0.0 0.16 12.2 0.0 1.4 1 0 0 1 1 1 0 Probable transposase zf-NADH-PPase PF09297.11 gi|332796738|ref|YP_004458238.1| - 0.13 11.9 0.5 18 5.1 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain NRDD PF13597.6 gi|332796738|ref|YP_004458238.1| - 0.14 11.0 0.5 0.22 10.3 0.5 1.2 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|332796738|ref|YP_004458238.1| - 0.22 11.3 4.0 1.3 8.8 4.5 1.9 1 1 1 2 2 2 0 Rubredoxin metal binding domain zf-ribbon_3 PF13248.6 gi|332796738|ref|YP_004458238.1| - 0.3 10.6 2.7 3.2 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|332796738|ref|YP_004458238.1| - 0.41 10.2 3.2 8.3 6.0 0.4 2.4 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.9 gi|332796738|ref|YP_004458238.1| - 1 9.5 4.1 17 5.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|332796738|ref|YP_004458238.1| - 4.1 7.4 5.9 3.2 7.8 1.0 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain GATase_4 PF13230.6 gi|332796739|ref|YP_004458239.1| - 0.0002 20.4 0.0 0.00026 20.0 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|332796739|ref|YP_004458239.1| - 0.03 14.5 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferase domain Lactamase_B_2 PF12706.7 gi|332796740|ref|YP_004458240.1| - 1.9e-05 24.3 0.0 2e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|332796740|ref|YP_004458240.1| - 0.033 14.2 0.1 0.13 12.3 0.0 1.8 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily Peptidase_M24 PF00557.24 gi|332796741|ref|YP_004458241.1| - 1.2e-60 204.8 0.1 1.7e-60 204.3 0.1 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|332796741|ref|YP_004458241.1| - 9.7e-16 58.6 0.0 1.9e-15 57.7 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Aminotran_1_2 PF00155.21 gi|332796742|ref|YP_004458242.1| - 3.3e-29 102.2 0.0 3.7e-29 102.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_MocR PF12897.7 gi|332796742|ref|YP_004458242.1| - 3.4e-09 36.0 0.0 9.1e-09 34.6 0.0 1.6 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|332796742|ref|YP_004458242.1| - 0.023 13.4 0.0 0.031 12.9 0.0 1.1 1 0 0 1 1 1 0 Aminotransferase class-III TFA2_Winged_2 PF18121.1 gi|332796742|ref|YP_004458242.1| - 0.025 14.3 0.5 0.16 11.6 0.0 2.7 3 0 0 3 3 3 0 TFA2 Winged helix domain 2 RNase_P_p30 PF01876.16 gi|332796742|ref|YP_004458242.1| - 0.13 11.7 0.0 0.83 9.1 0.0 2.1 2 0 0 2 2 2 0 RNase P subunit p30 OCD_Mu_crystall PF02423.15 gi|332796743|ref|YP_004458243.1| - 1.4e-39 135.9 0.5 2.1e-39 135.4 0.5 1.4 1 1 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|332796743|ref|YP_004458243.1| - 2.3e-05 24.5 0.1 5e-05 23.4 0.1 1.6 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|332796743|ref|YP_004458243.1| - 0.00029 21.3 0.6 0.0066 17.0 0.2 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent DUF2007 PF09413.10 gi|332796743|ref|YP_004458243.1| - 0.039 14.1 0.0 13 6.1 0.0 3.3 3 0 0 3 3 3 0 Putative prokaryotic signal transducing protein HTH_24 PF13412.6 gi|332796744|ref|YP_004458244.1| - 1.2e-06 28.0 0.0 2.3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|332796744|ref|YP_004458244.1| - 9.9e-06 25.4 1.6 1.6e-05 24.8 0.1 2.0 2 1 0 2 2 2 1 HTH domain HTH_DeoR PF08220.12 gi|332796744|ref|YP_004458244.1| - 0.00051 19.7 0.0 0.00096 18.9 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|332796744|ref|YP_004458244.1| - 0.0011 18.9 0.0 0.0017 18.2 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|332796744|ref|YP_004458244.1| - 0.0011 19.1 0.0 0.0021 18.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoC PF09012.10 gi|332796744|ref|YP_004458244.1| - 0.0014 18.6 0.0 0.0022 18.0 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_Mga PF08280.11 gi|332796744|ref|YP_004458244.1| - 0.0016 18.4 0.1 0.0041 17.1 0.0 1.7 2 0 0 2 2 1 1 M protein trans-acting positive regulator (MGA) HTH domain TrmB PF01978.19 gi|332796744|ref|YP_004458244.1| - 0.0027 17.6 0.3 0.0065 16.3 0.1 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|332796744|ref|YP_004458244.1| - 0.0067 16.2 0.0 0.0092 15.8 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|332796744|ref|YP_004458244.1| - 0.0081 16.1 0.2 0.07 13.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|332796744|ref|YP_004458244.1| - 0.0081 16.0 0.0 0.012 15.5 0.0 1.2 1 0 0 1 1 1 1 MarR family Cep57_MT_bd PF06657.13 gi|332796744|ref|YP_004458244.1| - 0.013 15.9 0.4 0.028 14.9 0.4 1.5 1 0 0 1 1 1 0 Centrosome microtubule-binding domain of Cep57 DUF4618 PF15397.6 gi|332796744|ref|YP_004458244.1| - 0.017 14.6 6.5 0.28 10.6 4.6 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Bacillus_HBL PF05791.11 gi|332796744|ref|YP_004458244.1| - 0.019 14.8 1.5 0.023 14.5 1.5 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) DUF4423 PF14394.6 gi|332796744|ref|YP_004458244.1| - 0.033 13.9 4.6 0.26 11.0 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4423) CheY-binding PF09078.11 gi|332796744|ref|YP_004458244.1| - 0.038 14.1 0.7 3.6 7.8 0.1 2.3 2 0 0 2 2 2 0 CheY binding TolA_bind_tri PF16331.5 gi|332796744|ref|YP_004458244.1| - 0.043 13.9 0.1 0.072 13.2 0.1 1.4 1 0 0 1 1 1 0 TolA binding protein trimerisation Shugoshin_N PF07558.11 gi|332796744|ref|YP_004458244.1| - 0.044 13.7 2.3 0.044 13.7 2.3 1.9 2 0 0 2 2 1 0 Shugoshin N-terminal coiled-coil region DivIC PF04977.15 gi|332796744|ref|YP_004458244.1| - 0.045 13.5 2.1 0.045 13.5 2.1 2.1 1 1 0 2 2 2 0 Septum formation initiator Nup54_57_C PF18570.1 gi|332796744|ref|YP_004458244.1| - 0.056 13.0 2.1 0.12 12.0 2.1 1.6 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain Rrf2 PF02082.20 gi|332796744|ref|YP_004458244.1| - 0.06 13.7 0.6 0.16 12.4 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator SlyX PF04102.12 gi|332796744|ref|YP_004458244.1| - 0.08 13.6 0.2 0.16 12.6 0.2 1.5 1 0 0 1 1 1 0 SlyX DUF641 PF04859.12 gi|332796744|ref|YP_004458244.1| - 0.08 13.3 3.5 0.095 13.0 3.4 1.3 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) HTH_27 PF13463.6 gi|332796744|ref|YP_004458244.1| - 0.096 13.2 0.1 0.47 11.0 0.1 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain ZapB PF06005.12 gi|332796744|ref|YP_004458244.1| - 0.13 12.8 5.7 0.74 10.3 1.4 2.2 1 1 1 2 2 2 0 Cell division protein ZapB Prefoldin_2 PF01920.20 gi|332796744|ref|YP_004458244.1| - 0.17 11.9 8.2 0.043 13.8 5.2 1.5 2 0 0 2 2 2 0 Prefoldin subunit TSC22 PF01166.18 gi|332796744|ref|YP_004458244.1| - 0.18 12.2 0.8 0.18 12.2 0.8 2.4 1 1 2 3 3 3 0 TSC-22/dip/bun family Cnn_1N PF07989.11 gi|332796744|ref|YP_004458244.1| - 0.18 12.0 9.8 0.4 10.9 2.0 2.6 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 FAM76 PF16046.5 gi|332796744|ref|YP_004458244.1| - 0.2 11.0 2.4 0.21 10.9 2.4 1.1 1 0 0 1 1 1 0 FAM76 protein Fib_alpha PF08702.10 gi|332796744|ref|YP_004458244.1| - 0.2 11.8 4.9 0.28 11.4 4.9 1.3 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family bZIP_1 PF00170.21 gi|332796744|ref|YP_004458244.1| - 0.74 10.0 6.6 0.63 10.2 3.9 2.1 1 1 1 2 2 2 0 bZIP transcription factor DUF5595 PF18077.1 gi|332796744|ref|YP_004458244.1| - 0.93 9.6 6.2 3.6 7.7 6.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF5595) HALZ PF02183.18 gi|332796744|ref|YP_004458244.1| - 1.4 9.2 6.2 0.14 12.4 1.6 1.8 2 1 0 2 2 1 0 Homeobox associated leucine zipper Glycos_transf_2 PF00535.26 gi|332796745|ref|YP_004458245.1| - 1.4e-21 77.0 0.0 1.8e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|332796745|ref|YP_004458245.1| - 0.0036 17.2 0.0 0.013 15.4 0.0 1.7 1 1 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|332796745|ref|YP_004458245.1| - 0.044 14.3 0.0 0.089 13.3 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Amidohydro_1 PF01979.20 gi|332796745|ref|YP_004458245.1| - 0.11 11.8 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Amidohydrolase family Glyco_transf_21 PF13506.6 gi|332796745|ref|YP_004458245.1| - 0.12 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 21 NTP_transf_3 PF12804.7 gi|332796745|ref|YP_004458245.1| - 0.15 12.4 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 MobA-like NTP transferase domain DUF1947 PF09183.10 gi|332796746|ref|YP_004458246.1| - 3.7e-25 88.0 1.8 7.4e-25 87.0 1.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1947) PUA PF01472.20 gi|332796746|ref|YP_004458246.1| - 2.5e-17 62.6 0.2 3.6e-17 62.1 0.2 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|332796746|ref|YP_004458246.1| - 0.0015 18.7 0.1 0.0023 18.2 0.1 1.3 1 0 0 1 1 1 1 UPF0113 PUA domain KilA-N PF04383.13 gi|332796746|ref|YP_004458246.1| - 0.055 13.3 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 KilA-N domain Pre-PUA PF17832.1 gi|332796746|ref|YP_004458246.1| - 0.076 13.7 0.1 0.16 12.7 0.1 1.5 1 0 0 1 1 1 0 Pre-PUA-like domain Ald_Xan_dh_C2 PF02738.18 gi|332796747|ref|YP_004458247.1| - 1.4e-155 518.9 0.0 1.7e-155 518.6 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|332796747|ref|YP_004458247.1| - 5.2e-17 62.2 0.0 1.3e-14 54.5 0.0 2.5 1 1 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Peptidase_M48 PF01435.18 gi|332796748|ref|YP_004458248.1| - 1.9e-20 73.5 3.4 2e-19 70.1 3.4 2.4 1 1 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.9 gi|332796748|ref|YP_004458248.1| - 0.0063 16.1 0.1 0.015 14.9 0.1 1.6 2 0 0 2 2 2 1 Predicted Zn-dependent protease (DUF2268) Peptidase_M56 PF05569.11 gi|332796748|ref|YP_004458248.1| - 0.013 14.8 2.7 0.025 13.8 2.7 1.6 1 1 0 1 1 1 0 BlaR1 peptidase M56 ADH_zinc_N PF00107.26 gi|332796749|ref|YP_004458249.1| - 5.4e-27 94.3 0.1 8e-27 93.8 0.1 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|332796749|ref|YP_004458249.1| - 3.7e-26 91.1 0.3 7.4e-25 87.0 0.1 2.2 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain Glu_dehyd_C PF16912.5 gi|332796749|ref|YP_004458249.1| - 3.8e-14 52.7 0.3 5.6e-14 52.1 0.3 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|332796749|ref|YP_004458249.1| - 1.5e-06 29.3 0.0 2.7e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase CoA_binding PF02629.19 gi|332796749|ref|YP_004458249.1| - 0.047 14.4 0.3 0.15 12.7 0.2 1.9 1 1 1 2 2 2 0 CoA binding domain AlaDh_PNT_C PF01262.21 gi|332796749|ref|YP_004458249.1| - 0.12 11.6 0.6 0.24 10.7 0.6 1.6 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|332796749|ref|YP_004458249.1| - 0.15 12.8 0.0 0.34 11.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain CobD_Cbib PF03186.13 gi|332796750|ref|YP_004458250.1| - 2.4e-72 243.5 0.0 3e-72 243.1 0.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein CobS PF02654.15 gi|332796751|ref|YP_004458251.1| - 3.7e-30 105.7 5.1 4.2e-30 105.5 5.1 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase TadE PF07811.12 gi|332796751|ref|YP_004458251.1| - 0.096 13.0 0.0 0.096 13.0 0.0 3.3 3 0 0 3 3 3 0 TadE-like protein GATase_3 PF07685.14 gi|332796752|ref|YP_004458252.1| - 1.5e-38 132.4 0.0 2.1e-38 131.9 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|332796752|ref|YP_004458252.1| - 5.2e-10 39.5 0.0 9.8e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|332796752|ref|YP_004458252.1| - 5.6e-07 29.6 0.0 4.3e-06 26.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain GATase PF00117.28 gi|332796752|ref|YP_004458252.1| - 0.06 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I GMP_synt_C PF00958.22 gi|332796753|ref|YP_004458253.1| - 7.8e-22 77.1 4.7 3.6e-19 68.6 0.3 3.3 2 1 2 4 4 4 2 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|332796753|ref|YP_004458253.1| - 1e-11 44.4 0.1 6.1e-11 41.9 0.1 2.0 1 1 0 1 1 1 1 NAD synthase ATP_bind_3 PF01171.20 gi|332796753|ref|YP_004458253.1| - 2e-07 31.0 0.0 3.3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 PP-loop family QueC PF06508.13 gi|332796753|ref|YP_004458253.1| - 5.8e-05 22.7 0.0 0.0045 16.5 0.0 2.3 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|332796753|ref|YP_004458253.1| - 8.4e-05 22.2 0.1 0.002 17.8 0.0 2.7 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|332796753|ref|YP_004458253.1| - 0.00038 19.3 0.0 0.051 12.4 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Peptidase_M48 PF01435.18 gi|332796754|ref|YP_004458254.1| - 7e-30 104.3 0.0 1.6e-29 103.1 0.0 1.5 2 0 0 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|332796754|ref|YP_004458254.1| - 0.00047 19.4 0.0 0.004 16.4 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Pox_A14 PF05767.12 gi|332796754|ref|YP_004458254.1| - 0.88 9.8 5.8 5.3 7.3 0.0 2.4 2 0 0 2 2 2 0 Poxvirus virion envelope protein A14 DUF4191 PF13829.6 gi|332796754|ref|YP_004458254.1| - 1.1 8.5 3.9 0.85 8.9 1.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) CBS PF00571.28 gi|332796755|ref|YP_004458255.1| - 6.6e-32 109.8 3.6 2.7e-16 59.7 0.2 2.0 2 0 0 2 2 2 2 CBS domain 4HB_MCP_1 PF12729.7 gi|332796755|ref|YP_004458255.1| - 0.028 13.9 1.6 2.3 7.7 0.0 2.6 2 1 1 3 3 3 0 Four helix bundle sensory module for signal transduction IF3_N PF05198.16 gi|332796755|ref|YP_004458255.1| - 0.072 13.4 0.3 3.2 8.1 0.0 2.5 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain DUF2288 PF10052.9 gi|332796755|ref|YP_004458255.1| - 0.1 12.7 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2288) TmoB PF06234.12 gi|332796755|ref|YP_004458255.1| - 0.11 12.6 0.1 0.18 11.9 0.1 1.4 1 0 0 1 1 1 0 Toluene-4-monooxygenase system protein B (TmoB) MH1 PF03165.16 gi|332796756|ref|YP_004458256.1| - 0.056 13.7 0.3 0.062 13.5 0.3 1.1 1 0 0 1 1 1 0 MH1 domain DeoC PF01791.9 gi|332796758|ref|YP_004458258.1| - 2.8e-33 115.5 0.0 3.4e-33 115.2 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PA PF02225.22 gi|332796758|ref|YP_004458258.1| - 0.031 14.3 0.2 0.5 10.4 0.0 2.3 2 0 0 2 2 2 0 PA domain ThiG PF05690.14 gi|332796758|ref|YP_004458258.1| - 0.039 13.2 0.4 0.56 9.5 0.0 2.6 3 0 0 3 3 3 0 Thiazole biosynthesis protein ThiG NTP_transferase PF00483.23 gi|332796759|ref|YP_004458259.1| - 2e-28 99.6 0.0 2.4e-28 99.4 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|332796759|ref|YP_004458259.1| - 7.5e-09 36.1 0.0 9.2e-09 35.8 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain Epimerase PF01370.21 gi|332796760|ref|YP_004458260.1| - 9.7e-28 97.2 0.0 1.6e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|332796760|ref|YP_004458260.1| - 1.5e-27 96.9 0.0 3.2e-27 95.8 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|332796760|ref|YP_004458260.1| - 6.8e-06 25.4 0.0 2e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|332796760|ref|YP_004458260.1| - 0.0014 17.9 0.0 0.0028 16.9 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|332796760|ref|YP_004458260.1| - 0.017 14.1 0.1 0.036 13.1 0.1 1.5 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|332796760|ref|YP_004458260.1| - 0.022 14.3 0.1 4 6.8 0.0 3.0 2 1 0 2 2 2 0 short chain dehydrogenase BcrAD_BadFG PF01869.20 gi|332796761|ref|YP_004458261.1| - 9.3e-40 136.8 0.4 1.1e-39 136.5 0.4 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family G_glu_transpept PF01019.21 gi|332796762|ref|YP_004458262.1| - 1e-76 258.8 0.0 2e-76 257.8 0.0 1.4 1 1 0 1 1 1 1 Gamma-glutamyltranspeptidase RraB PF06877.11 gi|332796763|ref|YP_004458263.1| - 0.11 13.2 0.1 0.5 11.1 0.0 1.9 1 1 1 2 2 2 0 Regulator of ribonuclease activity B MazG PF03819.17 gi|332796764|ref|YP_004458264.1| - 4e-11 42.9 0.6 4e-11 42.9 0.6 1.4 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|332796764|ref|YP_004458264.1| - 3.2e-05 24.1 0.1 3.2e-05 24.1 0.1 1.6 2 0 0 2 2 2 1 MazG-like family PRA-PH PF01503.17 gi|332796764|ref|YP_004458264.1| - 0.0012 19.2 0.9 0.0015 18.9 0.9 1.2 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase Helicase_RecD PF05127.14 gi|332796765|ref|YP_004458265.1| - 3.8e-47 160.4 0.0 7.5e-47 159.4 0.0 1.5 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|332796765|ref|YP_004458265.1| - 1.8e-34 119.1 0.0 1.5e-25 89.9 0.0 2.3 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|332796765|ref|YP_004458265.1| - 1.4e-23 82.6 0.1 3.2e-23 81.5 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1726) Acetyltransf_1 PF00583.25 gi|332796765|ref|YP_004458265.1| - 8e-05 22.9 0.0 0.00033 20.9 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|332796765|ref|YP_004458265.1| - 0.00043 20.6 0.0 0.0017 18.7 0.0 2.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|332796765|ref|YP_004458265.1| - 0.024 14.6 0.0 0.061 13.3 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|332796765|ref|YP_004458265.1| - 0.026 14.6 0.0 0.12 12.5 0.0 2.1 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase AA_permease_2 PF13520.6 gi|332796768|ref|YP_004458268.1| - 1.3e-15 57.2 57.1 1.4e-15 57.1 47.5 2.0 1 1 1 2 2 2 2 Amino acid permease AA_permease PF00324.21 gi|332796768|ref|YP_004458268.1| - 1.5e-12 46.9 45.3 1.5e-12 46.9 45.3 1.6 2 0 0 2 2 2 1 Amino acid permease Usp PF00582.26 gi|332796769|ref|YP_004458269.1| - 1.8e-28 99.8 0.1 2e-28 99.7 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|332796769|ref|YP_004458269.1| - 0.041 14.6 0.0 0.052 14.3 0.0 1.1 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase Type2_restr_D3 PF16902.5 gi|332796769|ref|YP_004458269.1| - 0.059 13.3 0.3 0.09 12.7 0.3 1.3 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain Xrn1_D3 PF18194.1 gi|332796769|ref|YP_004458269.1| - 0.067 13.3 1.1 0.13 12.3 1.1 1.6 1 1 0 1 1 1 0 Exoribonuclease 1 Domain-3 PmbA_TldD PF01523.16 gi|332796770|ref|YP_004458270.1| - 4.2e-34 118.7 0.3 6.7e-34 118.0 0.3 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF3658 PF12395.8 gi|332796770|ref|YP_004458270.1| - 0.022 14.6 0.1 0.071 13.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function PmbA_TldD PF01523.16 gi|332796771|ref|YP_004458271.1| - 3.5e-44 151.7 0.6 4.2e-44 151.5 0.6 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase NikR_C PF08753.11 gi|332796772|ref|YP_004458272.1| - 1.5e-22 79.5 1.8 2.3e-22 78.9 1.8 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain DUF2811 PF10929.8 gi|332796772|ref|YP_004458272.1| - 2.4e-05 24.5 0.0 3.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2811) RHH_1 PF01402.21 gi|332796772|ref|YP_004458272.1| - 0.0037 17.1 0.3 0.0096 15.8 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|332796772|ref|YP_004458272.1| - 0.022 14.9 0.4 0.044 13.9 0.1 1.7 2 1 0 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system Pribosyl_synth PF14572.6 gi|332796772|ref|YP_004458272.1| - 0.13 12.3 2.2 0.15 12.1 2.2 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain B3_4 PF03483.17 gi|332796773|ref|YP_004458273.1| - 1.9e-26 92.8 0.0 3.2e-26 92.1 0.0 1.4 1 0 0 1 1 1 1 B3/4 domain Homoserine_dh PF00742.19 gi|332796774|ref|YP_004458274.1| - 1e-47 162.3 0.1 1.8e-47 161.4 0.0 1.4 2 0 0 2 2 2 1 Homoserine dehydrogenase NAD_binding_3 PF03447.16 gi|332796774|ref|YP_004458274.1| - 3.2e-14 53.6 0.0 5.1e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain RTP1_C1 PF10363.9 gi|332796774|ref|YP_004458274.1| - 0.028 14.6 0.0 0.047 13.9 0.0 1.3 1 0 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 1 Sacchrp_dh_NADP PF03435.18 gi|332796774|ref|YP_004458274.1| - 0.052 13.8 0.0 0.15 12.3 0.0 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UbiA PF01040.18 gi|332796775|ref|YP_004458275.1| - 7.4e-53 179.4 16.8 9.8e-53 179.0 16.8 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3487 PF11990.8 gi|332796775|ref|YP_004458275.1| - 0.16 11.9 0.2 0.16 11.9 0.2 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF3487) TauE PF01925.19 gi|332796776|ref|YP_004458276.1| - 0.021 14.4 0.5 0.025 14.2 0.5 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE APS_kinase PF01583.20 gi|332796776|ref|YP_004458276.1| - 0.029 14.2 0.1 0.043 13.7 0.1 1.2 1 0 0 1 1 1 0 Adenylylsulphate kinase ECH_1 PF00378.20 gi|332796777|ref|YP_004458277.1| - 4.5e-73 245.7 0.1 5e-73 245.5 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|332796777|ref|YP_004458277.1| - 2.6e-42 145.5 0.0 8.9e-40 137.2 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase Radical_SAM PF04055.21 gi|332796778|ref|YP_004458278.1| - 7e-20 72.1 0.2 3.2e-19 69.9 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|332796778|ref|YP_004458278.1| - 0.0034 17.6 0.1 0.01 16.1 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain IBR PF01485.21 gi|332796778|ref|YP_004458278.1| - 0.047 13.9 1.2 0.099 12.9 0.2 2.0 2 0 0 2 2 2 0 IBR domain, a half RING-finger domain DZR PF12773.7 gi|332796778|ref|YP_004458278.1| - 1.5 8.9 5.8 0.82 9.7 0.1 2.9 3 1 0 3 3 3 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|332796778|ref|YP_004458278.1| - 1.9 8.3 0.0 1.9 8.3 0.0 3.2 4 0 0 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|332796778|ref|YP_004458278.1| - 3.1 7.3 6.1 6.8 6.3 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|332796778|ref|YP_004458278.1| - 4.6 7.2 7.7 0.74 9.7 1.2 2.8 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zinc_ribbon_2 PF13240.6 gi|332796778|ref|YP_004458278.1| - 6.7 6.6 9.6 6 6.7 0.1 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF309 PF03745.14 gi|332796779|ref|YP_004458279.1| - 3.3e-16 58.7 0.2 4.5e-16 58.3 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Adenosine_kin PF04008.14 gi|332796780|ref|YP_004458280.1| - 2.8e-78 261.0 0.3 3.2e-78 260.8 0.3 1.0 1 0 0 1 1 1 1 Adenosine specific kinase CarboxypepD_reg PF13620.6 gi|332796781|ref|YP_004458281.1| - 0.00048 20.3 0.7 0.00085 19.5 0.2 1.7 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain bMG3 PF11974.8 gi|332796781|ref|YP_004458281.1| - 0.0092 16.0 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial alpha-2-macroglobulin MG3 domain SdrD_B PF17210.3 gi|332796781|ref|YP_004458281.1| - 0.011 15.9 0.2 0.021 15.0 0.2 1.4 1 0 0 1 1 1 0 SdrD B-like domain DUF1416 PF07210.12 gi|332796781|ref|YP_004458281.1| - 0.016 15.0 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1416) NigD_N PF12667.7 gi|332796781|ref|YP_004458281.1| - 0.046 13.8 0.2 0.11 12.6 0.1 1.6 2 0 0 2 2 2 0 NigD-like N-terminal OB domain VIT1 PF01988.19 gi|332796782|ref|YP_004458282.1| - 0.00031 20.7 8.7 0.006 16.5 1.8 2.1 1 1 1 2 2 2 2 VIT family Phage_prot_Gp6 PF05133.14 gi|332796782|ref|YP_004458282.1| - 0.0005 19.3 0.1 0.00064 18.9 0.1 1.1 1 0 0 1 1 1 1 Phage portal protein, SPP1 Gp6-like DUF658 PF04936.12 gi|332796782|ref|YP_004458282.1| - 0.00096 18.9 0.0 0.0013 18.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF658) PGG PF13962.6 gi|332796782|ref|YP_004458282.1| - 0.057 13.2 0.6 0.057 13.2 0.6 2.1 1 1 1 3 3 3 0 Domain of unknown function DUF443 PF04276.12 gi|332796782|ref|YP_004458282.1| - 0.23 11.2 3.2 0.13 12.0 1.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF443) DUF4149 PF13664.6 gi|332796782|ref|YP_004458282.1| - 0.64 10.4 5.1 15 5.9 0.0 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4149) SafA PF17073.5 gi|332796782|ref|YP_004458282.1| - 7.8 6.5 7.2 0.46 10.5 1.1 2.2 3 0 0 3 3 3 0 Two-component-system connector protein Fusion_gly PF00523.18 gi|332796783|ref|YP_004458283.1| - 4.4 5.5 5.6 4.8 5.3 5.6 1.0 1 0 0 1 1 1 0 Fusion glycoprotein F0 Cupin_2 PF07883.11 gi|332796784|ref|YP_004458284.1| - 6.7e-16 57.8 0.2 9.3e-16 57.3 0.2 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|332796784|ref|YP_004458284.1| - 4.1e-09 36.2 0.0 7.6e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|332796784|ref|YP_004458284.1| - 7.2e-09 35.7 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CENP-C_C PF11699.8 gi|332796784|ref|YP_004458284.1| - 1.8e-07 31.2 0.1 3.9e-07 30.2 0.1 1.5 2 0 0 2 2 2 1 Mif2/CENP-C like ARD PF03079.14 gi|332796784|ref|YP_004458284.1| - 6.3e-05 23.2 1.1 0.00045 20.4 0.1 2.1 2 0 0 2 2 2 1 ARD/ARD' family Asp_Arg_Hydrox PF05118.15 gi|332796784|ref|YP_004458284.1| - 0.00081 19.2 0.0 0.0013 18.6 0.0 1.6 1 1 0 1 1 1 1 Aspartyl/Asparaginyl beta-hydroxylase MannoseP_isomer PF01050.18 gi|332796784|ref|YP_004458284.1| - 0.0046 16.9 0.7 0.045 13.6 0.1 2.0 2 0 0 2 2 2 1 Mannose-6-phosphate isomerase Auxin_BP PF02041.16 gi|332796784|ref|YP_004458284.1| - 0.041 13.5 0.1 0.09 12.4 0.1 1.6 1 1 0 1 1 1 0 Auxin binding protein EutQ PF06249.12 gi|332796784|ref|YP_004458284.1| - 0.086 12.6 0.0 0.17 11.7 0.0 1.5 1 1 0 1 1 1 0 Ethanolamine utilisation protein EutQ 3HCDH_N PF02737.18 gi|332796785|ref|YP_004458285.1| - 3.7e-53 180.1 0.0 5.1e-53 179.6 0.0 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|332796785|ref|YP_004458285.1| - 3.4e-18 66.0 0.2 7.9e-18 64.9 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|332796785|ref|YP_004458285.1| - 9.1e-06 25.7 0.0 2e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|332796785|ref|YP_004458285.1| - 4.1e-05 23.8 0.1 0.00047 20.4 0.0 2.3 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|332796785|ref|YP_004458285.1| - 0.00049 19.8 0.0 0.0024 17.6 0.0 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|332796785|ref|YP_004458285.1| - 0.001 19.5 0.1 0.0038 17.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|332796785|ref|YP_004458285.1| - 0.0037 16.5 0.0 0.0057 15.9 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|332796785|ref|YP_004458285.1| - 0.0083 15.7 0.1 0.016 14.8 0.1 1.6 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 gi|332796785|ref|YP_004458285.1| - 0.031 13.3 0.0 0.058 12.5 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.19 gi|332796785|ref|YP_004458285.1| - 0.033 13.6 0.3 0.089 12.1 0.1 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|332796785|ref|YP_004458285.1| - 0.034 14.4 0.1 0.08 13.2 0.1 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain F420_oxidored PF03807.17 gi|332796785|ref|YP_004458285.1| - 0.034 14.7 0.0 0.11 13.1 0.0 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|332796785|ref|YP_004458285.1| - 0.072 12.3 0.0 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Sacchrp_dh_NADP PF03435.18 gi|332796785|ref|YP_004458285.1| - 0.073 13.3 0.0 0.15 12.3 0.0 1.6 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|332796785|ref|YP_004458285.1| - 0.081 13.4 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Translin PF01997.16 gi|332796786|ref|YP_004458286.1| - 1.7e-07 31.4 0.8 0.00033 20.7 0.0 2.1 1 1 1 2 2 2 2 Translin family CREPT PF16566.5 gi|332796786|ref|YP_004458286.1| - 0.0036 17.5 0.7 0.006 16.8 0.7 1.4 1 0 0 1 1 1 1 Cell-cycle alteration and expression-elevated protein in tumour Exonuc_VII_S PF02609.16 gi|332796786|ref|YP_004458286.1| - 0.015 15.3 1.8 0.075 13.1 0.5 2.5 2 0 0 2 2 2 0 Exonuclease VII small subunit TPR_2 PF07719.17 gi|332796786|ref|YP_004458286.1| - 0.015 15.3 3.4 0.17 12.1 0.4 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Acyl-CoA_ox_N PF14749.6 gi|332796786|ref|YP_004458286.1| - 0.023 15.2 0.3 0.044 14.3 0.3 1.5 1 0 0 1 1 1 0 Acyl-coenzyme A oxidase N-terminal DUF2183 PF09949.9 gi|332796786|ref|YP_004458286.1| - 0.044 14.1 0.0 0.67 10.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2183) S6PP_C PF08472.10 gi|332796786|ref|YP_004458286.1| - 0.074 12.9 0.0 0.25 11.2 0.0 1.7 2 0 0 2 2 2 0 Sucrose-6-phosphate phosphohydrolase C-terminal SPACA9 PF15120.6 gi|332796786|ref|YP_004458286.1| - 0.079 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Sperm acrosome-associated protein 9 PPR_2 PF13041.6 gi|332796786|ref|YP_004458286.1| - 0.12 12.6 0.9 0.29 11.3 0.1 1.9 2 0 0 2 2 2 0 PPR repeat family TPR_1 PF00515.28 gi|332796786|ref|YP_004458286.1| - 1.9 8.5 4.6 5.6 7.0 0.6 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_11 PF13414.6 gi|332796786|ref|YP_004458286.1| - 2.4 7.9 4.9 2.6 7.8 0.9 2.8 3 0 0 3 3 3 0 TPR repeat RimK PF08443.11 gi|332796787|ref|YP_004458287.1| - 4.7e-32 111.1 0.0 6.4e-32 110.7 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|332796787|ref|YP_004458287.1| - 9.3e-08 32.3 0.0 1.4e-07 31.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|332796787|ref|YP_004458287.1| - 4.4e-07 29.5 0.0 6.8e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|332796787|ref|YP_004458287.1| - 0.00094 18.5 0.0 0.29 10.3 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|332796787|ref|YP_004458287.1| - 0.033 13.7 0.0 0.079 12.4 0.0 1.6 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D2 PF02786.17 gi|332796788|ref|YP_004458288.1| - 3e-97 324.2 0.0 4e-67 225.8 0.0 2.5 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|332796788|ref|YP_004458288.1| - 1.7e-33 115.6 1.3 5.8e-33 113.8 1.3 2.0 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATP-grasp PF02222.22 gi|332796788|ref|YP_004458288.1| - 3.2e-19 69.1 0.0 2.4e-10 40.3 0.0 2.4 2 0 0 2 2 2 2 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|332796788|ref|YP_004458288.1| - 5.1e-16 58.6 0.0 1.7e-08 34.2 0.0 2.6 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.13 gi|332796788|ref|YP_004458288.1| - 1.6e-15 57.2 0.2 1.5e-06 27.9 0.0 3.0 3 0 0 3 3 3 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|332796788|ref|YP_004458288.1| - 5.7e-10 39.5 0.3 1.1e-05 25.5 0.1 2.9 2 1 0 2 2 2 2 ATP-grasp domain RimK PF08443.11 gi|332796788|ref|YP_004458288.1| - 5.7e-07 29.3 0.1 2.3e-05 24.1 0.0 2.9 3 0 0 3 3 3 1 RimK-like ATP-grasp domain ATP-grasp_5 PF13549.6 gi|332796788|ref|YP_004458288.1| - 2.8e-05 23.7 0.0 0.011 15.2 0.0 2.9 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|332796788|ref|YP_004458288.1| - 4.9e-05 23.2 0.0 0.0082 15.9 0.0 3.1 2 1 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DUF4980 PF16352.5 gi|332796788|ref|YP_004458288.1| - 0.0081 16.1 0.0 0.15 12.0 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4980) Jag_N PF14804.6 gi|332796788|ref|YP_004458288.1| - 0.037 14.4 1.0 6.3 7.2 0.3 3.4 3 0 0 3 3 2 0 Jag N-terminus MGS PF02142.22 gi|332796788|ref|YP_004458288.1| - 0.044 14.0 0.2 0.88 9.8 0.1 3.1 3 0 0 3 3 3 0 MGS-like domain ATP-grasp_2 PF08442.10 gi|332796788|ref|YP_004458288.1| - 0.062 12.9 0.0 0.41 10.2 0.0 2.4 2 0 0 2 2 2 0 ATP-grasp domain CPSase_sm_chain PF00988.22 gi|332796789|ref|YP_004458289.1| - 2e-47 160.2 0.0 2.9e-47 159.7 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|332796789|ref|YP_004458289.1| - 2.5e-43 148.1 0.0 3.5e-43 147.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|332796789|ref|YP_004458289.1| - 1.9e-08 34.4 0.2 1.8e-06 27.9 0.2 2.2 1 1 0 1 1 1 1 Peptidase C26 Lyase_1 PF00206.20 gi|332796790|ref|YP_004458290.1| - 4.6e-44 151.1 0.0 8.2e-44 150.3 0.0 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|332796790|ref|YP_004458290.1| - 0.11 13.3 0.0 0.45 11.3 0.0 2.3 1 1 0 1 1 1 0 Argininosuccinate lyase C-terminal DUF1048 PF06304.11 gi|332796790|ref|YP_004458290.1| - 0.19 12.2 2.0 2.5 8.6 0.0 3.1 4 0 0 4 4 4 0 Protein of unknown function (DUF1048) PIN_12 PF16289.5 gi|332796790|ref|YP_004458290.1| - 1.6 9.2 8.8 3.6 8.0 1.1 2.7 2 1 0 2 2 2 0 PIN domain Arginosuc_synth PF00764.19 gi|332796791|ref|YP_004458291.1| - 1.9e-146 488.3 0.1 2.2e-146 488.1 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|332796791|ref|YP_004458291.1| - 8.3e-05 22.2 0.1 0.00061 19.4 0.1 2.1 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|332796791|ref|YP_004458291.1| - 0.15 10.8 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase OrsD PF12013.8 gi|332796792|ref|YP_004458292.1| - 0.0012 19.2 0.2 0.0021 18.5 0.2 1.4 1 0 0 1 1 1 1 Orsellinic acid/F9775 biosynthesis cluster protein D DUF4423 PF14394.6 gi|332796792|ref|YP_004458292.1| - 0.0094 15.7 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) PapB PF03333.13 gi|332796792|ref|YP_004458292.1| - 0.0097 15.9 0.0 0.018 15.1 0.0 1.5 1 0 0 1 1 1 1 Adhesin biosynthesis transcription regulatory protein AIRS_C PF02769.22 gi|332796793|ref|YP_004458293.1| - 2.5e-25 89.4 0.0 5e-25 88.4 0.0 1.5 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|332796793|ref|YP_004458293.1| - 1.7e-15 57.4 1.0 3.1e-15 56.6 1.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain GARS_A PF01071.19 gi|332796794|ref|YP_004458294.1| - 1e-39 136.3 0.0 1.8e-39 135.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|332796794|ref|YP_004458294.1| - 2.3e-17 63.6 0.0 4.8e-17 62.5 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|332796794|ref|YP_004458294.1| - 2.2e-07 31.1 0.0 4.5e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.6 gi|332796794|ref|YP_004458294.1| - 0.0002 21.0 0.0 0.00057 19.5 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|332796794|ref|YP_004458294.1| - 0.0036 16.6 0.0 0.006 15.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|332796794|ref|YP_004458294.1| - 0.0056 16.2 0.0 0.0092 15.5 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Cauli_VI PF01693.16 gi|332796794|ref|YP_004458294.1| - 0.14 12.4 0.5 2.9 8.3 0.1 2.5 2 0 0 2 2 2 0 Caulimovirus viroplasmin Pribosyltran PF00156.27 gi|332796795|ref|YP_004458295.1| - 6.6e-10 38.7 0.3 2e-09 37.1 0.3 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_7 PF13537.6 gi|332796795|ref|YP_004458295.1| - 0.00074 19.4 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain PRTase_2 PF15609.6 gi|332796795|ref|YP_004458295.1| - 0.017 14.6 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase GATase_7 PF13537.6 gi|332796796|ref|YP_004458296.1| - 5.5e-14 52.1 0.0 2.9e-13 49.8 0.0 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|332796796|ref|YP_004458296.1| - 2.5e-13 50.4 0.0 4.9e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|332796796|ref|YP_004458296.1| - 8.9e-11 41.6 0.8 3.3e-10 39.7 0.3 1.9 2 0 0 2 2 2 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|332796796|ref|YP_004458296.1| - 0.0059 15.5 0.0 0.0091 14.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_2 PF00310.21 gi|332796796|ref|YP_004458296.1| - 0.028 13.2 0.0 5.3 5.6 0.0 2.2 1 1 1 2 2 2 0 Glutamine amidotransferases class-II PRTase_2 PF15609.6 gi|332796796|ref|YP_004458296.1| - 0.072 12.6 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 Phosphoribosyl transferase Med24_N PF11277.8 gi|332796796|ref|YP_004458296.1| - 0.21 9.6 0.0 0.27 9.2 0.0 1.1 1 0 0 1 1 1 0 Mediator complex subunit 24 N-terminal AIRS_C PF02769.22 gi|332796797|ref|YP_004458297.1| - 3.2e-41 141.1 1.0 2.4e-29 102.5 0.5 2.2 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|332796797|ref|YP_004458297.1| - 1e-39 135.1 0.1 2.3e-21 76.3 0.1 2.4 2 0 0 2 2 2 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|332796797|ref|YP_004458297.1| - 3.7e-08 33.8 0.8 3.7e-08 33.8 0.8 1.9 2 0 0 2 2 2 1 Formylglycinamide ribonucleotide amidotransferase linker domain GATase_5 PF13507.6 gi|332796798|ref|YP_004458298.1| - 1.8e-45 155.0 0.0 2.3e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|332796798|ref|YP_004458298.1| - 2.3e-11 43.8 0.0 3.7e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|332796798|ref|YP_004458298.1| - 9.4e-10 38.4 0.0 2.7e-09 36.9 0.0 1.7 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|332796798|ref|YP_004458298.1| - 3.4e-07 30.2 0.0 6e-07 29.4 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I SNO PF01174.19 gi|332796798|ref|YP_004458298.1| - 0.00012 22.0 0.0 0.00025 21.0 0.0 1.5 2 0 0 2 2 2 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|332796798|ref|YP_004458298.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 SAICAR_synt PF01259.18 gi|332796799|ref|YP_004458299.1| - 2.7e-52 177.9 0.3 3e-52 177.7 0.3 1.0 1 0 0 1 1 1 1 SAICAR synthetase tRNA_bind PF01588.20 gi|332796800|ref|YP_004458300.1| - 4.5e-28 97.2 0.1 5.2e-28 97.0 0.1 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain NOG1_N PF17835.1 gi|332796801|ref|YP_004458301.1| - 3.3e-39 134.4 1.2 3.3e-39 134.4 1.2 1.7 2 0 0 2 2 2 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|332796801|ref|YP_004458301.1| - 6.7e-22 77.7 0.1 1.9e-21 76.3 0.1 1.8 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|332796801|ref|YP_004458301.1| - 1.8e-20 73.1 0.2 3e-20 72.3 0.2 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B NOG1 PF06858.14 gi|332796801|ref|YP_004458301.1| - 8e-18 64.0 0.5 6.3e-17 61.1 0.4 2.4 2 0 0 2 2 2 1 Nucleolar GTP-binding protein 1 (NOG1) Ras PF00071.22 gi|332796801|ref|YP_004458301.1| - 3.7e-10 39.6 0.2 1.2e-09 37.9 0.0 1.9 2 0 0 2 2 2 1 Ras family RsgA_GTPase PF03193.16 gi|332796801|ref|YP_004458301.1| - 1.5e-07 31.5 7.4 0.00059 19.8 1.5 3.1 1 1 1 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|332796801|ref|YP_004458301.1| - 1.5e-05 24.6 0.8 0.032 13.8 0.6 3.1 1 1 1 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|332796801|ref|YP_004458301.1| - 3e-05 23.6 0.1 6.3e-05 22.5 0.1 1.5 1 1 0 1 1 1 1 ADP-ribosylation factor family MMR_HSR1_Xtn PF16897.5 gi|332796801|ref|YP_004458301.1| - 3.1e-05 23.9 0.8 3.1e-05 23.9 0.8 2.1 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain AIG1 PF04548.16 gi|332796801|ref|YP_004458301.1| - 3.8e-05 23.1 2.6 9e-05 21.9 0.7 2.4 2 1 1 3 3 3 1 AIG1 family PduV-EutP PF10662.9 gi|332796801|ref|YP_004458301.1| - 5.3e-05 23.0 0.8 0.00016 21.4 0.3 2.0 2 1 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation SRPRB PF09439.10 gi|332796801|ref|YP_004458301.1| - 0.0017 17.8 0.2 0.0033 16.9 0.2 1.5 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit ATP_bind_1 PF03029.17 gi|332796801|ref|YP_004458301.1| - 0.0038 17.0 0.2 1.1 9.0 0.1 2.6 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.23 gi|332796801|ref|YP_004458301.1| - 0.0054 16.8 2.4 0.034 14.2 2.2 2.3 1 1 0 1 1 1 1 Dynamin family TniB PF05621.11 gi|332796801|ref|YP_004458301.1| - 0.0056 16.1 0.0 0.018 14.5 0.0 1.9 1 1 0 1 1 1 1 Bacterial TniB protein KTI12 PF08433.10 gi|332796801|ref|YP_004458301.1| - 0.015 14.7 0.0 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 NTPase_1 PF03266.15 gi|332796801|ref|YP_004458301.1| - 0.015 15.2 1.0 0.073 13.0 0.0 2.3 1 1 0 2 2 2 0 NTPase AAA_18 PF13238.6 gi|332796801|ref|YP_004458301.1| - 0.036 14.6 1.2 0.19 12.3 0.4 2.6 2 1 0 2 2 2 0 AAA domain DUF4878 PF12870.7 gi|332796801|ref|YP_004458301.1| - 0.069 13.5 0.5 3 8.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4878) Roc PF08477.13 gi|332796801|ref|YP_004458301.1| - 0.089 13.0 0.1 0.69 10.1 0.0 2.6 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA PF00004.29 gi|332796801|ref|YP_004458301.1| - 0.098 13.1 0.3 0.29 11.6 0.1 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MnmE_helical PF12631.7 gi|332796801|ref|YP_004458301.1| - 0.14 12.3 1.7 0.25 11.5 0.4 1.8 1 1 1 2 2 2 0 MnmE helical domain TYW3 PF02676.14 gi|332796802|ref|YP_004458302.1| - 4.2e-31 108.0 0.0 7.9e-31 107.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase TYW3 DUF4258 PF14076.6 gi|332796802|ref|YP_004458302.1| - 0.066 13.6 1.1 0.44 11.0 0.0 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4258) DsrC PF04358.13 gi|332796802|ref|YP_004458302.1| - 0.12 12.8 1.0 4.4 7.9 0.2 2.8 2 1 1 3 3 3 0 DsrC like protein AAA_lid_1 PF17857.1 gi|332796802|ref|YP_004458302.1| - 0.34 11.2 2.1 5.5 7.3 0.3 2.4 2 0 0 2 2 2 0 AAA+ lid domain LEDGF PF11467.8 gi|332796803|ref|YP_004458303.1| - 0.066 12.8 0.1 0.25 11.0 0.0 1.8 2 0 0 2 2 2 0 Lens epithelium-derived growth factor (LEDGF) PP1 PF07430.11 gi|332796803|ref|YP_004458303.1| - 0.33 11.0 3.0 0.25 11.4 0.7 1.8 2 0 0 2 2 2 0 Phloem filament protein PP1 cystatin-like domain Pyr_redox_2 PF07992.14 gi|332796804|ref|YP_004458304.1| - 5.9e-66 222.7 1.5 7.6e-66 222.3 1.5 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332796804|ref|YP_004458304.1| - 1.3e-26 93.0 0.0 2.8e-26 91.9 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|332796804|ref|YP_004458304.1| - 5.1e-22 78.2 12.2 1.2e-19 70.6 0.1 3.3 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332796804|ref|YP_004458304.1| - 2.8e-14 53.1 3.2 6.5e-14 51.9 3.2 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|332796804|ref|YP_004458304.1| - 2.6e-11 43.3 0.3 0.0001 21.7 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|332796804|ref|YP_004458304.1| - 4.8e-11 42.7 0.8 3.9e-08 33.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332796804|ref|YP_004458304.1| - 1.2e-10 41.1 8.0 4.7e-08 32.5 2.5 2.5 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|332796804|ref|YP_004458304.1| - 1.7e-10 41.0 10.4 0.00015 21.5 4.0 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase GIDA PF01134.22 gi|332796804|ref|YP_004458304.1| - 6.1e-10 38.7 19.6 2.3e-07 30.3 7.5 4.3 3 2 1 4 4 4 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|332796804|ref|YP_004458304.1| - 4.5e-09 36.4 0.9 0.00033 20.8 0.4 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|332796804|ref|YP_004458304.1| - 4.9e-09 35.4 13.4 0.00035 19.4 1.1 4.1 3 1 1 4 4 4 3 HI0933-like protein FAD_binding_3 PF01494.19 gi|332796804|ref|YP_004458304.1| - 3.7e-07 29.7 0.2 0.021 14.1 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|332796804|ref|YP_004458304.1| - 0.00014 21.1 2.1 0.2 10.7 0.0 2.7 2 1 0 2 2 2 2 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|332796804|ref|YP_004458304.1| - 0.0002 21.3 4.1 0.034 14.0 0.0 2.8 3 0 0 3 3 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|332796804|ref|YP_004458304.1| - 0.00026 20.0 6.2 0.0069 15.3 0.3 2.7 3 0 0 3 3 3 2 Tryptophan halogenase Thi4 PF01946.17 gi|332796804|ref|YP_004458304.1| - 0.0015 17.8 1.7 0.031 13.5 0.4 2.7 2 0 0 2 2 2 1 Thi4 family NAD_binding_7 PF13241.6 gi|332796804|ref|YP_004458304.1| - 0.003 17.9 1.8 2.5 8.6 0.0 2.5 2 1 0 2 2 2 2 Putative NAD(P)-binding TrkA_N PF02254.18 gi|332796804|ref|YP_004458304.1| - 0.0053 17.0 2.0 2.4 8.4 0.0 2.8 2 0 0 2 2 2 2 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|332796804|ref|YP_004458304.1| - 0.044 13.8 0.1 3.9 7.4 0.0 2.4 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DUF4876 PF16215.5 gi|332796804|ref|YP_004458304.1| - 0.087 12.8 0.1 0.16 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4876) HTH_5 PF01022.20 gi|332796805|ref|YP_004458305.1| - 9e-10 38.3 0.9 1.4e-09 37.6 0.9 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332796805|ref|YP_004458305.1| - 4.3e-05 23.5 0.1 0.00013 21.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|332796805|ref|YP_004458305.1| - 0.0031 17.0 2.6 0.023 14.3 1.5 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|332796805|ref|YP_004458305.1| - 0.0073 16.3 0.4 0.01 15.8 0.4 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix TrmB PF01978.19 gi|332796805|ref|YP_004458305.1| - 0.0081 16.0 0.0 0.017 15.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB TnsD PF15978.5 gi|332796805|ref|YP_004458305.1| - 0.045 12.7 0.0 0.045 12.7 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D Phage_rep_O PF04492.13 gi|332796805|ref|YP_004458305.1| - 0.051 14.2 0.0 0.087 13.4 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O PhoU PF01895.19 gi|332796807|ref|YP_004458307.1| - 4.3e-28 97.6 12.9 8.2e-20 71.1 4.5 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|332796807|ref|YP_004458307.1| - 1.6e-12 47.1 0.1 4.2e-12 45.7 0.1 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin DUF4329 PF14220.6 gi|332796808|ref|YP_004458308.1| - 0.015 15.3 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4329) DUF4231 PF14015.6 gi|332796808|ref|YP_004458308.1| - 0.028 14.9 0.7 11 6.6 0.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF4231) Prok-JAB PF14464.6 gi|332796808|ref|YP_004458308.1| - 0.036 13.9 0.0 0.051 13.4 0.0 1.3 1 0 0 1 1 1 0 Prokaryotic homologs of the JAB domain OMPdecase PF00215.24 gi|332796809|ref|YP_004458309.1| - 1e-22 80.9 0.0 1.5e-22 80.3 0.0 1.2 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family Pribosyltran PF00156.27 gi|332796810|ref|YP_004458310.1| - 1.8e-19 69.8 0.3 2.9e-19 69.1 0.3 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|332796810|ref|YP_004458310.1| - 0.041 13.3 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase OTCace_N PF02729.21 gi|332796811|ref|YP_004458311.1| - 2.3e-40 138.0 0.0 3.4e-40 137.4 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|332796811|ref|YP_004458311.1| - 4.7e-25 88.5 0.0 1.4e-24 87.0 0.0 1.7 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|332796812|ref|YP_004458312.1| - 1.2e-35 121.6 3.1 1.7e-35 121.1 3.1 1.2 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|332796812|ref|YP_004458312.1| - 8.5e-19 67.2 0.9 1.4e-18 66.5 0.9 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DHODB_Fe-S_bind PF10418.9 gi|332796813|ref|YP_004458313.1| - 0.046 13.5 4.1 0.046 13.5 4.1 2.1 2 0 0 2 2 2 0 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B zinc_ribbon_6 PF14599.6 gi|332796813|ref|YP_004458313.1| - 0.09 12.8 0.6 0.28 11.2 0.0 2.1 2 0 0 2 2 2 0 Zinc-ribbon Amidohydro_1 PF01979.20 gi|332796814|ref|YP_004458314.1| - 2.4e-16 60.0 0.0 9.3e-13 48.2 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_3 PF07969.11 gi|332796814|ref|YP_004458314.1| - 2.3e-07 30.6 0.0 3.2e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Amidohydrolase family DHO_dh PF01180.21 gi|332796815|ref|YP_004458315.1| - 2.6e-43 148.3 0.6 3.1e-43 148.1 0.6 1.1 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|332796815|ref|YP_004458315.1| - 6.7e-07 28.7 0.1 1.1e-06 27.9 0.1 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Lipase_GDSL_2 PF13472.6 gi|332796815|ref|YP_004458315.1| - 0.058 13.8 0.0 0.09 13.2 0.0 1.3 1 0 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family GluRS_N PF18466.1 gi|332796816|ref|YP_004458316.1| - 0.1 13.1 1.1 0.1 13.1 1.1 1.8 2 0 0 2 2 2 0 Glutamate--tRNA ligase N-terminal domain TrwB_AAD_bind PF10412.9 gi|332796817|ref|YP_004458317.1| - 0.015 14.2 0.1 0.017 14.0 0.1 1.0 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Perilipin PF03036.16 gi|332796817|ref|YP_004458317.1| - 0.023 13.7 1.0 0.026 13.5 1.0 1.0 1 0 0 1 1 1 0 Perilipin family DUF4446 PF14584.6 gi|332796817|ref|YP_004458317.1| - 0.033 14.2 1.1 0.066 13.2 0.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4446) Aida_N PF08910.10 gi|332796817|ref|YP_004458317.1| - 0.067 13.6 1.1 0.1 13.0 0.5 1.6 1 1 1 2 2 2 0 Aida N-terminus FlaC_arch PF05377.11 gi|332796817|ref|YP_004458317.1| - 0.077 13.4 1.2 0.077 13.4 1.2 2.8 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) FliS PF02561.14 gi|332796817|ref|YP_004458317.1| - 0.12 12.7 2.9 0.22 11.8 2.9 1.4 1 1 0 1 1 1 0 Flagellar protein FliS ERp29 PF07749.12 gi|332796817|ref|YP_004458317.1| - 0.16 12.9 3.4 0.23 12.4 3.4 1.3 1 1 0 1 1 1 0 Endoplasmic reticulum protein ERp29, C-terminal domain Occludin_ELL PF07303.13 gi|332796817|ref|YP_004458317.1| - 0.34 11.7 6.6 0.57 10.9 1.2 2.0 1 1 1 2 2 2 0 Occludin homology domain KxDL PF10241.9 gi|332796817|ref|YP_004458317.1| - 0.36 11.1 3.9 15 6.0 0.6 2.5 1 1 0 2 2 2 0 Uncharacterized conserved protein RRP36 PF06102.12 gi|332796817|ref|YP_004458317.1| - 0.37 10.8 4.9 0.44 10.5 4.9 1.2 1 0 0 1 1 1 0 rRNA biogenesis protein RRP36 PNPase PF03726.14 gi|332796817|ref|YP_004458317.1| - 0.74 10.3 6.0 10 6.7 0.8 2.9 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain DUF724 PF05266.14 gi|332796817|ref|YP_004458317.1| - 4.1 7.2 11.3 2 8.2 6.4 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF724) MarC PF01914.17 gi|332796818|ref|YP_004458318.1| - 4.5e-29 101.3 15.2 5.7e-29 101.0 15.2 1.1 1 0 0 1 1 1 1 MarC family integral membrane protein AsnC_trans_reg PF01037.21 gi|332796819|ref|YP_004458319.1| - 1.1e-18 66.9 0.5 1.7e-18 66.3 0.5 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|332796819|ref|YP_004458319.1| - 3.3e-13 49.0 1.3 2.8e-12 46.0 1.3 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|332796819|ref|YP_004458319.1| - 7.2e-10 38.5 3.9 1.4e-09 37.7 3.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|332796819|ref|YP_004458319.1| - 1.8e-05 24.5 0.1 2.9e-05 23.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|332796819|ref|YP_004458319.1| - 0.00014 21.7 0.2 0.00028 20.8 0.2 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|332796819|ref|YP_004458319.1| - 0.0011 18.7 0.0 0.0021 17.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|332796819|ref|YP_004458319.1| - 0.0047 17.1 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|332796819|ref|YP_004458319.1| - 0.0055 16.5 0.4 0.0089 15.8 0.4 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|332796819|ref|YP_004458319.1| - 0.0061 16.4 0.6 0.014 15.3 0.6 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|332796819|ref|YP_004458319.1| - 0.0079 16.1 0.1 0.018 14.9 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|332796819|ref|YP_004458319.1| - 0.0081 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix HTH_38 PF13936.6 gi|332796819|ref|YP_004458319.1| - 0.0091 15.7 0.9 0.03 14.1 0.9 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|332796819|ref|YP_004458319.1| - 0.01 15.6 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain GntR PF00392.21 gi|332796819|ref|YP_004458319.1| - 0.012 15.2 0.1 0.021 14.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Dabb PF07876.12 gi|332796819|ref|YP_004458319.1| - 0.013 16.1 0.1 0.045 14.4 0.0 1.9 2 0 0 2 2 2 0 Stress responsive A/B Barrel Domain ANAPC2 PF08672.11 gi|332796819|ref|YP_004458319.1| - 0.014 15.9 0.0 4.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Anaphase promoting complex (APC) subunit 2 TrmB PF01978.19 gi|332796819|ref|YP_004458319.1| - 0.022 14.7 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|332796819|ref|YP_004458319.1| - 0.028 14.8 0.0 0.07 13.5 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator DUF4250 PF14056.6 gi|332796819|ref|YP_004458319.1| - 0.038 13.9 0.7 0.079 12.9 0.2 1.8 2 0 0 2 2 1 0 Domain of unknown function (DUF4250) HTH_50 PF18024.1 gi|332796819|ref|YP_004458319.1| - 0.04 13.5 1.4 0.12 12.0 0.1 2.4 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_30 PF13556.6 gi|332796819|ref|YP_004458319.1| - 0.041 13.7 0.4 0.082 12.7 0.3 1.5 1 1 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_27 PF13463.6 gi|332796819|ref|YP_004458319.1| - 0.042 14.4 0.3 0.12 12.9 0.1 1.9 2 1 0 2 2 1 0 Winged helix DNA-binding domain Clp_N PF02861.20 gi|332796819|ref|YP_004458319.1| - 0.049 13.8 0.1 0.098 12.8 0.1 1.5 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component HTH_8 PF02954.19 gi|332796819|ref|YP_004458319.1| - 0.059 13.2 0.2 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|332796819|ref|YP_004458319.1| - 0.081 13.0 0.3 0.15 12.1 0.3 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain MIase PF02426.16 gi|332796819|ref|YP_004458319.1| - 0.083 13.1 0.0 0.19 11.9 0.0 1.6 2 0 0 2 2 2 0 Muconolactone delta-isomerase HTH_Tnp_ISL3 PF13542.6 gi|332796819|ref|YP_004458319.1| - 0.087 12.3 0.1 0.14 11.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 AsnC_trans_reg2 PF17805.1 gi|332796819|ref|YP_004458319.1| - 0.14 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 AsnC-like ligand binding domain RNA_POL_M_15KD PF02150.16 gi|332796820|ref|YP_004458320.1| - 1.1e-09 38.0 1.5 2.2e-09 37.0 1.5 1.6 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-NADH-PPase PF09297.11 gi|332796820|ref|YP_004458320.1| - 0.00022 20.8 1.0 0.0012 18.4 1.0 2.1 1 1 0 1 1 1 1 NADH pyrophosphatase zinc ribbon domain Lar_restr_allev PF14354.6 gi|332796820|ref|YP_004458320.1| - 0.00041 20.7 2.1 0.00083 19.7 2.1 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-TFIIB PF13453.6 gi|332796820|ref|YP_004458320.1| - 0.00078 18.7 1.5 0.0013 18.0 1.5 1.4 1 0 0 1 1 1 1 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|332796820|ref|YP_004458320.1| - 0.0019 18.1 0.2 0.0042 17.0 0.2 1.5 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2387 PF09526.10 gi|332796820|ref|YP_004458320.1| - 0.0022 18.1 3.2 0.0024 18.0 2.4 1.5 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) UPF0547 PF10571.9 gi|332796820|ref|YP_004458320.1| - 0.0044 17.1 1.8 0.32 11.1 0.1 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 IBR PF01485.21 gi|332796820|ref|YP_004458320.1| - 0.0064 16.7 0.9 0.012 15.8 0.9 1.4 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain zf-ribbon_3 PF13248.6 gi|332796820|ref|YP_004458320.1| - 0.0097 15.3 4.0 0.26 10.8 0.5 2.3 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|332796820|ref|YP_004458320.1| - 0.011 15.4 6.3 0.31 10.8 0.5 2.6 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|332796820|ref|YP_004458320.1| - 0.012 15.7 0.7 0.019 15.0 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|332796820|ref|YP_004458320.1| - 0.016 15.2 4.0 0.031 14.2 1.3 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|332796820|ref|YP_004458320.1| - 0.075 12.9 0.9 0.12 12.3 0.9 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 gi|332796820|ref|YP_004458320.1| - 0.076 13.8 3.6 1.5 9.6 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon family zf-IS66 PF13005.7 gi|332796820|ref|YP_004458320.1| - 0.077 13.4 3.3 0.32 11.4 0.2 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.13 gi|332796820|ref|YP_004458320.1| - 0.11 12.2 2.8 0.27 11.0 2.8 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit A2L_zn_ribbon PF08792.10 gi|332796820|ref|YP_004458320.1| - 0.14 11.9 6.2 0.66 9.8 0.9 2.5 1 1 0 2 2 2 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|332796820|ref|YP_004458320.1| - 0.17 11.7 5.4 0.45 10.3 0.4 2.3 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|332796820|ref|YP_004458320.1| - 0.18 11.7 3.3 0.8 9.7 3.4 1.9 1 1 1 2 2 2 0 Nudix N-terminal Zn_ribbon_recom PF13408.6 gi|332796820|ref|YP_004458320.1| - 0.31 11.6 4.2 0.87 10.1 4.2 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Zn-ribbon_8 PF09723.10 gi|332796820|ref|YP_004458320.1| - 0.56 10.4 5.0 13 6.0 0.5 2.2 1 1 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|332796820|ref|YP_004458320.1| - 1.3 8.6 5.4 6.6 6.3 4.5 2.5 2 1 0 2 2 2 0 TFIIB zinc-binding APP_N PF02177.16 gi|332796821|ref|YP_004458321.1| - 0.16 12.4 4.1 0.2 12.0 4.1 1.2 1 0 0 1 1 1 0 Amyloid A4 N-terminal heparin-binding Radical_SAM PF04055.21 gi|332796822|ref|YP_004458322.1| - 7.4e-16 59.0 0.0 1.3e-15 58.2 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily tRNA-synt_2b PF00587.25 gi|332796823|ref|YP_004458323.1| - 1.4e-38 132.6 0.0 2.5e-38 131.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.22 gi|332796823|ref|YP_004458323.1| - 2.6e-20 72.6 14.4 2.6e-20 72.6 14.4 2.0 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain Dor1 PF04124.12 gi|332796823|ref|YP_004458323.1| - 0.0036 16.0 0.6 0.046 12.4 0.3 2.2 2 0 0 2 2 2 1 Dor1-like family APG6_N PF17675.1 gi|332796823|ref|YP_004458323.1| - 0.0037 17.8 12.8 0.25 11.9 10.1 3.3 3 0 0 3 3 3 1 Apg6 coiled-coil region FapA PF03961.13 gi|332796823|ref|YP_004458323.1| - 0.0071 15.0 4.4 0.013 14.2 4.4 1.4 1 0 0 1 1 1 1 Flagellar Assembly Protein A RNA_pol_Rpb5_C PF01191.19 gi|332796823|ref|YP_004458323.1| - 0.18 11.7 1.5 0.57 10.1 1.5 1.9 1 0 0 1 1 1 0 RNA polymerase Rpb5, C-terminal domain PCRF PF03462.18 gi|332796823|ref|YP_004458323.1| - 0.19 11.5 4.0 0.12 12.2 1.6 1.9 2 0 0 2 2 2 0 PCRF domain FYRC PF05965.14 gi|332796823|ref|YP_004458323.1| - 0.22 11.7 0.7 0.52 10.5 0.1 1.9 2 0 0 2 2 1 0 F/Y rich C-terminus Allexi_40kDa PF05549.11 gi|332796823|ref|YP_004458323.1| - 0.27 10.7 1.1 0.49 9.9 1.1 1.3 1 0 0 1 1 1 0 Allexivirus 40kDa protein AAA_23 PF13476.6 gi|332796823|ref|YP_004458323.1| - 0.34 11.4 8.4 0.76 10.2 8.4 1.6 1 0 0 1 1 1 0 AAA domain Bap31_Bap29_C PF18035.1 gi|332796823|ref|YP_004458323.1| - 0.46 10.5 0.1 0.46 10.5 0.1 3.3 3 0 0 3 3 2 0 Bap31/Bap29 cytoplasmic coiled-coil domain FemAB PF02388.16 gi|332796823|ref|YP_004458323.1| - 0.99 8.2 5.3 1.8 7.3 5.3 1.4 1 0 0 1 1 1 0 FemAB family eIF-4B PF06273.11 gi|332796823|ref|YP_004458323.1| - 4.1 6.4 4.5 20 4.1 4.5 1.8 2 0 0 2 2 2 0 Plant specific eukaryotic initiation factor 4B KELK PF15796.5 gi|332796823|ref|YP_004458323.1| - 4.2 7.9 14.2 37 4.9 10.7 2.9 3 0 0 3 3 3 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase Spectrin PF00435.21 gi|332796823|ref|YP_004458323.1| - 5.7 7.5 11.6 3.4 8.2 6.2 2.9 2 1 1 3 3 3 0 Spectrin repeat FeS_assembly_P PF01883.19 gi|332796824|ref|YP_004458324.1| - 7e-20 71.0 0.5 1.2e-19 70.3 0.5 1.4 1 1 0 1 1 1 1 Iron-sulfur cluster assembly protein NifU PF01106.17 gi|332796824|ref|YP_004458324.1| - 0.024 14.8 0.0 0.038 14.1 0.0 1.4 1 1 0 1 1 1 0 NifU-like domain HTH_34 PF13601.6 gi|332796824|ref|YP_004458324.1| - 0.16 12.1 0.0 0.29 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain PRA-CH PF01502.18 gi|332796825|ref|YP_004458325.1| - 7.8e-30 102.5 0.0 1.1e-29 102.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase LpxI_N PF17930.1 gi|332796825|ref|YP_004458325.1| - 0.034 14.0 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 LpxI N-terminal domain GATase PF00117.28 gi|332796826|ref|YP_004458326.1| - 1.7e-20 73.6 0.0 1.9e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|332796826|ref|YP_004458326.1| - 0.00019 21.1 0.2 0.00032 20.3 0.2 1.5 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain PRA-PH PF01503.17 gi|332796827|ref|YP_004458327.1| - 8.2e-18 64.6 0.2 9.1e-18 64.5 0.2 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase ETC_C1_NDUFA5 PF04716.14 gi|332796827|ref|YP_004458327.1| - 0.018 14.8 0.2 0.029 14.2 0.2 1.5 1 1 0 1 1 1 0 ETC complex I subunit conserved region Histidinol_dh PF00815.20 gi|332796828|ref|YP_004458328.1| - 1.3e-132 442.6 2.2 1.3e-131 439.4 2.2 1.9 1 1 0 1 1 1 1 Histidinol dehydrogenase His_biosynth PF00977.21 gi|332796829|ref|YP_004458329.1| - 9.4e-87 290.2 3.9 1.1e-86 290.1 3.9 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein NMO PF03060.15 gi|332796829|ref|YP_004458329.1| - 1.9e-09 37.3 2.8 0.00049 19.6 1.1 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase TMP-TENI PF02581.17 gi|332796829|ref|YP_004458329.1| - 1.4e-06 27.8 0.6 0.019 14.3 0.2 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase ThiG PF05690.14 gi|332796829|ref|YP_004458329.1| - 3.1e-06 26.7 0.4 0.0044 16.3 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|332796829|ref|YP_004458329.1| - 4.7e-05 22.6 0.0 0.014 14.5 0.0 2.3 1 1 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|332796829|ref|YP_004458329.1| - 9.7e-05 21.7 0.3 0.029 13.6 0.1 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|332796829|ref|YP_004458329.1| - 0.00014 21.3 0.2 0.011 15.2 0.1 2.3 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator PcrB PF01884.17 gi|332796829|ref|YP_004458329.1| - 0.0095 15.4 0.5 0.018 14.5 0.1 1.6 2 0 0 2 2 2 1 PcrB family FMN_dh PF01070.18 gi|332796829|ref|YP_004458329.1| - 0.019 14.0 2.4 0.16 11.0 0.1 2.5 2 1 1 3 3 3 0 FMN-dependent dehydrogenase SBP_bac_3 PF00497.20 gi|332796829|ref|YP_004458329.1| - 0.022 14.2 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 IMPDH PF00478.25 gi|332796829|ref|YP_004458329.1| - 0.033 13.2 1.4 1.4 7.8 0.2 2.2 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain IGPD PF00475.18 gi|332796830|ref|YP_004458330.1| - 1.1e-53 181.4 0.2 1.6e-53 180.9 0.2 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase His_biosynth PF00977.21 gi|332796831|ref|YP_004458331.1| - 1.5e-46 158.8 2.1 1.6e-46 158.6 2.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|332796831|ref|YP_004458331.1| - 0.00012 21.7 0.5 0.00012 21.7 0.5 2.0 2 0 0 2 2 2 1 PcrB family HisG PF01634.18 gi|332796832|ref|YP_004458332.1| - 8.7e-49 165.6 0.9 1.1e-48 165.2 0.9 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|332796832|ref|YP_004458332.1| - 1e-18 67.2 0.4 1e-18 67.2 0.4 2.4 3 0 0 3 3 3 1 HisG, C-terminal domain NMT1 PF09084.11 gi|332796832|ref|YP_004458332.1| - 0.033 14.1 0.5 0.048 13.6 0.5 1.4 1 0 0 1 1 1 0 NMT1/THI5 like Aminotran_1_2 PF00155.21 gi|332796833|ref|YP_004458333.1| - 7.4e-46 157.0 0.0 8.6e-46 156.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II tRNA-synt_1 PF00133.22 gi|332796835|ref|YP_004458335.1| - 1.3e-51 175.7 0.0 5.9e-51 173.4 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|332796835|ref|YP_004458335.1| - 1.5e-28 99.7 1.1 3.7e-28 98.4 1.1 1.7 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1_2 PF13603.6 gi|332796835|ref|YP_004458335.1| - 1.3e-10 41.1 0.1 3.1e-10 39.9 0.1 1.6 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|332796835|ref|YP_004458335.1| - 7.7e-09 34.8 0.0 1.1e-07 31.0 0.0 2.7 3 0 0 3 3 3 1 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|332796835|ref|YP_004458335.1| - 1.2e-07 31.4 0.0 2.3e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain Cob_adeno_trans PF01923.18 gi|332796836|ref|YP_004458336.1| - 2e-46 158.2 0.0 2.2e-46 158.0 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase Denso_VP4 PF02336.15 gi|332796836|ref|YP_004458336.1| - 0.022 13.7 0.0 0.029 13.3 0.0 1.1 1 0 0 1 1 1 0 Capsid protein VP4 ATP_bind_3 PF01171.20 gi|332796837|ref|YP_004458337.1| - 5.2e-10 39.4 0.0 8.7e-10 38.6 0.0 1.5 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|332796837|ref|YP_004458337.1| - 0.0054 15.9 0.0 0.0093 15.1 0.0 1.4 1 1 0 1 1 1 1 NAD synthase TF_Zn_Ribbon PF08271.12 gi|332796837|ref|YP_004458337.1| - 0.07 12.7 13.4 0.22 11.0 1.2 3.5 3 1 0 3 3 3 0 TFIIB zinc-binding zf-dskA_traR PF01258.17 gi|332796837|ref|YP_004458337.1| - 1.7 8.6 7.7 8.2 6.5 0.7 3.4 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.7 gi|332796837|ref|YP_004458337.1| - 5.5 7.1 9.5 0.36 10.9 0.3 2.7 3 0 0 3 3 3 0 Double zinc ribbon DUF2318 PF10080.9 gi|332796837|ref|YP_004458337.1| - 6.9 6.9 6.3 12 6.1 0.1 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2318) C1_2 PF03107.16 gi|332796837|ref|YP_004458337.1| - 8.9 6.7 6.8 0.69 10.3 0.2 2.4 2 1 0 2 2 2 0 C1 domain DUF211 PF02680.14 gi|332796838|ref|YP_004458338.1| - 7.3e-36 122.2 2.4 8e-36 122.1 2.4 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 AdoMet_dc PF02675.15 gi|332796839|ref|YP_004458339.1| - 8.5e-34 116.0 0.0 9.5e-34 115.9 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase UbiA PF01040.18 gi|332796841|ref|YP_004458341.1| - 1.1e-39 136.2 11.1 1.4e-39 135.9 11.1 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family UPF0697 PF15117.6 gi|332796841|ref|YP_004458341.1| - 0.37 10.9 1.1 5.8 7.1 0.0 2.8 3 0 0 3 3 3 0 Uncharacterised protein family UPF0697 DUF4396 PF14342.6 gi|332796841|ref|YP_004458341.1| - 0.63 10.4 7.7 1.3 9.4 0.2 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4396) DUF3344 PF11824.8 gi|332796842|ref|YP_004458342.1| - 0.055 13.1 0.4 0.26 10.9 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3344) MMR_HSR1 PF01926.23 gi|332796843|ref|YP_004458343.1| - 1.9e-17 63.4 0.1 1.3e-14 54.3 0.0 2.2 2 0 0 2 2 2 2 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|332796843|ref|YP_004458343.1| - 1e-09 38.6 0.0 1.6e-09 37.9 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase FeoB_N PF02421.18 gi|332796843|ref|YP_004458343.1| - 2.4e-06 27.1 0.2 0.0016 18.0 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|332796843|ref|YP_004458343.1| - 8.9e-05 22.6 0.3 0.026 14.6 0.0 2.7 2 1 0 2 2 2 1 Dynamin family AAA_16 PF13191.6 gi|332796843|ref|YP_004458343.1| - 0.00028 21.3 0.0 0.00055 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Roc PF08477.13 gi|332796843|ref|YP_004458343.1| - 0.0017 18.5 0.1 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AIG1 PF04548.16 gi|332796843|ref|YP_004458343.1| - 0.0074 15.6 0.0 0.016 14.6 0.0 1.6 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.27 gi|332796843|ref|YP_004458343.1| - 0.023 14.3 0.5 0.12 11.9 0.2 2.1 1 1 1 2 2 2 0 Elongation factor Tu GTP binding domain AAA_18 PF13238.6 gi|332796843|ref|YP_004458343.1| - 0.029 14.9 0.1 0.11 13.0 0.0 2.1 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 gi|332796843|ref|YP_004458343.1| - 0.039 13.5 1.0 0.25 10.9 0.2 2.3 2 1 1 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain IIGP PF05049.13 gi|332796843|ref|YP_004458343.1| - 0.042 12.9 0.0 0.052 12.6 0.0 1.2 1 0 0 1 1 1 0 Interferon-inducible GTPase (IIGP) Ras PF00071.22 gi|332796843|ref|YP_004458343.1| - 0.047 13.3 0.1 2.2 7.9 0.0 2.2 2 0 0 2 2 2 0 Ras family MMR_HSR1_Xtn PF16897.5 gi|332796843|ref|YP_004458343.1| - 0.048 13.7 0.1 0.1 12.6 0.1 1.6 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain RNase_J_C PF17770.1 gi|332796843|ref|YP_004458343.1| - 0.11 13.5 0.8 0.98 10.5 0.0 2.8 3 1 1 4 4 3 0 Ribonuclease J C-terminal domain AAA_22 PF13401.6 gi|332796843|ref|YP_004458343.1| - 0.16 12.2 0.3 1.9 8.7 0.2 2.8 1 1 0 2 2 2 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|332796843|ref|YP_004458343.1| - 0.2 11.0 0.0 0.35 10.2 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_30 PF13604.6 gi|332796843|ref|YP_004458343.1| - 0.21 11.3 0.1 0.37 10.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain HAD_2 PF13419.6 gi|332796844|ref|YP_004458344.1| - 1.8e-13 50.9 1.8 1.6e-12 47.9 0.1 2.0 1 1 1 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|332796844|ref|YP_004458344.1| - 4.9e-13 49.3 0.2 8e-13 48.6 0.2 1.4 1 1 0 1 1 1 1 Acid Phosphatase Hydrolase PF00702.26 gi|332796844|ref|YP_004458344.1| - 5.6e-10 39.9 0.0 1.8e-07 31.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|332796844|ref|YP_004458344.1| - 3e-05 23.9 0.5 3.2e-05 23.7 0.5 1.1 1 0 0 1 1 1 1 NLI interacting factor-like phosphatase Ribosomal_L30 PF00327.20 gi|332796844|ref|YP_004458344.1| - 0.14 12.1 0.0 1.7 8.6 0.0 2.2 2 0 0 2 2 2 0 Ribosomal protein L30p/L7e HAD PF12710.7 gi|332796844|ref|YP_004458344.1| - 0.15 12.4 0.1 15 6.0 0.0 2.1 1 1 1 2 2 2 0 haloacid dehalogenase-like hydrolase TPP_enzyme_N PF02776.18 gi|332796845|ref|YP_004458345.1| - 5.5e-58 195.4 0.0 7.2e-55 185.2 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|332796845|ref|YP_004458345.1| - 1.2e-46 158.3 0.0 2.8e-46 157.1 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|332796845|ref|YP_004458345.1| - 6.4e-37 126.4 0.0 1.4e-36 125.2 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain POR_N PF01855.19 gi|332796845|ref|YP_004458345.1| - 0.019 14.7 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg ACT_5 PF13710.6 gi|332796846|ref|YP_004458346.1| - 2e-10 40.4 0.1 2.6e-10 40.0 0.1 1.2 1 0 0 1 1 1 1 ACT domain IlvN PF07991.12 gi|332796847|ref|YP_004458347.1| - 2.3e-74 248.4 0.1 3.3e-74 248.0 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|332796847|ref|YP_004458347.1| - 1.9e-50 170.9 4.1 4.2e-50 169.8 4.4 1.5 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|332796847|ref|YP_004458347.1| - 2.2e-08 34.6 0.0 5.5e-08 33.3 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|332796847|ref|YP_004458347.1| - 9.5e-07 28.3 0.0 1.9e-06 27.3 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|332796847|ref|YP_004458347.1| - 1e-06 29.0 0.0 2.2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|332796847|ref|YP_004458347.1| - 4.2e-06 26.9 0.0 8.9e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|332796847|ref|YP_004458347.1| - 0.0066 16.4 2.7 2.6 8.0 0.1 3.2 4 0 0 4 4 4 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PDH PF02153.17 gi|332796847|ref|YP_004458347.1| - 0.082 11.9 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase ApbA PF02558.16 gi|332796847|ref|YP_004458347.1| - 0.087 12.5 0.1 0.16 11.6 0.1 1.5 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Hjc PF01870.18 gi|332796848|ref|YP_004458348.1| - 2.4e-27 94.8 0.0 3.6e-27 94.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) AHJR-like PF18743.1 gi|332796848|ref|YP_004458348.1| - 0.00044 19.8 0.0 0.00091 18.8 0.0 1.5 1 1 0 1 1 1 1 REase_AHJR-like UPF0102 PF02021.17 gi|332796848|ref|YP_004458348.1| - 0.01 16.0 0.0 0.018 15.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0102 T2SSE PF00437.20 gi|332796849|ref|YP_004458349.1| - 2e-08 33.6 0.0 3.3e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA PF00004.29 gi|332796849|ref|YP_004458349.1| - 0.00053 20.4 0.1 0.013 15.9 0.0 2.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|332796849|ref|YP_004458349.1| - 0.00072 20.1 0.0 0.0076 16.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|332796849|ref|YP_004458349.1| - 0.003 17.3 0.0 0.017 14.9 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain IstB_IS21 PF01695.17 gi|332796849|ref|YP_004458349.1| - 0.0046 16.7 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein DnaB_C PF03796.15 gi|332796849|ref|YP_004458349.1| - 0.0071 15.7 0.0 0.018 14.4 0.0 1.6 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|332796849|ref|YP_004458349.1| - 0.0072 16.7 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain TsaE PF02367.17 gi|332796849|ref|YP_004458349.1| - 0.015 15.3 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|332796849|ref|YP_004458349.1| - 0.018 14.6 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|332796849|ref|YP_004458349.1| - 0.021 14.1 0.0 0.064 12.5 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin NACHT PF05729.12 gi|332796849|ref|YP_004458349.1| - 0.026 14.4 0.1 0.052 13.5 0.1 1.5 1 0 0 1 1 1 0 NACHT domain AAA_33 PF13671.6 gi|332796849|ref|YP_004458349.1| - 0.028 14.6 0.0 0.14 12.4 0.0 2.2 3 0 0 3 3 2 0 AAA domain SRP54 PF00448.22 gi|332796849|ref|YP_004458349.1| - 0.028 14.0 0.2 0.048 13.3 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.6 gi|332796849|ref|YP_004458349.1| - 0.03 14.3 0.1 0.74 9.9 0.0 2.8 2 1 1 3 3 3 0 AAA domain KH_1 PF00013.29 gi|332796849|ref|YP_004458349.1| - 0.038 13.8 2.0 0.12 12.2 0.2 2.7 3 0 0 3 3 3 0 KH domain NTPase_1 PF03266.15 gi|332796849|ref|YP_004458349.1| - 0.039 13.9 0.0 0.14 12.1 0.0 2.0 1 0 0 1 1 1 0 NTPase AAA_5 PF07728.14 gi|332796849|ref|YP_004458349.1| - 0.04 13.9 0.1 0.1 12.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.7 gi|332796849|ref|YP_004458349.1| - 0.042 12.8 0.0 0.096 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_22 PF13401.6 gi|332796849|ref|YP_004458349.1| - 0.05 13.9 0.1 0.61 10.4 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|332796849|ref|YP_004458349.1| - 0.051 13.8 0.0 0.099 12.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|332796849|ref|YP_004458349.1| - 0.054 13.2 0.4 0.15 11.8 0.1 1.9 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|332796849|ref|YP_004458349.1| - 0.059 13.1 0.1 0.1 12.4 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MeaB PF03308.16 gi|332796849|ref|YP_004458349.1| - 0.068 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_19 PF13245.6 gi|332796849|ref|YP_004458349.1| - 0.091 13.1 0.0 0.21 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|332796849|ref|YP_004458349.1| - 0.095 12.7 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Sigma54_activ_2 PF14532.6 gi|332796849|ref|YP_004458349.1| - 0.096 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|332796849|ref|YP_004458349.1| - 0.11 13.0 0.0 0.27 11.6 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_3 PF07726.11 gi|332796849|ref|YP_004458349.1| - 0.12 12.2 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.10 gi|332796849|ref|YP_004458349.1| - 0.15 11.5 0.0 0.3 10.5 0.0 1.5 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Zn_peptidase_2 PF04298.12 gi|332796849|ref|YP_004458349.1| - 0.16 11.3 0.0 0.25 10.7 0.0 1.2 1 0 0 1 1 1 0 Putative neutral zinc metallopeptidase SNO PF01174.19 gi|332796850|ref|YP_004458350.1| - 1.5e-46 158.6 0.1 1.7e-46 158.4 0.1 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|332796850|ref|YP_004458350.1| - 9.3e-11 41.7 0.4 2.8e-10 40.1 0.4 1.9 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|332796850|ref|YP_004458350.1| - 2.4e-07 30.6 0.0 2.7e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 GATase PF00117.28 gi|332796850|ref|YP_004458350.1| - 1.5e-05 24.9 0.9 0.00016 21.5 0.9 2.0 1 1 0 1 1 1 1 Glutamine amidotransferase class-I DJ-1_PfpI PF01965.24 gi|332796850|ref|YP_004458350.1| - 0.0028 17.5 0.1 0.0045 16.8 0.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family SOR_SNZ PF01680.17 gi|332796851|ref|YP_004458351.1| - 3e-100 334.2 3.2 3.9e-100 333.8 3.2 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|332796851|ref|YP_004458351.1| - 1.5e-07 31.0 3.7 5.6e-07 29.1 0.3 2.4 2 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG OMPdecase PF00215.24 gi|332796851|ref|YP_004458351.1| - 0.00031 20.4 1.1 0.21 11.1 0.1 2.6 2 1 1 3 3 3 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|332796851|ref|YP_004458351.1| - 0.003 16.8 0.0 0.45 9.7 0.0 2.3 2 0 0 2 2 2 2 Indole-3-glycerol phosphate synthase Dus PF01207.17 gi|332796851|ref|YP_004458351.1| - 0.0041 16.3 0.4 0.66 9.0 0.0 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) NanE PF04131.14 gi|332796851|ref|YP_004458351.1| - 0.0092 15.2 0.5 0.24 10.5 0.1 2.2 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.15 gi|332796851|ref|YP_004458351.1| - 0.018 14.4 2.6 0.045 13.1 0.2 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase Ribosomal_S26e PF01283.19 gi|332796852|ref|YP_004458352.1| - 4e-27 94.8 2.8 4.6e-27 94.6 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S26e Lar_restr_allev PF14354.6 gi|332796852|ref|YP_004458352.1| - 0.0087 16.4 2.3 0.084 13.3 0.1 2.1 1 1 1 2 2 2 1 Restriction alleviation protein Lar zf_UBZ PF18439.1 gi|332796852|ref|YP_004458352.1| - 0.084 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Ubiquitin-Binding Zinc Finger tRNA-synt_2b PF00587.25 gi|332796853|ref|YP_004458353.1| - 4.1e-25 88.8 0.1 1e-24 87.5 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|332796853|ref|YP_004458353.1| - 2.1e-22 79.1 0.9 5.3e-22 77.8 0.9 1.7 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.11 gi|332796853|ref|YP_004458353.1| - 2e-15 56.7 0.3 5.7e-15 55.3 0.1 1.9 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2 PF00152.20 gi|332796853|ref|YP_004458353.1| - 0.05 12.7 3.8 0.1 11.7 0.9 2.6 2 1 0 2 2 2 0 tRNA synthetases class II (D, K and N) HU-CCDC81_bac_2 PF18175.1 gi|332796853|ref|YP_004458353.1| - 0.16 11.9 0.7 9.4 6.2 0.0 3.1 3 0 0 3 3 3 0 CCDC81-like prokaryotic HU domain 2 Vfa1 PF08432.10 gi|332796853|ref|YP_004458353.1| - 4.1 7.7 7.9 0.21 11.9 0.5 2.2 2 1 0 2 2 2 0 AAA-ATPase Vps4-associated protein 1 ATP-synt_C PF00137.21 gi|332796854|ref|YP_004458354.1| - 1.9e-14 53.8 19.4 1.9e-14 53.8 19.4 1.5 2 0 0 2 2 2 1 ATP synthase subunit C Nitrate_red_gam PF02665.14 gi|332796854|ref|YP_004458354.1| - 0.13 11.8 5.9 0.19 11.3 5.9 1.3 1 1 0 1 1 1 0 Nitrate reductase gamma subunit ATP-synt_D PF01813.17 gi|332796855|ref|YP_004458355.1| - 3.9e-45 154.1 6.5 4.4e-45 153.9 6.5 1.0 1 0 0 1 1 1 1 ATP synthase subunit D GPAT_N PF14829.6 gi|332796855|ref|YP_004458355.1| - 0.0029 17.6 2.3 0.019 15.0 1.3 2.4 1 1 1 2 2 2 1 Glycerol-3-phosphate acyltransferase N-terminal DUF1759 PF03564.15 gi|332796855|ref|YP_004458355.1| - 0.018 15.0 0.1 6.8 6.6 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1759) Mistic PF11458.8 gi|332796855|ref|YP_004458355.1| - 0.15 12.0 1.5 7.1 6.7 0.0 2.9 2 1 0 2 2 2 0 Membrane-integrating protein Mistic ATP-synt_ab PF00006.25 gi|332796856|ref|YP_004458356.1| - 8.5e-64 215.1 0.0 1.2e-63 214.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|332796856|ref|YP_004458356.1| - 2.1e-12 47.4 2.8 4.7e-12 46.3 2.8 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|332796856|ref|YP_004458356.1| - 0.066 13.4 0.2 0.21 11.8 0.2 1.9 1 0 0 1 1 1 0 HAS barrel domain ATP-synt_ab PF00006.25 gi|332796857|ref|YP_004458357.1| - 8.5e-82 273.9 0.0 1.2e-81 273.4 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|332796857|ref|YP_004458357.1| - 7.9e-49 164.5 0.1 1.4e-48 163.8 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|332796857|ref|YP_004458357.1| - 3.5e-15 56.3 1.1 1.2e-14 54.5 1.1 2.0 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|332796857|ref|YP_004458357.1| - 0.011 16.0 0.3 0.043 14.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain Peptidase_M23 PF01551.22 gi|332796857|ref|YP_004458357.1| - 0.16 12.2 0.0 4.3 7.6 0.0 2.6 2 0 0 2 2 2 0 Peptidase family M23 DUF445 PF04286.12 gi|332796858|ref|YP_004458358.1| - 0.038 13.8 11.1 0.57 9.9 2.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF445) V-ATPase_G_2 PF16999.5 gi|332796858|ref|YP_004458358.1| - 0.045 14.2 1.0 0.045 14.2 1.0 1.8 2 0 0 2 2 2 0 Vacuolar (H+)-ATPase G subunit ArAE_1_C PF11728.8 gi|332796858|ref|YP_004458358.1| - 0.063 13.3 7.4 0.25 11.3 3.1 2.3 1 1 1 2 2 2 0 Putative aromatic acid exporter C-terminal domain ZnuA PF01297.17 gi|332796858|ref|YP_004458358.1| - 0.45 9.9 4.2 0.6 9.5 4.2 1.2 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic ATP-synt_B PF00430.18 gi|332796858|ref|YP_004458358.1| - 0.6 10.2 7.0 0.33 11.1 4.6 1.8 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Sds3 PF08598.11 gi|332796858|ref|YP_004458358.1| - 0.92 9.5 7.5 1.4 8.8 7.5 1.3 1 1 0 1 1 1 0 Sds3-like Arg_decarbox_C PF17944.1 gi|332796858|ref|YP_004458358.1| - 3.5 8.3 4.9 20 5.8 0.3 2.8 2 1 1 3 3 3 0 Arginine decarboxylase C-terminal helical extension YtxH PF12732.7 gi|332796858|ref|YP_004458358.1| - 6.6 7.4 6.9 47 4.6 6.1 2.4 1 1 0 1 1 1 0 YtxH-like protein HAUS6_N PF14661.6 gi|332796858|ref|YP_004458358.1| - 7.3 6.1 7.0 17 4.9 7.0 1.7 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus ATP-synt_F PF01990.17 gi|332796859|ref|YP_004458359.1| - 3.5e-09 36.9 0.1 3.9e-09 36.7 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Lactamase_B_3 PF13483.6 gi|332796859|ref|YP_004458359.1| - 0.15 11.9 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Beta-lactamase superfamily domain V_ATPase_I PF01496.19 gi|332796860|ref|YP_004458360.1| - 9.3e-37 126.4 16.5 3.7e-26 91.4 0.0 4.0 3 1 0 4 4 4 4 V-type ATPase 116kDa subunit family DUF4506 PF14958.6 gi|332796860|ref|YP_004458360.1| - 0.021 14.3 0.0 0.039 13.5 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4506) DUF4200 PF13863.6 gi|332796860|ref|YP_004458360.1| - 0.022 15.2 3.6 0.23 11.9 0.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) CdvA PF18822.1 gi|332796860|ref|YP_004458360.1| - 0.18 11.6 4.0 0.58 10.0 0.2 2.8 2 0 0 2 2 2 0 CdvA-like coiled-coil domain Seryl_tRNA_N PF02403.22 gi|332796860|ref|YP_004458360.1| - 0.27 11.5 7.1 3.6 7.9 0.7 2.6 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain tRNA-synt_1g PF09334.11 gi|332796861|ref|YP_004458361.1| - 4.8e-155 516.1 0.0 6e-155 515.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA-synt_1 PF00133.22 gi|332796861|ref|YP_004458361.1| - 2.3e-09 36.1 1.4 9.4e-05 20.8 0.0 3.1 2 1 1 3 3 3 3 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|332796861|ref|YP_004458361.1| - 0.00055 19.9 0.1 0.0011 18.9 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA DZR PF12773.7 gi|332796861|ref|YP_004458361.1| - 0.041 13.9 2.3 0.073 13.1 1.8 1.6 1 1 1 2 2 2 0 Double zinc ribbon Imm41 PF15592.6 gi|332796861|ref|YP_004458361.1| - 0.72 10.2 5.1 3.2 8.1 0.3 3.3 2 1 1 3 3 3 0 Immunity protein 41 DNA_primase_lrg PF04104.14 gi|332796862|ref|YP_004458362.1| - 6.3e-11 42.2 2.5 1.9e-05 24.2 0.4 2.9 1 1 1 2 2 2 2 Eukaryotic and archaeal DNA primase, large subunit Sulfotransfer_1 PF00685.27 gi|332796862|ref|YP_004458362.1| - 0.079 12.4 0.6 0.22 11.0 0.5 1.7 1 1 1 2 2 2 0 Sulfotransferase domain CDP-OH_P_transf PF01066.21 gi|332796863|ref|YP_004458363.1| - 1.3e-10 41.9 0.3 1.3e-10 41.9 0.3 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Methyltransf_31 PF13847.6 gi|332796865|ref|YP_004458365.1| - 4.4e-13 49.3 0.0 6.7e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|332796865|ref|YP_004458365.1| - 8.1e-11 41.9 0.2 1e-10 41.5 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|332796865|ref|YP_004458365.1| - 1.7e-10 41.5 0.0 2.4e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DOT1 PF08123.13 gi|332796865|ref|YP_004458365.1| - 8.4e-09 35.2 0.0 5e-08 32.7 0.0 1.9 1 1 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_18 PF12847.7 gi|332796865|ref|YP_004458365.1| - 8e-08 32.3 0.1 1.1e-07 31.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|332796865|ref|YP_004458365.1| - 8.7e-08 31.8 0.0 1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.17 gi|332796865|ref|YP_004458365.1| - 1.1e-06 28.2 0.1 1.3e-06 28.0 0.1 1.2 1 0 0 1 1 1 1 Putative methyltransferase MTS PF05175.14 gi|332796865|ref|YP_004458365.1| - 1.2e-06 28.2 0.0 1.7e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|332796865|ref|YP_004458365.1| - 1.2e-05 26.0 0.1 2.1e-05 25.2 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332796865|ref|YP_004458365.1| - 1.3e-05 25.7 0.0 1.9e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.16 gi|332796865|ref|YP_004458365.1| - 2.3e-05 24.2 0.3 3e-05 23.8 0.3 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_15 PF09445.10 gi|332796865|ref|YP_004458365.1| - 4.2e-05 23.2 0.0 4.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase UPF0020 PF01170.18 gi|332796865|ref|YP_004458365.1| - 0.00031 20.5 0.3 0.0048 16.6 0.3 2.1 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Ubie_methyltran PF01209.18 gi|332796865|ref|YP_004458365.1| - 0.00066 19.1 0.2 0.00086 18.7 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_2 PF00891.18 gi|332796865|ref|YP_004458365.1| - 0.00074 18.9 0.0 0.00084 18.7 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain TrmK PF04816.12 gi|332796865|ref|YP_004458365.1| - 0.0008 19.0 0.3 0.0029 17.2 0.1 1.7 1 1 1 2 2 2 1 tRNA (adenine(22)-N(1))-methyltransferase N6_Mtase PF02384.16 gi|332796865|ref|YP_004458365.1| - 0.0014 18.0 0.0 0.002 17.4 0.0 1.3 1 0 0 1 1 1 1 N-6 DNA Methylase PCMT PF01135.19 gi|332796865|ref|YP_004458365.1| - 0.0019 18.0 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|332796865|ref|YP_004458365.1| - 0.0041 16.8 0.1 0.0047 16.6 0.1 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_23 PF13489.6 gi|332796865|ref|YP_004458365.1| - 0.005 16.7 0.0 0.0072 16.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|332796865|ref|YP_004458365.1| - 0.0088 15.8 0.0 0.014 15.1 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_32 PF13679.6 gi|332796865|ref|YP_004458365.1| - 0.013 15.5 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.14 gi|332796865|ref|YP_004458365.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Tellurite resistance protein TehB EF-hand_14 PF17959.1 gi|332796865|ref|YP_004458365.1| - 0.021 15.1 0.0 0.028 14.7 0.0 1.3 1 1 0 1 1 1 0 EF-hand domain Methyltransf_20 PF12147.8 gi|332796865|ref|YP_004458365.1| - 0.084 12.0 0.1 0.1 11.7 0.1 1.1 1 0 0 1 1 1 0 Putative methyltransferase DUF3419 PF11899.8 gi|332796865|ref|YP_004458365.1| - 0.094 11.9 0.0 0.11 11.6 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3419) Methyltransf_33 PF10017.9 gi|332796865|ref|YP_004458365.1| - 0.16 11.1 0.0 0.2 10.8 0.0 1.1 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent DUF2286 PF10051.9 gi|332796866|ref|YP_004458366.1| - 8.3e-53 177.8 4.7 9.8e-53 177.6 4.7 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2286) DUF1126 PF06565.12 gi|332796866|ref|YP_004458366.1| - 0.011 15.5 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 DUF1126 PH-like domain DNA_pol_B PF00136.21 gi|332796867|ref|YP_004458367.1| - 1.9e-50 171.9 3.8 3.2e-50 171.2 3.8 1.2 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|332796867|ref|YP_004458367.1| - 7.2e-26 91.1 0.7 7.2e-26 91.1 0.7 1.7 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.6 gi|332796867|ref|YP_004458367.1| - 1.6e-06 28.2 0.1 3.4e-05 23.9 0.1 2.8 2 0 0 2 2 2 1 RNase_H superfamily DNA_pol_B_exo2 PF10108.9 gi|332796867|ref|YP_004458367.1| - 4.1e-06 26.6 0.0 1.1e-05 25.2 0.0 1.7 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF3480 PF11979.8 gi|332796867|ref|YP_004458367.1| - 0.026 13.5 0.1 0.13 11.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3480) ACT_6 PF13740.6 gi|332796867|ref|YP_004458367.1| - 0.059 13.4 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 ACT domain DUF2312 PF10073.9 gi|332796867|ref|YP_004458367.1| - 0.32 10.7 2.2 0.35 10.5 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) Band_7 PF01145.25 gi|332796868|ref|YP_004458368.1| - 0.063 13.3 1.5 1.5 8.8 0.0 2.5 2 0 0 2 2 2 0 SPFH domain / Band 7 family DivIVA PF05103.13 gi|332796868|ref|YP_004458368.1| - 0.13 12.3 0.7 0.21 11.7 0.7 1.2 1 0 0 1 1 1 0 DivIVA protein Syntaxin-6_N PF09177.11 gi|332796868|ref|YP_004458368.1| - 0.54 10.8 1.7 1.1 9.8 1.7 1.5 1 0 0 1 1 1 0 Syntaxin 6, N-terminal HALZ PF02183.18 gi|332796868|ref|YP_004458368.1| - 7.5 6.9 6.6 0.51 10.6 1.2 1.8 2 0 0 2 2 2 0 Homeobox associated leucine zipper MCC-bdg_PDZ PF10506.9 gi|332796868|ref|YP_004458368.1| - 8.1 6.5 8.9 8.2 6.5 4.9 2.2 1 1 1 2 2 2 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Inos-1-P_synth PF01658.17 gi|332796869|ref|YP_004458369.1| - 1.8e-21 76.4 1.4 5e-21 75.0 0.1 2.2 2 1 0 2 2 2 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|332796869|ref|YP_004458369.1| - 0.0003 20.3 0.1 0.032 13.6 0.0 2.3 2 0 0 2 2 2 2 Myo-inositol-1-phosphate synthase Proton_antipo_M PF00361.20 gi|332796870|ref|YP_004458370.1| - 3.8e-42 144.5 27.0 3.8e-42 144.5 27.0 2.0 1 1 0 2 2 2 1 Proton-conducting membrane transporter ARL6IP6 PF15062.6 gi|332796870|ref|YP_004458370.1| - 3.8 7.7 7.2 4.1 7.6 0.4 2.9 2 1 0 2 2 2 0 Haemopoietic lineage transmembrane helix Proton_antipo_M PF00361.20 gi|332796871|ref|YP_004458371.1| - 5.4e-72 242.5 77.9 2.3e-47 161.6 27.0 4.8 3 1 1 4 4 4 3 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|332796871|ref|YP_004458371.1| - 4.8e-11 42.6 12.1 1.6e-06 28.1 4.3 4.6 2 0 0 2 2 2 2 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|332796872|ref|YP_004458372.1| - 8.2e-12 44.7 8.0 1.2e-11 44.2 8.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.16 gi|332796872|ref|YP_004458372.1| - 0.0062 15.9 5.2 0.0072 15.7 5.2 1.2 1 0 0 1 1 1 1 High-affinity nickel-transport protein TspO_MBR PF03073.15 gi|332796872|ref|YP_004458372.1| - 0.04 14.0 2.8 0.047 13.7 2.8 1.1 1 0 0 1 1 1 0 TspO/MBR family ZYG-11_interact PF05884.12 gi|332796872|ref|YP_004458372.1| - 0.61 9.5 8.2 0.63 9.4 8.2 1.1 1 0 0 1 1 1 0 Interactor of ZYG-11 Oxidored_q3 PF00499.20 gi|332796873|ref|YP_004458373.1| - 3.4e-14 52.8 24.0 3.4e-14 52.8 24.0 1.5 2 0 0 2 2 2 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Viral_protease PF08715.10 gi|332796873|ref|YP_004458373.1| - 0.11 11.9 0.1 0.15 11.4 0.1 1.1 1 0 0 1 1 1 0 Papain like viral protease DUF981 PF06168.11 gi|332796873|ref|YP_004458373.1| - 6.3 6.7 22.1 0.42 10.5 17.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF981) Fer4 PF00037.27 gi|332796874|ref|YP_004458374.1| - 8.7e-14 50.7 16.6 1.6e-08 34.0 3.4 2.7 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332796874|ref|YP_004458374.1| - 6.7e-11 42.2 6.9 1.3e-10 41.2 6.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332796874|ref|YP_004458374.1| - 5.1e-10 39.8 8.9 1e-09 38.8 8.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332796874|ref|YP_004458374.1| - 8.8e-10 38.6 16.3 1.6e-07 31.4 9.2 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332796874|ref|YP_004458374.1| - 2.2e-09 38.1 4.6 0.0009 20.1 0.1 2.5 2 1 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|332796874|ref|YP_004458374.1| - 2.8e-08 33.8 7.7 4.4e-08 33.1 7.7 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332796874|ref|YP_004458374.1| - 7.8e-08 32.1 15.1 0.00032 20.6 2.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|332796874|ref|YP_004458374.1| - 2.5e-06 27.6 9.0 0.0078 16.6 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332796874|ref|YP_004458374.1| - 8.5e-06 25.6 10.7 0.009 16.1 1.4 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|332796874|ref|YP_004458374.1| - 0.00095 19.6 8.7 0.049 14.1 0.5 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332796874|ref|YP_004458374.1| - 0.0013 19.3 7.8 0.2 12.2 1.4 2.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332796874|ref|YP_004458374.1| - 0.0023 18.6 5.8 0.42 11.4 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_3 PF12798.7 gi|332796874|ref|YP_004458374.1| - 0.0072 17.2 16.2 0.077 14.0 3.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|332796874|ref|YP_004458374.1| - 0.073 13.6 12.6 0.44 11.1 4.0 2.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|332796874|ref|YP_004458374.1| - 0.18 12.0 10.9 0.15 12.2 1.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332796874|ref|YP_004458374.1| - 0.37 11.7 11.6 2.8 8.8 1.4 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain NADHdh PF00146.21 gi|332796875|ref|YP_004458375.1| - 5.1e-78 262.4 24.2 6.3e-78 262.1 24.2 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Complex1_49kDa PF00346.19 gi|332796876|ref|YP_004458376.1| - 2e-95 319.0 0.0 2.7e-95 318.5 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ArgoL1 PF08699.10 gi|332796876|ref|YP_004458376.1| - 0.038 13.6 0.0 0.25 11.0 0.0 2.2 2 0 0 2 2 2 0 Argonaute linker 1 domain Complex1_30kDa PF00329.19 gi|332796877|ref|YP_004458377.1| - 1.6e-33 115.9 0.0 2.1e-33 115.5 0.0 1.1 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Glyco_trans_4_2 PF13477.6 gi|332796877|ref|YP_004458377.1| - 0.096 12.7 0.3 0.32 11.0 0.1 1.8 1 1 1 2 2 2 0 Glycosyl transferase 4-like Oxidored_q4 PF00507.19 gi|332796878|ref|YP_004458378.1| - 1.8e-07 31.2 1.6 2.6e-07 30.7 1.6 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Thy1 PF02511.15 gi|332796879|ref|YP_004458379.1| - 7.9e-65 218.2 1.7 9.5e-65 217.9 1.7 1.1 1 0 0 1 1 1 1 Thymidylate synthase complementing protein CCDC53 PF10152.9 gi|332796879|ref|YP_004458379.1| - 0.12 12.8 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex DUF2175 PF09943.9 gi|332796880|ref|YP_004458380.1| - 3.9e-34 116.8 6.2 4.4e-34 116.7 6.2 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2175) Vps39_2 PF10367.9 gi|332796880|ref|YP_004458380.1| - 0.0038 17.6 2.3 0.016 15.6 0.1 2.1 2 1 0 2 2 2 1 Vacuolar sorting protein 39 domain 2 DUF1978 PF09321.10 gi|332796880|ref|YP_004458380.1| - 0.0073 15.7 4.5 0.011 15.0 4.5 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF1978) DUF3231 PF11553.8 gi|332796880|ref|YP_004458380.1| - 0.0075 15.9 0.5 0.0097 15.5 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3231) Ca_bind_SSO6904 PF18249.1 gi|332796880|ref|YP_004458380.1| - 0.016 15.5 2.1 3.8 7.9 0.3 2.2 1 1 1 2 2 2 0 Calcium binding protein SSO6904 DUF3283 PF11686.8 gi|332796880|ref|YP_004458380.1| - 0.11 12.3 3.5 2.4 8.1 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3283) Glyco_hydro_88 PF07470.13 gi|332796881|ref|YP_004458381.1| - 0.013 14.6 0.1 0.026 13.6 0.1 1.4 1 1 0 1 1 1 0 Glycosyl Hydrolase Family 88 DUF364 PF04016.12 gi|332796882|ref|YP_004458382.1| - 4.1e-29 101.1 0.0 6.1e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Putative heavy-metal chelation DUF4213 PF13938.6 gi|332796882|ref|YP_004458382.1| - 3.2e-14 52.9 0.0 6.1e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 Putative heavy-metal chelation NTP_transferase PF00483.23 gi|332796883|ref|YP_004458383.1| - 5e-36 124.5 0.0 6.9e-36 124.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|332796883|ref|YP_004458383.1| - 8.4e-11 42.5 0.0 1.1e-10 42.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|332796883|ref|YP_004458383.1| - 2.1e-07 30.4 4.8 0.00024 20.7 0.6 2.8 2 0 0 2 2 2 2 Bacterial transferase hexapeptide (six repeats) Fucokinase PF07959.12 gi|332796883|ref|YP_004458383.1| - 0.074 12.0 0.1 0.16 10.9 0.1 1.4 1 1 0 1 1 1 0 L-fucokinase Hexapep_2 PF14602.6 gi|332796883|ref|YP_004458383.1| - 0.53 10.1 6.2 0.81 9.5 1.5 3.2 2 1 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase Sod_Fe_C PF02777.18 gi|332796884|ref|YP_004458384.1| - 2.3e-31 108.0 0.9 4e-31 107.2 0.9 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.22 gi|332796884|ref|YP_004458384.1| - 4.9e-28 97.4 0.1 4.9e-28 97.4 0.1 2.6 3 0 0 3 3 3 1 Iron/manganese superoxide dismutases, alpha-hairpin domain LytR_cpsA_psr PF03816.14 gi|332796885|ref|YP_004458385.1| - 0.063 13.4 0.4 0.66 10.1 0.5 2.1 1 1 1 2 2 2 0 Cell envelope-related transcriptional attenuator domain Cor1 PF04803.12 gi|332796885|ref|YP_004458385.1| - 3.1 8.0 10.9 11 6.2 4.7 2.9 2 1 0 2 2 2 0 Cor1/Xlr/Xmr conserved region TusA PF01206.17 gi|332796886|ref|YP_004458386.1| - 0.0002 21.1 0.0 0.00023 20.9 0.0 1.3 1 1 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|332796886|ref|YP_004458386.1| - 0.057 13.3 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2249) Thioredoxin_3 PF13192.6 gi|332796887|ref|YP_004458387.1| - 2.1e-10 40.5 0.0 5.6e-10 39.1 0.0 1.8 1 0 0 1 1 1 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|332796887|ref|YP_004458387.1| - 0.001 19.2 0.0 0.0025 18.0 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin Thioredoxin_4 PF13462.6 gi|332796887|ref|YP_004458387.1| - 0.048 13.8 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.6 gi|332796887|ref|YP_004458387.1| - 0.12 12.8 0.3 9.1 6.8 0.0 2.6 1 1 1 2 2 2 0 Thioredoxin-like domain Helicase_C_2 PF13307.6 gi|332796888|ref|YP_004458388.1| - 1.9e-26 93.2 0.1 2.2e-25 89.8 0.0 2.4 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|332796888|ref|YP_004458388.1| - 3.9e-15 55.9 0.0 2e-14 53.6 0.0 2.1 1 1 1 2 2 2 1 DEAD_2 DEAD PF00270.29 gi|332796888|ref|YP_004458388.1| - 0.0023 17.7 0.7 6.4 6.5 0.0 3.7 3 1 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|332796888|ref|YP_004458388.1| - 0.0031 17.5 1.2 0.045 13.7 0.0 2.9 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit ThiC_Rad_SAM PF01964.18 gi|332796889|ref|YP_004458389.1| - 1.2e-174 581.0 0.0 1.5e-174 580.7 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Rieske PF00355.26 gi|332796890|ref|YP_004458390.1| - 1.1e-12 47.7 0.1 1.3e-12 47.5 0.1 1.1 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|332796890|ref|YP_004458390.1| - 0.00037 20.4 0.0 0.00057 19.8 0.0 1.3 1 1 0 1 1 1 1 Rieske-like [2Fe-2S] domain DHquinase_I PF01487.15 gi|332796891|ref|YP_004458391.1| - 1.8e-16 61.1 0.0 2.6e-16 60.6 0.0 1.2 1 0 0 1 1 1 1 Type I 3-dehydroquinase EPSP_synthase PF00275.20 gi|332796892|ref|YP_004458392.1| - 4.1e-58 197.0 0.0 5.8e-56 189.9 0.0 2.0 1 1 1 2 2 2 2 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Holin_SPP1 PF04688.13 gi|332796892|ref|YP_004458392.1| - 0.0071 16.5 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 SPP1 phage holin GHMP_kinases_N PF00288.26 gi|332796893|ref|YP_004458393.1| - 2.3e-08 34.1 0.4 5e-08 33.1 0.2 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|332796893|ref|YP_004458393.1| - 0.0002 21.7 0.0 0.00035 20.9 0.0 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal Chorismate_synt PF01264.21 gi|332796894|ref|YP_004458394.1| - 5.8e-128 426.2 0.0 6.7e-128 426.0 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase Shikimate_dh_N PF08501.11 gi|332796895|ref|YP_004458395.1| - 4.4e-27 94.2 0.0 1.2e-26 92.8 0.0 1.8 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|332796895|ref|YP_004458395.1| - 1.4e-06 28.4 0.0 2.2e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|332796895|ref|YP_004458395.1| - 0.0042 16.8 0.0 0.0075 16.0 0.0 1.4 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain DHQ_synthase PF01761.20 gi|332796896|ref|YP_004458396.1| - 1.8e-92 309.2 0.0 2.2e-92 309.0 0.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase Fe-ADH_2 PF13685.6 gi|332796896|ref|YP_004458396.1| - 3.3e-09 36.8 0.0 5.9e-09 36.0 0.0 1.4 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|332796896|ref|YP_004458396.1| - 9.1e-06 24.7 0.0 0.00014 20.8 0.0 2.1 2 0 0 2 2 2 1 Iron-containing alcohol dehydrogenase DAHP_synth_1 PF00793.20 gi|332796897|ref|YP_004458397.1| - 5.7e-69 232.0 0.0 7.3e-69 231.7 0.0 1.1 1 0 0 1 1 1 1 DAHP synthetase I family NeuB PF03102.14 gi|332796897|ref|YP_004458397.1| - 3.4e-11 43.1 0.0 1.8e-07 30.9 0.0 2.4 3 0 0 3 3 3 2 NeuB family PDH PF02153.17 gi|332796898|ref|YP_004458398.1| - 5.5e-20 71.5 0.0 8.9e-20 70.8 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase CM_2 PF01817.21 gi|332796898|ref|YP_004458398.1| - 1.7e-19 69.9 0.9 1.7e-19 69.9 0.9 2.4 3 0 0 3 3 3 1 Chorismate mutase type II F420_oxidored PF03807.17 gi|332796898|ref|YP_004458398.1| - 1.4e-09 38.4 0.0 4.2e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|332796898|ref|YP_004458398.1| - 2.6e-06 27.1 0.0 1e-05 25.2 0.0 2.0 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|332796898|ref|YP_004458398.1| - 1.3e-05 25.3 0.0 3.8e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|332796898|ref|YP_004458398.1| - 0.00046 19.6 0.0 0.00075 18.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|332796898|ref|YP_004458398.1| - 0.0011 19.1 0.0 0.0022 18.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|332796898|ref|YP_004458398.1| - 0.0085 16.3 0.0 0.019 15.2 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain FlaC_arch PF05377.11 gi|332796898|ref|YP_004458398.1| - 0.077 13.4 0.6 0.077 13.4 0.6 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) AdoHcyase_NAD PF00670.21 gi|332796898|ref|YP_004458398.1| - 0.13 12.3 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain PglD_N PF17836.1 gi|332796898|ref|YP_004458398.1| - 0.17 12.5 0.8 1.1 10.0 0.0 2.7 3 0 0 3 3 3 0 PglD N-terminal domain Seryl_tRNA_N PF02403.22 gi|332796898|ref|YP_004458398.1| - 0.27 11.5 5.9 1.4 9.2 3.1 2.6 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Transket_pyr PF02779.24 gi|332796899|ref|YP_004458399.1| - 1.5e-38 132.3 0.0 2.3e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|332796899|ref|YP_004458399.1| - 2.3e-30 105.0 0.0 4.4e-30 104.1 0.0 1.5 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|332796899|ref|YP_004458399.1| - 0.024 14.9 0.1 0.048 14.0 0.1 1.5 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_N PF00456.21 gi|332796900|ref|YP_004458400.1| - 6.3e-32 110.8 0.0 1.1e-31 110.1 0.0 1.3 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain E1_dh PF00676.20 gi|332796900|ref|YP_004458400.1| - 5.7e-09 35.3 0.0 1e-08 34.5 0.0 1.4 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|332796900|ref|YP_004458400.1| - 6.4e-08 32.1 0.1 1.2e-05 24.7 0.2 2.1 1 1 1 2 2 2 2 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|332796900|ref|YP_004458400.1| - 1.3e-06 28.3 1.1 1.6e-05 24.8 1.1 2.1 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain XFP_N PF09364.10 gi|332796900|ref|YP_004458400.1| - 2.2e-05 23.5 0.1 3.8e-05 22.7 0.1 1.4 1 1 0 1 1 1 1 XFP N-terminal domain ThiF PF00899.21 gi|332796901|ref|YP_004458401.1| - 1.1e-56 191.9 0.2 1.4e-56 191.6 0.2 1.0 1 0 0 1 1 1 1 ThiF family TrkA_N PF02254.18 gi|332796901|ref|YP_004458401.1| - 0.022 15.0 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|332796901|ref|YP_004458401.1| - 0.043 14.1 1.0 0.77 10.0 1.0 2.6 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain EndIII_4Fe-2S PF10576.9 gi|332796901|ref|YP_004458401.1| - 0.053 13.9 0.3 0.053 13.9 0.3 2.5 2 0 0 2 2 2 0 Iron-sulfur binding domain of endonuclease III Shikimate_DH PF01488.20 gi|332796901|ref|YP_004458401.1| - 0.08 13.0 1.1 0.32 11.1 0.2 2.3 2 1 1 3 3 3 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.19 gi|332796901|ref|YP_004458401.1| - 0.17 11.1 0.0 0.23 10.7 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain LPG_synthase_TM PF03706.13 gi|332796902|ref|YP_004458402.1| - 2.6e-10 40.3 5.7 3.8e-10 39.8 5.7 1.1 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region DUF2674 PF10879.8 gi|332796902|ref|YP_004458402.1| - 0.15 11.6 0.4 0.36 10.4 0.4 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2674) TAL_FSA PF00923.19 gi|332796903|ref|YP_004458403.1| - 0.058 12.7 0.2 0.1 12.0 0.2 1.3 1 0 0 1 1 1 0 Transaldolase/Fructose-6-phosphate aldolase Pcc1 PF09341.10 gi|332796904|ref|YP_004458404.1| - 0.0064 16.6 0.0 0.0074 16.4 0.0 1.1 1 0 0 1 1 1 1 Transcription factor Pcc1 Ribosomal_L16 PF00252.18 gi|332796905|ref|YP_004458405.1| - 8e-32 110.0 0.1 9.1e-32 109.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e Diphthamide_syn PF01866.17 gi|332796906|ref|YP_004458406.1| - 3e-80 269.9 0.0 3.7e-80 269.6 0.0 1.1 1 0 0 1 1 1 1 Putative diphthamide synthesis protein B12-binding PF02310.19 gi|332796906|ref|YP_004458406.1| - 0.13 12.3 0.0 8.1 6.5 0.0 2.9 3 0 0 3 3 3 0 B12 binding domain Vip3A_N PF12495.8 gi|332796906|ref|YP_004458406.1| - 0.21 11.5 1.5 0.39 10.6 1.5 1.4 1 0 0 1 1 1 0 Vegetative insecticide protein 3A N terminal ECR1_N PF14382.6 gi|332796907|ref|YP_004458407.1| - 3.5e-08 33.1 0.0 6.7e-08 32.2 0.0 1.5 1 0 0 1 1 1 1 Exosome complex exonuclease RRP4 N-terminal region S1 PF00575.23 gi|332796907|ref|YP_004458407.1| - 0.0013 19.0 0.3 0.0033 17.7 0.3 1.7 1 1 0 1 1 1 1 S1 RNA binding domain OrfB_Zn_ribbon PF07282.11 gi|332796907|ref|YP_004458407.1| - 0.0091 15.9 1.3 0.016 15.1 1.3 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2318 PF10080.9 gi|332796907|ref|YP_004458407.1| - 0.032 14.3 0.3 0.054 13.6 0.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 gi|332796907|ref|YP_004458407.1| - 0.091 12.2 1.7 0.43 10.1 1.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain RNA_pol_L_2 PF13656.6 gi|332796908|ref|YP_004458408.1| - 2.3e-19 68.9 0.0 2.8e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|332796908|ref|YP_004458408.1| - 7.6e-07 28.5 0.1 1.8e-06 27.2 0.1 1.6 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain TFIIS_C PF01096.18 gi|332796909|ref|YP_004458409.1| - 3.4e-22 78.0 8.6 3.2e-21 74.9 2.4 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.7 gi|332796909|ref|YP_004458409.1| - 3.3e-06 27.0 3.5 0.00041 20.3 1.6 2.4 2 1 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|332796909|ref|YP_004458409.1| - 5.3e-05 22.6 1.5 0.0014 18.1 0.1 2.6 2 1 0 2 2 2 1 TFIIB zinc-binding DUF2387 PF09526.10 gi|332796909|ref|YP_004458409.1| - 0.00017 21.7 5.5 0.072 13.3 0.6 2.2 1 1 1 2 2 2 2 Probable metal-binding protein (DUF2387) RNA_POL_M_15KD PF02150.16 gi|332796909|ref|YP_004458409.1| - 0.0013 18.5 8.1 0.0045 16.8 0.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zinc_ribbon_10 PF10058.9 gi|332796909|ref|YP_004458409.1| - 0.0017 18.0 6.8 0.074 12.8 2.4 2.7 2 1 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein zf-CHY PF05495.12 gi|332796909|ref|YP_004458409.1| - 0.0056 17.1 3.1 0.021 15.3 3.1 1.9 1 1 0 1 1 1 1 CHY zinc finger zf-Mss51 PF13824.6 gi|332796909|ref|YP_004458409.1| - 0.0064 16.6 0.9 0.39 10.9 0.2 2.2 2 0 0 2 2 2 1 Zinc-finger of mitochondrial splicing suppressor 51 zf-UBP PF02148.19 gi|332796909|ref|YP_004458409.1| - 0.01 16.2 2.3 0.23 11.8 0.3 2.2 1 1 1 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.10 gi|332796909|ref|YP_004458409.1| - 0.015 15.4 9.8 1.4 9.1 0.1 3.4 3 1 1 4 4 4 0 Zinc ribbon domain Baculo_LEF5_C PF11792.8 gi|332796909|ref|YP_004458409.1| - 0.023 14.3 0.1 0.023 14.3 0.1 2.2 2 0 0 2 2 2 0 Baculoviridae late expression factor 5 C-terminal domain HalOD2 PF18547.1 gi|332796909|ref|YP_004458409.1| - 0.025 14.5 2.3 2.7 8.0 0.1 2.9 3 0 0 3 3 3 0 Halobacterial output domain 2 UCH_1 PF13423.6 gi|332796909|ref|YP_004458409.1| - 0.045 13.3 1.2 0.054 13.1 1.2 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase Zn_Tnp_IS91 PF14319.6 gi|332796909|ref|YP_004458409.1| - 0.067 13.2 3.9 12 6.0 0.1 3.0 2 1 1 3 3 3 0 Transposase zinc-binding domain C1_2 PF03107.16 gi|332796909|ref|YP_004458409.1| - 0.067 13.5 2.4 6.5 7.1 0.2 2.8 3 0 0 3 3 3 0 C1 domain DUF35_N PF12172.8 gi|332796909|ref|YP_004458409.1| - 0.12 12.3 4.3 1.8 8.6 0.1 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Desulfoferrod_N PF06397.12 gi|332796909|ref|YP_004458409.1| - 0.13 11.9 9.9 1 9.1 0.1 2.5 3 0 0 3 3 2 0 Desulfoferrodoxin, N-terminal domain Terminase_GpA PF05876.12 gi|332796909|ref|YP_004458409.1| - 0.17 10.4 2.1 0.099 11.2 0.7 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) eIF-5_eIF-2B PF01873.17 gi|332796909|ref|YP_004458409.1| - 0.21 11.4 5.1 0.064 13.1 0.9 2.1 1 1 0 2 2 2 0 Domain found in IF2B/IF5 Ribosomal_S27e PF01667.17 gi|332796909|ref|YP_004458409.1| - 0.27 11.0 5.3 3.9 7.3 2.0 3.0 2 1 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_4 PF13717.6 gi|332796909|ref|YP_004458409.1| - 0.28 11.1 0.4 0.28 11.1 0.4 3.4 3 1 0 3 3 3 0 zinc-ribbon domain DUF3797 PF12677.7 gi|332796909|ref|YP_004458409.1| - 0.38 10.7 0.4 0.38 10.7 0.4 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF3797) ZZ PF00569.17 gi|332796909|ref|YP_004458409.1| - 0.53 10.1 6.0 15 5.5 0.1 3.1 3 0 0 3 3 3 0 Zinc finger, ZZ type zinc_ribbon_2 PF13240.6 gi|332796909|ref|YP_004458409.1| - 0.57 10.0 12.6 6.9 6.5 0.3 3.3 3 0 0 3 3 3 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|332796909|ref|YP_004458409.1| - 0.61 10.0 9.8 4.7 7.2 0.1 3.0 2 1 0 2 2 2 0 SprT-like zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332796909|ref|YP_004458409.1| - 0.65 10.0 6.6 2.6 8.0 1.6 2.8 1 1 3 4 4 4 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|332796909|ref|YP_004458409.1| - 1.1 9.1 9.6 1.3 8.8 0.3 3.1 3 0 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-HIT PF04438.16 gi|332796909|ref|YP_004458409.1| - 1.5 8.7 11.7 8.7 6.3 0.8 3.1 3 0 0 3 3 3 0 HIT zinc finger Mut7-C PF01927.16 gi|332796909|ref|YP_004458409.1| - 2 8.5 7.6 1.5e+02 2.4 7.6 2.2 1 1 0 1 1 1 0 Mut7-C RNAse domain zf-ribbon_3 PF13248.6 gi|332796909|ref|YP_004458409.1| - 3.1 7.3 11.1 3.3 7.3 0.5 3.2 3 0 0 3 3 3 0 zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|332796909|ref|YP_004458409.1| - 5.4 7.6 11.9 7 7.3 0.6 3.1 3 0 0 3 3 3 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|332796909|ref|YP_004458409.1| - 6 6.5 7.7 9.4 5.9 0.3 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|332796909|ref|YP_004458409.1| - 8.7 6.2 10.9 11 5.8 0.2 3.2 3 0 0 3 3 3 0 A2L zinc ribbon domain TetR_C_23 PF17931.1 gi|332796911|ref|YP_004458411.1| - 0.028 14.6 0.3 0.028 14.6 0.3 1.0 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain ParE_toxin PF05016.15 gi|332796912|ref|YP_004458412.1| - 5.2e-05 23.8 0.0 5.8e-05 23.6 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Fic PF02661.18 gi|332796914|ref|YP_004458414.1| - 5.3e-09 36.8 0.0 1.6e-08 35.3 0.0 1.9 1 1 0 1 1 1 1 Fic/DOC family DUF1841 PF08897.11 gi|332796915|ref|YP_004458415.1| - 0.022 14.8 0.2 0.029 14.4 0.1 1.2 1 1 0 1 1 1 0 Domain of unknown function (DUF1841) DUF3921 PF13060.6 gi|332796915|ref|YP_004458415.1| - 0.05 13.6 0.1 0.076 13.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) GXGXG PF01493.19 gi|332796917|ref|YP_004458417.1| - 5.8e-22 78.2 10.2 1.1e-21 77.3 10.2 1.3 1 0 0 1 1 1 1 GXGXG motif GATase_6 PF13522.6 gi|332796917|ref|YP_004458417.1| - 1.1e-05 25.7 0.0 0.0001 22.5 0.0 2.2 1 1 0 1 1 1 1 Glutamine amidotransferase domain Oxidored_nitro PF00148.19 gi|332796917|ref|YP_004458417.1| - 0.038 12.7 0.1 3.3 6.3 0.0 2.6 3 0 0 3 3 3 0 Nitrogenase component 1 type Oxidoreductase Gp-FAR-1 PF05823.12 gi|332796917|ref|YP_004458417.1| - 0.07 13.5 5.9 0.088 13.2 0.8 2.4 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) Sec1 PF00995.23 gi|332796917|ref|YP_004458417.1| - 0.083 12.1 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Sec1 family GATase_7 PF13537.6 gi|332796917|ref|YP_004458417.1| - 0.11 12.4 0.0 0.94 9.4 0.0 2.3 1 1 0 1 1 1 0 Glutamine amidotransferase domain VAPB_antitox PF02697.14 gi|332796917|ref|YP_004458417.1| - 0.19 12.5 2.5 0.59 10.9 2.5 1.9 1 0 0 1 1 1 0 Putative antitoxin Glu_synthase PF01645.17 gi|332796918|ref|YP_004458418.1| - 6.4e-105 351.3 3.0 8.6e-99 331.1 0.7 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|332796918|ref|YP_004458418.1| - 3.8e-24 85.6 0.0 7.4e-08 32.2 0.0 3.2 3 0 0 3 3 3 3 Glutamate synthase central domain FMN_dh PF01070.18 gi|332796918|ref|YP_004458418.1| - 2.6e-10 39.9 8.5 3.3e-06 26.4 3.8 3.2 3 0 0 3 3 3 2 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|332796918|ref|YP_004458418.1| - 0.00062 18.9 9.2 0.0024 17.0 4.0 2.6 2 1 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|332796918|ref|YP_004458418.1| - 0.00071 19.1 2.9 0.00071 19.1 2.9 1.7 2 0 0 2 2 2 1 Nitronate monooxygenase NanE PF04131.14 gi|332796918|ref|YP_004458418.1| - 0.016 14.4 0.2 0.035 13.3 0.2 1.5 1 0 0 1 1 1 0 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|332796918|ref|YP_004458418.1| - 0.043 13.0 2.2 0.11 11.7 2.2 1.7 1 1 0 1 1 1 0 Dihydroorotate dehydrogenase tRNA_NucTransf2 PF09249.11 gi|332796920|ref|YP_004458420.1| - 9.4e-43 145.1 0.0 1.7e-42 144.2 0.0 1.4 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|332796920|ref|YP_004458420.1| - 3.4e-16 59.3 0.6 7.9e-16 58.1 0.1 1.9 2 0 0 2 2 2 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|332796920|ref|YP_004458420.1| - 0.00018 21.7 0.0 0.00035 20.8 0.0 1.5 1 0 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain BTRD1 PF17660.1 gi|332796920|ref|YP_004458420.1| - 0.0048 16.7 0.0 0.0081 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial tandem repeat domain 1 DNA_pol_B_palm PF14792.6 gi|332796920|ref|YP_004458420.1| - 0.023 14.9 0.0 0.058 13.6 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase beta palm Polbeta PF18765.1 gi|332796920|ref|YP_004458420.1| - 0.043 13.9 0.0 0.15 12.2 0.0 2.0 1 0 0 1 1 1 0 Polymerase beta, Nucleotidyltransferase LigT_PEase PF02834.16 gi|332796921|ref|YP_004458421.1| - 1.2e-26 92.7 0.0 1e-14 54.5 0.0 2.2 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|332796921|ref|YP_004458421.1| - 2.6e-12 46.9 0.0 3e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|332796921|ref|YP_004458421.1| - 2.9e-09 37.1 0.0 1.1e-08 35.2 0.0 1.8 1 1 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain Corona_NS2A PF05213.12 gi|332796921|ref|YP_004458421.1| - 0.036 13.4 0.0 0.063 12.6 0.0 1.4 1 1 0 1 1 1 0 Coronavirus NS2A protein AAA_17 PF13207.6 gi|332796922|ref|YP_004458422.1| - 5.2e-10 39.9 0.0 8.5e-10 39.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|332796922|ref|YP_004458422.1| - 1.2e-06 29.1 0.0 2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|332796922|ref|YP_004458422.1| - 7.8e-05 22.8 0.0 8.3e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|332796922|ref|YP_004458422.1| - 0.00017 21.8 0.0 0.00047 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain CoaE PF01121.20 gi|332796922|ref|YP_004458422.1| - 0.013 15.1 0.0 1.9 8.2 0.0 2.2 1 1 1 2 2 2 0 Dephospho-CoA kinase Flu_B_M2 PF04772.12 gi|332796922|ref|YP_004458422.1| - 0.059 13.6 0.4 4.7 7.5 0.0 2.2 1 1 1 2 2 2 0 Influenza B matrix protein 2 (BM2) RNA_binding PF01877.17 gi|332796923|ref|YP_004458423.1| - 7.2e-20 71.4 0.4 8.8e-20 71.2 0.4 1.1 1 0 0 1 1 1 1 RNA binding SelB-wing_3 PF09107.11 gi|332796923|ref|YP_004458423.1| - 0.028 14.0 0.2 0.17 11.5 0.1 2.2 3 0 0 3 3 3 0 Elongation factor SelB, winged helix Lactamase_B_2 PF12706.7 gi|332796924|ref|YP_004458424.1| - 7.5e-22 77.8 0.0 2.5e-12 46.7 0.0 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|332796924|ref|YP_004458424.1| - 2e-09 37.8 0.0 6.2e-09 36.1 0.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|332796924|ref|YP_004458424.1| - 0.0055 16.6 0.0 0.028 14.3 0.0 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_4 PF13691.6 gi|332796924|ref|YP_004458424.1| - 0.083 12.6 0.0 0.45 10.2 0.0 2.1 2 0 0 2 2 2 0 tRNase Z endonuclease NAD_binding_10 PF13460.6 gi|332796924|ref|YP_004458424.1| - 0.12 12.3 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 NAD(P)H-binding UPF0020 PF01170.18 gi|332796925|ref|YP_004458425.1| - 1.6e-24 86.7 0.0 5.6e-24 84.9 0.0 1.8 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.14 gi|332796925|ref|YP_004458425.1| - 2.3e-11 43.5 0.0 3.5e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain N6_N4_Mtase PF01555.18 gi|332796925|ref|YP_004458425.1| - 1.7e-09 37.7 0.0 4.7e-06 26.5 0.0 2.4 2 1 0 2 2 2 2 DNA methylase Methyltransf_25 PF13649.6 gi|332796925|ref|YP_004458425.1| - 1.8e-08 35.0 0.0 4.6e-08 33.6 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332796925|ref|YP_004458425.1| - 1.2e-07 31.7 0.0 4.6e-07 29.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332796925|ref|YP_004458425.1| - 1.2e-07 32.3 0.0 1.2e-06 29.1 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|332796925|ref|YP_004458425.1| - 3.8e-07 29.9 0.0 6.8e-07 29.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MethyltransfD12 PF02086.15 gi|332796925|ref|YP_004458425.1| - 9.3e-05 22.2 0.1 0.00076 19.2 0.1 2.5 1 1 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase N6_Mtase PF02384.16 gi|332796925|ref|YP_004458425.1| - 0.00046 19.6 0.0 0.0012 18.2 0.0 1.6 1 1 0 1 1 1 1 N-6 DNA Methylase AviRa PF11599.8 gi|332796925|ref|YP_004458425.1| - 0.0037 16.8 0.0 0.088 12.3 0.0 2.1 1 1 1 2 2 2 1 RRNA methyltransferase AviRa Methyltransf_15 PF09445.10 gi|332796925|ref|YP_004458425.1| - 0.0092 15.6 0.0 0.018 14.7 0.0 1.5 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase N6-adenineMlase PF10237.9 gi|332796925|ref|YP_004458425.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase GTP_EFTU_D4 PF14578.6 gi|332796925|ref|YP_004458425.1| - 0.11 12.4 0.0 0.36 10.8 0.0 1.8 2 0 0 2 2 2 0 Elongation factor Tu domain 4 Pribosyltran_N PF13793.6 gi|332796926|ref|YP_004458426.1| - 2.6e-35 120.8 0.0 5.6e-33 113.3 0.0 2.4 2 1 0 2 2 2 2 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|332796926|ref|YP_004458426.1| - 1.3e-17 63.8 2.4 5.5e-16 58.5 0.4 2.7 3 0 0 3 3 3 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|332796926|ref|YP_004458426.1| - 3.7e-11 43.4 0.4 1e-10 41.9 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosyl synthetase-associated domain SRP54 PF00448.22 gi|332796926|ref|YP_004458426.1| - 0.00073 19.2 0.0 0.0014 18.3 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain S_layer_C PF05124.12 gi|332796926|ref|YP_004458426.1| - 0.014 15.4 0.6 0.043 13.8 0.1 2.0 2 0 0 2 2 2 0 S-layer like family, C-terminal region UPRTase PF14681.6 gi|332796926|ref|YP_004458426.1| - 0.017 14.6 0.1 0.1 12.0 0.0 2.0 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|332796926|ref|YP_004458426.1| - 0.022 14.2 0.0 0.032 13.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase ATP_bind_1 PF03029.17 gi|332796927|ref|YP_004458427.1| - 8.7e-55 186.1 0.0 9.8e-55 185.9 0.0 1.0 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein PduV-EutP PF10662.9 gi|332796927|ref|YP_004458427.1| - 6.1e-05 22.8 0.0 0.14 11.9 0.0 3.0 2 1 0 2 2 2 2 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.6 gi|332796927|ref|YP_004458427.1| - 0.00014 22.3 0.0 0.00021 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|332796927|ref|YP_004458427.1| - 0.0004 20.9 0.0 0.00072 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain CLP1_P PF16575.5 gi|332796927|ref|YP_004458427.1| - 0.001 18.9 0.0 0.46 10.2 0.0 2.9 3 0 0 3 3 3 1 mRNA cleavage and polyadenylation factor CLP1 P-loop RsgA_GTPase PF03193.16 gi|332796927|ref|YP_004458427.1| - 0.0013 18.7 0.0 5.9 6.8 0.0 3.7 3 1 0 3 3 3 0 RsgA GTPase AAA_22 PF13401.6 gi|332796927|ref|YP_004458427.1| - 0.0022 18.3 0.0 0.039 14.2 0.0 2.4 2 1 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|332796927|ref|YP_004458427.1| - 0.0032 16.5 0.0 0.0058 15.6 0.0 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB APS_kinase PF01583.20 gi|332796927|ref|YP_004458427.1| - 0.0037 17.2 0.0 0.0056 16.6 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.19 gi|332796927|ref|YP_004458427.1| - 0.0043 16.7 0.0 0.044 13.4 0.0 2.2 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|332796927|ref|YP_004458427.1| - 0.0069 16.0 0.0 0.087 12.4 0.0 2.1 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ArsA_ATPase PF02374.15 gi|332796927|ref|YP_004458427.1| - 0.0084 15.3 0.0 0.022 13.9 0.0 1.6 2 0 0 2 2 2 1 Anion-transporting ATPase NACHT PF05729.12 gi|332796927|ref|YP_004458427.1| - 0.0086 16.0 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_24 PF13479.6 gi|332796927|ref|YP_004458427.1| - 0.013 15.3 0.0 0.019 14.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.10 gi|332796927|ref|YP_004458427.1| - 0.013 15.0 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CbiA PF01656.23 gi|332796927|ref|YP_004458427.1| - 0.016 15.3 0.0 0.018 15.1 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NTPase_1 PF03266.15 gi|332796927|ref|YP_004458427.1| - 0.019 14.9 0.1 0.047 13.6 0.0 1.7 2 0 0 2 2 1 0 NTPase AAA_7 PF12775.7 gi|332796927|ref|YP_004458427.1| - 0.036 13.6 0.0 0.067 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|332796927|ref|YP_004458427.1| - 0.043 14.1 0.0 0.088 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain FeoB_N PF02421.18 gi|332796927|ref|YP_004458427.1| - 0.049 13.1 0.0 1.3 8.5 0.1 2.7 3 0 0 3 3 3 0 Ferrous iron transport protein B AAA_14 PF13173.6 gi|332796927|ref|YP_004458427.1| - 0.051 13.6 0.0 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|332796927|ref|YP_004458427.1| - 0.068 12.9 0.0 0.2 11.4 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|332796927|ref|YP_004458427.1| - 0.07 12.8 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain MMR_HSR1_Xtn PF16897.5 gi|332796927|ref|YP_004458427.1| - 0.076 13.0 0.0 5.4 7.1 0.0 2.5 1 1 0 1 1 1 0 C-terminal region of MMR_HSR1 domain Septin PF00735.18 gi|332796927|ref|YP_004458427.1| - 0.084 12.1 0.2 14 4.8 0.1 2.6 2 1 0 2 2 2 0 Septin MobB PF03205.14 gi|332796927|ref|YP_004458427.1| - 0.088 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.22 gi|332796927|ref|YP_004458427.1| - 0.092 13.2 0.0 0.27 11.6 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_5 PF07728.14 gi|332796927|ref|YP_004458427.1| - 0.1 12.6 0.0 0.64 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.22 gi|332796927|ref|YP_004458427.1| - 0.1 11.8 0.0 0.22 10.7 0.0 1.5 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.6 gi|332796927|ref|YP_004458427.1| - 0.12 12.5 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|332796927|ref|YP_004458427.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TsaE PF02367.17 gi|332796927|ref|YP_004458427.1| - 0.15 12.1 0.0 0.31 11.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|332796927|ref|YP_004458427.1| - 0.15 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin G-alpha PF00503.20 gi|332796927|ref|YP_004458427.1| - 0.16 11.1 0.0 0.33 10.1 0.0 1.4 1 0 0 1 1 1 0 G-protein alpha subunit PCNA_C PF02747.15 gi|332796928|ref|YP_004458428.1| - 5.3e-11 42.8 0.0 1.1e-09 38.5 0.0 2.4 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain PCNA_N PF00705.18 gi|332796928|ref|YP_004458428.1| - 9.4e-08 31.8 0.0 1.7e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain Rad9 PF04139.13 gi|332796928|ref|YP_004458428.1| - 0.092 12.2 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 Rad9 DNA_primase_S PF01896.19 gi|332796929|ref|YP_004458429.1| - 7.6e-14 52.1 2.1 6.5e-11 42.6 2.1 3.0 1 1 0 1 1 1 1 DNA primase small subunit Ribosomal_L44 PF00935.19 gi|332796931|ref|YP_004458431.1| - 8.4e-31 106.3 4.9 1.3e-30 105.7 4.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|332796931|ref|YP_004458431.1| - 0.0014 18.0 2.0 0.61 9.6 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|332796931|ref|YP_004458431.1| - 0.0021 17.9 3.6 0.04 13.8 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|332796931|ref|YP_004458431.1| - 0.0074 16.0 1.9 1.8 8.4 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_13 PF09855.9 gi|332796931|ref|YP_004458431.1| - 0.034 14.3 0.4 0.79 9.9 0.0 2.2 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DZR PF12773.7 gi|332796931|ref|YP_004458431.1| - 0.043 13.8 0.6 0.12 12.4 0.6 1.7 1 1 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|332796931|ref|YP_004458431.1| - 0.08 12.8 0.3 5 7.1 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|332796931|ref|YP_004458431.1| - 0.092 12.3 2.5 2.1 8.0 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding zf-TFIIB PF13453.6 gi|332796931|ref|YP_004458431.1| - 0.12 11.7 0.3 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf_C2H2_10 PF18414.1 gi|332796931|ref|YP_004458431.1| - 0.32 10.6 3.2 2.4 7.8 0.2 2.2 2 0 0 2 2 2 0 C2H2 type zinc-finger CxC5 PF18718.1 gi|332796931|ref|YP_004458431.1| - 0.52 10.4 5.1 0.4 10.8 0.8 2.0 1 1 0 2 2 2 0 CxC5 like cysteine cluster associated with KDZ transposases Ribosomal_L33 PF00471.20 gi|332796931|ref|YP_004458431.1| - 0.54 10.7 9.0 0.36 11.3 1.2 2.7 2 1 1 3 3 3 0 Ribosomal protein L33 Ribosomal_S27e PF01667.17 gi|332796932|ref|YP_004458432.1| - 5.4e-21 74.1 1.9 5.9e-21 73.9 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|332796932|ref|YP_004458432.1| - 0.0013 18.2 0.6 0.0019 17.6 0.6 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.6 gi|332796932|ref|YP_004458432.1| - 0.0029 17.5 0.6 0.41 10.6 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Hormone_6 PF00236.18 gi|332796932|ref|YP_004458432.1| - 0.0076 16.2 0.1 0.0084 16.1 0.1 1.1 1 0 0 1 1 1 1 Glycoprotein hormone DNA_RNApol_7kD PF03604.13 gi|332796932|ref|YP_004458432.1| - 0.0095 15.6 2.7 0.049 13.3 2.5 2.0 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit DUF951 PF06107.11 gi|332796932|ref|YP_004458432.1| - 0.019 14.9 1.0 0.56 10.2 0.1 2.3 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) DUF35_N PF12172.8 gi|332796932|ref|YP_004458432.1| - 0.026 14.4 0.9 2.2 8.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|332796932|ref|YP_004458432.1| - 0.028 14.4 0.1 0.029 14.4 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DZR PF12773.7 gi|332796932|ref|YP_004458432.1| - 0.036 14.1 1.0 0.068 13.2 1.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|332796932|ref|YP_004458432.1| - 0.041 13.6 5.7 0.66 9.8 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|332796932|ref|YP_004458432.1| - 0.043 13.8 0.7 0.06 13.3 0.7 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc-ribbon_6 PF10005.9 gi|332796932|ref|YP_004458432.1| - 0.051 14.3 0.2 0.067 13.9 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|332796932|ref|YP_004458432.1| - 0.052 13.5 0.7 6.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|332796932|ref|YP_004458432.1| - 0.079 13.1 1.7 0.17 12.0 1.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain RNA_pol_N PF01194.17 gi|332796932|ref|YP_004458432.1| - 0.082 13.2 1.2 0.44 10.9 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases N / 8 kDa subunit ADD_ATRX PF17981.1 gi|332796932|ref|YP_004458432.1| - 0.1 12.5 4.2 3.4 7.6 0.5 2.1 1 1 1 2 2 2 0 Cysteine Rich ADD domain TFIIS_C PF01096.18 gi|332796932|ref|YP_004458432.1| - 0.11 12.3 3.5 2 8.4 0.6 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-LSD1 PF06943.12 gi|332796932|ref|YP_004458432.1| - 0.14 12.0 6.9 0.2 11.5 1.3 2.4 2 1 0 2 2 2 0 LSD1 zinc finger zf-CCHC_6 PF15288.6 gi|332796932|ref|YP_004458432.1| - 0.61 10.0 5.5 1.6 8.6 1.4 2.3 2 0 0 2 2 2 0 Zinc knuckle zf-trcl PF13451.6 gi|332796932|ref|YP_004458432.1| - 0.94 9.4 3.8 3.9 7.4 0.3 2.1 1 1 1 2 2 2 0 Probable zinc-ribbon domain EIF_2_alpha PF07541.12 gi|332796933|ref|YP_004458433.1| - 8.1e-22 77.5 1.1 1.7e-21 76.4 0.1 2.0 2 0 0 2 2 2 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|332796933|ref|YP_004458433.1| - 2.2e-12 47.1 0.2 2.2e-12 47.1 0.2 2.0 2 0 0 2 2 2 1 S1 RNA binding domain Big_8 PF17961.1 gi|332796933|ref|YP_004458433.1| - 0.049 13.8 0.9 0.14 12.3 0.1 2.1 2 1 0 2 2 2 0 Bacterial Ig domain TINF2_N PF14973.6 gi|332796933|ref|YP_004458433.1| - 0.063 13.6 1.1 0.093 13.1 0.3 1.6 2 0 0 2 2 2 0 TERF1-interacting nuclear factor 2 N-terminus DUF16 PF01519.16 gi|332796933|ref|YP_004458433.1| - 0.072 13.6 5.5 0.22 12.0 1.1 2.7 2 1 1 3 3 3 0 Protein of unknown function DUF16 NAF PF03822.14 gi|332796933|ref|YP_004458433.1| - 0.17 12.1 0.4 0.46 10.7 0.4 1.7 1 0 0 1 1 1 0 NAF domain Nop10p PF04135.12 gi|332796934|ref|YP_004458434.1| - 1.2e-24 86.1 0.8 1.3e-24 85.9 0.8 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family STT3 PF02516.14 gi|332796935|ref|YP_004458435.1| - 7.4e-14 51.5 35.7 1.3e-13 50.7 35.7 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit BPD_transp_1 PF00528.22 gi|332796937|ref|YP_004458437.1| - 2.2e-11 43.8 6.9 2.2e-11 43.8 6.9 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component DUF5362 PF17319.2 gi|332796937|ref|YP_004458437.1| - 0.25 11.2 0.1 0.25 11.2 0.1 2.8 3 0 0 3 3 3 0 Family of unknown function (DUF5362) SBP_bac_11 PF13531.6 gi|332796938|ref|YP_004458438.1| - 1.1e-15 58.0 0.0 1.5e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein FBD PF08387.10 gi|332796938|ref|YP_004458438.1| - 0.041 13.8 0.0 0.088 12.7 0.0 1.6 1 0 0 1 1 1 0 FBD DUF1372 PF07116.11 gi|332796938|ref|YP_004458438.1| - 0.17 12.1 1.1 0.39 10.9 1.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1372) adh_short PF00106.25 gi|332796939|ref|YP_004458439.1| - 1.6e-45 155.0 0.4 3.4e-45 153.9 0.4 1.5 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|332796939|ref|YP_004458439.1| - 2.8e-34 118.7 0.0 5.4e-34 117.8 0.0 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.21 gi|332796939|ref|YP_004458439.1| - 0.00013 21.5 0.1 0.00055 19.5 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|332796939|ref|YP_004458439.1| - 0.044 13.7 0.1 0.25 11.2 0.1 2.0 1 1 0 1 1 1 0 NAD(P)H-binding KR PF08659.10 gi|332796939|ref|YP_004458439.1| - 0.06 13.3 0.0 1.1 9.2 0.0 2.1 1 1 0 1 1 1 0 KR domain TatD_DNase PF01026.21 gi|332796940|ref|YP_004458440.1| - 4.6e-30 104.8 0.0 1e-29 103.7 0.0 1.5 1 1 0 1 1 1 1 TatD related DNase Cob_adeno_trans PF01923.18 gi|332796941|ref|YP_004458441.1| - 3.7e-44 150.7 0.0 4.2e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase PKcGMP_CC PF16808.5 gi|332796941|ref|YP_004458441.1| - 0.069 13.0 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase OCD_Mu_crystall PF02423.15 gi|332796942|ref|YP_004458442.1| - 6.3e-45 153.5 0.2 9e-45 153.0 0.2 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|332796942|ref|YP_004458442.1| - 8.4e-05 22.6 0.1 0.00016 21.7 0.1 1.5 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.19 gi|332796942|ref|YP_004458442.1| - 0.00085 18.7 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF2774 PF11242.8 gi|332796942|ref|YP_004458442.1| - 0.0077 16.4 0.0 0.034 14.3 0.0 2.1 3 0 0 3 3 3 1 Protein of unknown function (DUF2774) Lactamase_B PF00753.27 gi|332796944|ref|YP_004458444.1| - 4.6e-14 52.9 0.1 6.4e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3898 PF13037.6 gi|332796944|ref|YP_004458444.1| - 0.013 15.6 0.0 0.5 10.5 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3898) Phage_integrase PF00589.22 gi|332796945|ref|YP_004458445.1| - 4.7e-41 140.4 1.0 2.9e-40 137.9 0.5 2.0 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|332796945|ref|YP_004458445.1| - 5.1e-12 46.1 0.0 3.1e-07 30.7 0.0 2.8 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|332796945|ref|YP_004458445.1| - 3.3e-05 24.1 0.0 0.0022 18.3 0.0 2.7 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain NAPRTase_C PF17956.1 gi|332796945|ref|YP_004458445.1| - 0.073 13.5 0.7 5.2 7.5 0.1 2.5 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase C-terminal domain Radical_SAM PF04055.21 gi|332796946|ref|YP_004458446.1| - 6.6e-16 59.1 0.1 8.1e-14 52.3 0.1 2.2 1 1 1 2 2 2 2 Radical SAM superfamily Fer4_12 PF13353.6 gi|332796946|ref|YP_004458446.1| - 7.5e-11 42.5 0.1 3.1e-10 40.4 0.0 2.0 2 1 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332796946|ref|YP_004458446.1| - 2.3e-09 37.4 0.2 1.6e-08 34.6 0.0 2.5 2 2 2 4 4 4 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|332796946|ref|YP_004458446.1| - 0.0018 18.7 0.0 0.0094 16.4 0.0 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster-binding domain SIL1 PF16782.5 gi|332796946|ref|YP_004458446.1| - 0.061 12.5 0.6 0.54 9.4 0.1 2.3 1 1 1 2 2 2 0 Nucleotide exchange factor SIL1 Hexapep PF00132.24 gi|332796947|ref|YP_004458447.1| - 6.1e-18 63.8 15.0 9.7e-07 28.3 3.6 4.5 3 1 1 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|332796947|ref|YP_004458447.1| - 3.4e-09 36.3 9.2 0.0074 16.0 0.1 3.7 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Methyltr_RsmB-F PF01189.17 gi|332796948|ref|YP_004458448.1| - 2.8e-37 128.3 0.1 1.9e-34 119.1 0.0 2.2 1 1 1 2 2 2 2 16S rRNA methyltransferase RsmB/F Methyltransf_31 PF13847.6 gi|332796948|ref|YP_004458448.1| - 4.9e-08 32.9 0.0 8.3e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PUA PF01472.20 gi|332796948|ref|YP_004458448.1| - 2.7e-05 24.0 0.8 7.5e-05 22.6 0.8 1.8 1 0 0 1 1 1 1 PUA domain Methyltr_RsmF_N PF17125.5 gi|332796948|ref|YP_004458448.1| - 0.00054 20.4 0.1 0.01 16.3 0.0 2.6 3 0 0 3 3 3 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|332796948|ref|YP_004458448.1| - 0.0016 18.6 0.0 0.0056 16.8 0.0 1.7 1 1 0 2 2 2 1 FtsJ-like methyltransferase Methyltransf_5 PF01795.19 gi|332796948|ref|YP_004458448.1| - 0.002 17.7 0.0 0.0043 16.6 0.0 1.5 1 1 0 1 1 1 1 MraW methylase family Methyltransf_25 PF13649.6 gi|332796948|ref|YP_004458448.1| - 0.004 17.8 0.0 0.053 14.2 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|332796948|ref|YP_004458448.1| - 0.0082 15.7 0.0 0.046 13.3 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase small domain GHMP_kinases_C PF08544.13 gi|332796949|ref|YP_004458449.1| - 0.0043 17.4 0.0 0.0082 16.5 0.0 1.3 1 0 0 1 1 1 1 GHMP kinases C terminal GHMP_kinases_N PF00288.26 gi|332796949|ref|YP_004458449.1| - 0.037 14.3 0.0 0.069 13.4 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases N terminal domain AMP-binding PF00501.28 gi|332796950|ref|YP_004458450.1| - 1.2e-63 215.1 0.0 1.5e-63 214.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|332796950|ref|YP_004458450.1| - 7.9e-12 46.0 0.1 1.7e-11 44.9 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Thioredoxin PF00085.20 gi|332796951|ref|YP_004458451.1| - 2.2e-25 88.6 0.3 2.2e-25 88.6 0.3 1.4 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|332796951|ref|YP_004458451.1| - 6.3e-08 33.0 0.9 4.7e-06 27.0 0.9 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|332796951|ref|YP_004458451.1| - 1.3e-07 31.8 2.0 0.00053 20.3 0.1 2.9 2 1 1 3 3 3 2 Thioredoxin-like AhpC-TSA PF00578.21 gi|332796951|ref|YP_004458451.1| - 1.3e-05 25.1 0.4 0.0038 17.1 0.1 2.2 1 1 1 2 2 2 2 AhpC/TSA family OST3_OST6 PF04756.13 gi|332796951|ref|YP_004458451.1| - 1.8e-05 24.2 0.2 2.5e-05 23.8 0.0 1.4 2 0 0 2 2 2 1 OST3 / OST6 family, transporter family Thioredoxin_3 PF13192.6 gi|332796951|ref|YP_004458451.1| - 2.4e-05 24.3 0.2 0.00041 20.3 0.0 2.2 1 1 1 2 2 2 1 Thioredoxin domain Redoxin PF08534.10 gi|332796951|ref|YP_004458451.1| - 0.00026 20.7 0.4 0.0019 17.9 0.2 2.0 1 1 1 2 2 2 1 Redoxin Thioredoxin_9 PF14595.6 gi|332796951|ref|YP_004458451.1| - 0.00081 19.2 0.1 0.0011 18.7 0.1 1.2 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|332796951|ref|YP_004458451.1| - 0.011 15.7 0.0 0.022 14.7 0.0 1.6 2 0 0 2 2 2 0 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.6 gi|332796951|ref|YP_004458451.1| - 0.025 14.8 0.1 0.041 14.1 0.1 1.4 1 0 0 1 1 1 0 Thioredoxin-like DSBA PF01323.20 gi|332796951|ref|YP_004458451.1| - 0.025 14.3 1.0 0.34 10.7 0.0 2.2 1 1 1 2 2 2 0 DSBA-like thioredoxin domain DIM1 PF02966.16 gi|332796951|ref|YP_004458451.1| - 0.026 14.3 0.1 0.038 13.8 0.1 1.3 1 0 0 1 1 1 0 Mitosis protein DIM1 Thioredoxin_6 PF13848.6 gi|332796951|ref|YP_004458451.1| - 0.075 12.9 0.2 0.075 12.9 0.2 1.7 2 1 0 2 2 2 0 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|332796951|ref|YP_004458451.1| - 0.081 12.6 0.4 12 5.5 0.1 2.3 1 1 1 2 2 2 0 Thioredoxin ABC_tran PF00005.27 gi|332796952|ref|YP_004458452.1| - 2.3e-20 73.5 0.0 3.5e-20 72.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332796952|ref|YP_004458452.1| - 1.6e-07 31.4 4.2 5.4e-05 23.1 0.2 2.8 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332796952|ref|YP_004458452.1| - 6.7e-06 26.0 3.4 1.7e-05 24.7 3.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|332796952|ref|YP_004458452.1| - 7.2e-06 26.3 0.3 2.6e-05 24.5 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|332796952|ref|YP_004458452.1| - 3.4e-05 24.4 8.0 0.00045 20.8 8.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|332796952|ref|YP_004458452.1| - 5e-05 23.1 0.1 7.4e-05 22.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|332796952|ref|YP_004458452.1| - 0.00012 21.3 0.1 0.00019 20.6 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|332796952|ref|YP_004458452.1| - 0.00022 20.9 0.0 0.00048 19.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|332796952|ref|YP_004458452.1| - 0.0006 19.6 0.0 0.00082 19.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|332796952|ref|YP_004458452.1| - 0.00086 19.3 0.1 0.0015 18.4 0.1 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|332796952|ref|YP_004458452.1| - 0.0014 19.1 0.9 0.01 16.2 0.9 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|332796952|ref|YP_004458452.1| - 0.0027 17.7 0.1 0.0049 16.9 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|332796952|ref|YP_004458452.1| - 0.0036 17.2 1.7 0.084 12.8 0.1 2.3 2 0 0 2 2 2 1 NTPase AAA_16 PF13191.6 gi|332796952|ref|YP_004458452.1| - 0.0039 17.6 0.0 0.0054 17.1 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|332796952|ref|YP_004458452.1| - 0.0045 17.5 1.1 0.011 16.3 1.1 1.9 1 1 0 1 1 1 1 AAA domain Pox_A32 PF04665.12 gi|332796952|ref|YP_004458452.1| - 0.0049 16.4 0.6 0.011 15.2 0.0 1.8 2 0 0 2 2 2 1 Poxvirus A32 protein AAA_5 PF07728.14 gi|332796952|ref|YP_004458452.1| - 0.01 15.8 0.1 0.22 11.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.6 gi|332796952|ref|YP_004458452.1| - 0.011 15.7 1.1 0.21 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.19 gi|332796952|ref|YP_004458452.1| - 0.015 14.8 0.2 0.015 14.8 0.2 1.9 2 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|332796952|ref|YP_004458452.1| - 0.016 14.5 0.0 0.031 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.14 gi|332796952|ref|YP_004458452.1| - 0.035 14.0 0.1 0.078 12.9 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.22 gi|332796952|ref|YP_004458452.1| - 0.042 13.0 1.6 0.15 11.2 1.6 1.8 1 1 0 1 1 1 0 NB-ARC domain ATPase_2 PF01637.18 gi|332796952|ref|YP_004458452.1| - 0.044 13.7 2.4 0.23 11.4 2.4 2.0 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|332796952|ref|YP_004458452.1| - 0.046 13.9 0.0 0.079 13.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|332796952|ref|YP_004458452.1| - 0.046 14.1 0.1 0.61 10.5 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Rad17 PF03215.15 gi|332796952|ref|YP_004458452.1| - 0.056 13.4 0.5 0.12 12.3 0.1 1.7 1 1 1 2 2 2 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|332796952|ref|YP_004458452.1| - 0.065 13.5 0.1 0.16 12.2 0.1 1.6 2 0 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.17 gi|332796952|ref|YP_004458452.1| - 0.066 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein FtsK_SpoIIIE PF01580.18 gi|332796952|ref|YP_004458452.1| - 0.078 12.3 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family PRK PF00485.18 gi|332796952|ref|YP_004458452.1| - 0.079 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_7 PF12775.7 gi|332796952|ref|YP_004458452.1| - 0.084 12.4 0.2 0.24 10.9 0.1 1.7 2 0 0 2 2 2 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|332796952|ref|YP_004458452.1| - 0.097 12.3 0.4 0.2 11.3 0.1 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC_ATPase PF09818.9 gi|332796952|ref|YP_004458452.1| - 0.097 11.4 0.4 0.42 9.3 0.1 1.9 2 0 0 2 2 2 0 Predicted ATPase of the ABC class cobW PF02492.19 gi|332796952|ref|YP_004458452.1| - 0.1 12.1 0.1 0.2 11.2 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.23 gi|332796952|ref|YP_004458452.1| - 0.11 12.5 0.4 0.2 11.7 0.4 1.7 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.6 gi|332796952|ref|YP_004458452.1| - 0.15 12.4 0.4 0.66 10.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|332796952|ref|YP_004458452.1| - 0.22 11.6 1.3 0.65 10.1 1.1 2.1 1 1 1 2 2 2 0 50S ribosome-binding GTPase Gln-synt_C PF00120.24 gi|332796953|ref|YP_004458453.1| - 9.7e-133 442.4 0.0 1.1e-132 442.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|332796953|ref|YP_004458453.1| - 1.1e-25 89.1 0.0 2.8e-25 87.8 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain HTH_24 PF13412.6 gi|332796954|ref|YP_004458454.1| - 3.4e-09 36.1 1.1 3.4e-09 36.1 1.1 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332796954|ref|YP_004458454.1| - 4.2e-09 36.2 0.1 9.9e-09 35.0 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|332796954|ref|YP_004458454.1| - 2.1e-05 24.3 0.8 4.2e-05 23.3 0.1 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|332796954|ref|YP_004458454.1| - 2.2e-05 24.2 0.0 4.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|332796954|ref|YP_004458454.1| - 0.00015 21.5 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|332796954|ref|YP_004458454.1| - 0.00019 21.3 0.1 0.00071 19.4 0.1 2.0 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|332796954|ref|YP_004458454.1| - 0.0005 20.0 0.1 0.0014 18.5 0.1 1.8 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|332796954|ref|YP_004458454.1| - 0.0029 17.7 0.0 0.0057 16.8 0.0 1.6 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC Phage_rep_O PF04492.13 gi|332796954|ref|YP_004458454.1| - 0.0041 17.7 0.1 0.0094 16.5 0.1 1.6 1 0 0 1 1 1 1 Bacteriophage replication protein O HTH_36 PF13730.6 gi|332796954|ref|YP_004458454.1| - 0.0058 16.6 0.2 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|332796954|ref|YP_004458454.1| - 0.0096 15.6 0.2 0.02 14.5 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_54 PF18607.1 gi|332796954|ref|YP_004458454.1| - 0.042 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 ParA helix turn helix domain NMT1 PF09084.11 gi|332796954|ref|YP_004458454.1| - 0.05 13.5 0.0 1.2 9.0 0.0 2.4 2 1 0 2 2 2 0 NMT1/THI5 like HTH_45 PF14947.6 gi|332796954|ref|YP_004458454.1| - 0.068 13.2 0.1 0.28 11.2 0.1 2.1 2 0 0 2 2 1 0 Winged helix-turn-helix Cdc6_C PF09079.11 gi|332796954|ref|YP_004458454.1| - 0.075 13.0 0.1 0.26 11.3 0.1 2.0 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain DUF3343 PF11823.8 gi|332796954|ref|YP_004458454.1| - 0.12 11.9 0.1 0.71 9.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3343) NMT1_2 PF13379.6 gi|332796954|ref|YP_004458454.1| - 0.18 11.4 0.0 14 5.3 0.0 2.1 1 1 0 2 2 2 0 NMT1-like family GTP_cyclohydroI PF01227.22 gi|332796955|ref|YP_004458455.1| - 2.3e-64 216.1 0.0 2.8e-64 215.8 0.0 1.1 1 0 0 1 1 1 1 GTP cyclohydrolase I FlpD PF02662.16 gi|332796955|ref|YP_004458455.1| - 0.13 12.2 0.3 5.5 7.0 0.0 2.3 2 0 0 2 2 2 0 Methyl-viologen-reducing hydrogenase, delta subunit Peptidase_M24 PF00557.24 gi|332796956|ref|YP_004458456.1| - 9.9e-66 221.4 0.4 1.2e-65 221.1 0.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|332796956|ref|YP_004458456.1| - 1.8e-09 38.4 0.0 3.1e-09 37.6 0.0 1.4 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Endonuc-BglII PF09195.11 gi|332796956|ref|YP_004458456.1| - 0.011 15.6 0.1 0.69 9.7 0.0 2.3 2 0 0 2 2 2 0 Restriction endonuclease BglII UPF0160 PF03690.13 gi|332796956|ref|YP_004458456.1| - 0.66 9.6 3.9 11 5.6 0.2 2.7 2 1 1 3 3 3 0 Uncharacterised protein family (UPF0160) Radical_SAM PF04055.21 gi|332796957|ref|YP_004458457.1| - 1.3e-25 90.7 0.0 2.9e-25 89.6 0.0 1.6 1 1 1 2 2 2 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|332796957|ref|YP_004458457.1| - 5.3e-25 87.8 0.0 8e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|332796957|ref|YP_004458457.1| - 6e-06 26.6 0.0 2.8e-05 24.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332796957|ref|YP_004458457.1| - 8.4e-06 25.9 0.0 1.8e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SAM_DrpA PF18255.1 gi|332796957|ref|YP_004458457.1| - 0.079 13.2 1.3 17 5.8 0.2 3.3 3 1 1 4 4 4 0 DNA processing protein A sterile alpha motif domain EPSP_synthase PF00275.20 gi|332796957|ref|YP_004458457.1| - 0.08 11.6 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) zf-ribbon_3 PF13248.6 gi|332796958|ref|YP_004458458.1| - 7.5e-05 22.0 1.6 0.11 11.9 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|332796958|ref|YP_004458458.1| - 8.8e-05 21.9 0.9 0.00046 19.6 0.9 2.0 1 1 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|332796958|ref|YP_004458458.1| - 0.00028 20.9 0.4 0.15 12.2 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|332796958|ref|YP_004458458.1| - 0.0003 20.4 2.1 0.25 11.1 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain YhfH PF14149.6 gi|332796958|ref|YP_004458458.1| - 0.00063 19.7 1.4 0.4 10.7 0.1 2.2 2 0 0 2 2 2 2 YhfH-like protein zf_UBZ PF18439.1 gi|332796958|ref|YP_004458458.1| - 0.00092 18.7 1.3 0.79 9.4 0.1 2.2 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Ogr_Delta PF04606.12 gi|332796958|ref|YP_004458458.1| - 0.0013 18.6 0.2 0.47 10.5 0.0 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger DZR PF12773.7 gi|332796958|ref|YP_004458458.1| - 0.0021 18.0 0.5 0.0036 17.3 0.5 1.3 1 1 0 1 1 1 1 Double zinc ribbon Nudix_N_2 PF14803.6 gi|332796958|ref|YP_004458458.1| - 0.0035 17.2 0.7 0.27 11.2 1.5 2.2 1 1 1 2 2 2 2 Nudix N-terminal Zn_Tnp_IS1595 PF12760.7 gi|332796958|ref|YP_004458458.1| - 0.0041 17.1 1.8 0.012 15.6 2.1 1.6 1 1 1 2 2 2 1 Transposase zinc-ribbon domain zf-TFIIB PF13453.6 gi|332796958|ref|YP_004458458.1| - 0.0047 16.2 2.4 0.06 12.7 2.6 2.0 1 1 1 2 2 2 1 Transcription factor zinc-finger CpXC PF14353.6 gi|332796958|ref|YP_004458458.1| - 0.0061 16.6 0.6 1.8 8.6 0.1 2.1 1 1 1 2 2 2 1 CpXC protein zf-C2H2_9 PF16293.5 gi|332796958|ref|YP_004458458.1| - 0.0075 16.1 0.5 2.3 8.1 0.0 2.2 2 0 0 2 2 2 1 C2H2 type zinc-finger (1 copy) zf-HIT PF04438.16 gi|332796958|ref|YP_004458458.1| - 0.0091 15.8 3.6 0.39 10.6 0.6 2.1 2 0 0 2 2 2 1 HIT zinc finger zf-tcix PF14952.6 gi|332796958|ref|YP_004458458.1| - 0.01 15.4 1.7 2.3 7.9 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_15 PF17032.5 gi|332796958|ref|YP_004458458.1| - 0.011 16.4 0.5 0.014 16.1 0.5 1.2 1 0 0 1 1 1 0 zinc-ribbon family DUF4428 PF14471.6 gi|332796958|ref|YP_004458458.1| - 0.011 15.6 0.4 2.7 8.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) DNA_ligase_ZBD PF03119.16 gi|332796958|ref|YP_004458458.1| - 0.012 15.6 1.9 0.49 10.5 0.1 2.4 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.6 gi|332796958|ref|YP_004458458.1| - 0.015 16.0 0.1 6.6 7.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.6 gi|332796958|ref|YP_004458458.1| - 0.015 15.0 0.3 0.55 10.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|332796958|ref|YP_004458458.1| - 0.015 15.2 2.4 0.099 12.6 0.4 2.0 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Terminase_GpA PF05876.12 gi|332796958|ref|YP_004458458.1| - 0.017 13.7 0.2 0.019 13.5 0.2 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) GFA PF04828.14 gi|332796958|ref|YP_004458458.1| - 0.019 15.3 0.8 0.96 9.8 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.7 gi|332796958|ref|YP_004458458.1| - 0.02 15.3 0.7 2.6 8.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DNA_RNApol_7kD PF03604.13 gi|332796958|ref|YP_004458458.1| - 0.021 14.5 1.4 4.2 7.1 0.1 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc-ribbons_6 PF07191.12 gi|332796958|ref|YP_004458458.1| - 0.022 14.7 0.5 0.071 13.1 0.5 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-HYPF PF07503.12 gi|332796958|ref|YP_004458458.1| - 0.023 14.5 0.4 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 HypF finger zf-C4_Topoisom PF01396.19 gi|332796958|ref|YP_004458458.1| - 0.025 14.4 1.6 3.3 7.6 0.1 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-NADH-PPase PF09297.11 gi|332796958|ref|YP_004458458.1| - 0.028 14.1 2.3 4.1 7.2 0.2 2.4 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zf-GRF PF06839.12 gi|332796958|ref|YP_004458458.1| - 0.029 14.5 1.3 0.046 13.8 1.2 1.4 1 1 0 1 1 1 0 GRF zinc finger YacG PF03884.14 gi|332796958|ref|YP_004458458.1| - 0.03 14.1 0.7 5 6.9 0.0 2.1 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG HypA PF01155.19 gi|332796958|ref|YP_004458458.1| - 0.033 14.2 0.2 0.038 14.0 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF3268 PF11672.8 gi|332796958|ref|YP_004458458.1| - 0.04 14.2 0.2 0.044 14.1 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain Cys_rich_CPXG PF14255.6 gi|332796958|ref|YP_004458458.1| - 0.05 13.5 0.4 0.14 12.1 0.4 1.8 1 1 0 1 1 1 0 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.6 gi|332796958|ref|YP_004458458.1| - 0.052 13.5 3.4 1.4 8.9 3.4 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Rubredoxin PF00301.20 gi|332796958|ref|YP_004458458.1| - 0.057 13.5 0.5 7.8 6.6 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin Prok-RING_1 PF14446.6 gi|332796958|ref|YP_004458458.1| - 0.057 13.4 0.6 6.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF35_N PF12172.8 gi|332796958|ref|YP_004458458.1| - 0.063 13.2 1.3 2.7 8.0 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-DNA_Pol PF08996.10 gi|332796958|ref|YP_004458458.1| - 0.073 12.8 0.2 0.078 12.7 0.2 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf-Mss51 PF13824.6 gi|332796958|ref|YP_004458458.1| - 0.084 13.0 2.1 2.4 8.3 2.2 2.1 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|332796958|ref|YP_004458458.1| - 0.097 12.6 1.1 0.31 11.0 1.1 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Acetone_carb_G PF08882.11 gi|332796958|ref|YP_004458458.1| - 0.12 12.5 1.0 12 6.1 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Lar_restr_allev PF14354.6 gi|332796958|ref|YP_004458458.1| - 0.12 12.7 1.8 0.25 11.8 1.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar TFIIS_C PF01096.18 gi|332796958|ref|YP_004458458.1| - 0.13 12.1 3.5 0.51 10.2 3.5 1.8 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_10 PF10058.9 gi|332796958|ref|YP_004458458.1| - 0.18 11.5 2.4 0.65 9.8 2.4 1.8 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein Mu-like_Com PF10122.9 gi|332796958|ref|YP_004458458.1| - 0.31 10.5 3.9 4.6 6.8 0.1 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com DUF1610 PF07754.11 gi|332796958|ref|YP_004458458.1| - 0.4 10.7 4.6 3.8 7.6 0.7 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Rubredoxin_2 PF18073.1 gi|332796958|ref|YP_004458458.1| - 0.41 10.4 2.9 1.5 8.6 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-CCHC_5 PF14787.6 gi|332796958|ref|YP_004458458.1| - 0.48 10.2 2.6 2 8.2 0.1 2.1 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger PALP PF00291.25 gi|332796960|ref|YP_004458460.1| - 9.1e-53 179.6 0.0 3.8e-52 177.5 0.0 1.7 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_S51 PF03575.17 gi|332796960|ref|YP_004458460.1| - 0.063 12.9 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase family S51 TusA PF01206.17 gi|332796961|ref|YP_004458461.1| - 5.9e-08 32.4 0.0 6.7e-08 32.3 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF1923 PF09083.10 gi|332796961|ref|YP_004458461.1| - 0.056 13.1 0.4 0.21 11.3 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1923) AAA_lid_7 PF17867.1 gi|332796961|ref|YP_004458461.1| - 0.07 13.3 0.0 0.077 13.2 0.0 1.1 1 0 0 1 1 1 0 Midasin AAA lid domain DrsE_2 PF13686.6 gi|332796962|ref|YP_004458462.1| - 2.7e-13 50.1 0.3 1.3e-08 34.9 0.1 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|332796962|ref|YP_004458462.1| - 7.8e-06 26.2 0.0 9.5e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DUF2833 PF11090.8 gi|332796962|ref|YP_004458462.1| - 0.0062 16.9 0.1 0.0098 16.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2833) Cpn10 PF00166.21 gi|332796962|ref|YP_004458462.1| - 0.14 12.3 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Chaperonin 10 Kd subunit DUF711 PF05167.12 gi|332796963|ref|YP_004458463.1| - 1e-30 107.0 0.0 1.6e-29 103.0 0.0 2.5 1 1 0 2 2 2 1 Uncharacterised ACR (DUF711) KdpD PF02702.17 gi|332796963|ref|YP_004458463.1| - 0.13 11.7 0.2 0.27 10.7 0.2 1.4 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain MazE_antitoxin PF04014.18 gi|332796964|ref|YP_004458464.1| - 3.4e-08 33.2 0.1 1.2e-07 31.4 0.0 2.1 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PhoU PF01895.19 gi|332796964|ref|YP_004458464.1| - 0.00019 21.8 2.8 0.00019 21.8 2.8 2.5 2 0 0 2 2 2 2 PhoU domain RICTOR_M PF14666.6 gi|332796964|ref|YP_004458464.1| - 0.0029 17.4 1.8 0.0049 16.6 0.3 2.1 2 0 0 2 2 2 1 Rapamycin-insensitive companion of mTOR, middle domain QRPTase_C PF01729.19 gi|332796965|ref|YP_004458465.1| - 1.9e-24 86.3 0.0 2.6e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain NAPRTase_C PF17956.1 gi|332796965|ref|YP_004458465.1| - 1.6e-06 28.5 0.0 4.3e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase C-terminal domain QRPTase_N PF02749.16 gi|332796965|ref|YP_004458465.1| - 0.0041 17.2 0.0 0.0077 16.3 0.0 1.4 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase PF04095.16 gi|332796965|ref|YP_004458465.1| - 0.0087 15.7 0.0 0.017 14.7 0.0 1.5 1 1 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_N PF17767.1 gi|332796965|ref|YP_004458465.1| - 0.024 15.0 0.0 0.21 12.0 0.0 2.1 1 1 1 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Ribosomal_S19e PF01090.19 gi|332796966|ref|YP_004458466.1| - 9.9e-44 148.4 0.0 1.1e-43 148.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e RuvB_C PF05491.13 gi|332796966|ref|YP_004458466.1| - 0.088 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain dsDNA_bind PF01984.20 gi|332796967|ref|YP_004458467.1| - 1.4e-26 93.0 11.8 1.6e-26 92.8 11.8 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain SurA_N PF09312.11 gi|332796967|ref|YP_004458467.1| - 0.011 15.8 1.9 0.014 15.5 1.5 1.5 1 1 0 1 1 1 0 SurA N-terminal domain T3SS_needle_reg PF09025.10 gi|332796967|ref|YP_004458467.1| - 0.018 15.0 0.9 0.022 14.7 0.9 1.1 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator DUF4085 PF13315.6 gi|332796967|ref|YP_004458467.1| - 0.3 10.7 2.1 0.33 10.6 2.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) Ribosomal_L39 PF00832.20 gi|332796968|ref|YP_004458468.1| - 8.9e-21 73.3 7.4 1e-20 73.1 7.4 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|332796969|ref|YP_004458469.1| - 3.6e-08 33.5 0.2 4.5e-08 33.2 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e ATPase PF06745.13 gi|332796969|ref|YP_004458469.1| - 0.004 16.5 0.3 0.0045 16.4 0.3 1.0 1 0 0 1 1 1 1 KaiC Exog_C PF18026.1 gi|332796969|ref|YP_004458469.1| - 0.05 13.7 0.2 0.098 12.7 0.2 1.5 1 0 0 1 1 1 0 Endo/exonuclease (EXOG) C-terminal domain eIF-6 PF01912.18 gi|332796970|ref|YP_004458470.1| - 2.7e-71 239.1 5.1 3.3e-71 238.7 5.1 1.1 1 0 0 1 1 1 1 eIF-6 family DUF5030 PF16433.5 gi|332796970|ref|YP_004458470.1| - 0.017 14.5 0.3 0.028 13.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5030) Ribosomal_L18A PF01775.17 gi|332796971|ref|YP_004458471.1| - 1.6e-10 41.1 1.4 1e-09 38.5 0.7 1.9 1 1 1 2 2 2 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A Prefoldin PF02996.17 gi|332796972|ref|YP_004458472.1| - 1.6e-20 73.2 5.6 2.3e-20 72.7 5.6 1.2 1 0 0 1 1 1 1 Prefoldin subunit DUF5082 PF16888.5 gi|332796972|ref|YP_004458472.1| - 0.01 16.1 1.2 0.01 16.1 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) Prefoldin_2 PF01920.20 gi|332796972|ref|YP_004458472.1| - 0.099 12.6 10.2 0.28 11.2 0.9 2.4 2 1 0 2 2 2 0 Prefoldin subunit GCIP PF13324.6 gi|332796972|ref|YP_004458472.1| - 0.23 11.0 6.8 0.32 10.6 2.5 2.3 2 1 0 2 2 2 0 Grap2 and cyclin-D-interacting zf-C4H2 PF10146.9 gi|332796972|ref|YP_004458472.1| - 0.78 10.0 3.8 2.1 8.6 0.3 2.0 2 0 0 2 2 2 0 Zinc finger-containing protein ArlS_N PF18719.1 gi|332796972|ref|YP_004458472.1| - 0.82 9.9 5.0 2.1 8.6 0.4 2.2 2 0 0 2 2 2 0 ArlS sensor domain Med9 PF07544.13 gi|332796972|ref|YP_004458472.1| - 1.1 9.4 9.0 8.2 6.6 0.3 2.2 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 COG5 PF10392.9 gi|332796972|ref|YP_004458472.1| - 2 8.6 8.9 0.3 11.3 4.0 1.8 2 0 0 2 2 2 0 Golgi transport complex subunit 5 DHR10 PF18595.1 gi|332796972|ref|YP_004458472.1| - 3.6 7.7 12.8 3 7.9 2.2 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain SRP54 PF00448.22 gi|332796973|ref|YP_004458473.1| - 2.7e-75 252.3 0.2 3.7e-75 251.9 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|332796973|ref|YP_004458473.1| - 2.4e-12 46.9 6.0 2.4e-12 46.9 6.0 2.2 2 1 1 3 3 2 1 SRP54-type protein, helical bundle domain cobW PF02492.19 gi|332796973|ref|YP_004458473.1| - 4e-06 26.5 0.3 6.4e-06 25.9 0.3 1.3 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.6 gi|332796973|ref|YP_004458473.1| - 5.6e-06 26.2 0.0 9.9e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|332796973|ref|YP_004458473.1| - 1.2e-05 24.4 0.0 0.00085 18.4 0.0 2.1 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|332796973|ref|YP_004458473.1| - 1.5e-05 25.3 0.1 7.4e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|332796973|ref|YP_004458473.1| - 2.6e-05 24.3 5.9 7.8e-05 22.7 2.2 2.9 2 2 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_17 PF13207.6 gi|332796973|ref|YP_004458473.1| - 3.3e-05 24.3 2.2 4.1e-05 24.0 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|332796973|ref|YP_004458473.1| - 9.6e-05 22.8 2.1 0.00022 21.6 0.1 2.7 2 2 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|332796973|ref|YP_004458473.1| - 0.0003 20.8 5.8 0.015 15.2 0.4 2.9 1 1 2 3 3 3 1 NTPase AAA_24 PF13479.6 gi|332796973|ref|YP_004458473.1| - 0.00068 19.4 0.1 0.0013 18.5 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|332796973|ref|YP_004458473.1| - 0.00085 19.5 0.1 0.0057 16.8 0.0 2.4 2 1 0 2 2 2 1 AAA domain RecA PF00154.21 gi|332796973|ref|YP_004458473.1| - 0.00095 18.7 0.1 0.0013 18.3 0.1 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein AAA_31 PF13614.6 gi|332796973|ref|YP_004458473.1| - 0.0011 18.9 1.2 0.0011 18.9 1.2 2.8 2 1 0 2 2 2 1 AAA domain KdpD PF02702.17 gi|332796973|ref|YP_004458473.1| - 0.0016 18.0 0.9 0.0028 17.2 0.1 1.9 2 0 0 2 2 2 1 Osmosensitive K+ channel His kinase sensor domain TAFH PF07531.14 gi|332796973|ref|YP_004458473.1| - 0.0017 18.4 0.6 0.011 15.8 0.2 2.2 1 1 1 2 2 2 1 NHR1 homology to TAF AAA_14 PF13173.6 gi|332796973|ref|YP_004458473.1| - 0.0042 17.1 1.7 0.082 12.9 0.0 2.3 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|332796973|ref|YP_004458473.1| - 0.0043 16.3 1.1 0.017 14.3 0.4 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MMR_HSR1 PF01926.23 gi|332796973|ref|YP_004458473.1| - 0.0062 16.6 3.1 0.0076 16.3 0.5 2.3 2 1 0 2 2 2 1 50S ribosome-binding GTPase Peripla_BP_4 PF13407.6 gi|332796973|ref|YP_004458473.1| - 0.0068 16.0 0.6 1.1 8.8 0.1 2.7 3 0 0 3 3 3 1 Periplasmic binding protein domain DUF2075 PF09848.9 gi|332796973|ref|YP_004458473.1| - 0.0069 15.7 0.3 0.013 14.8 0.0 1.5 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|332796973|ref|YP_004458473.1| - 0.0089 16.4 0.1 0.031 14.7 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|332796973|ref|YP_004458473.1| - 0.0092 15.9 0.1 0.029 14.3 0.1 1.8 1 1 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|332796973|ref|YP_004458473.1| - 0.011 15.3 0.5 0.75 9.3 0.5 3.0 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|332796973|ref|YP_004458473.1| - 0.012 14.9 0.1 0.028 13.7 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin Glyco_trans_4_2 PF13477.6 gi|332796973|ref|YP_004458473.1| - 0.014 15.4 0.0 0.062 13.3 0.0 2.1 1 1 1 2 2 2 0 Glycosyl transferase 4-like DUF445 PF04286.12 gi|332796973|ref|YP_004458473.1| - 0.019 14.8 5.8 0.026 14.3 5.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF445) MobB PF03205.14 gi|332796973|ref|YP_004458473.1| - 0.02 14.8 0.2 0.049 13.5 0.1 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.20 gi|332796973|ref|YP_004458473.1| - 0.02 14.8 0.0 0.054 13.4 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase Thymidylate_kin PF02223.17 gi|332796973|ref|YP_004458473.1| - 0.028 14.1 0.2 0.089 12.5 0.0 1.9 2 1 1 3 3 1 0 Thymidylate kinase TPP_enzyme_M PF00205.22 gi|332796973|ref|YP_004458473.1| - 0.031 14.0 0.1 0.94 9.2 0.1 2.6 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain Fer4_NifH PF00142.18 gi|332796973|ref|YP_004458473.1| - 0.033 13.6 0.9 0.063 12.7 0.1 1.9 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family GTP_EFTU PF00009.27 gi|332796973|ref|YP_004458473.1| - 0.063 12.8 0.1 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_19 PF13245.6 gi|332796973|ref|YP_004458473.1| - 0.063 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|332796973|ref|YP_004458473.1| - 0.084 12.8 0.2 0.82 9.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain NB-ARC PF00931.22 gi|332796973|ref|YP_004458473.1| - 0.12 11.6 1.2 0.39 9.9 0.1 2.1 1 1 1 2 2 2 0 NB-ARC domain AAA_7 PF12775.7 gi|332796973|ref|YP_004458473.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region CbiJ PF02571.14 gi|332796973|ref|YP_004458473.1| - 0.13 11.8 0.2 0.67 9.4 0.2 2.0 1 1 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK PTPlike_phytase PF14566.6 gi|332796973|ref|YP_004458473.1| - 0.14 12.3 0.4 3.7 7.6 0.0 2.4 1 1 1 2 2 2 0 Inositol hexakisphosphate PNPase PF03726.14 gi|332796973|ref|YP_004458473.1| - 0.14 12.7 3.0 0.22 12.0 1.5 2.1 1 1 1 2 2 2 0 Polyribonucleotide nucleotidyltransferase, RNA binding domain MipZ PF09140.11 gi|332796973|ref|YP_004458473.1| - 0.16 11.2 1.3 2.6 7.3 1.2 2.4 1 1 0 1 1 1 0 ATPase MipZ AAA_28 PF13521.6 gi|332796973|ref|YP_004458473.1| - 0.17 12.1 0.1 0.46 10.7 0.1 1.8 1 1 1 2 2 2 0 AAA domain SpoIIID PF12116.8 gi|332796973|ref|YP_004458473.1| - 0.18 11.9 1.0 2.6 8.2 0.2 2.6 2 0 0 2 2 2 0 Stage III sporulation protein D DrrA_P4M PF14860.6 gi|332796973|ref|YP_004458473.1| - 2.8 7.8 6.2 0.99 9.3 3.0 2.0 2 1 0 2 2 1 0 DrrA phosphatidylinositol 4-phosphate binding domain SecE PF00584.20 gi|332796974|ref|YP_004458474.1| - 5.7e-05 23.0 0.7 6.7e-05 22.7 0.7 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|332796975|ref|YP_004458475.1| - 9.1e-24 83.2 0.1 3.5e-23 81.3 0.0 1.8 2 0 0 2 2 2 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|332796975|ref|YP_004458475.1| - 3.4e-07 30.0 3.5 5.9e-07 29.2 1.2 2.4 2 0 0 2 2 2 1 KOW motif Ribosomal_L11_N PF03946.14 gi|332796976|ref|YP_004458476.1| - 1.7e-20 72.6 1.4 3.4e-20 71.7 1.4 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L11 PF00298.19 gi|332796976|ref|YP_004458476.1| - 4e-18 65.7 1.1 6.6e-18 65.0 1.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L1 PF00687.21 gi|332796977|ref|YP_004458477.1| - 7.3e-32 110.8 3.4 8.8e-32 110.5 3.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family DUF4224 PF13986.6 gi|332796977|ref|YP_004458477.1| - 0.031 14.2 0.1 0.064 13.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) Glyco_transf_49 PF13896.6 gi|332796977|ref|YP_004458477.1| - 0.041 13.2 0.4 0.08 12.3 0.4 1.5 1 1 0 1 1 1 0 Glycosyl-transferase for dystroglycan Ribosomal_L10 PF00466.20 gi|332796978|ref|YP_004458478.1| - 3.3e-27 94.5 1.9 9.1e-27 93.1 1.9 1.8 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|332796978|ref|YP_004458478.1| - 3.4e-18 65.4 0.1 8.1e-18 64.2 0.1 1.7 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Ribosomal_60s PF00428.19 gi|332796978|ref|YP_004458478.1| - 0.023 15.3 10.1 0.045 14.3 10.1 1.6 1 1 0 1 1 1 0 60s Acidic ribosomal protein DUF2999 PF11212.8 gi|332796978|ref|YP_004458478.1| - 0.14 12.5 0.3 0.83 10.0 0.0 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF2999) TubC_N PF18563.1 gi|332796978|ref|YP_004458478.1| - 0.22 11.5 2.2 0.6 10.1 0.5 2.4 2 0 0 2 2 2 0 TubC N-terminal docking domain Ribosomal_60s PF00428.19 gi|332796979|ref|YP_004458479.1| - 2.8e-21 75.9 14.1 3.3e-21 75.7 14.1 1.0 1 0 0 1 1 1 1 60s Acidic ribosomal protein PepSY_2 PF13670.6 gi|332796979|ref|YP_004458479.1| - 0.0079 16.2 3.7 1.1 9.2 1.4 2.1 2 0 0 2 2 2 2 Peptidase propeptide and YPEB domain DUF2007 PF09413.10 gi|332796979|ref|YP_004458479.1| - 0.06 13.5 0.1 0.15 12.3 0.1 1.7 1 1 0 1 1 1 0 Putative prokaryotic signal transducing protein EF-hand_14 PF17959.1 gi|332796979|ref|YP_004458479.1| - 0.081 13.3 0.1 0.14 12.6 0.0 1.4 2 0 0 2 2 2 0 EF-hand domain PhetRS_B1 PF18262.1 gi|332796979|ref|YP_004458479.1| - 0.087 13.1 0.4 0.15 12.3 0.4 1.6 1 1 0 1 1 1 0 Phe-tRNA synthetase beta subunit B1 domain DUF3391 PF11871.8 gi|332796979|ref|YP_004458479.1| - 0.28 11.7 3.9 0.39 11.3 3.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3391) tRNA-synt_2c PF01411.19 gi|332796980|ref|YP_004458480.1| - 2.4e-119 399.4 0.0 3.3e-119 398.9 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.14 gi|332796980|ref|YP_004458480.1| - 2.1e-14 53.3 0.3 4.8e-14 52.2 0.3 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2e PF02091.15 gi|332796980|ref|YP_004458480.1| - 0.001 18.4 0.0 0.0025 17.1 0.0 1.6 1 0 0 1 1 1 1 Glycyl-tRNA synthetase alpha subunit DHHA1 PF02272.19 gi|332796980|ref|YP_004458480.1| - 0.0012 19.3 0.7 0.0032 17.9 0.7 1.8 1 0 0 1 1 1 1 DHHA1 domain FAP206 PF12018.8 gi|332796980|ref|YP_004458480.1| - 0.14 11.6 0.1 0.26 10.8 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function HA PF03457.14 gi|332796980|ref|YP_004458480.1| - 0.25 11.7 0.7 30 5.0 0.2 2.7 2 0 0 2 2 2 0 Helicase associated domain DUF5616 PF18481.1 gi|332796981|ref|YP_004458481.1| - 4.7e-24 85.3 1.9 6.6e-24 84.8 1.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5616) DUF434 PF04256.12 gi|332796981|ref|YP_004458481.1| - 9e-24 82.9 1.0 1.5e-23 82.3 1.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF434) Mut7-C PF01927.16 gi|332796981|ref|YP_004458481.1| - 0.18 11.9 0.0 15 5.7 0.0 2.1 2 0 0 2 2 2 0 Mut7-C RNAse domain AdoMet_dc PF02675.15 gi|332796982|ref|YP_004458482.1| - 7.9e-35 119.3 0.0 9e-35 119.1 0.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine decarboxylase YbaB_DNA_bd PF02575.16 gi|332796982|ref|YP_004458482.1| - 0.017 15.3 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 YbaB/EbfC DNA-binding family ACP_syn_III_C PF08541.10 gi|332796983|ref|YP_004458483.1| - 8.6e-10 38.7 0.0 8.8e-09 35.4 0.0 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|332796983|ref|YP_004458483.1| - 4.1e-05 23.4 1.7 0.00011 22.0 0.6 2.1 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HMG_CoA_synt_C PF08540.10 gi|332796983|ref|YP_004458483.1| - 0.00017 21.3 0.2 0.021 14.5 0.0 2.1 1 1 1 2 2 2 2 Hydroxymethylglutaryl-coenzyme A synthase C terminal HMG_CoA_synt_N PF01154.17 gi|332796983|ref|YP_004458483.1| - 0.0015 18.4 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal Thiolase_N PF00108.23 gi|332796983|ref|YP_004458483.1| - 0.0039 16.6 0.1 0.0057 16.0 0.1 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain FAE1_CUT1_RppA PF08392.12 gi|332796983|ref|YP_004458483.1| - 0.041 13.2 0.0 0.095 12.0 0.0 1.5 2 0 0 2 2 2 0 FAE1/Type III polyketide synthase-like protein Thiolase_N PF00108.23 gi|332796984|ref|YP_004458484.1| - 7.1e-10 38.7 0.0 4.8e-09 36.0 0.0 2.0 1 1 0 1 1 1 1 Thiolase, N-terminal domain ACP_syn_III PF08545.10 gi|332796984|ref|YP_004458484.1| - 1.5e-05 24.8 0.4 0.0058 16.5 0.1 2.9 2 1 1 3 3 3 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ketoacyl-synt PF00109.26 gi|332796984|ref|YP_004458484.1| - 0.00037 20.2 0.0 0.00099 18.8 0.0 1.7 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|332796984|ref|YP_004458484.1| - 0.022 14.4 0.0 0.041 13.6 0.0 1.4 1 0 0 1 1 1 0 Thiolase, C-terminal domain MqsR_toxin PF15723.5 gi|332796984|ref|YP_004458484.1| - 0.11 12.8 0.3 0.23 11.8 0.3 1.5 1 0 0 1 1 1 0 Motility quorum-sensing regulator, toxin of MqsA OB_aCoA_assoc PF01796.17 gi|332796985|ref|YP_004458485.1| - 7.8e-14 51.4 0.0 1e-13 51.1 0.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|332796985|ref|YP_004458485.1| - 1.9e-07 30.8 0.0 3.1e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|332796985|ref|YP_004458485.1| - 0.0032 17.2 0.8 0.0046 16.6 0.8 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 DUF1258 PF06869.12 gi|332796985|ref|YP_004458485.1| - 0.013 15.1 0.3 0.018 14.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) DUF5603 PF18231.1 gi|332796985|ref|YP_004458485.1| - 0.013 15.8 0.0 6.1 7.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5603) DUF2039 PF10217.9 gi|332796985|ref|YP_004458485.1| - 0.049 14.0 0.9 0.075 13.4 0.9 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) HypA PF01155.19 gi|332796985|ref|YP_004458485.1| - 0.058 13.4 0.1 0.089 12.8 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_13 PF09855.9 gi|332796985|ref|YP_004458485.1| - 0.059 13.5 1.0 0.68 10.1 0.1 2.1 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Rubredoxin_2 PF18073.1 gi|332796985|ref|YP_004458485.1| - 0.067 12.9 1.5 7.9 6.3 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain VWA_2 PF13519.6 gi|332796985|ref|YP_004458485.1| - 0.2 12.3 0.0 0.25 12.0 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain Zn-ribbon_8 PF09723.10 gi|332796985|ref|YP_004458485.1| - 0.31 11.2 2.2 0.99 9.6 2.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|332796985|ref|YP_004458485.1| - 5.1 6.6 6.9 13 5.3 0.7 2.1 1 1 1 2 2 2 0 zinc-ribbon domain HMG-CoA_red PF00368.18 gi|332796986|ref|YP_004458486.1| - 2.3e-129 431.6 2.2 2.6e-129 431.4 2.2 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Fic PF02661.18 gi|332796986|ref|YP_004458486.1| - 0.12 13.3 0.0 0.29 12.1 0.0 1.6 1 0 0 1 1 1 0 Fic/DOC family AF2331-like PF14556.6 gi|332796986|ref|YP_004458486.1| - 0.15 12.6 0.2 0.79 10.3 0.0 2.1 2 0 0 2 2 2 0 AF2331-like SHMT PF00464.19 gi|332796987|ref|YP_004458487.1| - 1.6e-68 231.2 0.0 1.9e-68 230.9 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|332796987|ref|YP_004458487.1| - 1.8e-09 37.3 0.0 7.8e-09 35.2 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|332796987|ref|YP_004458487.1| - 1.7e-07 30.8 0.0 2.8e-07 30.1 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|332796987|ref|YP_004458487.1| - 2.4e-05 23.5 0.1 0.00038 19.5 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V XTBD PF11952.8 gi|332796987|ref|YP_004458487.1| - 0.019 14.7 0.4 0.78 9.5 0.0 3.1 3 0 0 3 3 3 0 XRN-Two Binding Domain, XTBD SelA PF03841.13 gi|332796987|ref|YP_004458487.1| - 0.038 13.0 0.0 0.093 11.7 0.0 1.7 1 1 0 1 1 1 0 L-seryl-tRNA selenium transferase Adenine_glyco PF03352.13 gi|332796987|ref|YP_004458487.1| - 0.14 11.9 0.3 0.77 9.5 0.0 2.3 3 0 0 3 3 3 0 Methyladenine glycosylase LytR_C PF13399.6 gi|332796987|ref|YP_004458487.1| - 0.16 13.0 0.0 0.34 11.9 0.0 1.5 1 0 0 1 1 1 0 LytR cell envelope-related transcriptional attenuator Usp PF00582.26 gi|332796988|ref|YP_004458488.1| - 5.1e-19 69.2 0.2 9.9e-10 39.1 0.0 2.1 1 1 1 2 2 2 2 Universal stress protein family HECT PF00632.25 gi|332796988|ref|YP_004458488.1| - 0.13 11.8 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 HECT-domain (ubiquitin-transferase) Gp_dh_C PF02800.20 gi|332796989|ref|YP_004458489.1| - 2.1e-21 76.2 1.0 3.1e-21 75.6 1.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|332796989|ref|YP_004458489.1| - 7.1e-12 45.5 0.4 1.8e-11 44.2 0.3 1.8 1 1 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|332796989|ref|YP_004458489.1| - 6.5e-06 26.4 0.5 4.7e-05 23.7 0.2 2.7 2 1 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|332796989|ref|YP_004458489.1| - 0.00025 21.8 0.3 0.0013 19.6 0.0 2.1 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|332796989|ref|YP_004458489.1| - 0.0018 18.9 0.1 0.0077 16.9 0.0 2.2 1 1 2 3 3 3 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|332796989|ref|YP_004458489.1| - 0.0021 17.4 1.6 0.46 9.8 0.2 3.2 2 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|332796989|ref|YP_004458489.1| - 0.029 14.5 1.4 0.2 11.8 0.2 2.5 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|332796989|ref|YP_004458489.1| - 0.031 14.7 0.0 0.08 13.4 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Chordopox_A35R PF05989.12 gi|332796989|ref|YP_004458489.1| - 0.039 13.8 0.1 0.074 12.9 0.1 1.4 1 0 0 1 1 1 0 Chordopoxvirus A35R protein Sacchrp_dh_NADP PF03435.18 gi|332796989|ref|YP_004458489.1| - 0.08 13.2 0.2 0.29 11.4 0.0 2.0 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain PGK PF00162.19 gi|332796990|ref|YP_004458490.1| - 7.1e-77 258.9 0.2 7.9e-77 258.7 0.2 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF3781 PF12636.7 gi|332796992|ref|YP_004458492.1| - 0.007 16.2 2.1 0.021 14.7 1.1 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF3781) MADF_DNA_bdg PF10545.9 gi|332796992|ref|YP_004458492.1| - 0.0096 16.2 0.2 0.018 15.4 0.2 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase transcription factor Myb/SANT-like HTH_38 PF13936.6 gi|332796992|ref|YP_004458492.1| - 0.011 15.5 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|332796992|ref|YP_004458492.1| - 0.019 14.8 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|332796992|ref|YP_004458492.1| - 0.021 14.9 0.0 0.034 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain UBA_6 PF18039.1 gi|332796992|ref|YP_004458492.1| - 0.064 13.2 0.1 0.29 11.1 0.1 2.0 1 1 0 1 1 1 0 UBA-like domain HTH_Tnp_ISL3 PF13542.6 gi|332796992|ref|YP_004458492.1| - 0.17 11.3 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 DUF746 PF05344.11 gi|332796992|ref|YP_004458492.1| - 0.19 11.6 0.0 0.31 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF746) Clp_N PF02861.20 gi|332796992|ref|YP_004458492.1| - 0.2 11.8 0.0 0.31 11.2 0.0 1.4 1 0 0 1 1 1 0 Clp amino terminal domain, pathogenicity island component DUF4342 PF14242.6 gi|332796994|ref|YP_004458494.1| - 0.00026 20.9 4.7 0.15 12.0 0.7 3.1 3 0 0 3 3 3 1 Domain of unknown function (DUF4342) DUF2097 PF09870.9 gi|332796994|ref|YP_004458494.1| - 0.0021 18.2 2.8 0.32 11.2 0.2 3.0 3 0 0 3 3 3 1 Uncharacterized protein conserved in archaea (DUF2097) SPOR PF05036.13 gi|332796994|ref|YP_004458494.1| - 0.0039 17.5 0.1 0.88 10.0 0.0 2.8 2 1 1 3 3 3 1 Sporulation related domain CBS PF00571.28 gi|332796994|ref|YP_004458494.1| - 0.0057 17.1 3.2 1.7 9.1 0.2 2.6 2 1 0 2 2 2 2 CBS domain NUMOD1 PF07453.13 gi|332796994|ref|YP_004458494.1| - 0.0081 16.4 1.3 0.71 10.2 0.0 2.9 3 0 0 3 3 3 1 NUMOD1 domain DUF2750 PF11042.8 gi|332796994|ref|YP_004458494.1| - 0.0081 16.2 0.0 0.52 10.4 0.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF2750) tRNA_anti-codon PF01336.25 gi|332796994|ref|YP_004458494.1| - 0.0088 16.0 1.2 0.71 9.9 0.0 2.8 1 1 1 2 2 2 1 OB-fold nucleic acid binding domain Aconitase_2_N PF06434.13 gi|332796994|ref|YP_004458494.1| - 0.0091 15.6 0.5 0.014 15.0 0.5 1.4 1 1 0 1 1 1 1 Aconitate hydratase 2 N-terminus Gin PF10764.9 gi|332796994|ref|YP_004458494.1| - 0.011 15.7 1.6 22 5.1 0.0 3.2 3 0 0 3 3 3 0 Inhibitor of sigma-G Gin DUF104 PF01954.16 gi|332796994|ref|YP_004458494.1| - 0.011 16.1 11.9 0.095 13.2 0.1 3.2 1 1 2 3 3 3 0 Protein of unknown function DUF104 Cul7 PF11515.8 gi|332796994|ref|YP_004458494.1| - 0.028 14.7 0.1 9.9 6.5 0.0 3.0 2 1 1 3 3 3 0 Mouse development and cellular proliferation protein Cullin-7 GTP_EFTU_D4 PF14578.6 gi|332796994|ref|YP_004458494.1| - 0.032 14.1 0.5 0.08 12.9 0.2 1.9 1 1 2 3 3 3 0 Elongation factor Tu domain 4 DUF2188 PF09954.9 gi|332796994|ref|YP_004458494.1| - 0.034 14.3 0.1 33 4.7 0.0 3.0 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2188) DnaJ PF00226.31 gi|332796994|ref|YP_004458494.1| - 0.042 14.0 0.1 0.099 12.8 0.1 1.6 1 0 0 1 1 1 0 DnaJ domain DUF3952 PF13130.6 gi|332796994|ref|YP_004458494.1| - 0.057 13.6 1.4 9.7 6.4 0.1 2.5 1 1 1 3 3 3 0 Domain of unknown function (DUF3952) TIP_N PF12457.8 gi|332796994|ref|YP_004458494.1| - 0.12 12.7 3.1 3 8.3 0.9 2.1 1 1 1 2 2 2 0 Tuftelin interacting protein N terminal FumaraseC_C PF10415.9 gi|332796994|ref|YP_004458494.1| - 0.13 12.7 0.9 36 4.9 0.1 2.9 3 0 0 3 3 3 0 Fumarase C C-terminus SNase PF00565.17 gi|332796994|ref|YP_004458494.1| - 0.14 12.7 3.2 0.73 10.3 0.6 2.1 1 1 1 2 2 2 0 Staphylococcal nuclease homologue DUF3659 PF12396.8 gi|332796994|ref|YP_004458494.1| - 0.36 10.8 7.1 8.5 6.4 0.2 3.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3659) ETC_C1_NDUFA4 PF04800.12 gi|332796994|ref|YP_004458494.1| - 0.44 10.8 2.3 35 4.8 0.0 2.8 2 1 1 3 3 3 0 ETC complex I subunit conserved region Myb_DNA-bind_4 PF13837.6 gi|332796996|ref|YP_004458496.1| - 0.0034 17.7 0.2 0.0034 17.7 0.2 1.1 1 0 0 1 1 1 1 Myb/SANT-like DNA-binding domain HKR_ArcB_TM PF18415.1 gi|332796999|ref|YP_004458499.1| - 0.18 12.6 3.5 0.32 11.8 3.5 1.4 1 0 0 1 1 1 0 Histidine kinase receptor ArcB trans-membrane domain TaqI_C PF12950.7 gi|332796999|ref|YP_004458499.1| - 0.21 11.6 2.4 0.22 11.6 0.3 1.9 1 1 1 2 2 2 0 TaqI-like C-terminal specificity domain UPF0051 PF01458.17 gi|332797000|ref|YP_004458500.1| - 6.5e-37 127.3 0.5 8.5e-37 126.9 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|332797001|ref|YP_004458501.1| - 9.7e-66 221.6 0.0 1.3e-65 221.2 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) DUF4295 PF14128.6 gi|332797001|ref|YP_004458501.1| - 0.081 12.8 0.1 0.23 11.3 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4295) ABC_tran PF00005.27 gi|332797002|ref|YP_004458502.1| - 9.6e-23 81.2 0.1 1.3e-22 80.8 0.1 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|332797002|ref|YP_004458502.1| - 2.9e-08 33.4 0.4 6.6e-08 32.3 0.4 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|332797002|ref|YP_004458502.1| - 3.9e-07 30.2 0.1 0.0096 15.8 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|332797002|ref|YP_004458502.1| - 0.0024 17.6 0.4 0.0053 16.5 0.4 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332797002|ref|YP_004458502.1| - 0.007 16.9 0.8 0.0097 16.4 0.8 1.6 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|332797002|ref|YP_004458502.1| - 0.0093 14.7 1.6 0.048 12.3 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|332797002|ref|YP_004458502.1| - 0.014 15.1 0.2 0.024 14.4 0.2 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_27 PF13514.6 gi|332797002|ref|YP_004458502.1| - 0.031 13.8 0.0 0.059 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|332797002|ref|YP_004458502.1| - 0.039 13.5 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|332797002|ref|YP_004458502.1| - 0.058 13.3 0.1 0.094 12.6 0.1 1.4 1 0 0 1 1 1 0 RsgA GTPase DUF1439 PF07273.12 gi|332797002|ref|YP_004458502.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1439) AAA PF00004.29 gi|332797002|ref|YP_004458502.1| - 0.088 13.2 0.3 0.23 11.9 0.2 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MazE_antitoxin PF04014.18 gi|332797003|ref|YP_004458503.1| - 1.6e-08 34.3 0.1 3.5e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Cbl_N PF02262.16 gi|332797003|ref|YP_004458503.1| - 0.0071 16.4 1.3 0.015 15.3 0.2 2.0 2 2 0 2 2 2 1 CBL proto-oncogene N-terminal domain 1 PTR PF12789.7 gi|332797003|ref|YP_004458503.1| - 0.046 13.8 0.2 0.11 12.6 0.2 1.5 1 0 0 1 1 1 0 Phage tail repeat like DUF758 PF05527.11 gi|332797003|ref|YP_004458503.1| - 0.047 13.7 5.9 3.9 7.4 5.7 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF758) FAM194 PF14977.6 gi|332797003|ref|YP_004458503.1| - 0.075 12.3 0.8 0.15 11.3 0.1 1.8 2 0 0 2 2 2 0 FAM194 protein zinc_ribbon_16 PF17034.5 gi|332797003|ref|YP_004458503.1| - 0.11 12.7 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Zinc-ribbon like family Het-C PF07217.11 gi|332797003|ref|YP_004458503.1| - 0.35 9.3 3.7 0.46 8.9 3.7 1.2 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C DUF948 PF06103.11 gi|332797003|ref|YP_004458503.1| - 1.2 9.4 6.1 2 8.7 2.3 2.9 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Mnd1 PF03962.15 gi|332797003|ref|YP_004458503.1| - 5.1 7.5 6.6 2.9 8.3 1.3 3.2 4 0 0 4 4 4 0 Mnd1 HTH domain DUF3997 PF13162.6 gi|332797004|ref|YP_004458504.1| - 0.039 14.2 2.4 0.05 13.9 1.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3997) HSP20 PF00011.21 gi|332797004|ref|YP_004458504.1| - 0.093 12.9 3.6 0.2 11.8 0.4 2.5 2 1 0 2 2 2 0 Hsp20/alpha crystallin family PAZ PF02170.22 gi|332797004|ref|YP_004458504.1| - 0.38 10.6 5.7 0.46 10.3 5.7 1.1 1 0 0 1 1 1 0 PAZ domain PAC2 PF09754.9 gi|332797005|ref|YP_004458505.1| - 7e-37 127.5 0.0 8e-37 127.3 0.0 1.0 1 0 0 1 1 1 1 PAC2 family GCV_H PF01597.19 gi|332797006|ref|YP_004458506.1| - 7.1e-46 155.1 0.9 8e-46 154.9 0.9 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|332797006|ref|YP_004458506.1| - 7.6e-05 22.5 0.2 0.00016 21.4 0.2 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|332797006|ref|YP_004458506.1| - 0.0068 16.3 0.1 0.011 15.6 0.1 1.3 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain Biotin_lipoyl_2 PF13533.6 gi|332797006|ref|YP_004458506.1| - 0.021 14.6 0.5 0.66 9.9 0.0 2.4 1 1 1 2 2 2 0 Biotin-lipoyl like Peptidase_M23 PF01551.22 gi|332797006|ref|YP_004458506.1| - 0.085 13.1 0.1 1.8 8.9 0.1 2.3 1 1 1 2 2 2 0 Peptidase family M23 GCV_T PF01571.21 gi|332797007|ref|YP_004458507.1| - 3.1e-69 233.2 0.0 3.7e-69 233.0 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|332797007|ref|YP_004458507.1| - 1.1e-16 60.5 0.0 1.9e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DUF3970 PF13113.6 gi|332797007|ref|YP_004458507.1| - 0.15 12.3 0.2 0.32 11.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3970) GDC-P PF02347.16 gi|332797008|ref|YP_004458508.1| - 3.4e-115 385.3 0.0 4.2e-115 385.0 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|332797008|ref|YP_004458508.1| - 2.5e-05 23.4 0.0 3.8e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|332797008|ref|YP_004458508.1| - 0.0017 16.9 0.3 0.0058 15.2 0.0 1.8 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|332797008|ref|YP_004458508.1| - 0.16 11.1 0.0 0.29 10.3 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class I and II GDC-P PF02347.16 gi|332797009|ref|YP_004458509.1| - 1.1e-18 67.4 0.0 1.8e-17 63.3 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|332797009|ref|YP_004458509.1| - 1.5e-08 34.0 0.1 4.3e-08 32.5 0.1 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|332797009|ref|YP_004458509.1| - 0.011 15.1 0.1 0.017 14.5 0.1 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Peptidase_S24 PF00717.23 gi|332797010|ref|YP_004458510.1| - 2.1e-05 24.4 0.1 3.3e-05 23.8 0.1 1.3 1 0 0 1 1 1 1 Peptidase S24-like DZR PF12773.7 gi|332797011|ref|YP_004458511.1| - 8.3e-05 22.5 0.1 0.00013 21.9 0.1 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|332797011|ref|YP_004458511.1| - 0.00019 21.0 5.0 0.048 13.4 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain CpXC PF14353.6 gi|332797011|ref|YP_004458511.1| - 0.00023 21.2 0.0 0.00032 20.7 0.0 1.2 1 0 0 1 1 1 1 CpXC protein TF_Zn_Ribbon PF08271.12 gi|332797011|ref|YP_004458511.1| - 0.0011 18.4 5.7 0.29 10.7 0.1 3.1 3 0 0 3 3 3 2 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|332797011|ref|YP_004458511.1| - 0.0013 18.1 6.3 0.18 11.3 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|332797011|ref|YP_004458511.1| - 0.0017 18.1 0.4 0.29 10.9 0.0 2.3 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.9 gi|332797011|ref|YP_004458511.1| - 0.0023 18.0 2.2 0.4 10.8 0.4 2.2 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.12 gi|332797011|ref|YP_004458511.1| - 0.0026 17.7 0.9 0.3 11.1 0.0 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.10 gi|332797011|ref|YP_004458511.1| - 0.003 17.7 1.1 0.71 10.0 0.2 2.3 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|332797011|ref|YP_004458511.1| - 0.0032 17.4 0.2 1.8 8.6 0.0 2.2 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-IS66 PF13005.7 gi|332797011|ref|YP_004458511.1| - 0.008 16.6 1.5 0.018 15.5 0.4 2.1 2 1 0 2 2 1 1 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.6 gi|332797011|ref|YP_004458511.1| - 0.0091 15.9 0.9 4.2 7.4 0.1 2.6 2 0 0 2 2 2 1 Nudix N-terminal OrfB_Zn_ribbon PF07282.11 gi|332797011|ref|YP_004458511.1| - 0.0096 15.8 0.1 4.1 7.4 0.0 2.3 2 0 0 2 2 2 1 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|332797011|ref|YP_004458511.1| - 0.013 16.1 0.5 4.9 7.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-NADH-PPase PF09297.11 gi|332797011|ref|YP_004458511.1| - 0.024 14.3 0.7 5.9 6.6 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF1272 PF06906.11 gi|332797011|ref|YP_004458511.1| - 0.026 14.6 0.6 5.4 7.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf_Rg PF17915.1 gi|332797011|ref|YP_004458511.1| - 0.027 13.9 2.0 5.2 6.6 0.1 2.4 2 0 0 2 2 2 0 Reverse gyrase zinc finger DUF1610 PF07754.11 gi|332797011|ref|YP_004458511.1| - 0.028 14.4 9.0 0.65 10.0 0.9 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Prim_Zn_Ribbon PF08273.12 gi|332797011|ref|YP_004458511.1| - 0.029 14.6 1.0 5.4 7.4 0.0 2.4 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.10 gi|332797011|ref|YP_004458511.1| - 0.033 13.9 1.9 1.1 9.0 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.18 gi|332797011|ref|YP_004458511.1| - 0.041 13.7 3.5 0.18 11.7 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|332797011|ref|YP_004458511.1| - 0.059 13.3 2.7 3.5 7.6 0.2 2.6 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|332797011|ref|YP_004458511.1| - 0.067 12.9 1.9 2.4 8.0 0.2 2.4 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_9 PF14369.6 gi|332797011|ref|YP_004458511.1| - 0.068 13.4 0.8 8 6.8 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon zf-FPG_IleRS PF06827.14 gi|332797011|ref|YP_004458511.1| - 0.09 12.7 1.6 14 5.6 0.1 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C3H2C3 PF17122.5 gi|332797011|ref|YP_004458511.1| - 0.11 12.5 1.6 1.7 8.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger Ribosomal_L32p PF01783.23 gi|332797011|ref|YP_004458511.1| - 0.12 12.6 1.4 9.2 6.6 0.1 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family Prok-RING_1 PF14446.6 gi|332797011|ref|YP_004458511.1| - 0.13 12.2 2.0 1.7 8.6 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-TFIIB PF13453.6 gi|332797011|ref|YP_004458511.1| - 0.13 11.6 1.9 2.8 7.4 0.2 2.5 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-HIT PF04438.16 gi|332797011|ref|YP_004458511.1| - 0.18 11.7 3.3 2.7 7.9 0.2 2.1 2 0 0 2 2 2 0 HIT zinc finger DUF3039 PF11238.8 gi|332797011|ref|YP_004458511.1| - 0.19 11.5 3.0 5 7.0 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) zf-tcix PF14952.6 gi|332797011|ref|YP_004458511.1| - 0.19 11.3 2.3 5 6.8 0.2 2.3 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding zf_UBZ PF18439.1 gi|332797011|ref|YP_004458511.1| - 0.39 10.4 2.6 13 5.5 0.2 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF35_N PF12172.8 gi|332797011|ref|YP_004458511.1| - 0.39 10.6 1.5 17 5.4 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_ribbon_SprT PF17283.2 gi|332797011|ref|YP_004458511.1| - 0.39 10.7 4.9 7.2 6.6 1.5 2.2 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-RING_7 PF02591.15 gi|332797011|ref|YP_004458511.1| - 0.44 10.8 6.6 1.6 8.9 0.3 2.9 3 0 0 3 3 3 0 C4-type zinc ribbon domain Rubredoxin_2 PF18073.1 gi|332797011|ref|YP_004458511.1| - 0.57 9.9 5.7 2 8.2 0.8 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Sgf11 PF08209.11 gi|332797011|ref|YP_004458511.1| - 0.66 9.6 3.2 15 5.3 0.4 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DNA_RNApol_7kD PF03604.13 gi|332797011|ref|YP_004458511.1| - 0.89 9.3 3.7 13 5.5 0.3 2.4 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ACC PF17848.1 gi|332797011|ref|YP_004458511.1| - 1.1 9.4 5.0 3.8 7.7 0.9 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain Enolase_C PF00113.22 gi|332797012|ref|YP_004458512.1| - 3.5e-99 331.8 0.3 4.9e-99 331.3 0.3 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|332797012|ref|YP_004458512.1| - 3.2e-41 140.6 0.1 5.3e-41 139.9 0.1 1.4 1 0 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|332797012|ref|YP_004458512.1| - 3e-08 33.5 0.0 4.4e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like DUF2231 PF09990.9 gi|332797013|ref|YP_004458513.1| - 0.21 12.1 4.0 0.32 11.5 4.0 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) L_HMGIC_fpl PF10242.9 gi|332797013|ref|YP_004458513.1| - 0.33 11.2 4.6 0.35 11.1 4.6 1.0 1 0 0 1 1 1 0 Lipoma HMGIC fusion partner-like protein SecE PF00584.20 gi|332797013|ref|YP_004458513.1| - 9 6.3 12.9 0.28 11.1 2.6 2.2 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex CdvA PF18822.1 gi|332797014|ref|YP_004458514.1| - 8.1e-38 129.0 12.8 1.2e-37 128.5 12.8 1.2 1 0 0 1 1 1 1 CdvA-like coiled-coil domain FliT PF05400.13 gi|332797014|ref|YP_004458514.1| - 0.028 15.2 2.3 0.028 15.2 2.3 1.7 2 0 0 2 2 2 0 Flagellar protein FliT Ribosomal_L19e PF01280.20 gi|332797014|ref|YP_004458514.1| - 0.036 14.1 3.0 0.076 13.1 3.0 1.6 1 0 0 1 1 1 0 Ribosomal protein L19e DUF948 PF06103.11 gi|332797014|ref|YP_004458514.1| - 0.11 12.8 2.7 0.16 12.2 1.4 1.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) FapA PF03961.13 gi|332797014|ref|YP_004458514.1| - 0.13 10.9 8.2 0.33 9.5 8.3 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A Syntaxin-6_N PF09177.11 gi|332797014|ref|YP_004458514.1| - 0.17 12.5 4.8 0.48 11.0 3.9 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal YlqD PF11068.8 gi|332797014|ref|YP_004458514.1| - 0.2 12.0 6.6 0.17 12.3 4.0 2.0 1 1 1 2 2 2 0 YlqD protein YojJ PF10372.9 gi|332797014|ref|YP_004458514.1| - 0.39 10.8 5.0 0.35 11.0 0.7 2.8 3 1 0 3 3 3 0 Bacterial membrane-spanning protein N-terminus CLZ PF16526.5 gi|332797014|ref|YP_004458514.1| - 0.72 10.3 6.1 0.21 12.0 1.4 2.6 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels ASL_C PF08328.11 gi|332797014|ref|YP_004458514.1| - 0.92 9.6 6.1 2.4 8.3 0.6 2.5 1 1 1 2 2 2 0 Adenylosuccinate lyase C-terminal DUF883 PF05957.13 gi|332797014|ref|YP_004458514.1| - 1.3 9.7 3.8 1.6 9.3 1.4 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) L31 PF09784.9 gi|332797014|ref|YP_004458514.1| - 2.4 8.6 7.1 0.46 10.9 2.6 2.0 1 1 1 2 2 2 0 Mitochondrial ribosomal protein L31 Prefoldin_2 PF01920.20 gi|332797014|ref|YP_004458514.1| - 2.5 8.1 12.3 1.6 8.7 1.0 2.9 1 1 2 3 3 3 0 Prefoldin subunit Snf7 PF03357.21 gi|332797015|ref|YP_004458515.1| - 0.00028 20.5 5.0 0.00028 20.5 5.0 1.7 1 1 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.12 gi|332797015|ref|YP_004458515.1| - 0.047 13.7 0.7 8.6 6.4 0.2 2.4 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus HTH_36 PF13730.6 gi|332797015|ref|YP_004458515.1| - 0.13 12.3 0.0 0.27 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|332797016|ref|YP_004458516.1| - 1.9e-39 135.1 0.0 4.2e-37 127.5 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MIT PF04212.18 gi|332797016|ref|YP_004458516.1| - 1.2e-11 44.4 1.1 4e-11 42.8 1.1 1.9 1 0 0 1 1 1 1 MIT (microtubule interacting and transport) domain AAA_lid_3 PF17862.1 gi|332797016|ref|YP_004458516.1| - 2.1e-11 43.5 0.7 4.1e-11 42.5 0.0 1.9 2 0 0 2 2 1 1 AAA+ lid domain Vps4_C PF09336.10 gi|332797016|ref|YP_004458516.1| - 1.8e-09 37.5 1.1 4.7e-09 36.1 0.3 2.1 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain AAA_2 PF07724.14 gi|332797016|ref|YP_004458516.1| - 6.9e-08 32.8 0.0 2e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|332797016|ref|YP_004458516.1| - 1.3e-06 28.2 0.0 7.8e-06 25.7 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_14 PF13173.6 gi|332797016|ref|YP_004458516.1| - 9.4e-06 25.7 0.4 4.2e-05 23.6 0.0 2.2 3 0 0 3 3 3 1 AAA domain AAA_5 PF07728.14 gi|332797016|ref|YP_004458516.1| - 4.9e-05 23.3 0.2 0.00088 19.3 0.0 2.9 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|332797016|ref|YP_004458516.1| - 0.0002 21.6 0.0 0.0086 16.4 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332797016|ref|YP_004458516.1| - 0.00022 21.6 0.0 0.023 15.1 0.0 2.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_24 PF13479.6 gi|332797016|ref|YP_004458516.1| - 0.00042 20.1 0.0 0.0012 18.6 0.0 1.9 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|332797016|ref|YP_004458516.1| - 0.0011 18.3 0.0 0.0024 17.1 0.0 1.6 1 0 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|332797016|ref|YP_004458516.1| - 0.0017 18.7 0.1 0.01 16.2 0.0 2.4 2 1 0 2 2 2 1 RNA helicase Mg_chelatase PF01078.21 gi|332797016|ref|YP_004458516.1| - 0.0065 15.9 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI TPR_7 PF13176.6 gi|332797016|ref|YP_004458516.1| - 0.0073 16.3 0.1 0.022 14.8 0.1 1.9 1 1 0 1 1 1 1 Tetratricopeptide repeat ResIII PF04851.15 gi|332797016|ref|YP_004458516.1| - 0.013 15.5 0.1 0.31 11.0 0.0 2.3 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit TPR_1 PF00515.28 gi|332797016|ref|YP_004458516.1| - 0.014 15.2 0.2 0.078 12.8 0.1 2.3 2 0 0 2 2 2 0 Tetratricopeptide repeat IstB_IS21 PF01695.17 gi|332797016|ref|YP_004458516.1| - 0.02 14.6 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein TPR_8 PF13181.6 gi|332797016|ref|YP_004458516.1| - 0.021 15.0 0.2 0.11 12.7 0.2 2.4 1 0 0 1 1 1 0 Tetratricopeptide repeat ABC_tran PF00005.27 gi|332797016|ref|YP_004458516.1| - 0.028 14.9 0.0 0.34 11.4 0.0 2.3 2 0 0 2 2 2 0 ABC transporter NACHT PF05729.12 gi|332797016|ref|YP_004458516.1| - 0.03 14.2 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain AAA_7 PF12775.7 gi|332797016|ref|YP_004458516.1| - 0.03 13.8 0.0 0.073 12.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region Bac_DnaA PF00308.18 gi|332797016|ref|YP_004458516.1| - 0.051 13.4 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 Bacterial dnaA protein AAA_33 PF13671.6 gi|332797016|ref|YP_004458516.1| - 0.053 13.7 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|332797016|ref|YP_004458516.1| - 0.067 13.1 4.9 4.6 7.1 0.0 3.4 3 1 1 4 4 4 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|332797016|ref|YP_004458516.1| - 0.075 12.6 0.0 0.36 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|332797016|ref|YP_004458516.1| - 0.08 12.0 0.0 0.19 10.8 0.0 1.6 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|332797016|ref|YP_004458516.1| - 0.083 13.3 0.0 0.45 10.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|332797016|ref|YP_004458516.1| - 0.089 12.1 0.0 0.26 10.5 0.0 1.8 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|332797016|ref|YP_004458516.1| - 0.091 13.3 0.1 1 9.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain TPR_2 PF07719.17 gi|332797016|ref|YP_004458516.1| - 0.13 12.5 2.0 0.19 11.9 0.4 2.3 2 0 0 2 2 1 0 Tetratricopeptide repeat Viral_helicase1 PF01443.18 gi|332797016|ref|YP_004458516.1| - 0.19 11.5 0.0 0.35 10.6 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TPR_6 PF13174.6 gi|332797016|ref|YP_004458516.1| - 0.26 12.0 0.9 7.1 7.5 0.1 3.3 2 1 0 2 2 2 0 Tetratricopeptide repeat Topoisom_bac PF01131.20 gi|332797017|ref|YP_004458517.1| - 3.3e-110 368.9 0.0 4e-110 368.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|332797017|ref|YP_004458517.1| - 9.9e-08 32.2 1.6 1.8e-06 28.1 0.0 3.1 3 0 0 3 3 3 1 Toprim domain RNA_pol_Rpb6 PF01192.22 gi|332797018|ref|YP_004458518.1| - 7e-12 45.1 0.1 1.1e-11 44.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb6 Pox_RNA_Pol_19 PF05320.12 gi|332797018|ref|YP_004458518.1| - 0.009 16.0 0.2 0.01 15.8 0.2 1.1 1 0 0 1 1 1 1 Poxvirus DNA-directed RNA polymerase 19 kDa subunit Aminotran_5 PF00266.19 gi|332797019|ref|YP_004458519.1| - 8.3e-29 100.7 0.0 9.9e-29 100.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_1_2 PF00155.21 gi|332797019|ref|YP_004458519.1| - 4.6e-07 29.3 0.0 7e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|332797019|ref|YP_004458519.1| - 1.9e-05 23.4 0.1 4.4e-05 22.2 0.1 1.6 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.21 gi|332797019|ref|YP_004458519.1| - 0.0018 17.6 0.0 0.0028 17.0 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase SAP PF02037.27 gi|332797019|ref|YP_004458519.1| - 0.014 15.2 0.8 0.037 13.8 0.8 1.7 1 0 0 1 1 1 0 SAP domain DUF684 PF05075.14 gi|332797019|ref|YP_004458519.1| - 0.13 11.3 0.1 0.46 9.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF684) 2-Hacid_dh_C PF02826.19 gi|332797020|ref|YP_004458520.1| - 4.9e-48 162.8 0.9 1.7e-47 161.0 0.3 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|332797020|ref|YP_004458520.1| - 1.5e-35 121.8 0.5 1.8e-35 121.5 0.5 1.0 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AdoHcyase_NAD PF00670.21 gi|332797020|ref|YP_004458520.1| - 5.8e-06 26.5 0.8 5.8e-06 26.5 0.8 2.0 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_2 PF03446.15 gi|332797020|ref|YP_004458520.1| - 5.5e-05 23.4 2.1 0.00015 21.9 0.6 2.3 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|332797020|ref|YP_004458520.1| - 0.0013 18.3 0.5 0.015 14.8 0.2 2.3 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CNP1 PF08750.11 gi|332797020|ref|YP_004458520.1| - 0.065 13.2 0.1 0.15 12.0 0.1 1.6 1 1 0 1 1 1 0 CNP1-like family Lsm_C PF14894.6 gi|332797020|ref|YP_004458520.1| - 0.7 9.7 3.4 0.54 10.1 0.9 2.0 2 0 0 2 2 2 0 Lsm C-terminal HhH-GPD PF00730.25 gi|332797021|ref|YP_004458521.1| - 0.089 13.3 0.0 0.2 12.1 0.0 1.7 1 1 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|332797021|ref|YP_004458521.1| - 0.13 12.2 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif Prok-RING_1 PF14446.6 gi|332797023|ref|YP_004458523.1| - 0.0001 22.1 4.4 0.0019 18.1 1.7 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 DZR PF12773.7 gi|332797023|ref|YP_004458523.1| - 0.00092 19.2 6.2 0.15 12.1 2.5 2.1 1 1 1 2 2 2 2 Double zinc ribbon Zn_ribbon_SprT PF17283.2 gi|332797023|ref|YP_004458523.1| - 0.0035 17.2 10.4 2.5 8.1 0.3 3.2 3 0 0 3 3 3 2 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|332797023|ref|YP_004458523.1| - 0.006 16.7 5.0 0.0087 16.2 3.0 2.0 2 0 0 2 2 2 1 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|332797023|ref|YP_004458523.1| - 0.0072 16.3 6.0 0.11 12.5 6.0 2.2 1 1 0 1 1 1 1 zinc-ribbons PhnA_Zn_Ribbon PF08274.12 gi|332797023|ref|YP_004458523.1| - 0.012 15.6 1.3 1.3 9.1 0.1 2.4 2 0 0 2 2 2 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|332797023|ref|YP_004458523.1| - 0.016 15.2 5.3 0.058 13.4 1.9 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-BED PF02892.15 gi|332797023|ref|YP_004458523.1| - 0.028 14.4 10.6 0.47 10.5 0.3 2.9 1 1 2 3 3 3 0 BED zinc finger zf-C4_Topoisom PF01396.19 gi|332797023|ref|YP_004458523.1| - 0.034 13.9 7.9 0.19 11.5 0.4 2.9 3 0 0 3 3 3 0 Topoisomerase DNA binding C4 zinc finger DUF1272 PF06906.11 gi|332797023|ref|YP_004458523.1| - 0.041 14.0 7.3 0.19 11.9 7.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.6 gi|332797023|ref|YP_004458523.1| - 0.052 13.4 9.3 23 5.0 9.4 2.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-AN1 PF01428.16 gi|332797023|ref|YP_004458523.1| - 0.079 13.1 8.9 1.1 9.4 3.8 2.5 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2HC5 PF06221.13 gi|332797023|ref|YP_004458523.1| - 0.096 12.7 5.2 0.38 10.8 2.1 2.5 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type DUF4379 PF14311.6 gi|332797023|ref|YP_004458523.1| - 0.11 12.9 6.7 0.18 12.2 6.7 1.5 1 1 0 1 1 1 0 Probable Zinc-ribbon domain Rep_fac-A_C PF08646.10 gi|332797023|ref|YP_004458523.1| - 0.11 12.2 4.0 0.14 11.9 4.0 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Zn_Tnp_IS1595 PF12760.7 gi|332797023|ref|YP_004458523.1| - 0.14 12.2 10.5 0.33 11.0 1.1 2.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|332797023|ref|YP_004458523.1| - 0.15 12.5 12.0 0.28 11.7 3.1 3.1 2 1 1 3 3 3 0 Zinc-finger double domain zinc_ribbon_9 PF14369.6 gi|332797023|ref|YP_004458523.1| - 0.18 12.1 7.8 1.8 8.9 0.7 2.6 2 1 0 2 2 2 0 zinc-ribbon zf-ribbon_3 PF13248.6 gi|332797023|ref|YP_004458523.1| - 0.2 11.1 0.4 0.2 11.1 0.4 3.0 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|332797023|ref|YP_004458523.1| - 0.25 11.1 0.4 0.25 11.1 0.4 3.5 3 1 0 3 3 3 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|332797023|ref|YP_004458523.1| - 0.31 11.1 6.1 0.49 10.5 0.6 2.8 3 0 0 3 3 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|332797023|ref|YP_004458523.1| - 0.68 9.5 11.2 1.1 8.9 0.5 3.0 3 0 0 3 3 3 0 TFIIB zinc-binding DiS_P_DiS PF06750.13 gi|332797023|ref|YP_004458523.1| - 0.85 9.8 4.9 15 5.8 0.0 2.8 2 1 0 2 2 2 0 Bacterial Peptidase A24 N-terminal domain ADK_lid PF05191.14 gi|332797023|ref|YP_004458523.1| - 1 9.4 8.7 1.7 8.7 5.9 2.3 2 1 0 2 2 2 0 Adenylate kinase, active site lid C1_2 PF03107.16 gi|332797023|ref|YP_004458523.1| - 1.1 9.7 9.2 2.4 8.6 7.1 2.2 1 1 1 2 2 2 0 C1 domain Cys_rich_CPXG PF14255.6 gi|332797023|ref|YP_004458523.1| - 1.2 9.1 7.8 1.9 8.4 0.2 3.0 3 0 0 3 3 3 0 Cysteine-rich CPXCG zf-TFIIB PF13453.6 gi|332797023|ref|YP_004458523.1| - 1.3 8.4 7.8 2 7.8 0.1 2.5 3 0 0 3 3 2 0 Transcription factor zinc-finger zf-Di19 PF05605.12 gi|332797023|ref|YP_004458523.1| - 1.3 9.3 11.0 3.7 7.9 0.2 3.2 2 1 1 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding Mu-like_Com PF10122.9 gi|332797023|ref|YP_004458523.1| - 2.1 7.9 9.4 4.7 6.7 3.2 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-Mss51 PF13824.6 gi|332797023|ref|YP_004458523.1| - 2.6 8.2 6.5 4.9 7.3 1.1 2.6 2 1 1 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-B_box PF00643.24 gi|332797023|ref|YP_004458523.1| - 2.8 8.2 10.9 9 6.6 6.5 2.8 2 1 0 2 2 2 0 B-box zinc finger zf-LITAF-like PF10601.9 gi|332797023|ref|YP_004458523.1| - 3 8.2 9.8 11 6.3 0.5 3.0 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain TFIIS_C PF01096.18 gi|332797023|ref|YP_004458523.1| - 3.4 7.6 9.9 1.2 9.0 1.1 2.7 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-C2H2_4 PF13894.6 gi|332797023|ref|YP_004458523.1| - 3.5 8.7 13.3 40 5.4 3.3 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger zf-IS66 PF13005.7 gi|332797023|ref|YP_004458523.1| - 3.6 8.1 10.3 2.6 8.5 0.1 2.9 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 tRNA-synt_1g PF09334.11 gi|332797023|ref|YP_004458523.1| - 5.7 5.6 5.4 10 4.8 0.6 1.9 1 1 1 2 2 2 0 tRNA synthetases class I (M) FANCL_C PF11793.8 gi|332797023|ref|YP_004458523.1| - 9.7 6.4 10.5 2.9 8.1 0.3 2.7 2 1 0 2 2 2 0 FANCL C-terminal domain EAL PF00563.20 gi|332797024|ref|YP_004458524.1| - 0.013 15.0 0.0 0.014 14.9 0.0 1.1 1 0 0 1 1 1 0 EAL domain ATP_bind_1 PF03029.17 gi|332797024|ref|YP_004458524.1| - 0.094 12.5 0.0 0.099 12.4 0.0 1.0 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein DapH_N PF08503.10 gi|332797024|ref|YP_004458524.1| - 0.11 12.7 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Tetrahydrodipicolinate succinyltransferase N-terminal NAD_binding_8 PF13450.6 gi|332797026|ref|YP_004458526.1| - 4e-07 30.2 0.0 8.1e-07 29.2 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|332797026|ref|YP_004458526.1| - 9.4e-05 22.4 0.0 0.00017 21.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|332797026|ref|YP_004458526.1| - 0.00011 22.7 0.0 0.0005 20.6 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|332797026|ref|YP_004458526.1| - 0.00089 18.9 0.1 0.00098 18.8 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|332797026|ref|YP_004458526.1| - 0.001 18.3 0.0 0.0019 17.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|332797026|ref|YP_004458526.1| - 0.0017 17.5 0.0 0.099 11.7 0.0 2.3 2 0 0 2 2 2 1 Lycopene cyclase protein ApbA PF02558.16 gi|332797026|ref|YP_004458526.1| - 0.0038 16.9 0.0 0.0073 16.0 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|332797026|ref|YP_004458526.1| - 0.0075 16.3 0.0 0.046 13.7 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|332797026|ref|YP_004458526.1| - 0.0077 15.8 0.0 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 gi|332797026|ref|YP_004458526.1| - 0.015 14.4 0.0 0.029 13.5 0.0 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A NAD_binding_2 PF03446.15 gi|332797026|ref|YP_004458526.1| - 0.025 14.7 0.0 0.051 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase HI0933_like PF03486.14 gi|332797026|ref|YP_004458526.1| - 0.026 13.2 0.0 0.043 12.5 0.0 1.3 1 0 0 1 1 1 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|332797026|ref|YP_004458526.1| - 0.048 12.9 0.0 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 FAD binding domain DpaA_N PF16924.5 gi|332797026|ref|YP_004458526.1| - 0.11 12.6 0.0 0.25 11.4 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain AlaDh_PNT_C PF01262.21 gi|332797026|ref|YP_004458526.1| - 0.24 10.6 0.0 0.36 10.1 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain tRNA-synt_1 PF00133.22 gi|332797027|ref|YP_004458527.1| - 9.1e-124 413.9 0.2 2.4e-122 409.2 0.2 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|332797027|ref|YP_004458527.1| - 5e-31 107.7 2.7 1.1e-30 106.5 2.7 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|332797027|ref|YP_004458527.1| - 9.3e-24 83.9 0.0 4.2e-10 38.9 0.0 3.5 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|332797027|ref|YP_004458527.1| - 4.2e-07 29.7 0.1 8.6e-06 25.4 0.1 2.6 1 1 1 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 DUF840 PF05801.11 gi|332797027|ref|YP_004458527.1| - 0.0027 17.7 2.0 0.0062 16.6 2.0 1.5 1 0 0 1 1 1 1 Lagovirus protein of unknown function (DUF840) tRNA-synt_1e PF01406.19 gi|332797027|ref|YP_004458527.1| - 0.011 15.1 0.0 1.7 7.9 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DUF4487 PF14868.6 gi|332797027|ref|YP_004458527.1| - 0.076 11.8 0.1 0.12 11.2 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4487) Ribosomal_S8 PF00410.19 gi|332797027|ref|YP_004458527.1| - 0.097 12.6 3.8 0.14 12.1 0.2 2.5 2 0 0 2 2 2 0 Ribosomal protein S8 zf-ribbon_3 PF13248.6 gi|332797027|ref|YP_004458527.1| - 1.2 8.6 3.2 2.4 7.7 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Aminotran_1_2 PF00155.21 gi|332797028|ref|YP_004458528.1| - 1.5e-77 261.2 0.0 1.8e-77 261.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|332797028|ref|YP_004458528.1| - 1.3e-10 41.2 0.0 1.9e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|332797028|ref|YP_004458528.1| - 1.5e-06 27.4 0.0 3.3e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|332797028|ref|YP_004458528.1| - 7.1e-06 25.5 0.0 1.1e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|332797028|ref|YP_004458528.1| - 0.00023 19.8 0.0 0.00037 19.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme IGPS PF00218.21 gi|332797029|ref|YP_004458529.1| - 3.9e-76 255.6 0.1 4.6e-76 255.4 0.1 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase His_biosynth PF00977.21 gi|332797029|ref|YP_004458529.1| - 0.0002 20.9 0.1 0.0021 17.6 0.0 2.4 2 1 1 3 3 3 1 Histidine biosynthesis protein QRPTase_C PF01729.19 gi|332797029|ref|YP_004458529.1| - 0.0051 16.6 0.1 0.011 15.5 0.0 1.5 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain G3P_antiterm PF04309.12 gi|332797029|ref|YP_004458529.1| - 0.08 12.4 0.1 57 3.1 0.0 3.5 3 1 0 4 4 4 0 Glycerol-3-phosphate responsive antiterminator NMO PF03060.15 gi|332797029|ref|YP_004458529.1| - 0.084 12.3 0.0 3.3 7.0 0.0 2.4 1 1 1 2 2 2 0 Nitronate monooxygenase GATase PF00117.28 gi|332797030|ref|YP_004458530.1| - 4e-48 163.7 0.1 4.4e-48 163.6 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|332797030|ref|YP_004458530.1| - 3.6e-12 46.5 0.1 7.7e-12 45.4 0.1 1.6 1 1 0 1 1 1 1 Peptidase C26 SNO PF01174.19 gi|332797030|ref|YP_004458530.1| - 0.069 13.0 0.1 0.095 12.5 0.1 1.4 1 1 0 1 1 1 0 SNO glutamine amidotransferase family DLH PF01738.18 gi|332797030|ref|YP_004458530.1| - 0.14 11.7 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Dienelactone hydrolase family Chorismate_bind PF00425.18 gi|332797031|ref|YP_004458531.1| - 3.1e-94 315.3 0.0 3.9e-94 315.0 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|332797031|ref|YP_004458531.1| - 2e-17 63.7 0.4 2.5e-13 50.5 0.1 3.9 2 2 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|332797032|ref|YP_004458532.1| - 1.5e-34 119.5 0.1 1.7e-34 119.3 0.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Glycos_transf_3 PF00591.21 gi|332797033|ref|YP_004458533.1| - 3.5e-73 246.3 0.1 4.6e-73 245.9 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|332797033|ref|YP_004458533.1| - 7.7e-15 54.5 0.1 1.8e-14 53.3 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferase family, helical bundle domain Trp_syntA PF00290.20 gi|332797034|ref|YP_004458534.1| - 5.2e-35 120.5 0.0 6.2e-35 120.3 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|332797034|ref|YP_004458534.1| - 8.8e-06 25.3 0.4 2.7e-05 23.8 0.2 1.8 2 0 0 2 2 2 1 Histidine biosynthesis protein PcrB PF01884.17 gi|332797034|ref|YP_004458534.1| - 0.0017 17.8 0.8 0.042 13.3 0.2 2.3 1 1 1 2 2 2 1 PcrB family Ribul_P_3_epim PF00834.19 gi|332797034|ref|YP_004458534.1| - 0.0052 16.2 0.0 0.0079 15.6 0.0 1.3 1 0 0 1 1 1 1 Ribulose-phosphate 3 epimerase family NMO PF03060.15 gi|332797034|ref|YP_004458534.1| - 0.0056 16.1 0.5 0.016 14.6 0.3 1.8 1 1 1 2 2 2 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|332797034|ref|YP_004458534.1| - 0.017 14.2 0.3 0.15 11.1 0.2 2.4 3 0 0 3 3 3 0 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|332797034|ref|YP_004458534.1| - 0.1 11.9 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 Thiamine monophosphate synthase DUF561 PF04481.12 gi|332797034|ref|YP_004458534.1| - 0.15 11.2 0.1 5.8 6.0 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF561) PALP PF00291.25 gi|332797035|ref|YP_004458535.1| - 1.5e-43 149.3 0.0 1.9e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acylphosphatase PF00708.18 gi|332797036|ref|YP_004458536.1| - 1.4e-29 102.3 0.1 1.6e-29 102.2 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase DUF2730 PF10805.8 gi|332797036|ref|YP_004458536.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Inos-1-P_synth PF01658.17 gi|332797037|ref|YP_004458537.1| - 9.8e-31 106.2 0.0 1.9e-30 105.3 0.0 1.5 1 0 0 1 1 1 1 Myo-inositol-1-phosphate synthase NAD_binding_5 PF07994.12 gi|332797037|ref|YP_004458537.1| - 0.0082 15.6 0.0 0.063 12.7 0.0 2.1 2 0 0 2 2 2 1 Myo-inositol-1-phosphate synthase zf-B_box PF00643.24 gi|332797038|ref|YP_004458538.1| - 4.3e-05 23.6 36.0 0.0035 17.5 5.3 4.0 2 1 2 4 4 4 3 B-box zinc finger zf-HIT PF04438.16 gi|332797038|ref|YP_004458538.1| - 0.00023 20.9 5.8 0.00023 20.9 5.8 5.1 2 1 1 3 3 3 1 HIT zinc finger FYVE PF01363.21 gi|332797038|ref|YP_004458538.1| - 0.0077 16.4 31.1 1.1 9.5 16.5 3.9 1 1 1 2 2 2 1 FYVE zinc finger Prok-RING_2 PF14445.6 gi|332797038|ref|YP_004458538.1| - 0.47 10.6 24.3 1.9 8.7 5.5 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 2 DZR PF12773.7 gi|332797038|ref|YP_004458538.1| - 6.8 6.8 26.3 1.9 8.5 2.0 3.4 1 1 1 2 2 2 0 Double zinc ribbon PPDK_N PF01326.19 gi|332797039|ref|YP_004458539.1| - 1.1e-115 386.4 2.9 1.7e-115 385.8 2.9 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|332797039|ref|YP_004458539.1| - 1.4e-81 273.8 0.0 2.2e-81 273.2 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|332797039|ref|YP_004458539.1| - 3.5e-28 97.1 1.0 8.2e-28 95.9 1.0 1.7 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Snf7 PF03357.21 gi|332797040|ref|YP_004458540.1| - 3e-05 23.7 4.3 3.8e-05 23.3 4.3 1.2 1 0 0 1 1 1 1 Snf7 LOH1CR12 PF10158.9 gi|332797040|ref|YP_004458540.1| - 0.00029 20.8 0.4 0.00057 19.9 0.4 1.5 1 0 0 1 1 1 1 Tumour suppressor protein DivIVA PF05103.13 gi|332797040|ref|YP_004458540.1| - 0.038 14.1 4.2 1.5 8.9 1.9 2.5 1 1 1 2 2 2 0 DivIVA protein BLOC1S3 PF15753.5 gi|332797040|ref|YP_004458540.1| - 0.17 12.0 1.8 0.39 10.8 1.8 1.8 1 1 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 MCR_gamma PF02240.16 gi|332797041|ref|YP_004458541.1| - 0.092 12.0 0.2 0.097 11.9 0.2 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase gamma subunit UbiD PF01977.16 gi|332797042|ref|YP_004458542.1| - 7.4e-131 436.7 0.0 8.5e-131 436.5 0.0 1.0 1 0 0 1 1 1 1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase PALP PF00291.25 gi|332797043|ref|YP_004458543.1| - 1.2e-69 235.0 1.1 1.4e-69 234.8 1.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Zn-ribbon_8 PF09723.10 gi|332797043|ref|YP_004458543.1| - 0.0053 16.8 0.2 0.0091 16.1 0.2 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|332797043|ref|YP_004458543.1| - 0.049 13.6 0.2 0.091 12.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Capsid_VP7 PF17071.5 gi|332797043|ref|YP_004458543.1| - 0.16 11.3 0.1 0.23 10.7 0.1 1.1 1 0 0 1 1 1 0 Outer capsid protein VP7 TF_Zn_Ribbon PF08271.12 gi|332797043|ref|YP_004458543.1| - 0.16 11.5 1.1 0.34 10.5 1.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|332797043|ref|YP_004458543.1| - 0.36 10.6 2.5 0.69 9.7 2.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|332797043|ref|YP_004458543.1| - 1.4 8.7 3.4 3 7.6 3.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AA_kinase PF00696.28 gi|332797044|ref|YP_004458544.1| - 2.2e-39 135.5 0.1 3.4e-39 134.9 0.1 1.3 1 0 0 1 1 1 1 Amino acid kinase family DUF5044 PF16447.5 gi|332797044|ref|YP_004458544.1| - 0.001 19.0 0.0 0.0062 16.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF5044) Terminase_3 PF04466.13 gi|332797044|ref|YP_004458544.1| - 0.016 14.8 0.2 0.36 10.3 0.0 2.5 1 1 1 2 2 2 0 Phage terminase large subunit ACT PF01842.25 gi|332797044|ref|YP_004458544.1| - 0.064 13.0 1.0 0.16 11.8 0.3 2.1 2 0 0 2 2 2 0 ACT domain ACT_7 PF13840.6 gi|332797044|ref|YP_004458544.1| - 0.071 12.9 2.9 0.12 12.1 0.8 2.5 3 0 0 3 3 3 0 ACT domain Semialdhyde_dh PF01118.24 gi|332797045|ref|YP_004458545.1| - 7e-33 113.6 0.0 1.2e-32 112.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|332797045|ref|YP_004458545.1| - 9.1e-28 97.6 0.1 1.4e-27 97.0 0.1 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain GFO_IDH_MocA PF01408.22 gi|332797045|ref|YP_004458545.1| - 0.021 15.6 0.0 0.038 14.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_10 PF13460.6 gi|332797045|ref|YP_004458545.1| - 0.029 14.2 0.0 0.053 13.4 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding DapB_N PF01113.20 gi|332797045|ref|YP_004458545.1| - 0.037 14.1 0.1 0.092 12.9 0.0 1.8 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|332797045|ref|YP_004458545.1| - 0.089 13.0 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Epimerase PF01370.21 gi|332797045|ref|YP_004458545.1| - 0.18 11.2 0.0 0.27 10.7 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family PHP_C PF13263.6 gi|332797046|ref|YP_004458546.1| - 2.4e-16 59.2 0.1 4.6e-16 58.3 0.1 1.5 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|332797046|ref|YP_004458546.1| - 3.1e-06 27.6 0.1 3.7e-05 24.1 0.1 2.1 2 0 0 2 2 2 1 PHP domain Nre_N PF04894.12 gi|332797047|ref|YP_004458547.1| - 2.1e-100 336.0 0.4 3.2e-100 335.4 0.4 1.3 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|332797047|ref|YP_004458547.1| - 2.5e-35 120.7 0.1 5.4e-35 119.7 0.1 1.6 1 0 0 1 1 1 1 Archaeal Nre, C-terminal OTCace PF00185.24 gi|332797048|ref|YP_004458548.1| - 2.3e-51 174.0 0.0 3e-51 173.6 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain OTCace_N PF02729.21 gi|332797048|ref|YP_004458548.1| - 4.2e-42 143.7 0.0 6.3e-42 143.1 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HTH_12 PF08461.10 gi|332797049|ref|YP_004458549.1| - 0.00031 20.6 1.0 0.0031 17.4 0.5 2.5 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Ribosomal_S19e PF01090.19 gi|332797049|ref|YP_004458549.1| - 0.0059 16.3 0.1 0.011 15.4 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S19e Penicillinase_R PF03965.16 gi|332797049|ref|YP_004458549.1| - 0.013 15.8 0.0 0.026 14.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF4093 PF13331.6 gi|332797049|ref|YP_004458549.1| - 0.04 14.3 0.0 0.09 13.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4093) DUF4423 PF14394.6 gi|332797049|ref|YP_004458549.1| - 0.083 12.6 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) NAD_kinase PF01513.21 gi|332797050|ref|YP_004458550.1| - 9.4e-58 195.7 0.0 1.1e-57 195.5 0.0 1.0 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|332797050|ref|YP_004458550.1| - 0.00017 21.2 0.1 0.0011 18.6 0.0 2.2 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain Rrf2 PF02082.20 gi|332797051|ref|YP_004458551.1| - 0.00016 22.0 0.0 0.58 10.6 0.0 2.7 3 0 0 3 3 3 2 Transcriptional regulator HTH_45 PF14947.6 gi|332797051|ref|YP_004458551.1| - 0.00068 19.6 2.5 0.00096 19.1 0.1 2.4 3 0 0 3 3 3 1 Winged helix-turn-helix HrcA_DNA-bdg PF03444.15 gi|332797051|ref|YP_004458551.1| - 0.013 15.1 0.1 0.43 10.3 0.0 2.7 3 1 0 3 3 3 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF1804 PF08822.11 gi|332797051|ref|YP_004458551.1| - 0.014 15.4 0.4 0.032 14.2 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1804) TrmB PF01978.19 gi|332797051|ref|YP_004458551.1| - 0.028 14.3 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|332797051|ref|YP_004458551.1| - 0.094 12.6 0.2 0.26 11.2 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GAD-like PF08887.11 gi|332797051|ref|YP_004458551.1| - 0.099 12.4 0.0 0.23 11.2 0.0 1.7 1 0 0 1 1 1 0 GAD-like domain HTH_Crp_2 PF13545.6 gi|332797051|ref|YP_004458551.1| - 0.14 12.2 0.0 0.35 10.9 0.0 1.7 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HEPN_RiboL-PSP PF18735.1 gi|332797051|ref|YP_004458551.1| - 0.95 9.4 10.8 1 9.2 8.4 2.1 2 0 0 2 2 2 0 RiboL-PSP-HEPN DUF365 PF04033.12 gi|332797052|ref|YP_004458552.1| - 0.18 12.1 1.7 0.24 11.7 1.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF365) Lipoprotein_3 PF00938.17 gi|332797053|ref|YP_004458553.1| - 0.012 15.8 0.4 0.49 10.6 0.0 2.8 3 0 0 3 3 3 0 Lipoprotein CTNNBL PF08216.11 gi|332797053|ref|YP_004458553.1| - 0.14 12.3 3.5 0.094 12.9 0.6 2.1 3 0 0 3 3 3 0 Catenin-beta-like, Arm-motif containing nuclear Cpn60_TCP1 PF00118.24 gi|332797055|ref|YP_004458555.1| - 1.9e-176 587.5 15.1 2.2e-176 587.3 15.1 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF438 PF04282.13 gi|332797056|ref|YP_004458556.1| - 0.076 13.0 0.3 0.13 12.2 0.3 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF438) DUF5063 PF16702.5 gi|332797056|ref|YP_004458556.1| - 0.1 12.9 0.2 0.15 12.5 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5063) TrmB PF01978.19 gi|332797057|ref|YP_004458557.1| - 0.0067 16.3 0.9 0.009 15.9 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DpnI_C PF17726.1 gi|332797057|ref|YP_004458557.1| - 0.013 15.6 0.0 0.023 14.8 0.0 1.5 1 1 0 1 1 1 0 Dam-replacing HTH domain DUF4423 PF14394.6 gi|332797057|ref|YP_004458557.1| - 0.019 14.7 0.1 0.028 14.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Stork_head PF10264.9 gi|332797057|ref|YP_004458557.1| - 0.052 13.7 0.1 6.4 7.0 0.0 2.1 1 1 1 2 2 2 0 Winged helix Storkhead-box1 domain Clathrin PF00637.20 gi|332797057|ref|YP_004458557.1| - 0.064 13.1 0.3 0.095 12.6 0.2 1.3 1 1 0 1 1 1 0 Region in Clathrin and VPS HTH_9 PF08221.11 gi|332797057|ref|YP_004458557.1| - 0.069 13.3 0.1 0.091 12.9 0.1 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain DUF763 PF05559.11 gi|332797057|ref|YP_004458557.1| - 0.076 12.2 0.2 0.077 12.2 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF763) AbiGii_2 PF16873.5 gi|332797058|ref|YP_004458558.1| - 0.034 12.9 0.2 0.038 12.7 0.2 1.1 1 0 0 1 1 1 0 Putative abortive phage resistance protein AbiGii toxin tRNA-synt_1d PF00750.19 gi|332797060|ref|YP_004458560.1| - 5.8e-33 114.3 6.5 1.8e-30 106.1 6.5 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|332797060|ref|YP_004458560.1| - 1.8e-27 95.9 1.5 6.3e-27 94.1 0.0 2.6 3 0 0 3 3 3 1 DALR anticodon binding domain tRNA-synt_1e PF01406.19 gi|332797060|ref|YP_004458560.1| - 0.0078 15.6 2.4 0.28 10.5 0.0 2.9 3 1 0 3 3 3 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1g PF09334.11 gi|332797060|ref|YP_004458560.1| - 0.032 13.0 2.6 0.13 11.0 0.0 3.0 4 0 0 4 4 4 0 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|332797060|ref|YP_004458560.1| - 0.12 11.2 1.8 2.3 7.1 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (K) DUF1059 PF06348.11 gi|332797061|ref|YP_004458561.1| - 7e-50 167.1 0.5 7.6e-25 86.9 0.1 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF1059) OKR_DC_1_N PF03709.15 gi|332797061|ref|YP_004458561.1| - 0.036 14.4 0.0 4.5 7.6 0.0 2.3 1 1 1 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain PemK_toxin PF02452.17 gi|332797061|ref|YP_004458561.1| - 0.039 14.4 0.5 2.3 8.6 0.1 2.1 2 0 0 2 2 2 0 PemK-like, MazF-like toxin of type II toxin-antitoxin system Helicase_C_3 PF13625.6 gi|332797061|ref|YP_004458561.1| - 0.049 13.8 0.0 0.093 12.9 0.0 1.5 1 1 1 2 2 2 0 Helicase conserved C-terminal domain Ribonuc_red_lgC PF02867.15 gi|332797062|ref|YP_004458562.1| - 2.8e-185 616.8 0.0 3.5e-185 616.5 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|332797062|ref|YP_004458562.1| - 4e-30 103.6 0.2 9.5e-30 102.4 0.2 1.7 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain ATP-cone PF03477.16 gi|332797062|ref|YP_004458562.1| - 6e-12 46.0 2.0 2.3e-11 44.1 1.4 2.3 2 0 0 2 2 2 1 ATP cone domain HTH_3 PF01381.22 gi|332797063|ref|YP_004458563.1| - 4.7e-05 23.4 0.0 7.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|332797063|ref|YP_004458563.1| - 0.016 14.9 0.0 0.034 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TnsD PF15978.5 gi|332797063|ref|YP_004458563.1| - 0.033 13.2 0.0 0.036 13.1 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D Myb_DNA-binding PF00249.31 gi|332797063|ref|YP_004458563.1| - 0.042 14.0 0.0 0.075 13.2 0.0 1.3 1 0 0 1 1 1 0 Myb-like DNA-binding domain PDDEXK_6 PF04720.12 gi|332797063|ref|YP_004458563.1| - 0.053 13.5 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 PDDEXK-like family of unknown function HTH_37 PF13744.6 gi|332797063|ref|YP_004458563.1| - 0.06 13.3 0.0 0.11 12.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|332797063|ref|YP_004458563.1| - 0.097 12.5 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain GatB_N PF02934.15 gi|332797065|ref|YP_004458565.1| - 1e-70 238.2 0.0 1.5e-70 237.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|332797065|ref|YP_004458565.1| - 2e-20 73.2 1.6 4.9e-20 71.9 1.6 1.7 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|332797065|ref|YP_004458565.1| - 2.1e-12 47.1 1.1 1e-11 44.9 0.1 2.3 2 0 0 2 2 2 1 GAD domain YqeY PF09424.10 gi|332797065|ref|YP_004458565.1| - 3.8e-06 27.0 1.9 1.5e-05 25.1 1.9 2.1 1 1 0 1 1 1 1 Yqey-like protein tRNA_synt_1c_R1 PF04558.15 gi|332797065|ref|YP_004458565.1| - 0.00013 22.0 1.4 0.00029 20.9 1.4 1.6 1 0 0 1 1 1 1 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Ctf8 PF09696.10 gi|332797065|ref|YP_004458565.1| - 0.073 13.4 0.1 0.26 11.6 0.0 1.9 2 0 0 2 2 2 0 Ctf8 Asparaginase PF00710.20 gi|332797066|ref|YP_004458566.1| - 1.6e-60 203.9 0.1 2.6e-60 203.2 0.1 1.3 1 0 0 1 1 1 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|332797066|ref|YP_004458566.1| - 3.7e-33 114.1 0.1 3.9e-32 110.8 0.1 2.3 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|332797066|ref|YP_004458566.1| - 2.4e-18 65.2 6.0 6.1e-18 63.9 6.0 1.8 1 0 0 1 1 1 1 GatD N-terminal domain DUF460 PF04312.13 gi|332797066|ref|YP_004458566.1| - 0.054 13.2 0.4 0.27 11.0 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF460) Cyclase PF04199.13 gi|332797066|ref|YP_004458566.1| - 0.09 13.0 0.0 0.21 11.8 0.0 1.7 1 0 0 1 1 1 0 Putative cyclase Ribosomal_S30 PF04758.14 gi|332797067|ref|YP_004458567.1| - 1.1e-11 44.8 4.8 1.2e-11 44.6 4.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S30 Nop PF01798.18 gi|332797068|ref|YP_004458568.1| - 1.5e-75 253.6 0.0 2.2e-75 253.1 0.0 1.2 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin Arteri_nsp7a PF16749.5 gi|332797068|ref|YP_004458568.1| - 0.066 13.4 1.2 0.84 9.8 0.0 2.7 3 0 0 3 3 3 0 Arterivirus nonstructural protein 7 alpha Mod_r PF07200.13 gi|332797068|ref|YP_004458568.1| - 0.37 10.9 5.1 0.92 9.6 1.0 2.5 3 0 0 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Fibrillarin PF01269.17 gi|332797069|ref|YP_004458569.1| - 3.4e-103 343.7 0.0 3.8e-103 343.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PCMT PF01135.19 gi|332797069|ref|YP_004458569.1| - 0.00078 19.3 0.1 0.0018 18.0 0.1 1.7 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DUF104 PF01954.16 gi|332797069|ref|YP_004458569.1| - 0.082 13.4 0.3 17 5.9 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function DUF104 DREV PF05219.12 gi|332797069|ref|YP_004458569.1| - 0.15 11.1 0.0 0.36 9.9 0.0 1.6 2 0 0 2 2 2 0 DREV methyltransferase DUF61 PF01886.16 gi|332797070|ref|YP_004458570.1| - 6.8e-26 90.8 0.2 8.5e-26 90.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF61 HTH_3 PF01381.22 gi|332797071|ref|YP_004458571.1| - 2e-12 46.9 0.0 1.8e-11 43.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|332797071|ref|YP_004458571.1| - 7e-06 26.0 0.4 4.7e-05 23.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|332797071|ref|YP_004458571.1| - 5.7e-05 23.5 0.0 0.00012 22.5 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_31 PF13560.6 gi|332797071|ref|YP_004458571.1| - 7.9e-05 22.9 0.0 0.00013 22.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|332797071|ref|YP_004458571.1| - 0.00042 20.0 0.0 0.0027 17.4 0.0 2.3 2 0 0 2 2 2 1 MerR family regulatory protein HTH_17 PF12728.7 gi|332797071|ref|YP_004458571.1| - 0.00045 20.4 0.2 0.0025 17.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|332797071|ref|YP_004458571.1| - 0.00093 19.2 0.1 0.053 13.6 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain of resolvase NapD PF03927.13 gi|332797071|ref|YP_004458571.1| - 0.0021 18.1 0.6 0.0058 16.7 0.2 2.1 2 0 0 2 2 2 1 NapD protein HTH_23 PF13384.6 gi|332797071|ref|YP_004458571.1| - 0.0024 17.6 0.0 0.0081 15.9 0.0 1.9 2 0 0 2 2 1 1 Homeodomain-like domain LacI PF00356.21 gi|332797071|ref|YP_004458571.1| - 0.0032 17.2 0.1 0.3 10.9 0.0 3.0 2 1 1 3 3 3 1 Bacterial regulatory proteins, lacI family Mrr_cat PF04471.12 gi|332797071|ref|YP_004458571.1| - 0.0036 17.3 1.1 0.11 12.5 0.0 2.6 3 0 0 3 3 3 1 Restriction endonuclease HTH_22 PF13309.6 gi|332797071|ref|YP_004458571.1| - 0.0036 17.3 2.9 0.0061 16.6 0.0 2.8 4 0 0 4 4 3 1 HTH domain HTH_8 PF02954.19 gi|332797071|ref|YP_004458571.1| - 0.0053 16.5 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family MerR_1 PF13411.6 gi|332797071|ref|YP_004458571.1| - 0.0068 16.5 0.0 0.03 14.4 0.0 2.2 2 0 0 2 2 1 1 MerR HTH family regulatory protein HTH_11 PF08279.12 gi|332797071|ref|YP_004458571.1| - 0.0088 16.0 0.4 1.4 8.9 0.0 4.0 4 1 0 4 4 4 1 HTH domain HTH_38 PF13936.6 gi|332797071|ref|YP_004458571.1| - 0.014 15.2 0.1 0.044 13.6 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain GP3_package PF16677.5 gi|332797071|ref|YP_004458571.1| - 0.031 14.4 0.2 0.12 12.5 0.0 2.1 2 1 1 3 3 2 0 DNA-packaging protein gp3 Terminase_5 PF06056.12 gi|332797071|ref|YP_004458571.1| - 0.036 14.0 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 1 0 Putative ATPase subunit of terminase (gpP-like) TrkA_N PF02254.18 gi|332797071|ref|YP_004458571.1| - 0.039 14.2 1.0 0.25 11.6 0.3 2.6 2 1 0 2 2 2 0 TrkA-N domain HTH_28 PF13518.6 gi|332797071|ref|YP_004458571.1| - 0.058 13.5 0.0 0.29 11.3 0.0 2.1 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|332797071|ref|YP_004458571.1| - 0.068 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix TetR_N PF00440.23 gi|332797071|ref|YP_004458571.1| - 0.073 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family ACT_5 PF13710.6 gi|332797071|ref|YP_004458571.1| - 0.12 12.3 0.7 0.85 9.5 0.0 2.7 3 1 1 4 4 3 0 ACT domain AHJR-like PF18743.1 gi|332797071|ref|YP_004458571.1| - 0.63 9.6 5.7 1.1 8.8 0.5 3.0 2 1 0 3 3 3 0 REase_AHJR-like TRM PF02005.16 gi|332797072|ref|YP_004458572.1| - 1.3e-94 317.5 0.0 1.4e-94 317.4 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Zn-ribbon_8 PF09723.10 gi|332797072|ref|YP_004458572.1| - 0.0021 18.1 3.0 0.0049 17.0 3.0 1.6 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|332797072|ref|YP_004458572.1| - 0.0054 16.7 0.0 0.01 15.8 0.0 1.5 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Neisseria_PilC PF05567.11 gi|332797072|ref|YP_004458572.1| - 0.028 13.4 0.0 0.041 12.9 0.0 1.1 1 0 0 1 1 1 0 Neisseria PilC beta-propeller domain MTS PF05175.14 gi|332797072|ref|YP_004458572.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain zinc_ribbon_4 PF13717.6 gi|332797072|ref|YP_004458572.1| - 0.33 10.9 3.5 15 5.6 0.0 3.4 3 0 0 3 3 3 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|332797072|ref|YP_004458572.1| - 0.63 10.0 3.0 8 6.4 0.1 2.4 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.6 gi|332797072|ref|YP_004458572.1| - 1.7 8.5 7.5 0.97 9.2 0.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpc34 PF05158.12 gi|332797073|ref|YP_004458573.1| - 3e-08 33.5 5.1 0.00067 19.1 2.9 2.0 1 1 1 2 2 2 2 RNA polymerase Rpc34 subunit HTH_24 PF13412.6 gi|332797073|ref|YP_004458573.1| - 4e-07 29.5 0.6 6.4e-07 28.8 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding B-block_TFIIIC PF04182.12 gi|332797073|ref|YP_004458573.1| - 5.8e-06 26.4 0.5 7.8e-06 26.0 0.5 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.6 gi|332797073|ref|YP_004458573.1| - 0.00064 19.7 0.1 0.00098 19.1 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|332797073|ref|YP_004458573.1| - 0.00083 19.2 0.2 0.0013 18.7 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|332797073|ref|YP_004458573.1| - 0.00096 19.2 0.8 0.0027 17.7 0.3 2.1 1 1 1 2 2 2 1 Helix-turn-helix MarR_2 PF12802.7 gi|332797073|ref|YP_004458573.1| - 0.001 18.9 0.0 0.0014 18.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|332797073|ref|YP_004458573.1| - 0.017 15.0 0.3 0.021 14.7 0.3 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit RPA_C PF08784.11 gi|332797073|ref|YP_004458573.1| - 0.029 15.0 0.2 0.044 14.4 0.2 1.5 1 1 0 1 1 1 0 Replication protein A C terminal Phage_rep_O PF04492.13 gi|332797073|ref|YP_004458573.1| - 0.039 14.5 0.7 0.069 13.7 0.5 1.5 1 1 0 1 1 1 0 Bacteriophage replication protein O HTH_19 PF12844.7 gi|332797073|ref|YP_004458573.1| - 0.064 13.3 0.1 0.064 13.3 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2802 PF10975.8 gi|332797073|ref|YP_004458573.1| - 0.072 13.2 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) AAA_lid_5 PF17865.1 gi|332797073|ref|YP_004458573.1| - 0.087 12.9 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Midasin AAA lid domain HTH_36 PF13730.6 gi|332797073|ref|YP_004458573.1| - 0.094 12.7 0.1 0.2 11.6 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TFIIB PF00382.19 gi|332797074|ref|YP_004458574.1| - 8.2e-22 77.0 0.2 1.2e-11 44.4 0.0 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|332797074|ref|YP_004458574.1| - 1.3e-18 66.2 0.9 2e-18 65.6 0.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|332797074|ref|YP_004458574.1| - 4e-05 23.2 0.4 5.9e-05 22.7 0.4 1.3 1 0 0 1 1 1 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Sigma70_r4 PF04545.16 gi|332797074|ref|YP_004458574.1| - 0.00018 21.0 0.0 0.00067 19.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.19 gi|332797074|ref|YP_004458574.1| - 0.003 17.1 0.3 0.011 15.2 0.3 2.0 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|332797074|ref|YP_004458574.1| - 0.0039 16.8 0.1 0.01 15.5 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|332797074|ref|YP_004458574.1| - 0.0059 16.5 0.7 0.028 14.4 0.2 2.3 2 0 0 2 2 2 1 HTH domain HTH_23 PF13384.6 gi|332797074|ref|YP_004458574.1| - 0.012 15.4 0.0 0.038 13.8 0.0 1.8 1 0 0 1 1 1 0 Homeodomain-like domain BLI1 PF17324.2 gi|332797074|ref|YP_004458574.1| - 0.018 15.7 1.6 0.032 14.9 0.2 2.0 1 1 1 2 2 2 0 BLOC-1 interactor 1 Prim_Zn_Ribbon PF08273.12 gi|332797074|ref|YP_004458574.1| - 0.031 14.6 0.1 0.057 13.7 0.1 1.5 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase A2L_zn_ribbon PF08792.10 gi|332797074|ref|YP_004458574.1| - 0.041 13.6 0.5 0.1 12.4 0.5 1.7 1 0 0 1 1 1 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|332797074|ref|YP_004458574.1| - 0.062 13.2 0.4 0.13 12.3 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_Mga PF08280.11 gi|332797074|ref|YP_004458574.1| - 0.078 13.0 0.3 2 8.5 0.0 2.7 2 0 0 2 2 2 0 M protein trans-acting positive regulator (MGA) HTH domain PhnA_Zn_Ribbon PF08274.12 gi|332797074|ref|YP_004458574.1| - 0.084 12.8 1.3 0.22 11.5 1.3 1.7 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DUF2089 PF09862.9 gi|332797074|ref|YP_004458574.1| - 0.099 12.7 0.1 0.099 12.7 0.1 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF2089) DUF948 PF06103.11 gi|332797074|ref|YP_004458574.1| - 0.1 12.9 0.0 1.3 9.3 0.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Lar_restr_allev PF14354.6 gi|332797074|ref|YP_004458574.1| - 0.12 12.8 0.5 0.23 11.9 0.5 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Ribosomal_S27e PF01667.17 gi|332797074|ref|YP_004458574.1| - 0.13 12.0 0.1 0.23 11.2 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 RPA_interact_C PF14768.6 gi|332797074|ref|YP_004458574.1| - 0.14 12.8 0.0 0.32 11.6 0.0 1.7 1 1 0 1 1 1 0 Replication protein A interacting C-terminal HTH_AsnC-type PF13404.6 gi|332797074|ref|YP_004458574.1| - 0.15 11.9 0.0 0.5 10.2 0.0 1.9 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Zn_Tnp_IS1595 PF12760.7 gi|332797074|ref|YP_004458574.1| - 0.3 11.1 0.8 0.55 10.3 0.8 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Gar1 PF04410.14 gi|332797075|ref|YP_004458575.1| - 1.5e-06 28.1 0.1 1.7e-06 27.9 0.1 1.1 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.16 gi|332797075|ref|YP_004458575.1| - 0.015 15.4 0.4 0.022 14.8 0.3 1.6 1 1 0 1 1 1 0 PRC-barrel domain Spc7 PF08317.11 gi|332797076|ref|YP_004458576.1| - 0.00038 19.4 49.8 0.038 12.9 22.3 2.4 1 1 1 2 2 2 2 Spc7 kinetochore protein Baculo_PEP_C PF04513.12 gi|332797076|ref|YP_004458576.1| - 0.0021 18.1 20.3 0.017 15.1 5.4 3.3 1 1 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus MAP65_ASE1 PF03999.12 gi|332797076|ref|YP_004458576.1| - 0.0027 16.5 43.2 0.015 14.1 30.4 2.2 1 1 1 2 2 2 2 Microtubule associated protein (MAP65/ASE1 family) APG17 PF04108.12 gi|332797076|ref|YP_004458576.1| - 0.0071 15.5 8.0 0.0071 15.5 8.0 2.9 1 1 2 3 3 3 1 Autophagy protein Apg17 WEMBL PF05701.11 gi|332797076|ref|YP_004458576.1| - 0.0074 15.0 7.2 0.0074 15.0 7.2 3.1 1 1 2 3 3 3 1 Weak chloroplast movement under blue light EzrA PF06160.12 gi|332797076|ref|YP_004458576.1| - 0.008 14.4 47.6 0.19 9.9 17.7 2.6 1 1 1 2 2 2 2 Septation ring formation regulator, EzrA CREPT PF16566.5 gi|332797076|ref|YP_004458576.1| - 0.0083 16.3 10.4 0.0083 16.3 10.4 2.4 1 1 1 2 2 2 1 Cell-cycle alteration and expression-elevated protein in tumour BST2 PF16716.5 gi|332797076|ref|YP_004458576.1| - 0.011 16.2 4.2 0.011 16.2 4.2 5.0 3 1 1 5 5 3 0 Bone marrow stromal antigen 2 IFT57 PF10498.9 gi|332797076|ref|YP_004458576.1| - 0.013 14.5 41.2 0.011 14.7 13.4 2.9 1 1 2 3 3 3 0 Intra-flagellar transport protein 57 Flagellin_C PF00700.21 gi|332797076|ref|YP_004458576.1| - 0.018 15.4 0.8 0.018 15.4 0.8 3.9 3 1 0 3 3 2 0 Bacterial flagellin C-terminal helical region MscS_porin PF12795.7 gi|332797076|ref|YP_004458576.1| - 0.023 14.2 37.7 0.4 10.2 24.4 2.6 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain DUF1664 PF07889.12 gi|332797076|ref|YP_004458576.1| - 0.023 14.7 32.5 0.34 10.9 6.0 4.3 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|332797076|ref|YP_004458576.1| - 0.025 14.8 18.7 0.62 10.4 1.1 4.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) HrpB7 PF09486.10 gi|332797076|ref|YP_004458576.1| - 0.056 13.8 16.8 0.31 11.4 1.0 2.5 1 1 0 2 2 2 0 Bacterial type III secretion protein (HrpB7) Sec34 PF04136.15 gi|332797076|ref|YP_004458576.1| - 0.069 13.0 23.0 0.24 11.2 5.4 3.6 1 1 3 4 4 4 0 Sec34-like family APG6_N PF17675.1 gi|332797076|ref|YP_004458576.1| - 0.12 12.9 50.0 0.046 14.3 7.2 4.3 1 1 3 4 4 4 0 Apg6 coiled-coil region Fez1 PF06818.15 gi|332797076|ref|YP_004458576.1| - 0.13 12.7 42.3 0.39 11.2 14.4 2.6 1 1 1 2 2 2 0 Fez1 TPR_MLP1_2 PF07926.12 gi|332797076|ref|YP_004458576.1| - 0.23 11.5 42.8 1.5 8.9 14.6 4.3 1 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF3450 PF11932.8 gi|332797076|ref|YP_004458576.1| - 0.29 10.4 34.3 1 8.6 18.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|332797076|ref|YP_004458576.1| - 0.3 11.1 54.4 0.08 13.0 18.5 4.2 1 1 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 LPP PF04728.13 gi|332797076|ref|YP_004458576.1| - 0.4 11.1 14.9 1.9 9.0 0.3 4.5 3 1 1 4 4 4 0 Lipoprotein leucine-zipper MAD PF05557.13 gi|332797076|ref|YP_004458576.1| - 0.43 8.9 49.9 0.083 11.2 24.6 2.0 1 1 1 2 2 2 0 Mitotic checkpoint protein HAP1_N PF04849.13 gi|332797076|ref|YP_004458576.1| - 0.47 9.6 39.6 0.15 11.3 11.3 2.7 1 1 1 3 3 3 0 HAP1 N-terminal conserved region MtrB PF05440.12 gi|332797076|ref|YP_004458576.1| - 0.5 10.8 5.7 3.6 8.1 0.3 4.0 2 2 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase subunit B MCPsignal PF00015.21 gi|332797076|ref|YP_004458576.1| - 0.62 9.8 18.8 0.43 10.4 6.2 3.2 1 1 1 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin_2 PF14523.6 gi|332797076|ref|YP_004458576.1| - 0.68 10.3 41.5 0.19 12.1 13.5 3.9 1 1 3 4 4 4 0 Syntaxin-like protein GAS PF13851.6 gi|332797076|ref|YP_004458576.1| - 0.68 9.2 54.2 5.5 6.3 30.3 3.0 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding Exonuc_VII_L PF02601.15 gi|332797076|ref|YP_004458576.1| - 0.87 9.1 32.0 5 6.6 12.1 2.1 1 1 1 2 2 2 0 Exonuclease VII, large subunit NPV_P10 PF05531.12 gi|332797076|ref|YP_004458576.1| - 0.94 10.0 22.6 0.44 11.0 3.6 4.1 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.12 gi|332797076|ref|YP_004458576.1| - 0.98 9.4 36.4 0.16 12.0 9.4 3.2 1 1 2 3 3 3 0 Laminin Domain II DUF3584 PF12128.8 gi|332797076|ref|YP_004458576.1| - 1.1 6.6 39.0 0.92 6.9 18.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF2968 PF11180.8 gi|332797076|ref|YP_004458576.1| - 1.2 8.7 27.1 0.078 12.6 4.6 3.4 1 1 1 3 3 3 0 Protein of unknown function (DUF2968) AAA_13 PF13166.6 gi|332797076|ref|YP_004458576.1| - 1.7 7.2 42.7 1.4 7.5 20.8 2.4 1 1 1 2 2 2 0 AAA domain BLOC1_2 PF10046.9 gi|332797076|ref|YP_004458576.1| - 2.3 8.6 38.9 1.1 9.6 9.6 5.0 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Imm7 PF15585.6 gi|332797076|ref|YP_004458576.1| - 3.6 7.9 11.3 1.2 9.4 1.0 3.6 2 1 2 4 4 4 0 Immunity protein 7 DUF724 PF05266.14 gi|332797076|ref|YP_004458576.1| - 3.7 7.3 50.4 0.095 12.5 11.5 3.6 1 1 3 4 4 4 0 Protein of unknown function (DUF724) Prominin PF05478.11 gi|332797076|ref|YP_004458576.1| - 3.8 5.3 28.5 1.3 6.9 7.3 2.0 1 1 1 2 2 2 0 Prominin ApoO PF09769.9 gi|332797076|ref|YP_004458576.1| - 4.7 7.2 7.3 14 5.6 0.5 3.5 2 2 2 4 4 4 0 Apolipoprotein O ATG16 PF08614.11 gi|332797076|ref|YP_004458576.1| - 4.8 7.4 38.0 1.1 9.4 16.6 2.8 1 1 2 3 3 3 0 Autophagy protein 16 (ATG16) DUF4140 PF13600.6 gi|332797076|ref|YP_004458576.1| - 5.4 7.5 31.3 0.8 10.2 3.7 4.8 1 1 4 5 5 4 0 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.22 gi|332797076|ref|YP_004458576.1| - 6 7.1 57.9 0.27 11.5 9.2 5.1 1 1 3 4 4 4 0 Seryl-tRNA synthetase N-terminal domain GrpE PF01025.19 gi|332797076|ref|YP_004458576.1| - 6.5 6.4 44.5 0.031 14.0 9.5 3.8 1 1 2 3 3 3 0 GrpE Tektin PF03148.14 gi|332797076|ref|YP_004458576.1| - 6.7 5.4 42.7 3.4 6.3 4.3 3.9 1 1 3 4 4 4 0 Tektin family Bacillus_HBL PF05791.11 gi|332797076|ref|YP_004458576.1| - 6.9 6.5 32.6 0.7 9.7 7.2 3.4 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) DUF2431 PF10354.9 gi|332797076|ref|YP_004458576.1| - 7.1 6.9 9.0 19 5.4 1.3 3.0 2 2 0 2 2 2 0 Domain of unknown function (DUF2431) DUF812 PF05667.11 gi|332797076|ref|YP_004458576.1| - 7.1 5.4 46.7 0.99 8.2 21.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Golgin_A5 PF09787.9 gi|332797076|ref|YP_004458576.1| - 7.1 6.0 43.9 0.75 9.2 12.2 2.6 1 1 1 2 2 2 0 Golgin subfamily A member 5 TraF_2 PF13729.6 gi|332797076|ref|YP_004458576.1| - 7.3 5.9 11.0 0.23 10.8 0.6 2.8 2 1 0 3 3 3 0 F plasmid transfer operon, TraF, protein TMPIT PF07851.13 gi|332797076|ref|YP_004458576.1| - 9.5 5.4 38.1 1.4 8.1 12.4 3.0 1 1 3 4 4 4 0 TMPIT-like protein DUF373 PF04123.13 gi|332797077|ref|YP_004458577.1| - 2.1e-87 293.7 19.5 2.4e-87 293.5 19.5 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) FtsK_4TM PF13491.6 gi|332797077|ref|YP_004458577.1| - 0.0094 15.7 5.4 0.017 14.9 5.4 1.4 1 0 0 1 1 1 1 4TM region of DNA translocase FtsK/SpoIIIE SRP54 PF00448.22 gi|332797077|ref|YP_004458577.1| - 0.039 13.6 1.1 0.16 11.6 0.3 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain UCR_UQCRX_QCR9 PF05365.12 gi|332797077|ref|YP_004458577.1| - 0.066 13.2 0.5 8.8 6.4 0.0 3.2 2 1 1 3 3 3 0 Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like DUF5622 PF18533.1 gi|332797078|ref|YP_004458578.1| - 1.2e-23 83.0 6.7 1.3e-23 82.9 6.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5622) TBP PF00352.21 gi|332797079|ref|YP_004458579.1| - 5.4e-55 183.3 0.4 1.4e-30 105.1 0.1 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.8 gi|332797079|ref|YP_004458579.1| - 4.7e-08 33.0 0.0 0.0041 17.2 0.0 2.5 2 1 1 3 3 3 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|332797079|ref|YP_004458579.1| - 0.0092 16.7 0.4 0.028 15.2 0.5 1.8 1 1 1 2 2 2 1 Sigma 54 modulation protein / S30EA ribosomal protein RTT107_BRCT_5 PF16770.5 gi|332797079|ref|YP_004458579.1| - 0.016 15.0 0.5 0.13 12.2 0.2 2.0 2 0 0 2 2 2 0 Regulator of Ty1 transposition protein 107 BRCT domain NMT1_3 PF16868.5 gi|332797079|ref|YP_004458579.1| - 0.045 13.2 0.0 0.05 13.0 0.0 1.1 1 0 0 1 1 1 0 NMT1-like family Goodbye PF17109.5 gi|332797079|ref|YP_004458579.1| - 0.07 13.6 0.1 3.8 8.0 0.0 2.2 2 0 0 2 2 2 0 fungal STAND N-terminal Goodbye domain HTH_11 PF08279.12 gi|332797079|ref|YP_004458579.1| - 0.16 11.9 0.7 0.38 10.7 0.7 1.6 1 0 0 1 1 1 0 HTH domain Metallophos PF00149.28 gi|332797080|ref|YP_004458580.1| - 1.7e-06 28.7 2.7 4.2e-06 27.4 0.6 1.9 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|332797080|ref|YP_004458580.1| - 0.00014 22.1 0.2 0.00023 21.4 0.2 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain TP_methylase PF00590.20 gi|332797081|ref|YP_004458581.1| - 7.9e-25 88.0 0.0 9.4e-25 87.8 0.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CTP_transf_like PF01467.26 gi|332797082|ref|YP_004458582.1| - 1.8e-17 63.8 0.1 2.8e-17 63.3 0.1 1.2 1 0 0 1 1 1 1 Cytidylyltransferase-like DUF357 PF04010.13 gi|332797082|ref|YP_004458582.1| - 3.4e-14 52.7 0.2 9.1e-14 51.3 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF357) DUF498 PF04430.14 gi|332797082|ref|YP_004458582.1| - 0.08 13.0 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF498/DUF598) Urm1 PF09138.11 gi|332797082|ref|YP_004458582.1| - 0.095 13.1 0.1 0.22 11.9 0.1 1.6 1 0 0 1 1 1 0 Urm1 (Ubiquitin related modifier) CTP-dep_RFKase PF01982.16 gi|332797083|ref|YP_004458583.1| - 3.6e-40 136.8 0.0 6.9e-40 135.9 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_24 PF13412.6 gi|332797083|ref|YP_004458583.1| - 3.1e-09 36.2 1.3 5.9e-09 35.3 1.3 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332797083|ref|YP_004458583.1| - 1.3e-07 31.4 0.4 2.3e-07 30.6 0.4 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|332797083|ref|YP_004458583.1| - 1.5e-06 28.0 1.6 2.7e-06 27.2 1.6 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|332797083|ref|YP_004458583.1| - 1.7e-06 27.8 0.1 1.5e-05 24.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|332797083|ref|YP_004458583.1| - 5.6e-06 26.3 0.5 1.9e-05 24.5 0.5 1.9 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain DUF4364 PF14277.6 gi|332797083|ref|YP_004458583.1| - 7e-05 22.6 0.5 0.00012 21.9 0.5 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_DeoR PF08220.12 gi|332797083|ref|YP_004458583.1| - 8.7e-05 22.2 0.6 0.00016 21.3 0.6 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_12 PF08461.10 gi|332797083|ref|YP_004458583.1| - 0.00029 20.7 1.0 0.0005 20.0 1.0 1.4 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|332797083|ref|YP_004458583.1| - 0.00029 20.7 0.9 0.00045 20.1 0.9 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|332797083|ref|YP_004458583.1| - 0.00034 20.4 0.2 0.00061 19.6 0.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family RepL PF05732.11 gi|332797083|ref|YP_004458583.1| - 0.00059 19.3 0.2 0.00089 18.7 0.2 1.3 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_1 PF00126.27 gi|332797083|ref|YP_004458583.1| - 0.00072 19.5 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family B-block_TFIIIC PF04182.12 gi|332797083|ref|YP_004458583.1| - 0.0014 18.8 0.2 0.0024 18.0 0.2 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|332797083|ref|YP_004458583.1| - 0.0016 18.3 0.1 0.0031 17.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|332797083|ref|YP_004458583.1| - 0.0019 18.2 0.0 0.0032 17.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_36 PF13730.6 gi|332797083|ref|YP_004458583.1| - 0.0037 17.2 0.2 0.008 16.1 0.2 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain HxlR PF01638.17 gi|332797083|ref|YP_004458583.1| - 0.0041 17.0 0.3 0.0095 15.8 0.3 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix Arg_repressor PF01316.21 gi|332797083|ref|YP_004458583.1| - 0.0044 16.8 0.6 0.0082 15.9 0.6 1.5 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain FUR PF01475.19 gi|332797083|ref|YP_004458583.1| - 0.0046 17.1 0.1 0.0071 16.5 0.1 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_AsnC-type PF13404.6 gi|332797083|ref|YP_004458583.1| - 0.0048 16.7 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_Tnp_4 PF13613.6 gi|332797083|ref|YP_004458583.1| - 0.009 15.7 0.0 0.03 14.0 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix of DDE superfamily endonuclease Fe_dep_repress PF01325.19 gi|332797083|ref|YP_004458583.1| - 0.0093 16.2 0.1 0.017 15.3 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_7 PF02796.15 gi|332797083|ref|YP_004458583.1| - 0.014 15.5 0.3 0.028 14.5 0.1 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase DDRGK PF09756.9 gi|332797083|ref|YP_004458583.1| - 0.018 14.7 2.9 0.027 14.1 2.9 1.3 1 1 0 1 1 1 0 DDRGK domain DUF977 PF06163.11 gi|332797083|ref|YP_004458583.1| - 0.024 14.6 0.1 0.041 13.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) HAP1_N PF04849.13 gi|332797083|ref|YP_004458583.1| - 0.029 13.6 1.4 0.04 13.1 1.4 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Rrf2 PF02082.20 gi|332797083|ref|YP_004458583.1| - 0.045 14.1 0.1 0.076 13.4 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator GntR PF00392.21 gi|332797083|ref|YP_004458583.1| - 0.048 13.3 0.1 0.087 12.5 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|332797083|ref|YP_004458583.1| - 0.059 13.6 0.2 0.14 12.3 0.3 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|332797083|ref|YP_004458583.1| - 0.075 13.1 0.0 0.092 12.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Sigma70_r4 PF04545.16 gi|332797083|ref|YP_004458583.1| - 0.093 12.3 0.2 0.23 11.0 0.2 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_rep_O PF04492.13 gi|332797083|ref|YP_004458583.1| - 0.1 13.2 0.4 0.18 12.4 0.4 1.4 1 0 0 1 1 1 0 Bacteriophage replication protein O Intein_splicing PF14890.6 gi|332797083|ref|YP_004458583.1| - 0.1 12.5 0.6 0.15 12.0 0.6 1.3 1 0 0 1 1 1 0 Intein splicing domain HTH_27 PF13463.6 gi|332797083|ref|YP_004458583.1| - 0.12 12.9 0.1 0.21 12.1 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain UN_NPL4 PF11543.8 gi|332797083|ref|YP_004458583.1| - 0.12 12.9 1.7 7.8 7.1 0.1 2.5 1 1 1 2 2 2 0 Nuclear pore localisation protein NPL4 DUF2250 PF10007.9 gi|332797083|ref|YP_004458583.1| - 0.14 12.3 0.2 0.23 11.6 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Wyosine_form PF08608.12 gi|332797084|ref|YP_004458584.1| - 1.4e-21 76.6 0.1 2.6e-21 75.7 0.1 1.5 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|332797084|ref|YP_004458584.1| - 2.1e-20 73.8 0.0 8.2e-20 71.8 0.0 1.9 1 1 0 1 1 1 1 Radical SAM superfamily Amidase PF01425.21 gi|332797085|ref|YP_004458585.1| - 1e-143 479.6 0.0 1.1e-143 479.4 0.0 1.0 1 0 0 1 1 1 1 Amidase Glu-tRNAGln PF02686.15 gi|332797086|ref|YP_004458586.1| - 9.7e-17 61.0 0.5 1.4e-16 60.5 0.1 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit RHH_1 PF01402.21 gi|332797086|ref|YP_004458586.1| - 0.12 12.4 0.3 0.23 11.4 0.3 1.5 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family CutA1 PF03091.15 gi|332797087|ref|YP_004458587.1| - 8.8e-37 124.9 0.0 9.9e-37 124.8 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein ResIII PF04851.15 gi|332797089|ref|YP_004458589.1| - 1.1e-23 84.1 2.2 2.2e-23 83.1 0.1 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|332797089|ref|YP_004458589.1| - 1.2e-23 83.6 1.6 4.6e-23 81.7 1.6 1.9 1 1 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|332797089|ref|YP_004458589.1| - 1.3e-19 70.5 2.1 3.1e-19 69.3 0.2 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|332797089|ref|YP_004458589.1| - 1.1e-07 31.8 0.5 4.9e-07 29.7 0.0 2.4 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|332797089|ref|YP_004458589.1| - 0.0026 18.0 0.0 0.018 15.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.9 gi|332797089|ref|YP_004458589.1| - 0.013 14.8 0.3 0.027 13.7 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.6 gi|332797089|ref|YP_004458589.1| - 0.36 10.6 1.9 1.2 8.8 0.1 2.5 2 1 0 3 3 3 0 AAA domain DUF4116 PF13475.6 gi|332797090|ref|YP_004458590.1| - 1.5 8.6 4.5 6.9 6.5 3.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4116) RTP1_C1 PF10363.9 gi|332797091|ref|YP_004458591.1| - 0.12 12.5 0.3 0.17 12.1 0.3 1.3 1 1 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 1 Alba PF01918.21 gi|332797093|ref|YP_004458593.1| - 8.5e-23 80.0 0.3 1.1e-22 79.5 0.3 1.2 1 0 0 1 1 1 1 Alba DUF3954 PF13128.6 gi|332797093|ref|YP_004458593.1| - 0.0083 15.9 0.6 0.036 13.9 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3954) Topoisom_bac PF01131.20 gi|332797094|ref|YP_004458594.1| - 8.8e-76 255.5 5.3 3.5e-74 250.3 5.3 2.3 1 1 0 1 1 1 1 DNA topoisomerase Toprim PF01751.22 gi|332797094|ref|YP_004458594.1| - 2.4e-22 79.1 0.2 1.5e-21 76.6 0.0 2.6 2 0 0 2 2 1 1 Toprim domain zf_Rg PF17915.1 gi|332797094|ref|YP_004458594.1| - 1.4e-17 62.8 0.7 1.4e-17 62.8 0.7 2.1 2 0 0 2 2 2 1 Reverse gyrase zinc finger DEAD PF00270.29 gi|332797094|ref|YP_004458594.1| - 1.9e-11 44.0 0.9 8.8e-11 41.9 0.3 2.4 3 1 0 3 3 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|332797094|ref|YP_004458594.1| - 2.1e-07 31.1 0.2 7.9e-07 29.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DZR PF12773.7 gi|332797094|ref|YP_004458594.1| - 0.0013 18.7 4.5 0.033 14.2 0.3 2.3 2 0 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|332797094|ref|YP_004458594.1| - 0.0029 17.0 4.4 0.37 10.2 0.4 2.8 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|332797094|ref|YP_004458594.1| - 0.0043 17.1 3.6 0.21 11.7 1.2 2.6 2 0 0 2 2 2 1 Zinc ribbon domain Toprim_4 PF13662.6 gi|332797094|ref|YP_004458594.1| - 0.0051 17.2 0.0 0.018 15.5 0.0 2.0 1 0 0 1 1 1 1 Toprim domain SRP54 PF00448.22 gi|332797094|ref|YP_004458594.1| - 0.018 14.7 0.1 0.068 12.8 0.0 2.0 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|332797094|ref|YP_004458594.1| - 0.028 14.8 0.0 0.059 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_45 PF14947.6 gi|332797094|ref|YP_004458594.1| - 0.046 13.7 1.5 0.76 9.8 0.2 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix Helicase_C PF00271.31 gi|332797094|ref|YP_004458594.1| - 0.063 13.6 0.0 0.55 10.6 0.0 2.7 2 0 0 2 2 2 0 Helicase conserved C-terminal domain AAA_11 PF13086.6 gi|332797094|ref|YP_004458594.1| - 0.13 12.0 0.1 0.3 10.8 0.1 1.6 1 1 0 1 1 1 0 AAA domain DUF1272 PF06906.11 gi|332797094|ref|YP_004458594.1| - 0.35 11.0 2.8 4.6 7.4 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zinc_ribbon_15 PF17032.5 gi|332797094|ref|YP_004458594.1| - 0.38 11.5 2.9 0.26 12.1 0.5 2.0 2 0 0 2 2 1 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|332797094|ref|YP_004458594.1| - 0.92 9.5 4.2 4.5 7.3 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbons zf-C2HC5 PF06221.13 gi|332797094|ref|YP_004458594.1| - 3.7 7.6 5.4 0.68 10.0 0.4 2.1 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type ADK_lid PF05191.14 gi|332797094|ref|YP_004458594.1| - 3.9 7.5 5.9 1.9 8.5 1.1 2.6 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-TFIIB PF13453.6 gi|332797094|ref|YP_004458594.1| - 9.1 5.7 7.5 5.4 6.4 1.0 2.9 3 0 0 3 3 3 0 Transcription factor zinc-finger Alba PF01918.21 gi|332797095|ref|YP_004458595.1| - 8.6e-13 47.9 0.3 1.4e-12 47.2 0.2 1.3 1 1 0 1 1 1 1 Alba LTD PF00932.19 gi|332797095|ref|YP_004458595.1| - 0.0025 18.2 0.1 0.0034 17.7 0.1 1.4 1 1 0 1 1 1 1 Lamin Tail Domain DEAD PF00270.29 gi|332797096|ref|YP_004458596.1| - 1.7e-29 102.8 0.0 8e-29 100.6 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332797096|ref|YP_004458596.1| - 2.1e-14 53.8 0.1 4.8e-13 49.4 0.0 3.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332797096|ref|YP_004458596.1| - 1.3e-08 35.0 0.0 4.4e-08 33.3 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD_assoc PF08494.11 gi|332797096|ref|YP_004458596.1| - 2.2e-05 24.4 0.0 0.11 12.3 0.0 2.4 1 1 1 2 2 2 2 DEAD/H associated SNF2_N PF00176.23 gi|332797096|ref|YP_004458596.1| - 0.034 12.9 0.1 0.059 12.1 0.1 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|332797096|ref|YP_004458596.1| - 0.038 14.3 0.0 0.11 12.9 0.0 1.8 1 0 0 1 1 1 0 AAA domain HTH_5 PF01022.20 gi|332797096|ref|YP_004458596.1| - 0.086 12.7 0.0 0.63 9.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family PhoH PF02562.16 gi|332797096|ref|YP_004458596.1| - 0.11 12.0 0.2 0.73 9.3 0.0 2.4 3 0 0 3 3 3 0 PhoH-like protein RtcB PF01139.17 gi|332797098|ref|YP_004458598.1| - 1.1e-162 541.9 0.0 1.3e-162 541.7 0.0 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB 6PGD PF00393.19 gi|332797098|ref|YP_004458598.1| - 0.2 11.0 1.4 0.36 10.2 0.1 2.0 2 0 0 2 2 2 0 6-phosphogluconate dehydrogenase, C-terminal domain DS PF01916.17 gi|332797099|ref|YP_004458599.1| - 6e-101 337.5 0.0 6.9e-101 337.3 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase Topo-VIb_trans PF09239.11 gi|332797100|ref|YP_004458600.1| - 1.3e-67 226.6 0.4 2.9e-67 225.5 0.4 1.6 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c_3 PF13589.6 gi|332797100|ref|YP_004458600.1| - 6.5e-10 39.0 0.0 1.5e-09 37.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|332797100|ref|YP_004458600.1| - 9e-10 39.1 0.0 1.5e-09 38.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FbpA PF05833.11 gi|332797100|ref|YP_004458600.1| - 7.5e-06 25.0 0.1 7.5e-06 25.0 0.1 2.0 2 0 0 2 2 2 1 Fibronectin-binding protein A N-terminus (FbpA) Ribosomal_S13 PF00416.22 gi|332797100|ref|YP_004458600.1| - 0.0013 19.1 1.3 0.0046 17.3 0.0 2.4 2 1 0 2 2 2 1 Ribosomal protein S13/S18 Hom_end PF05204.14 gi|332797100|ref|YP_004458600.1| - 0.024 14.8 0.1 0.048 13.8 0.1 1.5 1 0 0 1 1 1 0 Homing endonuclease TP6A_N PF04406.14 gi|332797101|ref|YP_004458601.1| - 3.6e-21 74.9 0.1 6.2e-21 74.1 0.1 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase DUF2399 PF09664.10 gi|332797101|ref|YP_004458601.1| - 0.068 13.1 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2399) GTP_EFTU_D4 PF14578.6 gi|332797101|ref|YP_004458601.1| - 0.072 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu domain 4 Elf1 PF05129.13 gi|332797102|ref|YP_004458602.1| - 0.0019 18.2 0.5 0.0021 18.0 0.5 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like Zn_ribbon_SprT PF17283.2 gi|332797102|ref|YP_004458602.1| - 0.0082 16.0 0.4 0.011 15.6 0.4 1.2 1 0 0 1 1 1 1 SprT-like zinc ribbon domain DUF3797 PF12677.7 gi|332797102|ref|YP_004458602.1| - 0.023 14.6 4.7 1.5 8.7 1.5 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-ribbon_3 PF13248.6 gi|332797102|ref|YP_004458602.1| - 0.08 12.4 2.5 5.3 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PAP_PilO PF06864.12 gi|332797102|ref|YP_004458602.1| - 0.24 10.2 0.0 0.24 10.2 0.0 1.0 1 0 0 1 1 1 0 Pilin accessory protein (PilO) C1_2 PF03107.16 gi|332797102|ref|YP_004458602.1| - 0.34 11.3 3.5 0.38 11.1 0.2 2.0 1 1 1 2 2 2 0 C1 domain eIF-5a PF01287.20 gi|332797103|ref|YP_004458603.1| - 1.3e-07 31.6 0.4 2.4e-07 30.7 0.4 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.12 gi|332797103|ref|YP_004458603.1| - 2.2e-07 30.8 0.1 7.7e-07 29.1 0.2 1.9 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|332797103|ref|YP_004458603.1| - 0.0079 16.2 0.2 0.017 15.1 0.2 1.6 1 0 0 1 1 1 1 Elongation factor P (EF-P) OB domain SRP54 PF00448.22 gi|332797104|ref|YP_004458604.1| - 3.8e-72 242.1 0.8 5.9e-72 241.4 0.8 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|332797104|ref|YP_004458604.1| - 1.3e-29 102.7 1.0 8.8e-28 96.9 0.1 3.0 2 0 0 2 2 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|332797104|ref|YP_004458604.1| - 4.7e-16 58.8 1.6 1.1e-15 57.6 0.2 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|332797104|ref|YP_004458604.1| - 2.4e-06 27.6 0.0 9.5e-06 25.7 0.0 2.1 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_30 PF13604.6 gi|332797104|ref|YP_004458604.1| - 0.00014 21.6 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|332797104|ref|YP_004458604.1| - 0.00029 20.3 0.1 0.00051 19.6 0.1 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_22 PF13401.6 gi|332797104|ref|YP_004458604.1| - 0.00034 20.9 0.0 0.0014 18.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain Phage_TAC_5 PF08890.11 gi|332797104|ref|YP_004458604.1| - 0.0031 17.5 0.4 0.011 15.8 0.1 2.1 3 0 0 3 3 2 1 Phage XkdN-like tail assembly chaperone protein, TAC AAA_33 PF13671.6 gi|332797104|ref|YP_004458604.1| - 0.0039 17.4 0.0 0.01 16.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_31 PF13614.6 gi|332797104|ref|YP_004458604.1| - 0.0044 16.9 0.0 0.013 15.4 0.0 1.9 1 0 0 1 1 1 1 AAA domain MobB PF03205.14 gi|332797104|ref|YP_004458604.1| - 0.0096 15.8 0.2 0.025 14.5 0.2 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B eIF3_subunit PF08597.10 gi|332797104|ref|YP_004458604.1| - 0.011 15.6 0.1 0.024 14.6 0.1 1.5 1 0 0 1 1 1 0 Translation initiation factor eIF3 subunit cobW PF02492.19 gi|332797104|ref|YP_004458604.1| - 0.027 14.1 2.9 0.53 9.8 2.9 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|332797104|ref|YP_004458604.1| - 0.027 15.0 0.1 0.069 13.7 0.1 1.9 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|332797104|ref|YP_004458604.1| - 0.03 14.1 0.1 0.099 12.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain MeaB PF03308.16 gi|332797104|ref|YP_004458604.1| - 0.035 13.1 0.7 0.24 10.3 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MMR_HSR1 PF01926.23 gi|332797104|ref|YP_004458604.1| - 0.038 14.1 2.3 0.15 12.2 0.0 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|332797104|ref|YP_004458604.1| - 0.039 13.2 0.0 0.081 12.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|332797104|ref|YP_004458604.1| - 0.043 14.2 2.1 0.19 12.2 0.9 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|332797104|ref|YP_004458604.1| - 0.046 13.7 0.2 0.12 12.3 0.2 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|332797104|ref|YP_004458604.1| - 0.055 13.8 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain DNA_ligase_A_N PF04675.14 gi|332797104|ref|YP_004458604.1| - 0.056 13.8 0.5 1.1 9.5 0.1 2.7 2 1 1 3 3 2 0 DNA ligase N terminus AAA_28 PF13521.6 gi|332797104|ref|YP_004458604.1| - 0.056 13.7 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain 6PF2K PF01591.18 gi|332797104|ref|YP_004458604.1| - 0.059 12.7 0.0 0.18 11.1 0.0 1.8 2 0 0 2 2 2 0 6-phosphofructo-2-kinase PFOR_II PF17147.4 gi|332797104|ref|YP_004458604.1| - 0.087 13.1 0.2 3.3 8.1 0.1 3.0 1 1 1 2 2 2 0 Pyruvate:ferredoxin oxidoreductase core domain II ResIII PF04851.15 gi|332797104|ref|YP_004458604.1| - 0.38 10.7 5.2 3 7.8 1.3 3.1 1 1 2 3 3 3 0 Type III restriction enzyme, res subunit THUMP PF02926.17 gi|332797105|ref|YP_004458605.1| - 9.7e-05 22.5 2.5 9.7e-05 22.5 2.5 2.5 3 0 0 3 3 3 1 THUMP domain RnlB_antitoxin PF15933.5 gi|332797105|ref|YP_004458605.1| - 0.47 10.8 4.9 0.58 10.5 0.9 2.8 3 0 0 3 3 3 0 Antitoxin to bacterial toxin RNase LS or RnlA MtrG PF04210.13 gi|332797105|ref|YP_004458605.1| - 0.73 9.7 3.3 11 6.0 0.1 3.1 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G NAD_binding_2 PF03446.15 gi|332797106|ref|YP_004458606.1| - 5.9e-35 120.8 0.2 9.3e-35 120.1 0.2 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|332797106|ref|YP_004458606.1| - 1.2e-25 90.1 0.0 2.1e-25 89.3 0.0 1.4 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|332797106|ref|YP_004458606.1| - 1.4e-09 38.4 0.1 4.9e-09 36.6 0.1 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent PDH PF02153.17 gi|332797106|ref|YP_004458606.1| - 0.00012 21.2 0.1 0.00019 20.5 0.1 1.2 1 0 0 1 1 1 1 Prephenate dehydrogenase Shikimate_DH PF01488.20 gi|332797106|ref|YP_004458606.1| - 0.00027 21.0 0.1 0.00051 20.1 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|332797106|ref|YP_004458606.1| - 0.00071 20.4 0.0 0.0018 19.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|332797106|ref|YP_004458606.1| - 0.0021 17.4 0.0 0.0037 16.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|332797106|ref|YP_004458606.1| - 0.0028 17.2 0.1 0.0059 16.2 0.1 1.6 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain OCD_Mu_crystall PF02423.15 gi|332797106|ref|YP_004458606.1| - 0.027 13.4 0.0 0.038 12.9 0.0 1.2 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family 5_3_exonuc_N PF02739.16 gi|332797106|ref|YP_004458606.1| - 0.029 14.3 0.0 0.057 13.3 0.0 1.4 1 0 0 1 1 1 0 5'-3' exonuclease, N-terminal resolvase-like domain Glycos_transf_1 PF00534.20 gi|332797107|ref|YP_004458607.1| - 4.7e-23 81.6 0.3 7.2e-23 81.0 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332797107|ref|YP_004458607.1| - 3.2e-13 50.3 0.0 5.4e-13 49.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 ALG11_N PF15924.5 gi|332797107|ref|YP_004458607.1| - 0.042 13.9 0.6 0.28 11.2 0.3 2.2 2 0 0 2 2 2 0 ALG11 mannosyltransferase N-terminus adh_short PF00106.25 gi|332797108|ref|YP_004458608.1| - 1e-36 126.3 0.0 1.3e-36 125.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|332797108|ref|YP_004458608.1| - 2e-36 125.8 0.0 2.7e-36 125.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|332797108|ref|YP_004458608.1| - 0.00013 21.9 0.0 0.00018 21.4 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|332797108|ref|YP_004458608.1| - 0.076 12.9 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|332797108|ref|YP_004458608.1| - 0.13 12.5 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Cren7 PF11520.8 gi|332797109|ref|YP_004458609.1| - 7.4e-31 105.9 1.1 7.9e-31 105.8 1.1 1.0 1 0 0 1 1 1 1 Chromatin protein Cren7 AA_kinase PF00696.28 gi|332797110|ref|YP_004458610.1| - 1.5e-31 109.9 0.6 1.1e-30 107.1 0.6 1.9 1 1 0 1 1 1 1 Amino acid kinase family Ca_bind_SSO6904 PF18249.1 gi|332797111|ref|YP_004458611.1| - 1.6e-43 147.0 4.8 1.7e-43 146.8 4.8 1.0 1 0 0 1 1 1 1 Calcium binding protein SSO6904 Tricorn_C1 PF14684.6 gi|332797111|ref|YP_004458611.1| - 0.071 13.2 0.1 0.46 10.6 0.0 2.0 2 0 0 2 2 2 0 Tricorn protease C1 domain HMGL-like PF00682.19 gi|332797112|ref|YP_004458612.1| - 1.2e-71 241.3 1.1 1.6e-71 241.0 1.1 1.1 1 0 0 1 1 1 1 HMGL-like AsnC_trans_reg PF01037.21 gi|332797112|ref|YP_004458612.1| - 5.2e-15 55.2 0.2 4.7e-13 48.9 0.1 3.0 3 0 0 3 3 3 1 Lrp/AsnC ligand binding domain AP_endonuc_2 PF01261.24 gi|332797112|ref|YP_004458612.1| - 6.1e-05 22.5 0.7 0.00038 20.0 0.7 2.1 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel NapD PF03927.13 gi|332797112|ref|YP_004458612.1| - 0.013 15.5 0.1 1 9.5 0.1 3.4 3 0 0 3 3 3 0 NapD protein FtsX_ECD PF18075.1 gi|332797112|ref|YP_004458612.1| - 0.036 14.7 0.9 6.7 7.4 0.1 4.1 4 1 0 4 4 4 0 FtsX extracellular domain ACT_4 PF13291.6 gi|332797112|ref|YP_004458612.1| - 0.043 14.4 1.8 8.9 7.0 0.1 4.2 4 1 1 5 5 5 0 ACT domain Radical_SAM PF04055.21 gi|332797112|ref|YP_004458612.1| - 0.061 13.7 1.8 0.5 10.7 0.8 2.8 2 2 0 2 2 2 0 Radical SAM superfamily CinA_KH PF18146.1 gi|332797112|ref|YP_004458612.1| - 0.1 12.8 2.2 1.3 9.2 0.2 2.9 2 1 1 3 3 3 0 Damage-inducible protein CinA KH domain SurA_N_2 PF13623.6 gi|332797112|ref|YP_004458612.1| - 0.14 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 SurA N-terminal domain DUF4898 PF16239.5 gi|332797113|ref|YP_004458613.1| - 5.9e-26 90.2 1.9 6.5e-26 90.1 1.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4898) DUF4312 PF14189.6 gi|332797113|ref|YP_004458613.1| - 0.015 15.2 0.3 0.079 12.9 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4312) DUF3023 PF11224.8 gi|332797113|ref|YP_004458613.1| - 0.096 12.5 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3023) PIN PF01850.21 gi|332797115|ref|YP_004458615.1| - 0.074 13.6 0.0 0.15 12.6 0.0 1.5 1 0 0 1 1 1 0 PIN domain DsbC_N PF10411.9 gi|332797117|ref|YP_004458617.1| - 0.085 12.3 0.2 1.9 8.0 0.1 2.4 2 0 0 2 2 2 0 Disulfide bond isomerase protein N-terminus RRF PF01765.19 gi|332797118|ref|YP_004458618.1| - 0.072 13.0 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Ribosome recycling factor FliJ PF02050.16 gi|332797118|ref|YP_004458618.1| - 0.2 11.9 0.0 0.38 11.0 0.0 1.5 1 0 0 1 1 1 0 Flagellar FliJ protein PaREP1 PF05942.11 gi|332797119|ref|YP_004458619.1| - 5.1e-18 65.1 0.1 6.9e-18 64.7 0.1 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family ParE_toxin PF05016.15 gi|332797120|ref|YP_004458620.1| - 0.0002 21.9 0.1 0.00028 21.4 0.1 1.2 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE DrsE PF02635.15 gi|332797123|ref|YP_004458623.1| - 1.1e-05 25.8 0.0 1.8e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 DsrE/DsrF-like family Sugar_tr PF00083.24 gi|332797124|ref|YP_004458624.1| - 2.2e-53 181.7 18.6 2.8e-53 181.4 18.6 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332797124|ref|YP_004458624.1| - 1.8e-20 73.2 39.6 6.9e-18 64.7 28.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Monooxygenase_B PF04744.12 gi|332797124|ref|YP_004458624.1| - 0.082 11.7 0.0 0.13 11.0 0.0 1.2 1 0 0 1 1 1 0 Monooxygenase subunit B protein DUF1129 PF06570.11 gi|332797124|ref|YP_004458624.1| - 0.96 8.9 11.7 0.13 11.8 1.2 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1129) ATPase_2 PF01637.18 gi|332797125|ref|YP_004458625.1| - 1e-20 74.7 7.8 1.2e-20 74.4 5.1 2.1 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|332797125|ref|YP_004458625.1| - 1.4e-12 47.8 1.7 1.2e-10 41.6 0.2 3.2 1 1 2 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|332797125|ref|YP_004458625.1| - 1.2e-05 25.6 0.0 2.8e-05 24.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|332797125|ref|YP_004458625.1| - 2.8e-05 24.6 0.0 6.8e-05 23.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|332797125|ref|YP_004458625.1| - 0.0017 18.8 0.0 0.012 16.0 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP120 PF08623.10 gi|332797126|ref|YP_004458626.1| - 0.0031 17.3 0.3 0.0031 17.3 0.3 1.0 1 0 0 1 1 1 1 TATA-binding protein interacting (TIP20) DNA_pol3_a_NII PF11490.8 gi|332797126|ref|YP_004458626.1| - 0.018 14.9 0.5 0.02 14.8 0.5 1.1 1 0 0 1 1 1 0 DNA polymerase III polC-type N-terminus II Endotoxin_C2 PF18449.1 gi|332797126|ref|YP_004458626.1| - 0.02 15.2 0.5 0.034 14.5 0.5 1.3 1 0 0 1 1 1 0 Delta endotoxin APG6_N PF17675.1 gi|332797126|ref|YP_004458626.1| - 0.052 14.1 0.1 0.056 14.0 0.1 1.0 1 0 0 1 1 1 0 Apg6 coiled-coil region DnaA_N PF11638.8 gi|332797126|ref|YP_004458626.1| - 0.1 12.4 0.0 0.15 11.9 0.0 1.3 1 1 0 1 1 1 0 DnaA N-terminal domain Methyltransf_25 PF13649.6 gi|332797127|ref|YP_004458627.1| - 2e-06 28.4 0.0 2.9e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332797127|ref|YP_004458627.1| - 0.004 17.9 0.0 0.01 16.6 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_16 PF10294.9 gi|332797127|ref|YP_004458627.1| - 0.045 13.5 0.0 0.07 12.9 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase B12-binding PF02310.19 gi|332797127|ref|YP_004458627.1| - 0.074 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 B12 binding domain Acylphosphatase PF00708.18 gi|332797128|ref|YP_004458628.1| - 0.009 16.4 0.2 0.02 15.3 0.0 1.6 2 0 0 2 2 2 1 Acylphosphatase VHS PF00790.19 gi|332797128|ref|YP_004458628.1| - 0.04 13.8 0.0 0.076 12.9 0.0 1.4 1 1 0 1 1 1 0 VHS domain DUF1887 PF09002.11 gi|332797129|ref|YP_004458629.1| - 0.0023 16.7 0.5 0.0059 15.3 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1887) CTV_P13 PF06922.11 gi|332797130|ref|YP_004458630.1| - 0.062 13.4 0.2 0.1 12.7 0.2 1.4 1 0 0 1 1 1 0 Citrus tristeza virus P13 protein Lactamase_B PF00753.27 gi|332797131|ref|YP_004458631.1| - 2.6e-17 63.5 0.1 3.5e-17 63.0 0.1 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily DUF3211 PF11485.8 gi|332797132|ref|YP_004458632.1| - 0.014 15.7 5.9 0.023 14.9 3.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3211) Lipase_GDSL_3 PF14606.6 gi|332797132|ref|YP_004458632.1| - 0.047 13.8 0.2 8 6.5 0.0 2.4 2 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family PPV_E1_N PF00524.18 gi|332797132|ref|YP_004458632.1| - 0.077 13.4 0.7 0.15 12.5 0.7 1.5 1 0 0 1 1 1 0 E1 Protein, N terminal domain SGL PF08450.12 gi|332797134|ref|YP_004458634.1| - 7e-08 32.4 0.1 0.017 14.7 0.0 3.8 1 1 3 4 4 4 3 SMP-30/Gluconolactonase/LRE-like region NHL PF01436.21 gi|332797134|ref|YP_004458634.1| - 0.0075 16.3 2.7 34 4.7 0.1 5.3 7 0 0 7 7 7 1 NHL repeat PQQ PF01011.21 gi|332797134|ref|YP_004458634.1| - 0.08 12.9 14.2 4.8 7.3 1.7 4.8 4 1 1 5 5 5 0 PQQ enzyme repeat PQQ_3 PF13570.6 gi|332797134|ref|YP_004458634.1| - 0.18 12.4 11.9 2.5 8.7 0.2 5.3 5 1 0 5 5 5 0 PQQ-like domain EamA PF00892.20 gi|332797135|ref|YP_004458635.1| - 7e-20 71.6 37.1 1.9e-13 50.8 13.5 2.6 2 1 0 2 2 2 2 EamA-like transporter family HTH_24 PF13412.6 gi|332797136|ref|YP_004458636.1| - 6.7e-06 25.6 0.3 9.8e-06 25.0 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HxlR PF01638.17 gi|332797136|ref|YP_004458636.1| - 1.3e-05 25.0 0.3 3.4e-05 23.6 0.3 1.6 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_DeoR PF08220.12 gi|332797136|ref|YP_004458636.1| - 0.00024 20.8 0.1 0.00036 20.2 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_45 PF14947.6 gi|332797136|ref|YP_004458636.1| - 0.00038 20.4 0.5 0.00052 19.9 0.5 1.3 1 1 0 1 1 1 1 Winged helix-turn-helix Rrf2 PF02082.20 gi|332797136|ref|YP_004458636.1| - 0.0051 17.1 0.1 0.0063 16.8 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_9 PF08221.11 gi|332797136|ref|YP_004458636.1| - 0.0054 16.8 0.2 0.012 15.7 0.1 1.6 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_5 PF01022.20 gi|332797136|ref|YP_004458636.1| - 0.0069 16.2 0.1 0.0098 15.7 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|332797136|ref|YP_004458636.1| - 0.0094 16.1 0.1 0.012 15.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HemN_C PF06969.16 gi|332797136|ref|YP_004458636.1| - 0.011 15.8 0.0 0.013 15.6 0.0 1.1 1 0 0 1 1 1 0 HemN C-terminal domain PCI PF01399.27 gi|332797136|ref|YP_004458636.1| - 0.022 15.2 0.1 0.027 15.0 0.1 1.2 1 0 0 1 1 1 0 PCI domain HTH_11 PF08279.12 gi|332797136|ref|YP_004458636.1| - 0.028 14.4 0.1 0.048 13.6 0.1 1.4 1 0 0 1 1 1 0 HTH domain DUF505 PF04458.12 gi|332797136|ref|YP_004458636.1| - 0.036 12.4 0.3 0.037 12.4 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF977 PF06163.11 gi|332797136|ref|YP_004458636.1| - 0.04 13.9 0.0 0.048 13.6 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) PAS_12 PF18095.1 gi|332797136|ref|YP_004458636.1| - 0.057 13.0 0.1 0.06 13.0 0.1 1.0 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain CbiA PF01656.23 gi|332797137|ref|YP_004458637.1| - 0.0023 18.0 0.2 0.0049 16.9 0.2 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|332797137|ref|YP_004458637.1| - 0.011 15.7 2.2 0.054 13.4 0.1 2.5 1 1 2 3 3 3 0 AAA domain Recep_L_domain PF01030.24 gi|332797137|ref|YP_004458637.1| - 0.062 13.4 0.1 0.18 12.0 0.1 1.7 2 0 0 2 2 2 0 Receptor L domain AAA_18 PF13238.6 gi|332797137|ref|YP_004458637.1| - 0.077 13.6 0.0 0.18 12.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain GHL13 PF14883.6 gi|332797137|ref|YP_004458637.1| - 0.094 11.8 0.0 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase family 13 CBP_BcsQ PF06564.12 gi|332797137|ref|YP_004458637.1| - 0.16 11.4 0.0 0.37 10.2 0.0 1.6 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ ProRS-C_2 PF09181.10 gi|332797137|ref|YP_004458637.1| - 0.18 12.0 0.2 0.18 12.0 0.2 2.1 2 1 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal NTP_transferase PF00483.23 gi|332797139|ref|YP_004458639.1| - 4.8e-15 55.8 0.2 9.2e-14 51.6 0.1 2.1 1 1 1 2 2 2 1 Nucleotidyl transferase Hexapep PF00132.24 gi|332797139|ref|YP_004458639.1| - 2.4e-12 46.0 9.5 2.2e-06 27.1 1.4 4.9 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) NTP_transf_3 PF12804.7 gi|332797139|ref|YP_004458639.1| - 1.6e-10 41.6 0.0 2.5e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|332797139|ref|YP_004458639.1| - 0.00077 19.3 0.0 0.0011 18.7 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|332797139|ref|YP_004458639.1| - 0.0036 17.0 1.1 13 5.6 0.1 4.0 3 1 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|332797139|ref|YP_004458639.1| - 0.096 11.6 0.6 1.5 7.7 0.6 2.1 1 1 0 1 1 1 0 L-fucokinase Hydrolase PF00702.26 gi|332797139|ref|YP_004458639.1| - 0.13 12.6 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase SIS PF01380.22 gi|332797140|ref|YP_004458640.1| - 6.9e-47 158.6 2.4 1.1e-26 93.2 0.7 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|332797140|ref|YP_004458640.1| - 1.4e-20 73.8 0.0 4.6e-20 72.2 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|332797140|ref|YP_004458640.1| - 5.8e-17 61.8 0.0 4e-16 59.0 0.0 2.4 3 0 0 3 3 3 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|332797140|ref|YP_004458640.1| - 0.0006 18.8 0.0 0.00096 18.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|332797140|ref|YP_004458640.1| - 0.01 15.8 0.0 0.027 14.5 0.0 1.8 1 0 0 1 1 1 0 SIS domain GHMP_kinases_N PF00288.26 gi|332797141|ref|YP_004458641.1| - 6.1e-09 36.0 0.0 1.5e-08 34.8 0.0 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|332797141|ref|YP_004458641.1| - 6.2e-09 36.1 0.2 1.6e-08 34.8 0.2 1.7 1 0 0 1 1 1 1 GHMP kinases C terminal tRNA-Thr_ED PF08915.11 gi|332797142|ref|YP_004458642.1| - 3.7e-52 176.0 0.3 6.1e-52 175.3 0.3 1.4 1 0 0 1 1 1 1 Archaea-specific editing domain of threonyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|332797142|ref|YP_004458642.1| - 2.3e-20 72.5 0.8 1.5e-19 70.0 0.4 2.4 3 0 0 3 3 3 1 Anticodon binding domain Beta-Casp PF10996.8 gi|332797143|ref|YP_004458643.1| - 3.7e-17 62.6 0.0 9.5e-17 61.3 0.0 1.7 2 0 0 2 2 2 1 Beta-Casp domain Lactamase_B_6 PF16661.5 gi|332797143|ref|YP_004458643.1| - 9.9e-12 44.7 0.0 2.5e-11 43.4 0.0 1.6 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain RMMBL PF07521.12 gi|332797143|ref|YP_004458643.1| - 2e-10 40.5 0.1 4.1e-10 39.4 0.1 1.5 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|332797143|ref|YP_004458643.1| - 5.8e-07 29.7 0.0 1.1e-06 28.8 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332797143|ref|YP_004458643.1| - 2e-06 27.4 0.0 4.5e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|332797143|ref|YP_004458643.1| - 0.00017 21.6 0.0 0.00036 20.5 0.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Antibiotic_NAT PF02522.14 gi|332797143|ref|YP_004458643.1| - 0.0096 15.8 0.0 0.25 11.1 0.0 2.3 2 0 0 2 2 2 1 Aminoglycoside 3-N-acetyltransferase PDEase_II PF02112.15 gi|332797143|ref|YP_004458643.1| - 0.017 14.3 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II CheB_methylest PF01339.17 gi|332797143|ref|YP_004458643.1| - 0.042 13.6 0.2 0.087 12.5 0.2 1.6 1 0 0 1 1 1 0 CheB methylesterase GrlR PF16518.5 gi|332797143|ref|YP_004458643.1| - 0.055 13.4 0.0 0.16 11.9 0.0 1.8 1 0 0 1 1 1 0 T3SS negative regulator,GrlR UBA PF00627.31 gi|332797144|ref|YP_004458644.1| - 0.0093 15.9 0.1 0.025 14.5 0.0 1.7 2 0 0 2 2 2 1 UBA/TS-N domain Gp_dh_N PF00044.24 gi|332797144|ref|YP_004458644.1| - 0.019 15.3 0.4 0.026 14.8 0.4 1.4 1 1 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HOIP-UBA PF16678.5 gi|332797144|ref|YP_004458644.1| - 0.047 13.7 0.1 0.066 13.2 0.1 1.4 1 0 0 1 1 1 0 HOIP UBA domain pair MAT1-1-2 PF17043.5 gi|332797144|ref|YP_004458644.1| - 0.1 12.5 0.1 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Mating type protein 1-1-2 of unknown function HTH_3 PF01381.22 gi|332797145|ref|YP_004458645.1| - 1e-11 44.7 0.0 2e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|332797145|ref|YP_004458645.1| - 2.4e-07 31.0 0.0 3.8e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|332797145|ref|YP_004458645.1| - 2.8e-06 27.3 0.0 5.2e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MqsA_antitoxin PF15731.5 gi|332797145|ref|YP_004458645.1| - 0.013 15.6 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_24 PF13412.6 gi|332797145|ref|YP_004458645.1| - 0.031 13.8 0.1 0.077 12.6 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|332797145|ref|YP_004458645.1| - 0.16 11.8 0.0 0.35 10.8 0.0 1.5 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_25 PF13413.6 gi|332797145|ref|YP_004458645.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PALP PF00291.25 gi|332797147|ref|YP_004458647.1| - 1.6e-57 195.2 0.0 1.8e-57 195.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DFP PF04127.15 gi|332797147|ref|YP_004458647.1| - 0.13 12.1 0.3 0.23 11.3 0.3 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein zf-FPG_IleRS PF06827.14 gi|332797147|ref|YP_004458647.1| - 0.87 9.5 3.8 5.9 6.9 0.2 2.5 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Ammonium_transp PF00909.21 gi|332797148|ref|YP_004458648.1| - 3.8e-94 315.6 25.6 4.6e-94 315.4 25.6 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family DUF3188 PF11384.8 gi|332797148|ref|YP_004458648.1| - 0.027 14.2 0.0 0.14 11.9 0.0 2.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3188) PsiE PF06146.12 gi|332797149|ref|YP_004458649.1| - 4.8e-08 33.3 4.0 4.8e-08 33.3 4.0 2.1 1 1 1 2 2 2 1 Phosphate-starvation-inducible E Amidinotransf PF02274.17 gi|332797150|ref|YP_004458650.1| - 1.7e-48 165.5 0.4 2.6e-48 164.9 0.4 1.3 1 0 0 1 1 1 1 Amidinotransferase PAD_porph PF04371.15 gi|332797150|ref|YP_004458650.1| - 0.024 13.9 0.1 0.069 12.4 0.1 1.7 1 1 0 1 1 1 0 Porphyromonas-type peptidyl-arginine deiminase Ins_allergen_rp PF06757.13 gi|332797150|ref|YP_004458650.1| - 0.083 12.9 3.2 0.4 10.6 0.7 2.9 2 2 0 2 2 2 0 Insect allergen related repeat, nitrile-specifier detoxification Med7 PF05983.11 gi|332797150|ref|YP_004458650.1| - 0.09 12.8 0.5 0.2 11.7 0.5 1.5 1 0 0 1 1 1 0 MED7 protein BING4CT PF08149.11 gi|332797150|ref|YP_004458650.1| - 0.94 9.3 3.4 1.9 8.3 0.3 2.9 3 0 0 3 3 3 0 BING4CT (NUC141) domain HP0268 PF18618.1 gi|332797150|ref|YP_004458650.1| - 1.3 9.5 6.9 11 6.5 0.1 3.7 3 1 2 5 5 5 0 HP0268 CbiA PF01656.23 gi|332797151|ref|YP_004458651.1| - 1.5e-07 31.5 0.0 1.9e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|332797151|ref|YP_004458651.1| - 0.00019 21.4 6.0 0.0011 18.9 6.0 2.1 1 1 0 1 1 1 1 AAA domain ParA PF10609.9 gi|332797151|ref|YP_004458651.1| - 0.0044 16.5 0.0 0.0094 15.4 0.0 1.5 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|332797151|ref|YP_004458651.1| - 0.0099 15.2 0.0 0.014 14.7 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|332797151|ref|YP_004458651.1| - 0.023 13.9 0.3 0.058 12.6 0.0 1.7 2 0 0 2 2 2 0 Anion-transporting ATPase MMPL PF03176.15 gi|332797153|ref|YP_004458653.1| - 6.1e-63 212.8 16.2 1.5e-35 122.7 2.5 2.3 2 0 0 2 2 2 2 MMPL family SurA_N_3 PF13624.6 gi|332797153|ref|YP_004458653.1| - 0.14 12.0 0.2 0.9 9.3 0.0 2.6 2 0 0 2 2 2 0 SurA N-terminal domain DUF2179 PF10035.9 gi|332797153|ref|YP_004458653.1| - 0.21 11.4 1.3 5.3 6.9 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) Glycos_transf_1 PF00534.20 gi|332797154|ref|YP_004458654.1| - 6e-32 110.5 0.1 9.7e-32 109.9 0.1 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|332797154|ref|YP_004458654.1| - 7.8e-21 74.9 0.0 1.3e-20 74.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_20 PF00982.21 gi|332797154|ref|YP_004458654.1| - 0.0014 17.4 1.1 1.2 7.8 0.4 3.0 2 1 1 3 3 3 3 Glycosyltransferase family 20 Glyco_trans_1_2 PF13524.6 gi|332797154|ref|YP_004458654.1| - 0.0018 18.7 0.0 0.0055 17.1 0.0 1.8 1 0 0 1 1 1 1 Glycosyl transferases group 1 ETF PF01012.21 gi|332797154|ref|YP_004458654.1| - 0.15 12.0 0.0 0.26 11.1 0.0 1.4 1 0 0 1 1 1 0 Electron transfer flavoprotein domain DUF2179 PF10035.9 gi|332797155|ref|YP_004458655.1| - 0.072 12.9 0.4 3.2 7.6 0.1 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) Usp PF00582.26 gi|332797156|ref|YP_004458656.1| - 4.2e-39 134.3 0.9 4.7e-39 134.1 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|332797156|ref|YP_004458656.1| - 0.027 13.9 0.0 0.038 13.4 0.0 1.3 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel ADH_zinc_N PF00107.26 gi|332797156|ref|YP_004458656.1| - 0.036 14.0 0.1 0.046 13.7 0.1 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF2325 PF10087.9 gi|332797156|ref|YP_004458656.1| - 0.098 12.8 0.0 0.4 10.8 0.0 2.1 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2325) QueC PF06508.13 gi|332797158|ref|YP_004458658.1| - 6.1e-61 205.6 0.0 8.8e-61 205.1 0.0 1.2 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC GATase_7 PF13537.6 gi|332797158|ref|YP_004458658.1| - 9.4e-16 57.8 0.0 1.6e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|332797158|ref|YP_004458658.1| - 1.2e-11 44.9 0.0 2e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain ThiI PF02568.14 gi|332797158|ref|YP_004458658.1| - 1.9e-09 37.4 0.1 1.2e-08 34.8 0.1 2.2 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|332797158|ref|YP_004458658.1| - 6.5e-06 25.2 0.0 3.3e-05 22.9 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|332797158|ref|YP_004458658.1| - 0.0028 17.4 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 PP-loop family DUF3700 PF12481.8 gi|332797158|ref|YP_004458658.1| - 0.0036 16.8 0.0 0.018 14.5 0.0 1.9 1 1 1 2 2 2 1 Aluminium induced protein Asn_synthase PF00733.21 gi|332797158|ref|YP_004458658.1| - 0.013 15.1 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 Asparagine synthase NAD_synthase PF02540.17 gi|332797158|ref|YP_004458658.1| - 0.11 11.6 0.0 0.87 8.7 0.0 2.1 2 0 0 2 2 2 0 NAD synthase NTP_transferase PF00483.23 gi|332797160|ref|YP_004458660.1| - 5.1e-31 108.1 0.0 6e-31 107.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|332797160|ref|YP_004458660.1| - 1.8e-08 34.9 0.0 2.3e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|332797160|ref|YP_004458660.1| - 0.00021 21.1 0.0 0.00032 20.5 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4224 PF13986.6 gi|332797160|ref|YP_004458660.1| - 0.077 12.9 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4224) DNA_binding_1 PF01035.20 gi|332797161|ref|YP_004458661.1| - 9.5e-26 89.7 0.0 1.2e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Sigma70_r4_2 PF08281.12 gi|332797161|ref|YP_004458661.1| - 0.0026 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 Methyltransf_1N PF02870.15 gi|332797161|ref|YP_004458661.1| - 0.025 15.4 0.0 0.19 12.6 0.0 2.1 1 1 0 1 1 1 0 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HTH_23 PF13384.6 gi|332797161|ref|YP_004458661.1| - 0.042 13.7 0.0 0.063 13.1 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.6 gi|332797161|ref|YP_004458661.1| - 0.055 13.6 0.0 0.081 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|332797161|ref|YP_004458661.1| - 0.11 12.2 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain tRNA-synt_2b PF00587.25 gi|332797162|ref|YP_004458662.1| - 1.2e-39 136.1 0.0 2.9e-39 134.9 0.0 1.7 2 1 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|332797162|ref|YP_004458662.1| - 4.4e-18 65.2 3.2 7.9e-18 64.4 0.9 2.5 2 0 0 2 2 2 1 Anticodon binding domain Ribosomal_S30AE PF02482.19 gi|332797162|ref|YP_004458662.1| - 0.3 11.9 1.8 4.5 8.1 0.2 3.3 3 1 1 4 4 4 0 Sigma 54 modulation protein / S30EA ribosomal protein Glyco_tran_28_C PF04101.16 gi|332797163|ref|YP_004458663.1| - 6.6e-08 32.7 0.0 1.9e-07 31.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_3 PF13528.6 gi|332797163|ref|YP_004458663.1| - 0.0059 15.9 0.0 0.012 14.9 0.0 1.3 1 1 0 1 1 1 1 Glycosyl transferase family 1 Alg14 PF08660.11 gi|332797163|ref|YP_004458663.1| - 0.0075 16.2 0.8 0.16 11.9 0.2 2.8 2 1 0 2 2 2 1 Oligosaccharide biosynthesis protein Alg14 like DUF2117 PF09890.9 gi|332797163|ref|YP_004458663.1| - 0.0098 15.4 0.2 0.014 14.9 0.2 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2117) HhH-GPD PF00730.25 gi|332797164|ref|YP_004458664.1| - 3.9e-11 43.3 0.0 5.1e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|332797164|ref|YP_004458664.1| - 0.0047 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|332797164|ref|YP_004458664.1| - 0.0081 16.7 0.1 0.04 14.5 0.1 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix domain P53_C PF11619.8 gi|332797164|ref|YP_004458664.1| - 0.036 14.1 0.3 0.1 12.7 0.3 1.7 1 1 0 1 1 1 0 Transcription factor P53 - C terminal domain DXPR_C PF13288.6 gi|332797164|ref|YP_004458664.1| - 0.048 13.9 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 DXP reductoisomerase C-terminal domain DDE_Tnp_1_assoc PF13808.6 gi|332797164|ref|YP_004458664.1| - 0.06 13.4 0.0 6.9 6.8 0.0 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-associated HHH_2 PF12826.7 gi|332797164|ref|YP_004458664.1| - 0.12 12.5 0.1 0.36 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif ATP-grasp_2 PF08442.10 gi|332797165|ref|YP_004458665.1| - 5.5e-31 107.7 1.6 9.1e-30 103.7 1.6 2.4 1 1 0 1 1 1 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|332797165|ref|YP_004458665.1| - 9.8e-16 57.9 0.0 1.7e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_5 PF13549.6 gi|332797165|ref|YP_004458665.1| - 0.001 18.6 0.1 0.09 12.2 0.1 3.0 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|332797165|ref|YP_004458665.1| - 0.076 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 ATP-grasp domain CoA_binding PF02629.19 gi|332797166|ref|YP_004458666.1| - 1.6e-22 80.0 7.2 1.7e-22 79.9 0.8 2.6 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|332797166|ref|YP_004458666.1| - 2.9e-13 49.9 1.6 4.6e-13 49.2 1.6 1.3 1 0 0 1 1 1 1 CoA-ligase CoA_binding_2 PF13380.6 gi|332797166|ref|YP_004458666.1| - 2.3e-10 41.0 0.3 1.7e-09 38.2 0.1 2.2 2 1 0 2 2 2 1 CoA binding domain Succ_CoA_lig PF13607.6 gi|332797166|ref|YP_004458666.1| - 1.3e-07 31.5 0.1 2e-07 30.9 0.1 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain GFO_IDH_MocA PF01408.22 gi|332797166|ref|YP_004458666.1| - 0.00049 20.9 0.1 0.0024 18.7 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Radical_SAM PF04055.21 gi|332797166|ref|YP_004458666.1| - 0.042 14.2 0.1 0.095 13.1 0.1 1.6 1 0 0 1 1 1 0 Radical SAM superfamily PNP_UDP_1 PF01048.20 gi|332797169|ref|YP_004458669.1| - 2.1e-37 128.7 0.0 2.5e-37 128.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily HD PF01966.22 gi|332797170|ref|YP_004458670.1| - 5.4e-11 42.8 0.1 1.6e-10 41.3 0.1 1.8 1 0 0 1 1 1 1 HD domain HDOD PF08668.12 gi|332797170|ref|YP_004458670.1| - 0.0037 16.8 0.0 0.0065 16.0 0.0 1.3 1 0 0 1 1 1 1 HDOD domain MDD_C PF18376.1 gi|332797171|ref|YP_004458671.1| - 3.9e-36 124.6 0.1 9.9e-36 123.2 0.0 1.6 1 1 1 2 2 2 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|332797171|ref|YP_004458671.1| - 8.8e-08 32.3 1.8 1.6e-07 31.4 1.8 1.4 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_N PF00288.26 gi|332797172|ref|YP_004458672.1| - 4.4e-13 49.3 0.1 1.4e-12 47.7 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|332797172|ref|YP_004458672.1| - 4.1e-08 33.5 0.1 8.4e-08 32.5 0.1 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal DUF16 PF01519.16 gi|332797173|ref|YP_004458673.1| - 0.0065 16.9 1.5 0.097 13.2 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function DUF16 Phage_int_SAM_6 PF18644.1 gi|332797173|ref|YP_004458673.1| - 0.036 14.1 0.7 0.067 13.2 0.7 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain DED PF01335.21 gi|332797173|ref|YP_004458673.1| - 0.1 12.9 6.9 1.9 8.8 0.3 2.6 2 0 0 2 2 2 0 Death effector domain DUF4085 PF13315.6 gi|332797173|ref|YP_004458673.1| - 0.18 11.4 3.7 0.28 10.8 3.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4085) HTH_45 PF14947.6 gi|332797174|ref|YP_004458674.1| - 5.2e-23 80.8 4.6 6.5e-23 80.5 4.6 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4393 PF14337.6 gi|332797174|ref|YP_004458674.1| - 0.021 14.6 1.2 0.021 14.7 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) Rrf2 PF02082.20 gi|332797174|ref|YP_004458674.1| - 0.031 14.6 0.1 0.047 14.0 0.1 1.3 1 1 0 1 1 1 0 Transcriptional regulator HTH_27 PF13463.6 gi|332797174|ref|YP_004458674.1| - 0.033 14.7 0.0 0.059 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mrr_N PF14338.6 gi|332797174|ref|YP_004458674.1| - 0.062 13.4 0.0 0.39 10.9 0.0 2.0 1 1 1 2 2 2 0 Mrr N-terminal domain HemN_C PF06969.16 gi|332797174|ref|YP_004458674.1| - 0.083 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain DASH_Duo1 PF08651.10 gi|332797174|ref|YP_004458674.1| - 0.17 11.7 2.2 0.44 10.4 0.1 2.2 2 0 0 2 2 2 0 DASH complex subunit Duo1 TrmB PF01978.19 gi|332797176|ref|YP_004458676.1| - 2e-09 37.2 0.0 2.9e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|332797176|ref|YP_004458676.1| - 2.9e-05 23.9 0.1 5e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|332797176|ref|YP_004458676.1| - 9.3e-05 22.6 0.0 0.00031 20.9 0.0 1.8 1 1 1 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|332797176|ref|YP_004458676.1| - 0.00063 19.6 0.0 0.0011 18.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family SMC_ScpB PF04079.16 gi|332797176|ref|YP_004458676.1| - 0.00064 19.4 0.0 0.00086 18.9 0.0 1.3 1 1 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_24 PF13412.6 gi|332797176|ref|YP_004458676.1| - 0.0012 18.3 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PaaX PF07848.12 gi|332797176|ref|YP_004458676.1| - 0.0022 18.2 0.0 0.076 13.2 0.0 2.2 2 0 0 2 2 2 1 PaaX-like protein HTH_11 PF08279.12 gi|332797176|ref|YP_004458676.1| - 0.0038 17.1 0.1 0.0062 16.5 0.1 1.3 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|332797176|ref|YP_004458676.1| - 0.0063 16.1 0.1 0.013 15.1 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|332797176|ref|YP_004458676.1| - 0.0063 16.4 0.0 0.0083 16.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.6 gi|332797176|ref|YP_004458676.1| - 0.021 14.6 0.0 0.046 13.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain EzrA PF06160.12 gi|332797176|ref|YP_004458676.1| - 0.027 12.7 0.2 0.11 10.6 0.0 1.8 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA HTH_Crp_2 PF13545.6 gi|332797176|ref|YP_004458676.1| - 0.028 14.4 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|332797176|ref|YP_004458676.1| - 0.03 14.1 0.6 0.32 10.7 0.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_10 PF04967.12 gi|332797176|ref|YP_004458676.1| - 0.04 13.7 0.1 0.086 12.7 0.0 1.6 2 0 0 2 2 2 0 HTH DNA binding domain HTH_36 PF13730.6 gi|332797176|ref|YP_004458676.1| - 0.078 12.9 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|332797176|ref|YP_004458676.1| - 0.094 12.8 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain CoA_binding_2 PF13380.6 gi|332797177|ref|YP_004458677.1| - 7.5e-38 129.6 0.0 8.5e-38 129.4 0.0 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|332797177|ref|YP_004458677.1| - 1.4e-05 25.6 0.0 2.2e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain FAA_hydrolase PF01557.18 gi|332797178|ref|YP_004458678.1| - 2.5e-69 233.3 0.0 3e-69 233.0 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family KH_2 PF07650.17 gi|332797178|ref|YP_004458678.1| - 0.00074 19.3 1.1 0.0015 18.3 1.1 1.5 1 0 0 1 1 1 1 KH domain NicO PF03824.16 gi|332797179|ref|YP_004458679.1| - 0.0029 17.0 3.7 0.0029 17.0 3.7 2.1 2 0 0 2 2 2 1 High-affinity nickel-transport protein DUF1641 PF07849.11 gi|332797180|ref|YP_004458680.1| - 7.1e-12 45.0 0.2 1.6e-11 43.9 0.2 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) MgtE_N PF03448.17 gi|332797180|ref|YP_004458680.1| - 6e-05 23.6 42.1 1.2 9.8 2.9 8.1 1 1 3 6 6 6 5 MgtE intracellular N domain Importin_rep_6 PF18829.1 gi|332797180|ref|YP_004458680.1| - 0.01 16.0 2.7 3.4 7.9 0.2 3.6 3 1 0 3 3 3 0 Importin repeat 6 REF PF05755.12 gi|332797180|ref|YP_004458680.1| - 0.013 15.4 1.4 4.2 7.1 0.2 3.3 2 2 0 2 2 2 0 Rubber elongation factor protein (REF) DnaB_bind PF10410.9 gi|332797180|ref|YP_004458680.1| - 0.039 14.1 3.5 37 4.6 0.0 5.4 4 2 1 5 5 5 0 DnaB-helicase binding domain of primase ANAPC16 PF17256.2 gi|332797180|ref|YP_004458680.1| - 0.083 13.3 0.4 30 5.1 0.0 3.8 2 1 1 3 3 3 0 Anaphase-promoting complex, subunit 16 RNase_3_N PF18497.1 gi|332797180|ref|YP_004458680.1| - 4.8 7.5 10.9 1.8 8.8 1.3 4.1 4 3 1 5 5 5 0 Ribonuclease III N-terminal domain DUF202 PF02656.15 gi|332797181|ref|YP_004458681.1| - 2.2e-20 72.9 3.2 2.4e-20 72.7 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF202) Claudin_2 PF13903.6 gi|332797181|ref|YP_004458681.1| - 0.012 15.4 1.1 0.013 15.3 0.3 1.3 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction SdpI PF13630.6 gi|332797181|ref|YP_004458681.1| - 0.12 12.5 5.0 0.18 11.9 0.1 2.2 1 1 0 2 2 2 0 SdpI/YhfL protein family Tetraspanin PF00335.20 gi|332797181|ref|YP_004458681.1| - 3.4 7.3 6.5 0.77 9.4 0.8 1.8 1 1 0 1 1 1 0 Tetraspanin family Na_Ca_ex PF01699.24 gi|332797182|ref|YP_004458682.1| - 2.2e-33 115.4 33.2 1.8e-19 70.2 12.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF2157 PF09925.9 gi|332797182|ref|YP_004458682.1| - 0.48 10.2 7.1 1.2 9.0 0.1 3.0 3 1 0 3 3 3 0 Predicted membrane protein (DUF2157) HTH_AsnC-type PF13404.6 gi|332797183|ref|YP_004458683.1| - 1.2e-24 85.8 0.6 9.6e-13 47.7 0.1 2.3 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|332797183|ref|YP_004458683.1| - 3.1e-24 84.3 5.5 1.6e-13 49.9 0.4 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|332797183|ref|YP_004458683.1| - 2.4e-11 43.3 0.2 0.0002 21.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|332797183|ref|YP_004458683.1| - 2.8e-07 30.4 0.2 0.0054 16.6 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|332797183|ref|YP_004458683.1| - 6.9e-06 26.0 0.0 0.0029 17.6 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|332797183|ref|YP_004458683.1| - 8.9e-06 25.6 1.6 0.0068 16.3 0.2 2.4 2 0 0 2 2 2 2 HTH domain HTH_28 PF13518.6 gi|332797183|ref|YP_004458683.1| - 8.4e-05 22.6 0.0 0.01 15.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|332797183|ref|YP_004458683.1| - 9e-05 22.3 0.0 0.21 11.5 0.0 2.3 2 0 0 2 2 2 2 MarR family TrmB PF01978.19 gi|332797183|ref|YP_004458683.1| - 0.00013 21.8 0.1 0.026 14.4 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|332797183|ref|YP_004458683.1| - 0.00049 20.5 0.4 0.57 10.7 0.0 3.0 3 0 0 3 3 3 1 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|332797183|ref|YP_004458683.1| - 0.00089 19.3 0.1 0.17 12.0 0.0 2.5 2 0 0 2 2 2 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_23 PF13384.6 gi|332797183|ref|YP_004458683.1| - 0.00095 18.9 0.0 0.96 9.3 0.0 2.5 2 0 0 2 2 2 2 Homeodomain-like domain HTH_Mga PF08280.11 gi|332797183|ref|YP_004458683.1| - 0.0024 17.9 1.1 1.1 9.3 0.1 2.5 2 0 0 2 2 2 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.6 gi|332797183|ref|YP_004458683.1| - 0.0025 17.7 0.1 0.34 10.9 0.0 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|332797183|ref|YP_004458683.1| - 0.0026 17.5 0.3 0.052 13.3 0.1 2.4 2 0 0 2 2 2 1 LexA DNA binding domain Fe_dep_repress PF01325.19 gi|332797183|ref|YP_004458683.1| - 0.0031 17.7 0.1 3.2 8.0 0.0 2.5 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|332797183|ref|YP_004458683.1| - 0.0055 17.0 0.1 0.44 10.9 0.0 2.3 2 0 0 2 2 2 1 Transcriptional regulator HTH_10 PF04967.12 gi|332797183|ref|YP_004458683.1| - 0.0074 16.1 0.1 2.2 8.1 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain DDRGK PF09756.9 gi|332797183|ref|YP_004458683.1| - 0.03 13.9 0.3 6.8 6.2 0.0 2.2 2 0 0 2 2 2 0 DDRGK domain HTH_1 PF00126.27 gi|332797183|ref|YP_004458683.1| - 0.03 14.3 0.0 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family IF2_N PF04760.15 gi|332797183|ref|YP_004458683.1| - 0.032 14.0 0.1 0.26 11.1 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region B-block_TFIIIC PF04182.12 gi|332797183|ref|YP_004458683.1| - 0.038 14.2 0.1 0.82 9.9 0.0 2.4 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC HTH_Tnp_ISL3 PF13542.6 gi|332797183|ref|YP_004458683.1| - 0.077 12.4 0.0 9.3 5.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_34 PF13601.6 gi|332797183|ref|YP_004458683.1| - 0.084 13.1 0.0 1.8 8.8 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain RuvB_C PF05491.13 gi|332797183|ref|YP_004458683.1| - 0.098 12.6 0.2 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain HTH_30 PF13556.6 gi|332797183|ref|YP_004458683.1| - 0.15 11.9 0.0 0.33 10.8 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain SGL PF08450.12 gi|332797184|ref|YP_004458684.1| - 2e-79 266.7 0.2 2.3e-79 266.5 0.2 1.0 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Lactonase PF10282.9 gi|332797184|ref|YP_004458684.1| - 0.0046 16.3 0.0 1.8 7.7 0.0 2.2 2 0 0 2 2 2 2 Lactonase, 7-bladed beta-propeller Reg_prop PF07494.11 gi|332797184|ref|YP_004458684.1| - 0.029 14.6 0.4 15 6.2 0.1 3.4 2 0 0 2 2 2 0 Two component regulator propeller Peptidase_S9_N PF02897.15 gi|332797184|ref|YP_004458684.1| - 0.041 12.7 0.1 0.067 12.0 0.1 1.5 1 1 1 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Arylesterase PF01731.20 gi|332797184|ref|YP_004458684.1| - 0.067 13.4 0.0 0.59 10.4 0.0 2.5 3 0 0 3 3 3 0 Arylesterase Str_synth PF03088.16 gi|332797184|ref|YP_004458684.1| - 0.14 12.3 0.0 0.49 10.6 0.0 1.9 2 0 0 2 2 2 0 Strictosidine synthase HTH_5 PF01022.20 gi|332797185|ref|YP_004458685.1| - 8.6e-07 28.7 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|332797185|ref|YP_004458685.1| - 1.1e-06 28.4 0.1 2.1e-06 27.6 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|332797185|ref|YP_004458685.1| - 4e-05 23.1 0.3 0.00012 21.6 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|332797185|ref|YP_004458685.1| - 0.00021 21.1 0.0 0.00042 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|332797185|ref|YP_004458685.1| - 0.00058 19.8 0.0 0.0072 16.3 0.0 2.1 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|332797185|ref|YP_004458685.1| - 0.0009 19.1 0.1 0.0039 17.0 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|332797185|ref|YP_004458685.1| - 0.0016 18.2 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|332797185|ref|YP_004458685.1| - 0.0032 17.2 0.1 0.07 12.9 0.0 2.5 3 0 0 3 3 3 1 LexA DNA binding domain HTH_45 PF14947.6 gi|332797185|ref|YP_004458685.1| - 0.005 16.8 0.6 0.012 15.6 0.6 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|332797185|ref|YP_004458685.1| - 0.011 15.7 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|332797185|ref|YP_004458685.1| - 0.013 15.5 0.5 0.031 14.2 0.5 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.6 gi|332797185|ref|YP_004458685.1| - 0.018 15.5 0.3 0.1 13.1 0.1 2.1 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|332797185|ref|YP_004458685.1| - 0.019 14.8 0.0 0.092 12.6 0.1 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain RP-C PF03428.13 gi|332797185|ref|YP_004458685.1| - 0.04 13.6 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain DUF1803 PF08820.10 gi|332797185|ref|YP_004458685.1| - 0.047 13.7 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) LacI PF00356.21 gi|332797185|ref|YP_004458685.1| - 0.072 12.9 0.2 0.46 10.3 0.1 2.4 1 1 1 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_50 PF18024.1 gi|332797185|ref|YP_004458685.1| - 0.084 12.5 0.3 0.19 11.4 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|332797186|ref|YP_004458686.1| - 5.6e-17 61.5 0.2 9.2e-17 60.8 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|332797186|ref|YP_004458686.1| - 0.00057 19.7 0.1 0.0015 18.3 0.1 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) MarR PF01047.22 gi|332797186|ref|YP_004458686.1| - 0.0032 17.3 0.0 0.1 12.6 0.0 2.4 1 1 0 1 1 1 1 MarR family DUF505 PF04458.12 gi|332797186|ref|YP_004458686.1| - 0.0041 15.6 0.0 0.0053 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF505) TrmB PF01978.19 gi|332797186|ref|YP_004458686.1| - 0.0042 16.9 1.0 0.028 14.3 0.2 2.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.16 gi|332797186|ref|YP_004458686.1| - 0.0072 16.7 0.0 0.0099 16.2 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_42 PF06224.12 gi|332797186|ref|YP_004458686.1| - 0.0076 15.8 0.0 0.0081 15.7 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|332797186|ref|YP_004458686.1| - 0.011 15.6 1.3 0.44 10.5 0.0 2.9 4 0 0 4 4 4 0 HTH domain HTH_45 PF14947.6 gi|332797186|ref|YP_004458686.1| - 0.012 15.6 0.2 0.028 14.4 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix FUR PF01475.19 gi|332797186|ref|YP_004458686.1| - 0.013 15.7 0.2 0.032 14.4 0.0 1.7 2 0 0 2 2 2 0 Ferric uptake regulator family HxlR PF01638.17 gi|332797186|ref|YP_004458686.1| - 0.024 14.5 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|332797186|ref|YP_004458686.1| - 0.047 13.3 0.0 8.7 6.0 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1495 PF07381.11 gi|332797186|ref|YP_004458686.1| - 0.048 13.5 0.3 0.3 10.9 0.3 2.0 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) Replic_Relax PF13814.6 gi|332797186|ref|YP_004458686.1| - 0.058 13.4 0.0 0.073 13.1 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation Stork_head PF10264.9 gi|332797186|ref|YP_004458686.1| - 0.092 12.9 0.0 0.69 10.1 0.0 2.1 2 1 1 3 3 3 0 Winged helix Storkhead-box1 domain MerR PF00376.23 gi|332797186|ref|YP_004458686.1| - 0.1 12.4 0.2 0.28 11.0 0.0 1.8 2 0 0 2 2 2 0 MerR family regulatory protein DUF3116 PF11313.8 gi|332797186|ref|YP_004458686.1| - 0.1 12.5 0.1 0.19 11.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) Cdc6_C PF09079.11 gi|332797186|ref|YP_004458686.1| - 0.12 12.3 0.0 0.3 11.1 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain FtsK_SpoIIIE PF01580.18 gi|332797186|ref|YP_004458686.1| - 0.17 11.2 0.0 0.23 10.8 0.0 1.2 1 0 0 1 1 1 0 FtsK/SpoIIIE family MarR_2 PF12802.7 gi|332797186|ref|YP_004458686.1| - 0.17 11.8 0.0 1.4 8.8 0.0 2.2 2 1 0 2 2 1 0 MarR family DUF2250 PF10007.9 gi|332797186|ref|YP_004458686.1| - 0.17 12.0 1.2 9.6 6.4 0.1 2.8 2 1 1 3 3 3 0 Uncharacterized protein conserved in archaea (DUF2250) OFeT_1 PF16955.5 gi|332797187|ref|YP_004458687.1| - 1.5e-104 348.2 21.7 1.6e-104 348.1 21.7 1.0 1 0 0 1 1 1 1 Ferrous iron uptake permease, iron-lead transporter DUF3185 PF11381.8 gi|332797187|ref|YP_004458687.1| - 0.00077 19.4 1.8 0.00084 19.3 0.1 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3185) TMEM252 PF15664.5 gi|332797187|ref|YP_004458687.1| - 0.14 11.9 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 Transmembrane protein 252 family UPF0016 PF01169.19 gi|332797187|ref|YP_004458687.1| - 0.76 10.1 11.3 0.74 10.2 1.1 2.6 2 0 0 2 2 2 0 Uncharacterized protein family UPF0016 DUF3611 PF12263.8 gi|332797188|ref|YP_004458688.1| - 0.0043 17.0 0.3 0.0048 16.8 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3611) JAMP PF05571.12 gi|332797188|ref|YP_004458688.1| - 0.017 14.8 1.0 0.022 14.4 1.0 1.2 1 0 0 1 1 1 0 JNK1/MAPK8-associated membrane protein DUF4149 PF13664.6 gi|332797188|ref|YP_004458688.1| - 0.063 13.6 1.2 0.075 13.4 1.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4149) DUF4282 PF14110.6 gi|332797188|ref|YP_004458688.1| - 0.069 13.9 8.2 0.092 13.5 8.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) IncD PF17628.2 gi|332797188|ref|YP_004458688.1| - 0.096 12.5 2.5 0.13 12.1 2.2 1.3 1 1 0 1 1 1 0 Inclusion membrane protein D DUF2207 PF09972.9 gi|332797188|ref|YP_004458688.1| - 0.11 11.2 0.7 0.13 11.0 0.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) OST3_OST6 PF04756.13 gi|332797188|ref|YP_004458688.1| - 0.16 11.3 3.5 0.2 10.9 3.5 1.0 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family DUF4231 PF14015.6 gi|332797188|ref|YP_004458688.1| - 1.7 9.2 4.6 2 8.9 4.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) DUF4083 PF13314.6 gi|332797188|ref|YP_004458688.1| - 3.4 7.7 6.9 15 5.6 3.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) Sulf_transp PF04143.14 gi|332797189|ref|YP_004458689.1| - 9.9e-23 81.2 20.4 3.1e-22 79.5 20.4 1.8 1 1 0 1 1 1 1 Sulphur transport zf-C2H2_jaz PF12171.8 gi|332797190|ref|YP_004458690.1| - 9.3e-05 22.6 4.0 0.00017 21.8 4.0 1.3 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 gi|332797190|ref|YP_004458690.1| - 0.014 15.7 1.7 0.023 15.1 1.7 1.4 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2_2 PF12756.7 gi|332797190|ref|YP_004458690.1| - 0.055 13.8 0.7 0.082 13.3 0.7 1.2 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) TPP_enzyme_N PF02776.18 gi|332797191|ref|YP_004458691.1| - 2.9e-32 111.6 0.0 4.5e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|332797191|ref|YP_004458691.1| - 2.2e-14 53.5 0.1 1.4e-13 50.9 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|332797191|ref|YP_004458691.1| - 5.7e-14 52.0 0.0 1.1e-13 51.2 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain MFS_1 PF07690.16 gi|332797192|ref|YP_004458692.1| - 2.8e-30 105.5 74.3 6.3e-24 84.5 37.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|332797192|ref|YP_004458692.1| - 1.4e-07 30.4 23.9 1.4e-07 30.4 23.9 2.2 1 1 1 2 2 2 1 MFS/sugar transport protein Jagunal PF07086.12 gi|332797192|ref|YP_004458692.1| - 0.043 13.9 0.9 0.043 13.9 0.9 2.4 2 0 0 2 2 2 0 Jagunal, ER re-organisation during oogenesis EamA PF00892.20 gi|332797193|ref|YP_004458693.1| - 3.5e-33 114.7 46.9 2.2e-16 60.2 19.4 2.3 2 1 0 2 2 2 2 EamA-like transporter family PMT_2 PF13231.6 gi|332797193|ref|YP_004458693.1| - 0.0022 18.2 4.0 0.0022 18.2 4.0 3.4 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Rota_VP2 PF05087.12 gi|332797193|ref|YP_004458693.1| - 0.099 10.8 0.7 0.14 10.2 0.7 1.2 1 0 0 1 1 1 0 Rotavirus VP2 protein Phage_holin_2_4 PF16082.5 gi|332797193|ref|YP_004458693.1| - 0.69 9.7 10.1 0.65 9.8 0.3 3.7 4 0 0 4 4 4 0 Bacteriophage holin family, superfamily II-like TM_helix PF05552.12 gi|332797194|ref|YP_004458694.1| - 0.04 13.9 6.1 0.04 13.9 6.1 2.4 3 0 0 3 3 3 0 Conserved TM helix Peptidase_U4 PF03419.13 gi|332797194|ref|YP_004458694.1| - 0.3 10.3 13.6 0.5 9.6 13.6 1.3 1 1 0 1 1 1 0 Sporulation factor SpoIIGA PRA1 PF03208.19 gi|332797194|ref|YP_004458694.1| - 2 8.0 13.0 3.1 7.4 13.0 1.2 1 0 0 1 1 1 0 PRA1 family protein Caveolin PF01146.17 gi|332797194|ref|YP_004458694.1| - 8.1 6.4 12.2 7.5 6.5 8.9 2.3 1 1 1 2 2 2 0 Caveolin MFS_1 PF07690.16 gi|332797195|ref|YP_004458695.1| - 3e-59 200.7 79.7 8.1e-52 176.3 46.3 2.8 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797195|ref|YP_004458695.1| - 9.1e-12 44.6 7.5 9.1e-12 44.6 7.5 2.9 3 1 0 3 3 3 2 Sugar (and other) transporter OATP PF03137.20 gi|332797195|ref|YP_004458695.1| - 0.00011 20.7 1.5 0.00011 20.7 1.5 4.4 3 2 2 5 5 5 2 Organic Anion Transporter Polypeptide (OATP) family Isochorismatase PF00857.20 gi|332797196|ref|YP_004458696.1| - 1.1e-34 120.2 0.0 1.2e-34 120.0 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family GATase_4 PF13230.6 gi|332797197|ref|YP_004458697.1| - 3.5e-08 32.7 0.0 4e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GATase_6 PF13522.6 gi|332797197|ref|YP_004458697.1| - 4.4e-06 26.9 0.0 6.4e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain zf-CDGSH PF09360.10 gi|332797198|ref|YP_004458698.1| - 3.8e-12 46.2 0.7 1.2e-11 44.6 0.2 1.9 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type MORN_2 PF07661.13 gi|332797198|ref|YP_004458698.1| - 0.13 12.6 0.2 0.79 10.1 0.4 2.0 2 0 0 2 2 2 0 MORN repeat variant HxlR PF01638.17 gi|332797199|ref|YP_004458699.1| - 1.4e-21 76.1 0.2 1.8e-21 75.8 0.2 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_45 PF14947.6 gi|332797199|ref|YP_004458699.1| - 0.0007 19.5 0.2 0.0012 18.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_5 PF01022.20 gi|332797199|ref|YP_004458699.1| - 0.0016 18.3 0.2 0.0023 17.7 0.2 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|332797199|ref|YP_004458699.1| - 0.002 18.6 0.0 0.0029 18.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|332797199|ref|YP_004458699.1| - 0.003 17.7 0.1 0.0043 17.2 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|332797199|ref|YP_004458699.1| - 0.0077 15.8 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|332797199|ref|YP_004458699.1| - 0.012 15.5 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|332797199|ref|YP_004458699.1| - 0.02 14.9 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RepL PF05732.11 gi|332797199|ref|YP_004458699.1| - 0.021 14.3 0.2 0.04 13.4 0.2 1.5 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) MarR PF01047.22 gi|332797199|ref|YP_004458699.1| - 0.039 13.9 0.1 0.053 13.5 0.1 1.3 1 0 0 1 1 1 0 MarR family DUF3116 PF11313.8 gi|332797199|ref|YP_004458699.1| - 0.063 13.1 0.0 0.078 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3116) MazE_antitoxin PF04014.18 gi|332797201|ref|YP_004458701.1| - 9.7e-16 57.3 0.5 1.3e-15 56.9 0.5 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|332797201|ref|YP_004458701.1| - 0.00013 22.4 0.1 0.00019 21.8 0.1 1.3 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin Nha1_C PF08619.10 gi|332797201|ref|YP_004458701.1| - 0.031 13.5 0.2 0.031 13.5 0.2 1.1 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus PIN PF01850.21 gi|332797202|ref|YP_004458702.1| - 2.8e-16 60.1 2.7 3.5e-16 59.8 2.7 1.0 1 0 0 1 1 1 1 PIN domain PIN_2 PF10130.9 gi|332797202|ref|YP_004458702.1| - 0.076 13.2 1.5 0.14 12.4 1.5 1.4 1 1 0 1 1 1 0 PIN domain Poly_export PF02563.16 gi|332797203|ref|YP_004458703.1| - 0.0018 18.4 0.2 0.0027 17.9 0.2 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis/export protein VirArc_Nuclease PF12187.8 gi|332797203|ref|YP_004458703.1| - 0.013 15.1 1.6 0.017 14.7 1.5 1.2 1 1 0 1 1 1 0 Viral/Archaeal nuclease HTH_45 PF14947.6 gi|332797204|ref|YP_004458704.1| - 1.9e-06 27.8 2.3 3e-06 27.1 0.9 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|332797204|ref|YP_004458704.1| - 0.00045 20.2 0.0 0.001 19.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|332797204|ref|YP_004458704.1| - 0.0014 18.5 0.1 0.0096 15.8 0.0 2.2 1 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|332797204|ref|YP_004458704.1| - 0.0032 17.6 0.4 0.0083 16.3 0.4 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|332797204|ref|YP_004458704.1| - 0.0036 17.0 0.1 0.012 15.4 0.0 1.7 1 1 0 2 2 2 1 Domain of unknown function (DUF4423) DUF2067 PF09840.9 gi|332797204|ref|YP_004458704.1| - 0.0039 16.8 0.8 0.033 13.7 0.1 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2067) PadR PF03551.14 gi|332797204|ref|YP_004458704.1| - 0.016 15.2 0.3 0.04 13.9 0.3 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.7 gi|332797204|ref|YP_004458704.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_5 PF01022.20 gi|332797204|ref|YP_004458704.1| - 0.038 13.9 0.1 0.85 9.5 0.0 2.8 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|332797204|ref|YP_004458704.1| - 0.041 14.4 0.1 0.11 13.0 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Tn916-Xis PF09035.10 gi|332797204|ref|YP_004458704.1| - 0.049 13.8 0.1 0.082 13.1 0.1 1.4 1 0 0 1 1 1 0 Excisionase from transposon Tn916 HTH_IclR PF09339.10 gi|332797204|ref|YP_004458704.1| - 0.097 12.5 0.0 0.25 11.2 0.0 1.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|332797204|ref|YP_004458704.1| - 0.23 11.0 5.6 0.41 10.3 0.0 3.2 4 0 0 4 4 4 0 Winged helix-turn-helix DNA-binding SNCAIP_SNCA_bd PF16700.5 gi|332797205|ref|YP_004458705.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Synphilin-1 alpha-Synuclein-binding domain PIN PF01850.21 gi|332797206|ref|YP_004458706.1| - 8.8e-13 48.8 1.7 1.1e-12 48.6 1.7 1.1 1 0 0 1 1 1 1 PIN domain HEPN PF05168.14 gi|332797208|ref|YP_004458708.1| - 3.2e-21 75.6 1.3 4e-21 75.3 1.3 1.1 1 0 0 1 1 1 1 HEPN domain DUF3201 PF11447.8 gi|332797208|ref|YP_004458708.1| - 0.049 13.2 0.6 0.7 9.4 0.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3201) tRNA-synt_His PF13393.6 gi|332797208|ref|YP_004458708.1| - 0.14 11.4 0.1 0.18 11.1 0.1 1.1 1 0 0 1 1 1 0 Histidyl-tRNA synthetase NTP_transf_2 PF01909.23 gi|332797209|ref|YP_004458709.1| - 8.4e-09 35.6 0.1 1.4e-08 34.9 0.1 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797209|ref|YP_004458709.1| - 3.9e-07 30.1 0.1 7.1e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RE_HpaII PF09561.10 gi|332797209|ref|YP_004458709.1| - 0.00083 18.8 0.0 0.001 18.5 0.0 1.1 1 0 0 1 1 1 1 HpaII restriction endonuclease Deltameth_res PF16020.5 gi|332797209|ref|YP_004458709.1| - 0.015 15.1 0.0 2.1 8.3 0.0 2.5 3 0 0 3 3 3 0 Deltamethrin resistance HEPN PF05168.14 gi|332797210|ref|YP_004458710.1| - 1e-26 93.4 0.3 1.1e-26 93.2 0.3 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|332797211|ref|YP_004458711.1| - 2.3e-08 34.2 0.0 3.1e-08 33.8 0.0 1.3 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797211|ref|YP_004458711.1| - 0.00025 21.1 0.2 0.00031 20.8 0.1 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|332797211|ref|YP_004458711.1| - 0.004 17.3 0.0 0.0045 17.2 0.0 1.1 1 0 0 1 1 1 1 DNA polymerase beta palm DUF294 PF03445.13 gi|332797211|ref|YP_004458711.1| - 0.14 12.0 0.0 0.15 11.9 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Lys_export PF03956.13 gi|332797212|ref|YP_004458712.1| - 4.5e-46 156.8 16.1 4.5e-46 156.8 16.1 1.9 2 0 0 2 2 2 1 Lysine exporter LysO Sbt_1 PF05982.12 gi|332797212|ref|YP_004458712.1| - 0.00022 20.6 14.2 0.01 15.1 2.9 2.3 1 1 1 2 2 2 2 Na+-dependent bicarbonate transporter superfamily Asp-Al_Ex PF06826.12 gi|332797212|ref|YP_004458712.1| - 0.0025 17.7 6.1 0.0025 17.7 6.1 2.4 2 1 1 3 3 3 1 Predicted Permease Membrane Region AbrB PF05145.12 gi|332797212|ref|YP_004458712.1| - 0.0031 16.5 2.7 0.0031 16.5 2.7 2.5 1 1 0 2 2 2 1 Transition state regulatory protein AbrB DUF2512 PF10710.9 gi|332797212|ref|YP_004458712.1| - 0.35 10.5 9.4 0.11 12.1 1.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2512) DUF973 PF06157.11 gi|332797213|ref|YP_004458713.1| - 4.2e-72 242.8 57.7 6.3e-72 242.3 57.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF973) DUF996 PF06195.13 gi|332797213|ref|YP_004458713.1| - 5e-05 23.6 43.2 0.0068 16.7 17.3 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF996) Na_H_Exchanger PF00999.21 gi|332797214|ref|YP_004458714.1| - 1.7e-22 79.7 50.7 1.7e-22 79.7 50.7 2.1 2 0 0 2 2 2 1 Sodium/hydrogen exchanger family Invasin_D3 PF09134.10 gi|332797215|ref|YP_004458715.1| - 0.00086 19.6 10.9 0.44 10.9 0.1 3.5 2 1 0 3 3 3 2 Invasin, domain 3 DsbC_N PF10411.9 gi|332797215|ref|YP_004458715.1| - 0.34 10.4 3.3 7.8 6.0 0.1 3.9 3 1 0 3 3 3 0 Disulfide bond isomerase protein N-terminus sCache_3_3 PF17202.4 gi|332797215|ref|YP_004458715.1| - 0.41 11.1 6.8 7.4 7.0 0.4 3.1 3 0 0 3 3 3 0 Single cache domain 3 DUF3707 PF12499.8 gi|332797215|ref|YP_004458715.1| - 0.52 10.9 5.9 6.1 7.4 0.1 3.2 1 1 2 3 3 3 0 Pherophorin DUF4006 PF13179.6 gi|332797215|ref|YP_004458715.1| - 1.1 9.2 3.2 2.7 8.0 3.2 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF4006) PAP2 PF01569.21 gi|332797216|ref|YP_004458716.1| - 4.4e-05 23.3 11.3 4.4e-05 23.3 11.3 2.6 2 1 1 3 3 3 1 PAP2 superfamily DUF3561 PF12084.8 gi|332797217|ref|YP_004458717.1| - 0.022 14.8 8.0 0.21 11.6 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3561) DUF543 PF04418.12 gi|332797217|ref|YP_004458717.1| - 0.25 11.3 0.0 0.25 11.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF543) Phosphoesterase PF04185.14 gi|332797218|ref|YP_004458718.1| - 6.9e-69 232.7 3.0 1.3e-68 231.8 3.0 1.4 1 1 0 1 1 1 1 Phosphoesterase family CbiQ PF02361.16 gi|332797219|ref|YP_004458719.1| - 1.9e-11 44.0 15.4 4.3e-11 42.9 15.4 1.6 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|332797220|ref|YP_004458720.1| - 1.2e-51 174.8 0.3 9.6e-25 87.7 0.1 2.2 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|332797220|ref|YP_004458720.1| - 5e-16 58.8 6.1 2.6e-08 33.6 0.3 3.3 2 2 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|332797220|ref|YP_004458720.1| - 2e-15 57.4 9.1 0.001 19.0 0.1 4.2 2 2 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|332797220|ref|YP_004458720.1| - 3e-13 49.3 1.0 7.9e-06 25.5 0.1 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|332797220|ref|YP_004458720.1| - 2.7e-11 43.6 0.7 0.00024 21.0 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_23 PF13476.6 gi|332797220|ref|YP_004458720.1| - 2.6e-10 41.2 0.5 0.0012 19.4 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|332797220|ref|YP_004458720.1| - 6.2e-09 36.5 0.0 0.00089 19.7 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_15 PF13175.6 gi|332797220|ref|YP_004458720.1| - 1e-08 35.3 1.4 0.00016 21.5 0.2 2.2 2 0 0 2 2 2 2 AAA ATPase domain MMR_HSR1 PF01926.23 gi|332797220|ref|YP_004458720.1| - 4.6e-08 33.1 0.4 0.0049 16.9 0.0 2.7 2 0 0 2 2 2 2 50S ribosome-binding GTPase AAA_22 PF13401.6 gi|332797220|ref|YP_004458720.1| - 6.3e-07 29.7 0.2 0.059 13.6 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|332797220|ref|YP_004458720.1| - 2.9e-06 27.8 0.8 0.75 10.3 0.0 3.6 3 0 0 3 3 3 2 AAA domain IstB_IS21 PF01695.17 gi|332797220|ref|YP_004458720.1| - 3.8e-06 26.7 0.1 0.46 10.2 0.0 3.2 3 0 0 3 3 3 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|332797220|ref|YP_004458720.1| - 4.2e-06 26.3 0.2 0.013 14.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|332797220|ref|YP_004458720.1| - 6.1e-06 25.3 0.8 0.068 11.9 0.1 3.6 4 0 0 4 4 4 2 Predicted ATPase of the ABC class NACHT PF05729.12 gi|332797220|ref|YP_004458720.1| - 2.2e-05 24.5 1.4 0.14 12.0 0.1 2.6 2 0 0 2 2 2 2 NACHT domain DUF815 PF05673.13 gi|332797220|ref|YP_004458720.1| - 3.1e-05 23.3 0.2 0.22 10.6 0.1 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_30 PF13604.6 gi|332797220|ref|YP_004458720.1| - 3.8e-05 23.5 0.2 0.14 11.9 0.2 2.4 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|332797220|ref|YP_004458720.1| - 4.1e-05 23.2 0.2 0.2 11.1 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|332797220|ref|YP_004458720.1| - 5.2e-05 23.6 0.2 0.22 12.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA PF00004.29 gi|332797220|ref|YP_004458720.1| - 6.6e-05 23.3 0.1 0.047 14.1 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|332797220|ref|YP_004458720.1| - 7.7e-05 22.2 0.8 0.051 12.9 0.0 3.1 3 0 0 3 3 3 1 FtsK/SpoIIIE family NB-ARC PF00931.22 gi|332797220|ref|YP_004458720.1| - 0.00016 20.9 0.1 0.39 9.9 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain Dynamin_N PF00350.23 gi|332797220|ref|YP_004458720.1| - 0.0002 21.4 2.5 0.3 11.1 0.3 2.8 3 0 0 3 3 2 2 Dynamin family SbcCD_C PF13558.6 gi|332797220|ref|YP_004458720.1| - 0.00048 20.3 0.0 0.017 15.4 0.0 2.8 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit Zeta_toxin PF06414.12 gi|332797220|ref|YP_004458720.1| - 0.0006 19.2 0.3 0.81 8.9 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_5 PF07728.14 gi|332797220|ref|YP_004458720.1| - 0.00061 19.8 0.7 0.83 9.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) TsaE PF02367.17 gi|332797220|ref|YP_004458720.1| - 0.00065 19.7 0.2 0.11 12.6 0.2 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|332797220|ref|YP_004458720.1| - 0.00066 19.4 0.1 0.29 10.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|332797220|ref|YP_004458720.1| - 0.00075 19.3 0.4 0.4 10.4 0.0 2.6 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_27 PF13514.6 gi|332797220|ref|YP_004458720.1| - 0.00096 18.8 0.2 0.17 11.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|332797220|ref|YP_004458720.1| - 0.00098 19.3 2.4 0.42 10.8 0.3 2.8 2 2 0 2 2 2 1 AAA domain Roc PF08477.13 gi|332797220|ref|YP_004458720.1| - 0.0011 19.2 0.4 2.2 8.5 0.1 2.6 2 0 0 2 2 2 2 Ras of Complex, Roc, domain of DAPkinase T2SSE PF00437.20 gi|332797220|ref|YP_004458720.1| - 0.0011 18.0 1.3 0.3 10.1 0.0 2.5 3 0 0 3 3 2 1 Type II/IV secretion system protein Septin PF00735.18 gi|332797220|ref|YP_004458720.1| - 0.0013 18.1 0.2 0.04 13.2 0.0 2.2 2 0 0 2 2 2 1 Septin NTPase_1 PF03266.15 gi|332797220|ref|YP_004458720.1| - 0.0013 18.7 1.0 2 8.3 0.1 2.8 3 0 0 3 3 2 2 NTPase AAA_14 PF13173.6 gi|332797220|ref|YP_004458720.1| - 0.0013 18.7 0.0 1.9 8.5 0.0 2.9 3 0 0 3 3 2 1 AAA domain Ploopntkinase3 PF18751.1 gi|332797220|ref|YP_004458720.1| - 0.0014 18.5 0.3 0.62 10.0 0.0 2.6 2 0 0 2 2 2 1 P-loop Nucleotide Kinase3 G-alpha PF00503.20 gi|332797220|ref|YP_004458720.1| - 0.0018 17.5 0.0 0.39 9.8 0.0 2.3 2 0 0 2 2 2 1 G-protein alpha subunit AAA_25 PF13481.6 gi|332797220|ref|YP_004458720.1| - 0.0018 17.9 0.1 2.6 7.6 0.0 2.5 2 0 0 2 2 2 2 AAA domain MCM PF00493.23 gi|332797220|ref|YP_004458720.1| - 0.0019 17.3 0.3 1 8.4 0.1 2.3 2 0 0 2 2 2 1 MCM P-loop domain FeoB_N PF02421.18 gi|332797220|ref|YP_004458720.1| - 0.0024 17.4 1.0 1.5 8.3 0.0 2.3 2 0 0 2 2 2 1 Ferrous iron transport protein B cobW PF02492.19 gi|332797220|ref|YP_004458720.1| - 0.0029 17.2 0.6 1.8 8.1 0.1 2.5 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DLIC PF05783.11 gi|332797220|ref|YP_004458720.1| - 0.0035 16.2 1.2 0.56 9.0 0.0 2.4 2 0 0 2 2 2 1 Dynein light intermediate chain (DLIC) ATP-synt_ab PF00006.25 gi|332797220|ref|YP_004458720.1| - 0.0036 17.0 0.2 0.54 9.9 0.1 2.4 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|332797220|ref|YP_004458720.1| - 0.0044 16.8 0.3 0.98 9.2 0.1 2.8 3 0 0 3 3 3 1 Conserved hypothetical ATP binding protein PIF1 PF05970.14 gi|332797220|ref|YP_004458720.1| - 0.0046 16.2 0.1 3.5 6.7 0.1 3.1 3 0 0 3 3 3 0 PIF1-like helicase AIG1 PF04548.16 gi|332797220|ref|YP_004458720.1| - 0.0054 16.1 0.8 0.35 10.1 0.4 2.4 2 0 0 2 2 2 1 AIG1 family AAA_28 PF13521.6 gi|332797220|ref|YP_004458720.1| - 0.0064 16.8 0.0 5.4 7.2 0.0 2.5 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|332797220|ref|YP_004458720.1| - 0.0071 15.7 0.1 1 8.7 0.0 2.7 3 0 0 3 3 2 1 KaiC Sigma54_activat PF00158.26 gi|332797220|ref|YP_004458720.1| - 0.0074 16.0 0.4 1 9.1 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain MobB PF03205.14 gi|332797220|ref|YP_004458720.1| - 0.0077 16.1 0.7 4.6 7.2 0.2 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Viral_helicase1 PF01443.18 gi|332797220|ref|YP_004458720.1| - 0.0079 16.0 0.0 3.6 7.2 0.0 2.5 3 0 0 3 3 2 0 Viral (Superfamily 1) RNA helicase APS_kinase PF01583.20 gi|332797220|ref|YP_004458720.1| - 0.011 15.6 0.9 4.2 7.3 0.0 2.7 3 0 0 3 3 2 0 Adenylylsulphate kinase DUF87 PF01935.17 gi|332797220|ref|YP_004458720.1| - 0.012 15.7 1.9 0.63 10.1 0.2 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain IIGP PF05049.13 gi|332797220|ref|YP_004458720.1| - 0.013 14.6 0.2 0.16 11.0 0.0 2.2 2 0 0 2 2 2 0 Interferon-inducible GTPase (IIGP) PRK PF00485.18 gi|332797220|ref|YP_004458720.1| - 0.018 14.8 0.1 6.8 6.4 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family ATPase_2 PF01637.18 gi|332797220|ref|YP_004458720.1| - 0.022 14.7 0.1 5.8 6.8 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_19 PF13245.6 gi|332797220|ref|YP_004458720.1| - 0.022 15.1 0.4 4.6 7.6 0.1 2.9 3 0 0 3 3 3 0 AAA domain AAA_13 PF13166.6 gi|332797220|ref|YP_004458720.1| - 0.023 13.4 0.0 8.8 4.8 0.0 2.8 3 0 0 3 3 3 0 AAA domain KAP_NTPase PF07693.14 gi|332797220|ref|YP_004458720.1| - 0.025 13.8 0.0 3.4 6.8 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain PhoH PF02562.16 gi|332797220|ref|YP_004458720.1| - 0.028 13.9 0.4 0.94 8.9 0.2 2.3 2 0 0 2 2 2 0 PhoH-like protein SRP54 PF00448.22 gi|332797220|ref|YP_004458720.1| - 0.038 13.6 0.1 1.5 8.4 0.0 2.3 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TniB PF05621.11 gi|332797220|ref|YP_004458720.1| - 0.039 13.4 1.2 2.2 7.6 0.0 3.4 4 0 0 4 4 4 0 Bacterial TniB protein MeaB PF03308.16 gi|332797220|ref|YP_004458720.1| - 0.054 12.5 0.3 3.5 6.5 0.1 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB MukB PF04310.12 gi|332797220|ref|YP_004458720.1| - 0.081 12.7 0.1 1.3 8.8 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal CPT PF07931.12 gi|332797220|ref|YP_004458720.1| - 0.083 12.7 2.7 7 6.5 0.2 2.7 3 0 0 3 3 2 0 Chloramphenicol phosphotransferase-like protein Gtr1_RagA PF04670.12 gi|332797220|ref|YP_004458720.1| - 0.22 10.8 1.0 12 5.2 0.1 2.3 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Pyr_redox_2 PF07992.14 gi|332797222|ref|YP_004458722.1| - 9.7e-45 153.0 2.9 2.8e-44 151.5 2.9 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797222|ref|YP_004458722.1| - 4.5e-20 72.0 2.3 2.7e-18 66.3 0.5 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332797222|ref|YP_004458722.1| - 1.1e-09 37.9 0.3 2.5e-09 36.9 0.2 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|332797222|ref|YP_004458722.1| - 9.9e-07 28.3 0.4 0.0016 17.8 0.1 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain PALP PF00291.25 gi|332797222|ref|YP_004458722.1| - 0.00086 18.8 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme 2-Hacid_dh_C PF02826.19 gi|332797222|ref|YP_004458722.1| - 0.0024 17.3 0.2 0.0058 16.0 0.1 1.6 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GIDA PF01134.22 gi|332797222|ref|YP_004458722.1| - 0.0038 16.4 0.8 0.04 13.0 0.0 2.6 4 0 0 4 4 4 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|332797222|ref|YP_004458722.1| - 0.011 16.0 0.5 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|332797222|ref|YP_004458722.1| - 0.012 15.2 7.4 0.58 9.7 0.0 3.6 3 1 1 4 4 4 0 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|332797222|ref|YP_004458722.1| - 0.017 13.9 6.5 0.092 11.4 0.2 3.6 3 1 2 5 5 5 0 HI0933-like protein TrkA_N PF02254.18 gi|332797222|ref|YP_004458722.1| - 0.017 15.4 0.2 0.1 12.8 0.1 2.4 2 1 0 2 2 2 0 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|332797222|ref|YP_004458722.1| - 0.019 14.5 1.3 0.55 9.8 0.1 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.19 gi|332797222|ref|YP_004458722.1| - 0.033 13.4 0.4 0.085 12.1 0.1 1.9 2 0 0 2 2 2 0 FAD binding domain NAD_binding_7 PF13241.6 gi|332797222|ref|YP_004458722.1| - 0.049 14.1 1.6 0.17 12.4 0.0 2.5 3 0 0 3 3 2 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|332797222|ref|YP_004458722.1| - 0.056 13.3 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|332797222|ref|YP_004458722.1| - 0.063 13.1 0.1 0.17 11.7 0.1 1.7 1 1 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Limkain-b1 PF11608.8 gi|332797222|ref|YP_004458722.1| - 0.064 13.3 0.0 0.73 9.9 0.0 2.3 2 0 0 2 2 2 0 Limkain b1 Oxidored_nitro PF00148.19 gi|332797222|ref|YP_004458722.1| - 0.068 11.9 0.0 0.097 11.4 0.0 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase NAD_Gly3P_dh_N PF01210.23 gi|332797222|ref|YP_004458722.1| - 0.094 12.7 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lycopene_cycl PF05834.12 gi|332797222|ref|YP_004458722.1| - 0.13 11.3 1.1 1.8 7.5 0.3 2.6 2 1 1 3 3 3 0 Lycopene cyclase protein XdhC_C PF13478.6 gi|332797222|ref|YP_004458722.1| - 0.13 12.7 0.0 0.27 11.8 0.0 1.6 1 0 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|332797222|ref|YP_004458722.1| - 0.21 12.2 0.1 0.21 12.2 0.1 2.6 2 1 1 3 3 2 0 NADP oxidoreductase coenzyme F420-dependent FAD_oxidored PF12831.7 gi|332797222|ref|YP_004458722.1| - 0.23 10.7 0.1 0.23 10.7 0.1 2.4 2 1 1 3 3 3 0 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332797222|ref|YP_004458722.1| - 2.5 7.1 4.3 13 4.7 0.2 2.4 2 1 0 2 2 2 0 FAD binding domain HEPN PF05168.14 gi|332797223|ref|YP_004458723.1| - 3.7e-13 49.6 0.3 4.1e-13 49.5 0.3 1.1 1 0 0 1 1 1 1 HEPN domain GTP_EFTU PF00009.27 gi|332797225|ref|YP_004458725.1| - 2e-06 27.5 4.2 1.3e-05 24.8 4.0 2.0 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU PF00009.27 gi|332797226|ref|YP_004458726.1| - 2.1e-10 40.5 0.7 3.5e-10 39.8 0.7 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.23 gi|332797226|ref|YP_004458726.1| - 0.0014 18.7 0.6 0.012 15.7 0.6 2.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase Mrr_N PF14338.6 gi|332797226|ref|YP_004458726.1| - 0.067 13.3 0.1 0.24 11.6 0.1 2.0 2 0 0 2 2 2 0 Mrr N-terminal domain NTP_transf_2 PF01909.23 gi|332797227|ref|YP_004458727.1| - 3.6e-12 46.4 1.4 4.9e-12 46.0 1.4 1.4 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797227|ref|YP_004458727.1| - 1.8e-07 31.1 0.6 2.6e-07 30.6 0.5 1.3 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|332797227|ref|YP_004458727.1| - 0.015 15.1 0.1 0.034 14.0 0.1 1.7 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Ribosomal_L7Ae PF01248.26 gi|332797227|ref|YP_004458727.1| - 0.017 14.8 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JmjN PF02375.17 gi|332797227|ref|YP_004458727.1| - 0.088 12.8 2.2 0.88 9.6 0.6 2.3 2 0 0 2 2 2 0 jmjN domain Sulfolobus_pRN PF05584.11 gi|332797228|ref|YP_004458728.1| - 2.3e-13 50.0 3.2 2.6e-13 49.8 3.2 1.0 1 0 0 1 1 1 1 Sulfolobus plasmid regulatory protein TrmB PF01978.19 gi|332797228|ref|YP_004458728.1| - 0.00054 19.8 0.5 0.00085 19.2 0.5 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|332797228|ref|YP_004458728.1| - 0.0051 17.1 0.1 0.0068 16.7 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|332797228|ref|YP_004458728.1| - 0.0074 16.0 0.1 0.012 15.3 0.1 1.3 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain AbiEi_4 PF13338.6 gi|332797228|ref|YP_004458728.1| - 0.0075 16.4 0.0 0.011 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin HTH_11 PF08279.12 gi|332797228|ref|YP_004458728.1| - 0.0098 15.8 0.5 0.015 15.2 0.5 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|332797228|ref|YP_004458728.1| - 0.013 15.6 0.0 0.018 15.1 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|332797228|ref|YP_004458728.1| - 0.015 15.4 0.2 0.023 14.8 0.2 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HxlR PF01638.17 gi|332797228|ref|YP_004458728.1| - 0.021 14.7 0.7 0.024 14.5 0.7 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix TFIIE_alpha PF02002.17 gi|332797228|ref|YP_004458728.1| - 0.025 14.4 0.3 0.036 13.9 0.3 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.20 gi|332797228|ref|YP_004458728.1| - 0.026 14.4 1.3 0.031 14.1 0.4 1.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|332797228|ref|YP_004458728.1| - 0.026 14.1 2.3 0.026 14.1 1.4 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_39 PF14090.6 gi|332797228|ref|YP_004458728.1| - 0.055 13.2 0.1 0.08 12.7 0.1 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|332797228|ref|YP_004458728.1| - 0.066 13.1 0.0 0.096 12.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|332797228|ref|YP_004458728.1| - 0.08 12.9 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_Mga PF08280.11 gi|332797228|ref|YP_004458728.1| - 0.11 12.6 2.1 0.15 12.1 2.1 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MAP65_ASE1 PF03999.12 gi|332797229|ref|YP_004458729.1| - 0.0039 15.9 2.0 0.0052 15.6 2.0 1.1 1 0 0 1 1 1 1 Microtubule associated protein (MAP65/ASE1 family) Peptidase_S49 PF01343.18 gi|332797229|ref|YP_004458729.1| - 0.0085 16.1 0.1 0.014 15.4 0.1 1.5 1 0 0 1 1 1 1 Peptidase family S49 TPD52 PF04201.15 gi|332797229|ref|YP_004458729.1| - 0.012 15.3 3.6 1.1 8.9 1.0 2.2 1 1 1 2 2 2 0 Tumour protein D52 family Phe_tRNA-synt_N PF02912.18 gi|332797229|ref|YP_004458729.1| - 0.013 15.4 0.7 0.15 12.0 0.0 2.6 2 1 1 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain HNOB PF07700.15 gi|332797229|ref|YP_004458729.1| - 0.02 14.9 0.1 3.3 7.7 0.0 2.1 1 1 1 2 2 2 0 Haem-NO-binding RNA_Me_trans PF04252.13 gi|332797229|ref|YP_004458729.1| - 0.024 14.2 0.1 0.031 13.9 0.1 1.2 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase PhaP_Bmeg PF09602.10 gi|332797229|ref|YP_004458729.1| - 0.035 14.0 2.9 0.087 12.7 2.5 1.8 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Bac_DNA_binding PF00216.21 gi|332797229|ref|YP_004458729.1| - 0.045 13.9 0.0 0.19 11.9 0.0 1.9 2 1 0 2 2 2 0 Bacterial DNA-binding protein HopJ PF08888.11 gi|332797229|ref|YP_004458729.1| - 0.085 13.1 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 HopJ type III effector protein DUF4083 PF13314.6 gi|332797229|ref|YP_004458729.1| - 0.1 12.6 0.5 0.2 11.6 0.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Evr1_Alr PF04777.13 gi|332797229|ref|YP_004458729.1| - 0.14 12.6 0.5 0.31 11.5 0.2 1.8 2 1 0 2 2 2 0 Erv1 / Alr family DUF1542 PF07564.11 gi|332797229|ref|YP_004458729.1| - 0.17 12.0 1.6 0.57 10.3 0.5 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) DUF5388 PF17363.2 gi|332797229|ref|YP_004458729.1| - 0.22 11.7 4.4 1.4 9.2 0.1 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5388) ATPase PF06745.13 gi|332797230|ref|YP_004458730.1| - 0.0054 16.1 1.4 0.0054 16.1 1.4 1.1 1 0 0 1 1 1 1 KaiC PSK_trans_fac PF07704.11 gi|332797230|ref|YP_004458730.1| - 0.019 15.7 0.2 0.024 15.4 0.2 1.1 1 0 0 1 1 1 0 Rv0623-like transcription factor Arg_decarbox_C PF17944.1 gi|332797230|ref|YP_004458730.1| - 0.056 14.0 0.7 1.3 9.7 0.3 2.2 1 1 1 2 2 2 0 Arginine decarboxylase C-terminal helical extension Haem_bd PF14376.6 gi|332797230|ref|YP_004458730.1| - 0.061 13.3 0.1 0.065 13.2 0.1 1.1 1 0 0 1 1 1 0 Haem-binding domain AAA_15 PF13175.6 gi|332797230|ref|YP_004458730.1| - 0.063 13.0 6.6 0.065 12.9 6.6 1.0 1 0 0 1 1 1 0 AAA ATPase domain YqzH PF14164.6 gi|332797230|ref|YP_004458730.1| - 0.085 12.9 2.8 0.89 9.7 0.9 2.2 1 1 1 2 2 2 0 YqzH-like protein Rad50_zn_hook PF04423.14 gi|332797230|ref|YP_004458730.1| - 0.11 12.3 10.4 0.45 10.4 0.5 2.5 3 0 0 3 3 3 0 Rad50 zinc hook motif DUF1542 PF07564.11 gi|332797230|ref|YP_004458730.1| - 0.24 11.5 5.6 0.56 10.4 1.5 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1542) SAM_Exu PF18609.1 gi|332797230|ref|YP_004458730.1| - 1.4 9.0 5.4 1.3 9.2 3.7 1.7 1 1 1 2 2 2 0 Exuperantia SAM-like domain Cnd1 PF12717.7 gi|332797231|ref|YP_004458731.1| - 0.046 13.8 0.7 0.35 10.9 0.1 2.0 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 DUF3472 PF11958.8 gi|332797233|ref|YP_004458733.1| - 0.11 13.0 0.4 0.19 12.2 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3472) Phage_int_SAM_3 PF14659.6 gi|332797234|ref|YP_004458734.1| - 0.013 15.8 1.4 0.013 15.8 1.4 2.3 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain GNAT_acetyltran PF12746.7 gi|332797234|ref|YP_004458734.1| - 0.27 10.8 3.6 0.31 10.6 2.9 1.4 1 1 0 1 1 1 0 GNAT acetyltransferase ParBc PF02195.18 gi|332797235|ref|YP_004458735.1| - 1.1e-09 38.4 0.2 1.1e-08 35.2 0.1 2.6 2 0 0 2 2 2 1 ParB-like nuclease domain DUF3235 PF11574.8 gi|332797235|ref|YP_004458735.1| - 0.0011 19.8 0.3 0.42 11.5 0.0 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF3235) Terminase_5 PF06056.12 gi|332797235|ref|YP_004458735.1| - 0.011 15.6 0.0 0.031 14.2 0.0 1.7 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) CAP59_mtransfer PF11735.8 gi|332797235|ref|YP_004458735.1| - 0.012 15.3 1.3 0.023 14.4 1.3 1.4 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 GntR PF00392.21 gi|332797235|ref|YP_004458735.1| - 0.021 14.5 1.4 0.57 9.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Phage_integrase PF00589.22 gi|332797236|ref|YP_004458736.1| - 2.8e-11 43.5 0.2 2.1e-10 40.7 0.1 2.4 2 1 0 2 2 2 1 Phage integrase family Phage_integr_3 PF16795.5 gi|332797236|ref|YP_004458736.1| - 1.5e-10 41.3 5.2 5.5e-05 23.1 0.2 3.5 3 1 0 3 3 3 3 Archaeal phage integrase Phage_int_SAM_4 PF13495.6 gi|332797236|ref|YP_004458736.1| - 0.0027 18.2 1.9 0.0072 16.8 0.2 2.7 3 1 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain TrmB PF01978.19 gi|332797236|ref|YP_004458736.1| - 0.055 13.4 1.4 8.9 6.3 0.1 4.1 4 1 0 4 4 4 0 Sugar-specific transcriptional regulator TrmB PNP_UDP_1 PF01048.20 gi|332797238|ref|YP_004458738.1| - 4.2e-28 98.2 0.0 4.6e-28 98.1 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily TauE PF01925.19 gi|332797239|ref|YP_004458739.1| - 1.5e-39 136.0 35.8 2e-39 135.7 35.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF3093 PF11292.8 gi|332797240|ref|YP_004458740.1| - 4.4e-06 27.0 0.7 5.8e-06 26.6 0.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3093) DUF2160 PF09928.9 gi|332797240|ref|YP_004458740.1| - 0.023 15.0 2.1 0.033 14.5 2.1 1.4 1 0 0 1 1 1 0 Predicted small integral membrane protein (DUF2160) AA_permease PF00324.21 gi|332797241|ref|YP_004458741.1| - 0.043 12.4 3.1 0.049 12.2 3.1 1.0 1 0 0 1 1 1 0 Amino acid permease Inhibitor_I71 PF12628.7 gi|332797241|ref|YP_004458741.1| - 0.08 12.8 0.0 0.091 12.6 0.0 1.1 1 0 0 1 1 1 0 Falstatin, cysteine peptidase inhibitor Radical_SAM PF04055.21 gi|332797245|ref|YP_004458745.1| - 2e-17 64.1 0.0 7.7e-17 62.2 0.0 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|332797245|ref|YP_004458745.1| - 6.7e-07 29.7 0.0 1.3e-06 28.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332797245|ref|YP_004458745.1| - 0.00011 22.3 0.0 0.00023 21.3 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|332797245|ref|YP_004458745.1| - 0.00055 20.4 0.0 0.0013 19.2 0.0 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Radical_SAM PF04055.21 gi|332797246|ref|YP_004458746.1| - 9.4e-26 91.2 0.0 3.7e-25 89.2 0.0 1.9 1 1 1 2 2 2 1 Radical SAM superfamily SPASM PF13186.6 gi|332797246|ref|YP_004458746.1| - 6.8e-08 32.9 0.3 1.7e-07 31.6 0.3 1.6 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_12 PF13353.6 gi|332797246|ref|YP_004458746.1| - 4.6e-06 27.0 0.0 1.1e-05 25.7 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332797246|ref|YP_004458746.1| - 7.2e-06 26.1 0.0 2.7e-05 24.3 0.0 1.9 3 0 0 3 3 3 1 4Fe-4S single cluster domain Cas_Cas4 PF01930.17 gi|332797246|ref|YP_004458746.1| - 0.043 13.9 0.1 0.077 13.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF83 BtpA PF03437.15 gi|332797247|ref|YP_004458747.1| - 9.6e-79 264.4 0.0 1.1e-78 264.1 0.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|332797247|ref|YP_004458747.1| - 3.8e-05 22.7 0.1 0.00037 19.4 0.0 2.1 2 0 0 2 2 2 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|332797247|ref|YP_004458747.1| - 0.085 12.3 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Histidine biosynthesis protein OrfB_Zn_ribbon PF07282.11 gi|332797248|ref|YP_004458748.1| - 4.4e-19 68.2 0.8 1.3e-18 66.7 0.2 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797248|ref|YP_004458748.1| - 3.2e-05 24.1 0.9 6.3e-05 23.2 0.1 1.8 3 0 0 3 3 3 1 Probable transposase zf-RING_4 PF14570.6 gi|332797248|ref|YP_004458748.1| - 0.093 12.5 0.8 0.18 11.6 0.8 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Fer4_10 PF13237.6 gi|332797249|ref|YP_004458749.1| - 2.6e-07 30.6 6.3 3.4e-07 30.3 6.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332797249|ref|YP_004458749.1| - 4e-07 29.7 9.4 2e-05 24.4 3.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|332797249|ref|YP_004458749.1| - 4.8e-06 26.6 4.3 6.4e-06 26.2 4.3 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332797249|ref|YP_004458749.1| - 6.7e-06 26.0 9.9 0.00056 19.9 2.4 2.9 2 1 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332797249|ref|YP_004458749.1| - 1.9e-05 25.1 5.8 0.00021 21.8 6.0 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|332797249|ref|YP_004458749.1| - 5.6e-05 23.2 3.7 0.00026 21.1 3.7 1.8 1 1 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_21 PF14697.6 gi|332797249|ref|YP_004458749.1| - 0.00015 21.8 6.2 0.00027 21.0 6.1 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|332797249|ref|YP_004458749.1| - 0.0038 17.3 1.0 0.0046 17.1 1.0 1.1 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332797249|ref|YP_004458749.1| - 0.0048 17.3 1.8 0.95 10.0 0.4 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|332797249|ref|YP_004458749.1| - 0.017 14.9 6.9 0.056 13.2 2.2 2.1 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|332797249|ref|YP_004458749.1| - 0.036 15.0 4.2 4.2 8.4 0.0 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4 PF00037.27 gi|332797249|ref|YP_004458749.1| - 0.042 13.7 15.2 4.1 7.4 0.1 4.1 4 0 0 4 4 4 0 4Fe-4S binding domain Sgf11 PF08209.11 gi|332797249|ref|YP_004458749.1| - 0.11 12.1 0.1 0.11 12.1 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Fer4_4 PF12800.7 gi|332797249|ref|YP_004458749.1| - 0.17 12.5 11.3 0.67 10.6 2.3 2.7 2 1 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|332797249|ref|YP_004458749.1| - 0.5 11.4 11.9 3.6 8.8 3.9 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ribosomal_S27 PF01599.19 gi|332797249|ref|YP_004458749.1| - 4.1 7.6 8.4 2.8e+02 1.8 8.6 2.8 1 1 0 1 1 1 0 Ribosomal protein S27a FAD_oxidored PF12831.7 gi|332797250|ref|YP_004458750.1| - 8.5e-14 51.7 0.0 1.4e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|332797250|ref|YP_004458750.1| - 1.3e-12 48.0 0.0 4.4e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332797250|ref|YP_004458750.1| - 3.3e-09 36.3 0.2 5.1e-09 35.7 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|332797250|ref|YP_004458750.1| - 2.7e-08 33.4 0.0 3.8e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|332797250|ref|YP_004458750.1| - 3.2e-08 32.7 0.0 5.1e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|332797250|ref|YP_004458750.1| - 9e-06 25.1 0.9 0.02 14.2 1.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|332797250|ref|YP_004458750.1| - 2.1e-05 23.9 0.4 5.5e-05 22.5 0.4 1.6 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.6 gi|332797250|ref|YP_004458750.1| - 6.8e-05 23.0 2.5 0.00028 21.1 1.3 2.5 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|332797250|ref|YP_004458750.1| - 0.00011 21.5 0.1 0.0014 17.9 0.3 2.2 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332797250|ref|YP_004458750.1| - 0.00092 18.4 0.4 0.00092 18.4 0.4 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|332797250|ref|YP_004458750.1| - 0.0036 16.2 0.4 0.63 8.8 0.0 2.9 2 1 0 3 3 3 1 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|332797250|ref|YP_004458750.1| - 0.0054 15.8 0.3 0.033 13.2 0.3 2.0 1 1 0 1 1 1 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|332797250|ref|YP_004458750.1| - 0.015 14.6 0.1 0.12 11.7 0.1 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|332797250|ref|YP_004458750.1| - 0.054 14.1 0.8 0.25 11.9 0.8 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ETF_alpha PF00766.19 gi|332797251|ref|YP_004458751.1| - 2.5e-35 120.3 0.7 3.1e-33 113.7 0.1 3.1 3 0 0 3 3 3 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|332797251|ref|YP_004458751.1| - 1.2e-11 44.9 0.1 2.2e-11 44.0 0.1 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF PF01012.21 gi|332797252|ref|YP_004458752.1| - 1.5e-36 126.0 0.4 2e-36 125.6 0.4 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain Acyl-CoA_dh_1 PF00441.24 gi|332797253|ref|YP_004458753.1| - 1.2e-21 77.5 0.1 2.1e-21 76.7 0.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|332797253|ref|YP_004458753.1| - 2.8e-18 66.5 0.0 4.7e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|332797253|ref|YP_004458753.1| - 4.8e-12 45.9 0.1 8.2e-12 45.2 0.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|332797253|ref|YP_004458753.1| - 2e-09 38.1 0.0 4.4e-09 37.0 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Molybdopterin PF00384.22 gi|332797254|ref|YP_004458754.1| - 2.5e-40 138.8 0.0 8.6e-40 137.0 0.0 1.7 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|332797254|ref|YP_004458754.1| - 3.4e-18 65.7 0.0 6.4e-18 64.8 0.0 1.4 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|332797254|ref|YP_004458754.1| - 0.0019 18.1 1.6 0.0045 16.9 1.6 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Glycos_transf_2 PF00535.26 gi|332797255|ref|YP_004458755.1| - 3.4e-19 69.3 0.0 5.1e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_2 PF10111.9 gi|332797255|ref|YP_004458755.1| - 8e-06 25.5 0.0 1.4e-05 24.8 0.0 1.4 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_3 PF13641.6 gi|332797255|ref|YP_004458755.1| - 3.3e-05 23.9 0.0 7.2e-05 22.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_8 PF01501.20 gi|332797255|ref|YP_004458755.1| - 0.054 13.1 0.1 0.071 12.6 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 8 PaREP1 PF05942.11 gi|332797256|ref|YP_004458756.1| - 3.4e-23 81.8 0.0 5.2e-23 81.2 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Mrpl_C PF18502.1 gi|332797256|ref|YP_004458756.1| - 0.14 12.5 1.7 0.31 11.4 0.6 1.9 2 0 0 2 2 2 0 54S ribosomal protein L8 C-terminal domain DUF2953 PF11167.8 gi|332797257|ref|YP_004458757.1| - 0.11 12.6 1.3 0.11 12.6 1.3 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2953) TssN PF17555.2 gi|332797257|ref|YP_004458757.1| - 8.2 5.7 16.0 10 5.4 16.0 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN DUF1286 PF06939.11 gi|332797258|ref|YP_004458758.1| - 8.1e-30 103.4 1.3 8.1e-30 103.4 1.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1286) YdjM PF04307.14 gi|332797258|ref|YP_004458758.1| - 0.002 17.5 0.9 0.0025 17.2 0.9 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF4460 PF14687.6 gi|332797259|ref|YP_004458759.1| - 0.023 14.7 2.3 0.027 14.5 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4460) LRR_3 PF07725.12 gi|332797259|ref|YP_004458759.1| - 0.1 12.5 0.1 0.24 11.3 0.1 1.6 1 0 0 1 1 1 0 Leucine Rich Repeat Coatomer_E PF04733.14 gi|332797261|ref|YP_004458761.1| - 0.045 13.2 0.0 0.053 12.9 0.0 1.0 1 0 0 1 1 1 0 Coatomer epsilon subunit AAA_14 PF13173.6 gi|332797262|ref|YP_004458762.1| - 4.5e-21 75.3 0.0 6.3e-21 74.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain VAPB_antitox PF02697.14 gi|332797263|ref|YP_004458763.1| - 0.11 13.3 6.0 0.64 10.8 6.0 1.9 1 1 0 1 1 1 0 Putative antitoxin PIN PF01850.21 gi|332797264|ref|YP_004458764.1| - 3.5e-17 63.0 0.3 4.1e-17 62.8 0.3 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|332797264|ref|YP_004458764.1| - 3.4e-05 24.6 0.0 3.8e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 PIN domain Acetyltransf_3 PF13302.7 gi|332797265|ref|YP_004458765.1| - 4.3e-06 27.4 0.0 7.1e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|332797265|ref|YP_004458765.1| - 9.1e-06 25.9 0.1 1.5e-05 25.2 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|332797265|ref|YP_004458765.1| - 0.00058 19.8 0.2 0.0022 18.0 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain DUF2824 PF11039.8 gi|332797265|ref|YP_004458765.1| - 0.001 19.0 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2824) Acetyltransf_15 PF17013.5 gi|332797265|ref|YP_004458765.1| - 0.004 16.7 0.8 0.0047 16.4 0.8 1.3 1 0 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_7 PF13508.7 gi|332797265|ref|YP_004458765.1| - 0.0056 17.1 0.6 0.018 15.4 0.1 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|332797265|ref|YP_004458765.1| - 0.0097 15.9 0.1 0.047 13.6 0.0 2.2 2 1 0 2 2 2 1 FR47-like protein Holin_BhlA PF10960.8 gi|332797265|ref|YP_004458765.1| - 0.99 9.4 4.1 18 5.4 0.1 3.0 3 0 0 3 3 3 0 BhlA holin family PIN PF01850.21 gi|332797266|ref|YP_004458766.1| - 3.6e-13 50.1 3.7 4.1e-13 49.9 3.7 1.0 1 0 0 1 1 1 1 PIN domain HHH_9 PF17674.1 gi|332797267|ref|YP_004458767.1| - 0.073 14.0 0.3 0.45 11.5 0.3 1.9 1 1 0 1 1 1 0 HHH domain HARE-HTH PF05066.13 gi|332797267|ref|YP_004458767.1| - 0.12 12.8 0.9 2.4 8.6 0.0 2.1 1 1 1 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain DUF627 PF04781.12 gi|332797268|ref|YP_004458768.1| - 0.085 12.9 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF627) FPP PF05911.11 gi|332797268|ref|YP_004458768.1| - 0.14 10.4 0.1 0.14 10.3 0.1 1.0 1 0 0 1 1 1 0 Filament-like plant protein, long coiled-coil zinc_ribbon_15 PF17032.5 gi|332797269|ref|YP_004458769.1| - 0.0036 18.0 0.9 0.0071 17.1 0.9 1.5 1 1 0 1 1 1 1 zinc-ribbon family Lar_restr_allev PF14354.6 gi|332797269|ref|YP_004458769.1| - 0.0086 16.4 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar Redoxin PF08534.10 gi|332797269|ref|YP_004458769.1| - 0.014 15.2 0.0 0.014 15.1 0.0 1.1 1 0 0 1 1 1 0 Redoxin DZR PF12773.7 gi|332797269|ref|YP_004458769.1| - 0.021 14.8 0.1 0.089 12.8 0.0 1.8 1 1 1 2 2 2 0 Double zinc ribbon Endonuclease_7 PF02945.15 gi|332797269|ref|YP_004458769.1| - 0.075 13.0 0.4 0.84 9.6 0.3 2.2 1 1 0 1 1 1 0 Recombination endonuclease VII DUF749 PF05370.11 gi|332797270|ref|YP_004458770.1| - 0.096 12.8 0.5 0.12 12.4 0.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF749) MS_channel PF00924.18 gi|332797271|ref|YP_004458771.1| - 0.03 13.9 0.1 0.046 13.3 0.1 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel Glyco_transf_4 PF13439.6 gi|332797272|ref|YP_004458772.1| - 0.042 13.9 0.0 0.044 13.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyltransferase Family 4 PS_pyruv_trans PF04230.13 gi|332797272|ref|YP_004458772.1| - 0.068 13.1 0.1 0.078 12.9 0.1 1.1 1 0 0 1 1 1 0 Polysaccharide pyruvyl transferase Polysacc_synt PF01943.17 gi|332797274|ref|YP_004458774.1| - 3e-05 23.6 9.0 3e-05 23.6 9.0 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|332797274|ref|YP_004458774.1| - 0.014 15.4 16.2 0.014 15.4 16.2 3.4 1 1 2 3 3 3 0 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|332797275|ref|YP_004458775.1| - 7.2e-09 35.3 8.8 7.2e-09 35.3 8.8 2.8 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|332797275|ref|YP_004458775.1| - 1.2e-08 34.7 26.7 1.2e-08 34.7 26.7 3.1 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|332797275|ref|YP_004458775.1| - 1.2e-06 28.6 15.1 1.2e-06 28.6 15.1 3.6 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain DsrD PF08679.11 gi|332797277|ref|YP_004458777.1| - 0.79 10.0 3.8 7.8 6.8 0.3 2.2 1 1 1 2 2 2 0 Dissimilatory sulfite reductase D (DsrD) LisH_2 PF16045.5 gi|332797278|ref|YP_004458778.1| - 0.018 14.0 0.4 0.045 12.8 0.4 1.7 1 0 0 1 1 1 0 LisH YwiC PF14256.6 gi|332797278|ref|YP_004458778.1| - 0.8 10.0 10.4 0.26 11.6 1.4 3.7 2 1 0 3 3 3 0 YwiC-like protein Met_10 PF02475.16 gi|332797281|ref|YP_004458781.1| - 4.4e-08 33.1 0.2 7.7e-08 32.3 0.2 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_21 PF05050.12 gi|332797281|ref|YP_004458781.1| - 5.1e-08 33.1 0.1 9.3e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase FkbM domain RrnaAD PF00398.20 gi|332797281|ref|YP_004458781.1| - 0.00069 18.8 0.0 0.0011 18.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|332797281|ref|YP_004458781.1| - 0.025 15.3 0.0 0.057 14.1 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|332797281|ref|YP_004458781.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|332797281|ref|YP_004458781.1| - 0.12 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Conserved hypothetical protein 95 tRNA_U5-meth_tr PF05958.11 gi|332797281|ref|YP_004458781.1| - 0.14 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase MTS PF05175.14 gi|332797281|ref|YP_004458781.1| - 0.14 11.6 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|332797281|ref|YP_004458781.1| - 0.2 11.5 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_21 PF05050.12 gi|332797283|ref|YP_004458783.1| - 0.0081 16.2 0.6 0.0087 16.1 0.6 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain TraC PF07820.12 gi|332797283|ref|YP_004458783.1| - 0.0097 16.2 0.8 0.015 15.6 0.2 1.6 2 0 0 2 2 2 1 TraC-like protein Exonuc_VII_S PF02609.16 gi|332797283|ref|YP_004458783.1| - 0.012 15.7 0.7 0.021 14.9 0.7 1.4 1 0 0 1 1 1 0 Exonuclease VII small subunit MukF_C PF17193.4 gi|332797283|ref|YP_004458783.1| - 0.087 13.0 0.1 0.097 12.8 0.1 1.1 1 0 0 1 1 1 0 MukF C-terminal domain Met_10 PF02475.16 gi|332797284|ref|YP_004458784.1| - 1.3e-10 41.4 0.3 1.9e-10 40.9 0.3 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_21 PF05050.12 gi|332797284|ref|YP_004458784.1| - 6.7e-07 29.5 0.0 9.5e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|332797284|ref|YP_004458784.1| - 6.5e-05 22.4 0.0 8.4e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Vibrio cholerae RfbT protein PrmA PF06325.13 gi|332797284|ref|YP_004458784.1| - 0.0016 17.9 0.1 0.0021 17.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|332797284|ref|YP_004458784.1| - 0.0037 17.0 0.0 0.005 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TRM PF02005.16 gi|332797284|ref|YP_004458784.1| - 0.045 12.9 0.2 0.057 12.6 0.2 1.1 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_18 PF12847.7 gi|332797284|ref|YP_004458784.1| - 0.045 13.7 0.0 0.068 13.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332797284|ref|YP_004458784.1| - 0.053 13.3 0.0 0.08 12.7 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|332797284|ref|YP_004458784.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F Glycos_transf_2 PF00535.26 gi|332797285|ref|YP_004458785.1| - 1.7e-15 57.3 0.1 4.7e-15 55.8 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|332797285|ref|YP_004458785.1| - 0.00019 21.4 0.4 0.00083 19.3 0.2 1.8 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|332797285|ref|YP_004458785.1| - 0.01 15.3 0.1 0.019 14.4 0.1 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family 2 MraZ PF02381.18 gi|332797286|ref|YP_004458786.1| - 0.0014 18.6 0.0 0.002 18.1 0.0 1.3 1 0 0 1 1 1 1 MraZ protein, putative antitoxin-like MazE_antitoxin PF04014.18 gi|332797286|ref|YP_004458786.1| - 0.0038 17.1 0.0 0.0081 16.1 0.0 1.8 1 1 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PIN PF01850.21 gi|332797287|ref|YP_004458787.1| - 1.8e-06 28.5 0.3 4.4e-06 27.2 0.3 1.6 1 1 0 1 1 1 1 PIN domain DDE_Tnp_1_3 PF13612.6 gi|332797287|ref|YP_004458787.1| - 0.0028 17.7 0.1 0.0038 17.3 0.1 1.3 1 1 0 1 1 1 1 Transposase DDE domain DUF3677 PF12432.8 gi|332797289|ref|YP_004458789.1| - 0.066 13.5 0.6 0.14 12.5 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3677) Imm43 PF15570.6 gi|332797289|ref|YP_004458789.1| - 3.5 7.6 6.9 1.1 9.3 3.3 1.8 2 0 0 2 2 2 0 Immunity protein 43 PaREP1 PF05942.11 gi|332797290|ref|YP_004458790.1| - 9.2e-37 125.5 3.5 1.2e-36 125.1 3.5 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Telomere_reg-2 PF10193.9 gi|332797290|ref|YP_004458790.1| - 0.0018 18.7 0.4 0.0041 17.5 0.4 1.6 1 0 0 1 1 1 1 Telomere length regulation protein DUF357 PF04010.13 gi|332797290|ref|YP_004458790.1| - 0.0032 17.5 0.1 0.007 16.4 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF357) FliS PF02561.14 gi|332797290|ref|YP_004458790.1| - 0.017 15.4 1.7 0.021 15.1 0.6 1.7 2 0 0 2 2 2 0 Flagellar protein FliS Hydantoinase_A PF01968.18 gi|332797290|ref|YP_004458790.1| - 0.12 11.6 0.4 0.62 9.3 0.2 1.9 2 0 0 2 2 2 0 Hydantoinase/oxoprolinase HTH_26 PF13443.6 gi|332797292|ref|YP_004458792.1| - 0.00026 21.4 0.0 0.0008 19.8 0.0 1.8 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_19 PF12844.7 gi|332797292|ref|YP_004458792.1| - 0.0042 17.1 0.5 0.0097 15.9 0.3 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|332797292|ref|YP_004458792.1| - 0.006 16.7 0.1 0.017 15.3 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix of insertion element transposase YdaS_antitoxin PF15943.5 gi|332797292|ref|YP_004458792.1| - 0.0082 16.0 0.1 0.035 14.0 0.0 1.9 1 1 1 2 2 2 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_23 PF13384.6 gi|332797292|ref|YP_004458792.1| - 0.0088 15.8 1.5 0.019 14.8 0.0 2.4 3 2 0 3 3 3 1 Homeodomain-like domain HTH_3 PF01381.22 gi|332797292|ref|YP_004458792.1| - 0.01 15.9 0.1 0.04 14.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix Terminase_5 PF06056.12 gi|332797292|ref|YP_004458792.1| - 0.02 14.7 0.1 0.066 13.1 0.1 1.8 1 1 1 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) HTH_28 PF13518.6 gi|332797292|ref|YP_004458792.1| - 0.021 15.0 0.0 0.087 13.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|332797292|ref|YP_004458792.1| - 0.045 13.7 0.2 0.39 10.7 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain DUF1836 PF08876.11 gi|332797292|ref|YP_004458792.1| - 0.049 13.7 0.9 0.17 11.9 0.8 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF1836) HTH_29 PF13551.6 gi|332797292|ref|YP_004458792.1| - 0.066 13.2 0.0 0.25 11.4 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix MEF2_binding PF09047.10 gi|332797292|ref|YP_004458792.1| - 0.082 12.8 1.9 0.19 11.6 0.3 2.2 2 0 0 2 2 2 0 MEF2 binding DUF5040 PF16443.5 gi|332797294|ref|YP_004458794.1| - 0.026 13.9 0.1 0.028 13.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5040) Phage_lysozyme PF00959.19 gi|332797294|ref|YP_004458794.1| - 0.11 13.0 0.0 0.12 12.8 0.0 1.1 1 0 0 1 1 1 0 Phage lysozyme Cas_APE2256 PF09651.10 gi|332797298|ref|YP_004458798.1| - 1.8e-12 47.3 0.2 2.1e-12 47.1 0.2 1.0 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_APE2256) IL15 PF02372.15 gi|332797298|ref|YP_004458798.1| - 0.0055 16.7 0.1 0.0062 16.5 0.1 1.1 1 0 0 1 1 1 1 Interleukin 15 Carot_N PF09150.10 gi|332797298|ref|YP_004458798.1| - 0.038 13.9 0.1 0.12 12.2 0.1 1.7 1 1 1 2 2 2 0 Orange carotenoid protein, N-terminal SBP_bac_5 PF00496.22 gi|332797298|ref|YP_004458798.1| - 0.064 12.2 0.0 0.066 12.2 0.0 1.0 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle AAA_14 PF13173.6 gi|332797299|ref|YP_004458799.1| - 1.3e-18 67.3 0.1 8.4e-18 64.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|332797299|ref|YP_004458799.1| - 2.6e-12 47.0 0.2 4.7e-12 46.1 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) DUF234 PF03008.14 gi|332797299|ref|YP_004458799.1| - 0.023 15.2 0.1 0.065 13.7 0.1 1.8 1 0 0 1 1 1 0 Archaea bacterial proteins of unknown function PaREP1 PF05942.11 gi|332797300|ref|YP_004458800.1| - 5e-25 87.7 0.3 7.6e-25 87.1 0.3 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Glyco_hydro_31 PF01055.26 gi|332797301|ref|YP_004458801.1| - 1.8e-122 409.7 1.0 2.2e-122 409.5 1.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.6 gi|332797301|ref|YP_004458801.1| - 8.9e-17 61.2 0.1 1.8e-16 60.2 0.1 1.6 1 0 0 1 1 1 1 Galactose mutarotase-like GHL6 PF14871.6 gi|332797301|ref|YP_004458801.1| - 0.12 12.5 0.0 1.3 9.2 0.0 2.8 2 1 0 2 2 2 0 Hypothetical glycosyl hydrolase 6 Nramp PF01566.18 gi|332797303|ref|YP_004458803.1| - 4.3e-45 154.3 26.2 5.6e-45 153.9 26.2 1.2 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein MFS_1 PF07690.16 gi|332797304|ref|YP_004458804.1| - 2.4e-35 122.1 28.2 2.4e-35 122.1 28.2 2.1 1 1 1 2 2 2 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797304|ref|YP_004458804.1| - 2.3e-33 115.7 25.5 3.2e-33 115.3 25.5 1.2 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_4 PF06779.14 gi|332797304|ref|YP_004458804.1| - 7.3e-08 32.1 3.4 7.3e-08 32.1 3.4 2.6 2 1 0 3 3 3 1 Uncharacterised MFS-type transporter YbfB PPR PF01535.20 gi|332797304|ref|YP_004458804.1| - 0.21 11.9 0.6 0.52 10.7 0.6 1.7 1 0 0 1 1 1 0 PPR repeat Usp PF00582.26 gi|332797305|ref|YP_004458805.1| - 5.7e-29 101.4 0.2 6.7e-29 101.2 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family Y_Y_Y PF07495.13 gi|332797306|ref|YP_004458806.1| - 0.0016 18.3 2.2 0.17 11.8 0.5 2.8 2 0 0 2 2 2 2 Y_Y_Y domain CarbopepD_reg_2 PF13715.6 gi|332797306|ref|YP_004458806.1| - 0.28 11.2 4.7 0.33 11.0 1.8 2.4 2 0 0 2 2 2 0 CarboxypepD_reg-like domain zf-HIT PF04438.16 gi|332797307|ref|YP_004458807.1| - 0.013 15.3 0.3 0.025 14.4 0.3 1.5 1 1 0 1 1 1 0 HIT zinc finger Peptidase_M28 PF04389.17 gi|332797309|ref|YP_004458809.1| - 5.3e-09 36.0 0.1 1.9e-07 31.0 0.1 2.2 1 1 0 1 1 1 1 Peptidase family M28 AAA_14 PF13173.6 gi|332797310|ref|YP_004458810.1| - 5.4e-07 29.7 0.1 1e-06 28.8 0.1 1.4 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|332797310|ref|YP_004458810.1| - 0.00037 20.5 5.2 0.41 10.5 0.0 3.6 3 1 1 4 4 4 2 ATPase domain predominantly from Archaea Fe_dep_repress PF01325.19 gi|332797310|ref|YP_004458810.1| - 0.021 15.0 1.2 0.1 12.8 0.0 2.7 3 0 0 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain HSDR_N_2 PF13588.6 gi|332797310|ref|YP_004458810.1| - 0.023 14.7 0.2 0.074 13.1 0.0 1.8 2 0 0 2 2 2 0 Type I restriction enzyme R protein N terminus (HSDR_N) AAA_24 PF13479.6 gi|332797310|ref|YP_004458810.1| - 0.03 14.1 0.2 0.19 11.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain TrmB PF01978.19 gi|332797310|ref|YP_004458810.1| - 0.037 13.9 0.2 0.13 12.2 0.1 2.1 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FIIND PF13553.6 gi|332797310|ref|YP_004458810.1| - 0.04 13.3 0.1 0.07 12.5 0.1 1.4 1 0 0 1 1 1 0 Function to find ABC_tran PF00005.27 gi|332797310|ref|YP_004458810.1| - 0.048 14.2 0.0 1.9 9.0 0.0 2.3 2 0 0 2 2 2 0 ABC transporter PDDEXK_9 PF08011.11 gi|332797310|ref|YP_004458810.1| - 0.05 13.5 0.5 0.11 12.4 0.5 1.6 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily AAA PF00004.29 gi|332797310|ref|YP_004458810.1| - 0.094 13.1 0.0 0.24 11.8 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Viral_helicase1 PF01443.18 gi|332797310|ref|YP_004458810.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Lactamase_B PF00753.27 gi|332797311|ref|YP_004458811.1| - 2.5e-26 92.9 0.0 3.3e-26 92.5 0.0 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332797311|ref|YP_004458811.1| - 3.3e-05 23.5 0.0 4.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.6 gi|332797311|ref|YP_004458811.1| - 0.035 13.6 0.0 0.54 9.7 0.0 2.0 1 1 1 2 2 2 0 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|332797311|ref|YP_004458811.1| - 0.088 12.2 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Peptidase_U32 PF01136.19 gi|332797312|ref|YP_004458812.1| - 2.4e-13 49.8 0.0 6.1e-09 35.4 0.0 2.2 2 0 0 2 2 2 2 Peptidase family U32 DUF3996 PF13161.6 gi|332797312|ref|YP_004458812.1| - 0.015 15.0 0.2 0.025 14.3 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3996) NAGidase PF07555.13 gi|332797312|ref|YP_004458812.1| - 0.051 12.9 0.0 0.09 12.1 0.0 1.3 1 0 0 1 1 1 0 beta-N-acetylglucosaminidase GDPD_2 PF13653.6 gi|332797312|ref|YP_004458812.1| - 0.09 13.3 0.0 13 6.4 0.0 2.7 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family GBV-C_env PF12786.7 gi|332797313|ref|YP_004458813.1| - 0.53 8.9 1.2 0.75 8.4 1.2 1.1 1 0 0 1 1 1 0 GB virus C genotype envelope PaREP1 PF05942.11 gi|332797315|ref|YP_004458815.1| - 4.2e-26 91.1 0.5 5.5e-26 90.8 0.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family OrfB_Zn_ribbon PF07282.11 gi|332797317|ref|YP_004458817.1| - 9.5e-22 76.7 1.6 1.4e-21 76.2 0.4 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797317|ref|YP_004458817.1| - 0.00092 19.4 0.1 0.0018 18.5 0.1 1.5 1 0 0 1 1 1 1 Probable transposase zf-RING_4 PF14570.6 gi|332797317|ref|YP_004458817.1| - 0.018 14.9 1.1 0.04 13.7 1.1 1.6 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain DUF485 PF04341.12 gi|332797319|ref|YP_004458819.1| - 1.8 8.6 8.5 0.39 10.7 5.3 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF485 VAPB_antitox PF02697.14 gi|332797320|ref|YP_004458820.1| - 0.11 13.3 2.2 0.13 13.0 0.8 1.9 1 1 1 2 2 2 0 Putative antitoxin PIN PF01850.21 gi|332797321|ref|YP_004458821.1| - 5.4e-05 23.7 0.1 6.3e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|332797321|ref|YP_004458821.1| - 0.00087 19.0 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) RsgI_N PF12791.7 gi|332797321|ref|YP_004458821.1| - 0.021 14.7 2.8 0.045 13.7 0.1 2.2 2 1 0 2 2 2 0 Anti-sigma factor N-terminus MFS_1 PF07690.16 gi|332797322|ref|YP_004458822.1| - 5.4e-19 68.3 60.8 5.2e-12 45.4 32.1 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797322|ref|YP_004458822.1| - 6.8e-17 61.5 33.2 2.3e-13 49.9 13.0 2.2 2 0 0 2 2 2 2 Sugar (and other) transporter DUF2204 PF09970.9 gi|332797323|ref|YP_004458823.1| - 0.028 14.1 0.7 0.39 10.3 0.7 2.3 1 1 0 1 1 1 0 Nucleotidyl transferase of unknown function (DUF2204) Sod_Fe_C PF02777.18 gi|332797325|ref|YP_004458825.1| - 0.086 13.0 0.7 1.5 9.1 0.0 2.1 1 1 1 2 2 2 0 Iron/manganese superoxide dismutases, C-terminal domain MarR_2 PF12802.7 gi|332797326|ref|YP_004458826.1| - 0.23 11.4 0.0 0.38 10.7 0.0 1.3 1 0 0 1 1 1 0 MarR family Radical_SAM PF04055.21 gi|332797327|ref|YP_004458827.1| - 1.7e-17 64.3 1.9 1.3e-16 61.4 0.2 2.8 3 1 1 4 4 4 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|332797327|ref|YP_004458827.1| - 3.2e-09 37.2 0.0 7.7e-09 35.9 0.0 1.7 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|332797327|ref|YP_004458827.1| - 2.4e-05 24.4 0.0 8.2e-05 22.7 0.0 1.9 1 0 0 1 1 1 1 4Fe-4S single cluster domain Inhibitor_I9 PF05922.16 gi|332797327|ref|YP_004458827.1| - 0.019 15.6 0.2 0.084 13.5 0.0 2.1 3 0 0 3 3 3 0 Peptidase inhibitor I9 UvrA_inter PF17760.1 gi|332797327|ref|YP_004458827.1| - 0.051 13.7 0.2 1.6 8.8 0.0 2.8 3 0 0 3 3 3 0 UvrA interaction domain Qua1 PF16274.5 gi|332797327|ref|YP_004458827.1| - 0.06 13.2 0.7 0.06 13.2 0.7 1.7 2 0 0 2 2 2 0 Qua1 domain ABM PF03992.16 gi|332797328|ref|YP_004458828.1| - 3.6e-13 49.4 0.0 4.6e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|332797328|ref|YP_004458828.1| - 4e-05 22.7 0.2 0.012 14.6 0.0 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase DUF4936 PF16290.5 gi|332797328|ref|YP_004458828.1| - 0.0075 16.9 0.0 0.0096 16.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4936) Cytochrom_B_N_2 PF13631.6 gi|332797329|ref|YP_004458829.1| - 5.7e-58 195.7 7.0 5.7e-58 195.7 7.0 2.7 2 1 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|332797329|ref|YP_004458829.1| - 1e-21 77.6 13.4 1e-21 77.6 13.4 2.6 3 0 0 3 3 3 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|332797329|ref|YP_004458829.1| - 0.00018 21.7 1.4 0.00018 21.7 1.4 4.1 3 2 0 3 3 3 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|332797329|ref|YP_004458829.1| - 0.0044 17.5 1.0 0.0044 17.5 1.0 4.3 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) Rieske PF00355.26 gi|332797330|ref|YP_004458830.1| - 5.2e-07 29.5 0.2 2.6e-06 27.3 0.2 1.9 1 1 0 1 1 1 1 Rieske [2Fe-2S] domain TAT_signal PF10518.9 gi|332797330|ref|YP_004458830.1| - 1.1 9.2 5.6 0.14 12.1 0.7 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence EB_dh PF09459.10 gi|332797332|ref|YP_004458832.1| - 1.9e-30 106.6 0.0 3.9e-30 105.6 0.0 1.5 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Whib PF02467.16 gi|332797333|ref|YP_004458833.1| - 0.083 13.5 0.0 0.13 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcription factor WhiB MttA_Hcf106 PF02416.16 gi|332797334|ref|YP_004458834.1| - 8.9e-09 34.5 7.5 3.3e-08 32.7 7.5 2.0 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4834 PF16118.5 gi|332797334|ref|YP_004458834.1| - 0.00043 21.2 2.6 0.0006 20.7 2.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4834) CHD5 PF04420.14 gi|332797334|ref|YP_004458834.1| - 0.00089 19.1 2.7 0.0011 18.9 2.7 1.1 1 0 0 1 1 1 1 CHD5-like protein DUF4446 PF14584.6 gi|332797334|ref|YP_004458834.1| - 0.011 15.8 1.7 0.015 15.3 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4446) DUF3573 PF12097.8 gi|332797334|ref|YP_004458834.1| - 0.023 13.5 3.6 0.022 13.6 3.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) DUF3450 PF11932.8 gi|332797334|ref|YP_004458834.1| - 0.047 13.0 12.7 0.05 12.9 12.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF3989 PF13150.6 gi|332797334|ref|YP_004458834.1| - 0.053 13.3 1.1 0.08 12.7 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3989) DUF4140 PF13600.6 gi|332797334|ref|YP_004458834.1| - 0.076 13.5 8.3 0.095 13.1 8.3 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF5320 PF17253.2 gi|332797334|ref|YP_004458834.1| - 0.082 14.0 3.6 0.095 13.8 3.6 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5320) THOC7 PF05615.13 gi|332797334|ref|YP_004458834.1| - 0.11 12.8 10.3 0.13 12.6 10.3 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 DUF724 PF05266.14 gi|332797334|ref|YP_004458834.1| - 0.12 12.2 8.9 0.14 12.0 8.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Neur_chan_memb PF02932.16 gi|332797334|ref|YP_004458834.1| - 0.12 12.4 0.5 0.14 12.2 0.5 1.0 1 0 0 1 1 1 0 Neurotransmitter-gated ion-channel transmembrane region V_ATPase_I PF01496.19 gi|332797334|ref|YP_004458834.1| - 0.75 7.6 7.0 0.81 7.5 7.0 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Atg14 PF10186.9 gi|332797334|ref|YP_004458834.1| - 0.94 8.5 10.7 1 8.4 10.7 1.0 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|332797334|ref|YP_004458834.1| - 1.9 7.8 10.2 2.3 7.5 10.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2937 PF11157.8 gi|332797334|ref|YP_004458834.1| - 6 6.5 11.1 2.3 7.9 7.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) MttA_Hcf106 PF02416.16 gi|332797335|ref|YP_004458835.1| - 1.4e-05 24.3 1.9 2.9e-05 23.3 1.9 1.7 1 1 0 1 1 1 1 mttA/Hcf106 family Prefoldin_2 PF01920.20 gi|332797335|ref|YP_004458835.1| - 0.004 17.1 4.9 0.39 10.7 0.7 2.2 2 0 0 2 2 2 2 Prefoldin subunit MHC2-interact PF09307.10 gi|332797335|ref|YP_004458835.1| - 0.004 17.1 1.4 0.46 10.5 0.0 2.1 1 1 1 2 2 2 1 CLIP, MHC2 interacting DUF4618 PF15397.6 gi|332797335|ref|YP_004458835.1| - 0.0046 16.4 2.0 0.006 16.0 2.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4618) CLZ PF16526.5 gi|332797335|ref|YP_004458835.1| - 0.0089 16.4 3.3 0.39 11.1 0.1 2.2 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels FtsK_SpoIIIE PF01580.18 gi|332797335|ref|YP_004458835.1| - 0.0095 15.3 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 FtsK/SpoIIIE family DUF948 PF06103.11 gi|332797335|ref|YP_004458835.1| - 0.018 15.3 0.2 0.14 12.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF1192 PF06698.11 gi|332797335|ref|YP_004458835.1| - 0.019 15.0 0.2 0.019 15.0 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) SKA2 PF16740.5 gi|332797335|ref|YP_004458835.1| - 0.019 14.7 2.2 0.34 10.7 0.1 2.0 1 1 1 2 2 2 0 Spindle and kinetochore-associated protein 2 GrpE PF01025.19 gi|332797335|ref|YP_004458835.1| - 0.019 14.6 4.2 0.8 9.4 0.2 2.0 2 0 0 2 2 2 0 GrpE FlxA PF14282.6 gi|332797335|ref|YP_004458835.1| - 0.025 14.6 2.9 0.028 14.4 0.9 1.8 2 0 0 2 2 2 0 FlxA-like protein Paralemmin PF03285.15 gi|332797335|ref|YP_004458835.1| - 0.03 13.9 2.7 0.03 13.9 2.7 1.8 1 1 1 2 2 2 0 Paralemmin DivIC PF04977.15 gi|332797335|ref|YP_004458835.1| - 0.052 13.3 5.5 0.16 11.7 2.1 2.2 2 0 0 2 2 2 0 Septum formation initiator BST2 PF16716.5 gi|332797335|ref|YP_004458835.1| - 0.06 13.9 3.0 1.7 9.3 0.3 2.1 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 FapA PF03961.13 gi|332797335|ref|YP_004458835.1| - 0.063 11.9 2.5 0.066 11.8 2.5 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Fib_alpha PF08702.10 gi|332797335|ref|YP_004458835.1| - 0.065 13.4 2.6 0.12 12.6 2.6 1.4 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family Cob_adeno_trans PF01923.18 gi|332797335|ref|YP_004458835.1| - 0.076 13.2 0.1 0.086 13.0 0.1 1.1 1 0 0 1 1 1 0 Cobalamin adenosyltransferase Snf7 PF03357.21 gi|332797335|ref|YP_004458835.1| - 0.076 12.6 6.4 1.2 8.8 6.4 2.0 1 1 0 1 1 1 0 Snf7 Rx_N PF18052.1 gi|332797335|ref|YP_004458835.1| - 0.079 13.2 0.9 1.7 9.0 0.1 2.2 2 1 0 2 2 2 0 Rx N-terminal domain DUF2802 PF10975.8 gi|332797335|ref|YP_004458835.1| - 0.093 12.9 3.1 1.3 9.2 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2802) Spc24 PF08286.11 gi|332797335|ref|YP_004458835.1| - 0.1 12.9 3.9 1.7 8.9 0.7 2.1 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 Com_YlbF PF06133.11 gi|332797335|ref|YP_004458835.1| - 0.11 13.1 5.5 0.87 10.2 0.4 2.1 1 1 1 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA DUF1664 PF07889.12 gi|332797335|ref|YP_004458835.1| - 0.11 12.5 1.5 0.67 10.0 1.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) DUF4140 PF13600.6 gi|332797335|ref|YP_004458835.1| - 0.12 12.8 3.3 0.62 10.5 0.7 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) TMPIT PF07851.13 gi|332797335|ref|YP_004458835.1| - 0.14 11.4 1.2 0.16 11.2 1.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein Occludin_ELL PF07303.13 gi|332797335|ref|YP_004458835.1| - 0.14 12.9 3.6 0.26 12.0 3.6 1.4 1 1 0 1 1 1 0 Occludin homology domain Matrilin_ccoil PF10393.9 gi|332797335|ref|YP_004458835.1| - 0.15 12.0 1.9 1 9.3 0.1 2.4 2 0 0 2 2 2 0 Trimeric coiled-coil oligomerisation domain of matrilin Med9 PF07544.13 gi|332797335|ref|YP_004458835.1| - 0.15 12.2 5.0 0.54 10.4 1.5 2.2 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Snapin_Pallidin PF14712.6 gi|332797335|ref|YP_004458835.1| - 0.18 12.3 4.6 3 8.3 4.3 2.1 1 1 0 1 1 1 0 Snapin/Pallidin GIT_CC PF16559.5 gi|332797335|ref|YP_004458835.1| - 0.18 11.7 0.6 0.18 11.7 0.6 1.8 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF5595 PF18077.1 gi|332797335|ref|YP_004458835.1| - 0.41 10.8 4.3 0.38 10.9 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) V_ATPase_I PF01496.19 gi|332797335|ref|YP_004458835.1| - 0.62 7.9 3.7 0.65 7.9 3.2 1.3 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2951 PF11166.8 gi|332797335|ref|YP_004458835.1| - 0.7 10.1 4.6 0.88 9.8 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2951) TMF_DNA_bd PF12329.8 gi|332797335|ref|YP_004458835.1| - 0.79 9.8 9.5 1.9 8.6 2.9 2.1 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding FlaC_arch PF05377.11 gi|332797335|ref|YP_004458835.1| - 0.91 10.0 6.2 1.4 9.4 1.3 2.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Skp1 PF01466.19 gi|332797335|ref|YP_004458835.1| - 0.95 9.6 4.9 1.3 9.2 0.8 2.7 1 1 1 2 2 2 0 Skp1 family, dimerisation domain Fzo_mitofusin PF04799.13 gi|332797335|ref|YP_004458835.1| - 2.9 7.4 5.1 4.7 6.7 0.6 2.1 1 1 1 2 2 2 0 fzo-like conserved region TatC PF00902.18 gi|332797336|ref|YP_004458836.1| - 2e-44 151.9 22.4 2e-44 151.9 22.4 1.5 1 1 1 2 2 2 1 Sec-independent protein translocase protein (TatC) Pro_CA PF00484.19 gi|332797337|ref|YP_004458837.1| - 0.00025 21.4 0.1 0.00093 19.5 0.1 1.8 1 1 0 1 1 1 1 Carbonic anhydrase ATPase_2 PF01637.18 gi|332797338|ref|YP_004458838.1| - 9.7e-19 68.2 1.0 1.9e-18 67.3 1.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|332797338|ref|YP_004458838.1| - 7.4e-09 35.7 0.0 0.0029 17.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|332797338|ref|YP_004458838.1| - 4.3e-06 27.2 0.0 2.1e-05 25.0 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain Bac_DnaA PF00308.18 gi|332797338|ref|YP_004458838.1| - 0.0019 18.1 0.0 0.0044 16.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial dnaA protein AAA_35 PF14516.6 gi|332797338|ref|YP_004458838.1| - 0.0027 16.6 0.1 2 7.2 0.1 2.4 2 1 0 2 2 2 2 AAA-like domain AAA PF00004.29 gi|332797338|ref|YP_004458838.1| - 0.018 15.5 0.1 0.12 12.8 0.1 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TrmB PF01978.19 gi|332797338|ref|YP_004458838.1| - 0.033 14.1 0.2 0.26 11.2 0.0 2.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB NGF PF00243.18 gi|332797338|ref|YP_004458838.1| - 0.048 13.9 0.0 0.079 13.2 0.0 1.2 1 0 0 1 1 1 0 Nerve growth factor family HTH_36 PF13730.6 gi|332797338|ref|YP_004458838.1| - 0.15 12.0 0.8 1.2 9.1 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain PIN PF01850.21 gi|332797339|ref|YP_004458839.1| - 6.6e-06 26.6 0.6 1.9e-05 25.2 0.6 1.7 1 1 0 1 1 1 1 PIN domain ATPase_2 PF01637.18 gi|332797339|ref|YP_004458839.1| - 0.029 14.3 1.2 0.037 13.9 1.2 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF247 PF03140.15 gi|332797339|ref|YP_004458839.1| - 0.078 12.2 1.6 0.091 12.0 1.6 1.1 1 0 0 1 1 1 0 Plant protein of unknown function SMK-1 PF04802.15 gi|332797339|ref|YP_004458839.1| - 0.11 12.3 4.6 0.15 11.9 4.6 1.2 1 0 0 1 1 1 0 Component of IIS longevity pathway SMK-1 zf-C2H2_4 PF13894.6 gi|332797341|ref|YP_004458841.1| - 2.8e-06 27.7 5.3 0.008 16.9 0.4 2.2 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|332797341|ref|YP_004458841.1| - 6.6e-06 26.3 4.5 0.0077 16.6 0.2 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-Di19 PF05605.12 gi|332797341|ref|YP_004458841.1| - 0.0063 16.8 2.9 0.014 15.7 2.9 1.6 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_2 PF12756.7 gi|332797341|ref|YP_004458841.1| - 0.014 15.7 2.8 0.064 13.6 0.7 2.0 1 1 1 2 2 2 0 C2H2 type zinc-finger (2 copies) Zn-ribbon_8 PF09723.10 gi|332797341|ref|YP_004458841.1| - 0.03 14.5 0.9 0.1 12.7 0.9 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF629 PF04780.12 gi|332797341|ref|YP_004458841.1| - 0.032 12.8 1.2 0.72 8.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF629) zf-met PF12874.7 gi|332797341|ref|YP_004458841.1| - 0.033 14.6 3.8 0.16 12.4 0.3 2.4 2 0 0 2 2 2 0 Zinc-finger of C2H2 type zf-H2C2_2 PF13465.6 gi|332797341|ref|YP_004458841.1| - 0.04 14.4 5.9 2.8 8.5 1.2 2.7 3 0 0 3 3 3 0 Zinc-finger double domain zf_UBZ PF18439.1 gi|332797341|ref|YP_004458841.1| - 0.13 11.9 4.2 14 5.4 0.2 3.1 2 1 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DCA16 PF15349.6 gi|332797341|ref|YP_004458841.1| - 0.16 11.5 0.1 0.15 11.6 0.1 1.0 1 0 0 1 1 1 0 DDB1- and CUL4-associated factor 16 zinc_ribbon_4 PF13717.6 gi|332797341|ref|YP_004458841.1| - 0.25 11.3 2.9 0.6 10.1 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF488 PF04343.13 gi|332797342|ref|YP_004458842.1| - 1.5e-28 99.9 0.2 1.7e-28 99.6 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF488 DUF3135 PF11333.8 gi|332797342|ref|YP_004458842.1| - 0.19 12.0 0.1 0.43 10.9 0.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3135) HTH_10 PF04967.12 gi|332797343|ref|YP_004458843.1| - 4.9e-21 74.3 0.2 8.8e-21 73.5 0.2 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|332797343|ref|YP_004458843.1| - 2.4e-08 33.4 0.3 5e-08 32.3 0.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|332797343|ref|YP_004458843.1| - 2.6e-05 23.7 0.3 0.00028 20.4 0.1 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|332797343|ref|YP_004458843.1| - 0.0015 18.2 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_26 PF13443.6 gi|332797343|ref|YP_004458843.1| - 0.0024 18.3 0.1 0.02 15.3 0.0 2.4 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_35 PF13693.6 gi|332797343|ref|YP_004458843.1| - 0.0027 17.7 0.1 0.095 12.8 0.0 2.4 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|332797343|ref|YP_004458843.1| - 0.0032 17.5 0.0 0.007 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|332797343|ref|YP_004458843.1| - 0.0036 17.2 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|332797343|ref|YP_004458843.1| - 0.0038 16.8 0.4 0.039 13.5 0.1 2.7 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_psq PF05225.16 gi|332797343|ref|YP_004458843.1| - 0.021 14.6 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MarR PF01047.22 gi|332797343|ref|YP_004458843.1| - 0.022 14.7 0.2 0.1 12.6 0.1 2.2 2 1 0 2 2 2 0 MarR family MarR_2 PF12802.7 gi|332797343|ref|YP_004458843.1| - 0.048 13.6 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 MarR family TubC_N PF18563.1 gi|332797343|ref|YP_004458843.1| - 0.061 13.3 0.4 12 5.9 0.0 3.0 3 0 0 3 3 3 0 TubC N-terminal docking domain HTH_AsnC-type PF13404.6 gi|332797343|ref|YP_004458843.1| - 0.083 12.7 0.1 3 7.7 0.0 2.4 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_25 PF13413.6 gi|332797343|ref|YP_004458843.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.11 gi|332797343|ref|YP_004458843.1| - 0.11 13.2 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_IclR PF09339.10 gi|332797343|ref|YP_004458843.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|332797343|ref|YP_004458843.1| - 0.15 12.1 0.1 0.43 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|332797343|ref|YP_004458843.1| - 0.16 11.7 2.0 1.1 9.0 0.4 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|332797343|ref|YP_004458843.1| - 0.17 11.3 0.0 0.36 10.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 CBS PF00571.28 gi|332797345|ref|YP_004458845.1| - 3.4e-38 129.9 11.9 1.8e-10 41.1 0.5 4.6 5 0 0 5 5 5 4 CBS domain AsnC_trans_reg PF01037.21 gi|332797345|ref|YP_004458845.1| - 4.1e-08 33.1 0.1 7.7e-08 32.2 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain DUF1382 PF07131.11 gi|332797345|ref|YP_004458845.1| - 0.015 15.3 0.1 7.8 6.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1382) SpoVT_C PF15714.5 gi|332797345|ref|YP_004458845.1| - 0.084 12.9 0.2 1.4 9.0 0.0 2.4 2 0 0 2 2 2 0 Stage V sporulation protein T C-terminal, transcription factor GYD PF08734.11 gi|332797345|ref|YP_004458845.1| - 0.095 12.7 0.1 0.23 11.4 0.1 1.7 1 0 0 1 1 1 0 GYD domain PQQ_2 PF13360.6 gi|332797346|ref|YP_004458846.1| - 3.2e-21 76.0 0.0 6.2e-10 39.1 0.0 2.8 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|332797346|ref|YP_004458846.1| - 2e-14 52.7 17.7 0.01 15.7 0.0 7.7 8 0 0 8 8 8 6 PQQ enzyme repeat PQQ_3 PF13570.6 gi|332797346|ref|YP_004458846.1| - 9.9e-12 45.0 16.2 0.0077 16.7 0.0 6.7 7 1 0 7 7 7 4 PQQ-like domain PaREP1 PF05942.11 gi|332797347|ref|YP_004458847.1| - 1.3e-27 96.0 0.4 1.4e-27 95.9 0.4 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family FliS PF02561.14 gi|332797347|ref|YP_004458847.1| - 0.03 14.6 0.4 3.3 8.0 0.0 2.1 2 0 0 2 2 2 0 Flagellar protein FliS Myb_DNA-bind_7 PF15963.5 gi|332797348|ref|YP_004458848.1| - 0.02 14.8 0.7 0.023 14.6 0.7 1.2 1 0 0 1 1 1 0 Myb DNA-binding like RHH_6 PF16762.5 gi|332797348|ref|YP_004458848.1| - 0.081 13.6 0.1 0.094 13.3 0.1 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix domain PIN PF01850.21 gi|332797349|ref|YP_004458849.1| - 4.6e-11 43.3 2.6 5.1e-11 43.1 2.6 1.0 1 0 0 1 1 1 1 PIN domain DUF4447 PF14590.6 gi|332797349|ref|YP_004458849.1| - 0.093 12.5 0.4 0.096 12.5 0.4 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4447) Glyco_hydro_28 PF00295.17 gi|332797349|ref|YP_004458849.1| - 0.15 11.1 0.0 0.18 10.8 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 28 DUF4064 PF13273.6 gi|332797350|ref|YP_004458850.1| - 0.16 12.3 12.2 0.85 9.9 8.9 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF4079 PF13301.6 gi|332797350|ref|YP_004458850.1| - 0.48 10.6 4.1 5.7 7.1 4.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF4079) Tetraspanin PF00335.20 gi|332797350|ref|YP_004458850.1| - 3.6 7.2 4.8 2.8 7.6 4.0 1.4 1 1 0 1 1 1 0 Tetraspanin family Linocin_M18 PF04454.12 gi|332797352|ref|YP_004458852.1| - 6e-15 55.2 0.0 1.2e-14 54.2 0.0 1.4 1 1 0 1 1 1 1 Encapsulating protein for peroxidase Rubrerythrin PF02915.17 gi|332797352|ref|YP_004458852.1| - 0.078 13.4 1.8 0.15 12.5 1.3 1.8 1 1 0 1 1 1 0 Rubrerythrin Nitroreductase PF00881.24 gi|332797353|ref|YP_004458853.1| - 7.6e-13 48.9 0.1 1.6e-08 34.8 0.0 2.0 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|332797353|ref|YP_004458853.1| - 8.1e-05 22.3 0.0 0.00037 20.1 0.0 1.8 1 1 0 1 1 1 1 Putative TM nitroreductase Peptidase_M23 PF01551.22 gi|332797354|ref|YP_004458854.1| - 0.0035 17.5 0.0 0.0098 16.1 0.0 1.7 1 0 0 1 1 1 1 Peptidase family M23 Radical_SAM PF04055.21 gi|332797355|ref|YP_004458855.1| - 9.6e-12 45.6 2.9 1.2e-11 45.3 0.6 2.2 2 1 1 3 3 3 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|332797355|ref|YP_004458855.1| - 0.019 15.2 0.0 0.039 14.2 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Ntox14 PF15522.6 gi|332797355|ref|YP_004458855.1| - 0.19 11.1 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Novel toxin 14 Radical_SAM PF04055.21 gi|332797356|ref|YP_004458856.1| - 4.7e-08 33.6 0.1 2.2e-07 31.4 0.1 1.9 1 1 1 2 2 2 1 Radical SAM superfamily YqaH PF17448.2 gi|332797356|ref|YP_004458856.1| - 0.087 13.1 0.1 0.18 12.1 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized YqaH-like BPL_LplA_LipB PF03099.19 gi|332797357|ref|YP_004458857.1| - 2e-05 24.5 0.3 0.00018 21.4 0.3 2.2 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family GCV_H PF01597.19 gi|332797359|ref|YP_004458859.1| - 1.2e-31 109.1 1.8 1.4e-31 108.9 1.8 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Intein_splicing PF14890.6 gi|332797359|ref|YP_004458859.1| - 0.028 14.4 0.6 0.043 13.8 0.6 1.4 1 1 0 1 1 1 0 Intein splicing domain Biotin_lipoyl PF00364.22 gi|332797359|ref|YP_004458859.1| - 0.043 13.6 0.1 0.07 13.0 0.1 1.4 1 0 0 1 1 1 0 Biotin-requiring enzyme Lip_prot_lig_C PF10437.9 gi|332797360|ref|YP_004458860.1| - 9.4e-05 22.3 0.6 0.00024 21.0 0.6 1.7 1 0 0 1 1 1 1 Bacterial lipoate protein ligase C-terminus BPL_LplA_LipB PF03099.19 gi|332797360|ref|YP_004458860.1| - 0.008 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family RNA_pol_Rpb1_7 PF04990.12 gi|332797360|ref|YP_004458860.1| - 0.022 14.7 2.4 0.19 11.7 0.3 2.5 2 1 0 2 2 2 0 RNA polymerase Rpb1, domain 7 GCV_H PF01597.19 gi|332797361|ref|YP_004458861.1| - 1.1e-40 138.4 0.7 1.4e-40 138.0 0.7 1.1 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|332797361|ref|YP_004458861.1| - 6.1e-06 26.0 1.4 1e-05 25.2 1.4 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|332797361|ref|YP_004458861.1| - 0.0011 18.9 0.1 0.0018 18.2 0.1 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|332797361|ref|YP_004458861.1| - 0.0011 18.2 0.2 0.0061 15.8 0.1 2.4 2 1 0 2 2 2 1 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRG PF05712.13 gi|332797361|ref|YP_004458861.1| - 0.022 14.1 0.0 0.029 13.7 0.0 1.1 1 0 0 1 1 1 0 MRG CBS PF00571.28 gi|332797362|ref|YP_004458862.1| - 1.6e-09 38.1 0.3 0.002 18.5 0.0 3.2 3 0 0 3 3 3 2 CBS domain OsmC PF02566.19 gi|332797364|ref|YP_004458864.1| - 1e-18 67.6 0.0 1.3e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 OsmC-like protein Nic96 PF04097.14 gi|332797365|ref|YP_004458865.1| - 0.0097 14.4 0.5 0.011 14.3 0.5 1.0 1 0 0 1 1 1 1 Nup93/Nic96 NAGLU_C PF12972.7 gi|332797365|ref|YP_004458865.1| - 0.052 13.1 0.4 5.5 6.4 0.0 2.0 1 1 1 2 2 2 0 Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain CCG PF02754.16 gi|332797366|ref|YP_004458866.1| - 1.2e-29 102.3 0.0 8.9e-16 57.9 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|332797367|ref|YP_004458867.1| - 6.7e-09 36.1 7.0 1.1e-08 35.3 7.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332797367|ref|YP_004458867.1| - 3.5e-08 33.5 11.0 5e-07 29.8 12.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797367|ref|YP_004458867.1| - 2e-07 31.4 4.4 3.4e-07 30.7 4.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797367|ref|YP_004458867.1| - 9e-07 29.4 6.9 1.4e-06 28.8 6.9 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332797367|ref|YP_004458867.1| - 4.2e-05 24.4 3.7 0.0036 18.2 0.7 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|332797367|ref|YP_004458867.1| - 0.0019 18.3 10.8 0.0077 16.3 11.1 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|332797367|ref|YP_004458867.1| - 0.011 15.5 0.8 0.011 15.5 0.8 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|332797367|ref|YP_004458867.1| - 0.017 15.2 8.0 0.077 13.1 8.0 1.9 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332797367|ref|YP_004458867.1| - 0.018 15.9 4.3 0.77 10.6 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332797367|ref|YP_004458867.1| - 0.04 14.4 13.9 0.46 11.1 3.5 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332797367|ref|YP_004458867.1| - 0.17 12.0 13.2 0.13 12.4 1.6 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|332797367|ref|YP_004458867.1| - 0.49 10.3 13.6 0.74 9.7 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|332797367|ref|YP_004458867.1| - 0.93 9.7 6.7 0.25 11.5 0.3 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain Borrelia_lipo_1 PF05714.11 gi|332797368|ref|YP_004458868.1| - 0.043 13.6 0.5 0.043 13.6 0.5 1.5 2 0 0 2 2 2 0 Borrelia burgdorferi virulent strain associated lipoprotein DUF3725 PF12523.8 gi|332797368|ref|YP_004458868.1| - 0.09 13.1 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3725) Pyr_redox_2 PF07992.14 gi|332797369|ref|YP_004458869.1| - 6.4e-18 65.0 0.0 9.1e-18 64.5 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|332797369|ref|YP_004458869.1| - 7.4e-08 32.0 0.1 1.6e-07 30.9 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|332797369|ref|YP_004458869.1| - 8e-07 28.5 0.0 3.1e-06 26.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|332797369|ref|YP_004458869.1| - 9.6e-06 25.7 0.0 1.9e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|332797369|ref|YP_004458869.1| - 1.8e-05 24.3 0.0 3.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|332797369|ref|YP_004458869.1| - 5.4e-05 22.1 0.2 0.0018 17.1 0.1 2.1 1 1 1 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|332797369|ref|YP_004458869.1| - 8.1e-05 21.9 0.0 0.029 13.4 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|332797369|ref|YP_004458869.1| - 0.00012 21.6 0.0 0.03 13.6 0.0 2.3 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|332797369|ref|YP_004458869.1| - 0.00073 18.9 0.6 0.0036 16.6 0.1 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|332797369|ref|YP_004458869.1| - 0.0016 17.8 0.0 0.0026 17.0 0.0 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|332797369|ref|YP_004458869.1| - 0.0022 18.4 0.0 0.0044 17.4 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding DAO PF01266.24 gi|332797369|ref|YP_004458869.1| - 0.0029 17.2 0.1 0.0086 15.7 0.0 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|332797369|ref|YP_004458869.1| - 0.0033 17.9 0.3 0.011 16.3 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|332797369|ref|YP_004458869.1| - 0.0057 16.0 0.0 0.0097 15.2 0.0 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|332797369|ref|YP_004458869.1| - 0.026 14.5 0.0 0.36 10.8 0.0 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|332797369|ref|YP_004458869.1| - 0.084 11.9 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein CCG PF02754.16 gi|332797370|ref|YP_004458870.1| - 4.8e-09 36.3 0.0 2.4e-06 27.7 0.0 3.9 4 1 0 4 4 4 1 Cysteine-rich domain Fer4_8 PF13183.6 gi|332797371|ref|YP_004458871.1| - 1.2e-07 32.1 15.4 9.1e-07 29.2 7.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797371|ref|YP_004458871.1| - 1.9e-07 31.1 6.4 3.4e-07 30.3 6.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797371|ref|YP_004458871.1| - 2.7e-07 31.0 7.2 5.4e-07 30.1 7.2 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797371|ref|YP_004458871.1| - 2.7e-06 27.9 6.5 5.4e-06 26.9 6.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332797371|ref|YP_004458871.1| - 2.7e-06 27.4 8.8 1.3e-05 25.3 9.5 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332797371|ref|YP_004458871.1| - 0.00062 20.7 8.3 0.002 19.0 8.3 1.9 1 1 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|332797371|ref|YP_004458871.1| - 0.00095 19.1 12.5 0.025 14.7 3.6 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|332797371|ref|YP_004458871.1| - 0.0038 17.6 11.3 0.0046 17.3 1.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain DUF3106 PF11304.8 gi|332797371|ref|YP_004458871.1| - 0.024 15.1 0.4 0.48 10.9 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3106) Fer4_20 PF14691.6 gi|332797371|ref|YP_004458871.1| - 0.033 14.0 5.9 0.084 12.6 0.3 2.3 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_21 PF14697.6 gi|332797371|ref|YP_004458871.1| - 0.055 13.6 9.4 0.4 10.8 9.4 2.0 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332797371|ref|YP_004458871.1| - 0.16 12.1 12.9 1.1 9.5 2.1 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|332797371|ref|YP_004458871.1| - 0.35 10.8 16.9 0.17 11.8 2.8 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|332797371|ref|YP_004458871.1| - 2.8 8.2 5.8 18 5.6 0.6 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332797371|ref|YP_004458871.1| - 5.6 7.9 12.0 1.7 9.5 1.2 2.4 1 1 0 2 2 2 0 4Fe-4S dicluster domain TusA PF01206.17 gi|332797372|ref|YP_004458872.1| - 4.3e-23 80.9 0.0 4.9e-23 80.7 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DrsE_2 PF13686.6 gi|332797373|ref|YP_004458873.1| - 2.1e-25 89.4 0.8 5.2e-23 81.6 0.8 2.0 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|332797373|ref|YP_004458873.1| - 2.6e-08 34.2 0.0 5.1e-08 33.3 0.0 1.4 1 1 0 1 1 1 1 DsrE/DsrF-like family Band_7_1 PF13421.6 gi|332797373|ref|YP_004458873.1| - 0.045 13.4 0.0 0.054 13.2 0.0 1.2 1 0 0 1 1 1 0 SPFH domain-Band 7 family DrsE PF02635.15 gi|332797374|ref|YP_004458874.1| - 6.5e-23 81.3 0.0 7.3e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|332797374|ref|YP_004458874.1| - 1.9e-14 53.9 0.6 2e-06 27.8 0.0 2.0 1 1 1 2 2 2 2 DsrE/DsrF/DrsH-like family Pyr_redox_2 PF07992.14 gi|332797375|ref|YP_004458875.1| - 9.6e-53 179.3 4.4 1.3e-52 178.9 4.4 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332797375|ref|YP_004458875.1| - 1.2e-19 70.8 3.4 1.9e-19 70.0 3.4 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797375|ref|YP_004458875.1| - 5.5e-19 68.5 14.5 1.8e-17 63.6 0.9 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332797375|ref|YP_004458875.1| - 1.9e-16 60.3 0.1 4.6e-16 59.1 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GIDA PF01134.22 gi|332797375|ref|YP_004458875.1| - 7.3e-10 38.5 11.5 0.00017 20.8 0.9 4.1 2 2 2 4 4 4 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|332797375|ref|YP_004458875.1| - 5.6e-06 26.0 4.8 0.0009 18.7 0.2 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|332797375|ref|YP_004458875.1| - 1.8e-05 23.7 9.2 0.0088 14.8 2.1 3.8 4 0 0 4 4 4 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|332797375|ref|YP_004458875.1| - 2e-05 24.0 3.9 0.0034 16.7 1.2 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|332797375|ref|YP_004458875.1| - 4.7e-05 23.1 14.0 0.7 9.4 0.0 4.4 5 0 0 5 5 5 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|332797375|ref|YP_004458875.1| - 8.6e-05 22.7 8.5 0.0024 18.1 1.6 2.4 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|332797375|ref|YP_004458875.1| - 0.00021 20.3 5.5 0.0006 18.8 0.6 2.2 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|332797375|ref|YP_004458875.1| - 0.00029 20.1 9.0 0.0017 17.5 2.1 2.6 2 0 0 2 2 2 2 FAD binding domain AlaDh_PNT_C PF01262.21 gi|332797375|ref|YP_004458875.1| - 0.00094 18.5 4.9 0.0063 15.8 0.1 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.16 gi|332797375|ref|YP_004458875.1| - 0.0016 18.1 4.2 4.3 7.0 0.0 3.5 3 0 0 3 3 3 2 Ketopantoate reductase PanE/ApbA K_oxygenase PF13434.6 gi|332797375|ref|YP_004458875.1| - 0.0018 17.5 0.0 0.014 14.6 0.0 2.1 1 1 1 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) Thi4 PF01946.17 gi|332797375|ref|YP_004458875.1| - 0.024 13.9 7.6 0.18 11.0 0.2 3.4 4 1 0 4 4 4 0 Thi4 family Lycopene_cycl PF05834.12 gi|332797375|ref|YP_004458875.1| - 0.049 12.7 3.2 0.31 10.1 0.1 2.4 3 0 0 3 3 3 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|332797375|ref|YP_004458875.1| - 0.1 12.5 0.0 0.1 12.5 0.0 2.6 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|332797375|ref|YP_004458875.1| - 0.37 10.4 6.9 0.58 9.7 0.1 2.4 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|332797375|ref|YP_004458875.1| - 0.96 9.4 3.3 7.6 6.5 0.0 2.7 3 0 0 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|332797375|ref|YP_004458875.1| - 9.5 6.5 9.7 8.6 6.6 1.1 3.3 3 0 0 3 3 3 0 TrkA-N domain Thioredoxin_3 PF13192.6 gi|332797377|ref|YP_004458877.1| - 7.9e-10 38.6 0.5 2e-09 37.4 0.2 1.7 2 0 0 2 2 2 1 Thioredoxin domain Glutaredoxin PF00462.24 gi|332797377|ref|YP_004458877.1| - 0.0013 19.0 0.5 0.0033 17.6 0.2 1.8 2 0 0 2 2 2 1 Glutaredoxin Thioredoxin PF00085.20 gi|332797377|ref|YP_004458877.1| - 0.0038 17.2 0.3 0.023 14.7 0.1 2.2 2 1 0 2 2 2 1 Thioredoxin DUF836 PF05768.14 gi|332797377|ref|YP_004458877.1| - 0.0061 16.9 0.1 0.015 15.7 0.1 1.7 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_9 PF14595.6 gi|332797377|ref|YP_004458877.1| - 0.054 13.3 0.0 0.093 12.5 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin PIN_5 PF08745.11 gi|332797378|ref|YP_004458878.1| - 0.00045 19.7 0.6 0.0015 18.0 0.1 1.8 2 1 0 2 2 2 1 PINc domain ribonuclease CAF1 PF04857.20 gi|332797378|ref|YP_004458878.1| - 0.079 12.1 0.0 0.08 12.1 0.0 1.1 1 0 0 1 1 1 0 CAF1 family ribonuclease GSIII_N PF12437.8 gi|332797378|ref|YP_004458878.1| - 0.13 11.9 0.0 0.24 11.0 0.0 1.4 1 1 0 1 1 1 0 Glutamine synthetase type III N terminal Hist_deacetyl PF00850.19 gi|332797379|ref|YP_004458879.1| - 2e-63 214.7 0.0 2.9e-63 214.2 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain TusA PF01206.17 gi|332797380|ref|YP_004458880.1| - 6.8e-14 51.5 0.2 8.2e-14 51.2 0.2 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF4065 PF13274.6 gi|332797381|ref|YP_004458881.1| - 0.014 16.2 0.0 0.024 15.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4065) YHS PF04945.13 gi|332797382|ref|YP_004458882.1| - 1.7e-07 31.2 0.8 2.6e-07 30.6 0.8 1.3 1 1 0 1 1 1 1 YHS domain zf-C2HC_2 PF13913.6 gi|332797382|ref|YP_004458882.1| - 0.12 12.2 0.1 0.12 12.2 0.1 2.2 4 0 0 4 4 4 0 zinc-finger of a C2HC-type Zn-C2H2_12 PF18112.1 gi|332797382|ref|YP_004458882.1| - 0.81 10.2 4.9 0.56 10.7 1.5 2.1 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain TrmO PF01980.16 gi|332797383|ref|YP_004458883.1| - 4.8e-32 110.7 0.0 6.4e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O Pyr_redox_2 PF07992.14 gi|332797386|ref|YP_004458886.1| - 7.1e-56 189.6 0.8 9.6e-56 189.2 0.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332797386|ref|YP_004458886.1| - 6.6e-23 81.1 0.2 1.4e-22 80.0 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|332797386|ref|YP_004458886.1| - 4.2e-14 52.5 7.9 2.1e-13 50.2 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797386|ref|YP_004458886.1| - 7.3e-12 45.7 0.7 7.3e-12 45.7 0.7 2.5 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332797386|ref|YP_004458886.1| - 3.9e-06 26.2 10.1 0.016 14.3 0.3 4.0 3 1 1 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|332797386|ref|YP_004458886.1| - 4.6e-05 22.3 2.2 0.0041 15.9 0.0 2.7 2 1 1 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|332797386|ref|YP_004458886.1| - 0.012 14.7 2.9 1.9 7.5 0.1 2.5 3 0 0 3 3 3 0 FAD binding domain FAD_oxidored PF12831.7 gi|332797386|ref|YP_004458886.1| - 0.11 11.8 0.0 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 FAD dependent oxidoreductase MazE_antitoxin PF04014.18 gi|332797387|ref|YP_004458887.1| - 7.5e-14 51.3 0.5 1.2e-13 50.6 0.5 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|332797387|ref|YP_004458887.1| - 1.1e-05 25.8 0.1 2.2e-05 24.8 0.1 1.6 1 1 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin CDC48_N PF02359.18 gi|332797387|ref|YP_004458887.1| - 0.00023 21.3 0.2 0.0079 16.4 0.2 2.1 1 1 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain eIF-1a PF01176.19 gi|332797387|ref|YP_004458887.1| - 0.0003 20.5 0.2 0.00048 19.9 0.2 1.4 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF1905 PF08922.11 gi|332797387|ref|YP_004458887.1| - 0.018 15.1 0.1 0.07 13.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1905) Thump_like PF18096.1 gi|332797387|ref|YP_004458887.1| - 0.053 13.4 0.0 0.092 12.7 0.0 1.4 1 0 0 1 1 1 0 THUMP domain-like AbrB-like PF14250.6 gi|332797387|ref|YP_004458887.1| - 0.082 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator Big_8 PF17961.1 gi|332797387|ref|YP_004458887.1| - 0.086 13.0 0.0 0.13 12.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial Ig domain PIN PF01850.21 gi|332797388|ref|YP_004458888.1| - 6.8e-09 36.3 0.3 7.5e-09 36.1 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_12 PF16289.5 gi|332797388|ref|YP_004458888.1| - 0.0091 16.5 0.3 0.0095 16.4 0.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_8 PF18476.1 gi|332797388|ref|YP_004458888.1| - 0.019 14.8 0.2 0.02 14.8 0.2 1.0 1 0 0 1 1 1 0 PIN like domain NB-LRR PF12061.8 gi|332797388|ref|YP_004458888.1| - 0.048 13.0 0.2 0.048 13.0 0.2 1.1 1 0 0 1 1 1 0 Late blight resistance protein R1 ADH_N PF08240.12 gi|332797389|ref|YP_004458889.1| - 1.9e-25 88.8 1.6 2.8e-25 88.3 0.0 2.1 3 1 0 3 3 3 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|332797389|ref|YP_004458889.1| - 3.3e-22 78.9 1.4 5.5e-22 78.1 0.7 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|332797389|ref|YP_004458889.1| - 5.9e-06 27.4 0.0 1.1e-05 26.4 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Rhodanese PF00581.20 gi|332797389|ref|YP_004458889.1| - 0.00082 19.9 0.0 0.051 14.1 0.0 2.5 2 0 0 2 2 2 1 Rhodanese-like domain ELFV_dehydrog PF00208.21 gi|332797389|ref|YP_004458889.1| - 0.0047 16.7 0.3 0.008 15.9 0.3 1.3 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SIS_2 PF13580.6 gi|332797389|ref|YP_004458889.1| - 0.051 13.6 0.1 0.12 12.3 0.1 1.7 1 0 0 1 1 1 0 SIS domain AlaDh_PNT_C PF01262.21 gi|332797389|ref|YP_004458889.1| - 0.088 12.1 1.1 0.16 11.2 1.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FdhD-NarQ PF02634.15 gi|332797390|ref|YP_004458890.1| - 3.3e-71 239.7 0.0 3.8e-71 239.5 0.0 1.0 1 0 0 1 1 1 1 FdhD/NarQ family DNA_pol3_beta PF00712.19 gi|332797390|ref|YP_004458890.1| - 0.082 13.0 0.2 0.57 10.3 0.0 2.2 2 0 0 2 2 2 0 DNA polymerase III beta subunit, N-terminal domain DUF1641 PF07849.11 gi|332797391|ref|YP_004458891.1| - 4.6e-12 45.6 0.1 8e-12 44.8 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1641) E2F_TDP PF02319.20 gi|332797391|ref|YP_004458891.1| - 0.088 12.9 0.1 0.16 12.0 0.1 1.6 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain Molybdopterin PF00384.22 gi|332797392|ref|YP_004458892.1| - 5.9e-88 295.7 0.0 7.7e-88 295.3 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|332797392|ref|YP_004458892.1| - 3.4e-21 75.3 0.0 2e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|332797392|ref|YP_004458892.1| - 1.1e-17 63.7 0.3 1.1e-17 63.7 0.3 2.2 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer2_4 PF13510.6 gi|332797392|ref|YP_004458892.1| - 6.5e-16 58.1 0.1 1.4e-15 57.0 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4 PF00037.27 gi|332797392|ref|YP_004458892.1| - 6.3e-11 41.6 18.9 4.4e-06 26.3 3.5 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|332797392|ref|YP_004458892.1| - 7.4e-09 35.0 0.3 7.4e-09 35.0 0.3 2.1 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Fer4_10 PF13237.6 gi|332797392|ref|YP_004458892.1| - 1.1e-08 35.1 7.2 0.00038 20.5 1.9 2.9 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|332797392|ref|YP_004458892.1| - 1.7e-08 34.5 6.5 1.7e-08 34.5 6.5 2.2 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332797392|ref|YP_004458892.1| - 1.6e-06 28.0 20.1 0.00027 20.9 3.3 3.1 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332797392|ref|YP_004458892.1| - 5e-06 27.0 10.1 5e-06 27.0 10.1 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer2 PF00111.27 gi|332797392|ref|YP_004458892.1| - 2e-05 24.5 3.7 3.9e-05 23.5 0.1 2.7 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain TPP_enzyme_M PF00205.22 gi|332797392|ref|YP_004458892.1| - 8.5e-05 22.3 0.1 0.87 9.3 0.0 3.1 3 0 0 3 3 3 2 Thiamine pyrophosphate enzyme, central domain Fer4_2 PF12797.7 gi|332797392|ref|YP_004458892.1| - 0.00013 21.8 21.5 0.01 15.9 6.1 3.5 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|332797392|ref|YP_004458892.1| - 0.00017 21.6 12.6 0.00017 21.6 12.6 3.6 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332797392|ref|YP_004458892.1| - 0.00076 20.4 15.5 0.034 15.1 5.6 3.8 3 1 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|332797392|ref|YP_004458892.1| - 0.0019 19.0 20.4 0.067 14.2 7.8 3.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|332797392|ref|YP_004458892.1| - 0.0047 17.4 6.2 0.6 10.7 0.2 2.8 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|332797392|ref|YP_004458892.1| - 0.036 14.3 11.9 0.062 13.5 0.5 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332797392|ref|YP_004458892.1| - 0.048 14.5 10.6 1.1 10.1 1.1 3.3 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332797392|ref|YP_004458892.1| - 0.049 14.4 5.1 0.93 10.3 1.5 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|332797392|ref|YP_004458892.1| - 0.074 13.5 17.7 0.021 15.3 11.7 2.8 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797392|ref|YP_004458892.1| - 0.11 13.1 16.6 0.43 11.1 12.3 3.1 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332797392|ref|YP_004458892.1| - 0.53 10.9 21.1 0.061 13.9 3.7 3.3 3 0 0 3 3 2 0 4Fe-4S binding domain DUF998 PF06197.13 gi|332797393|ref|YP_004458893.1| - 0.21 11.2 15.2 0.32 10.6 9.0 2.9 1 1 1 2 2 2 0 Protein of unknown function (DUF998) DUF16 PF01519.16 gi|332797395|ref|YP_004458895.1| - 2.9e-18 66.3 36.8 7.3e-06 26.4 5.9 5.3 1 1 4 5 5 5 5 Protein of unknown function DUF16 Fib_alpha PF08702.10 gi|332797395|ref|YP_004458895.1| - 1.2e-09 38.5 28.4 0.0083 16.3 1.3 5.2 1 1 4 5 5 5 3 Fibrinogen alpha/beta chain family ATG16 PF08614.11 gi|332797395|ref|YP_004458895.1| - 3.5e-09 37.2 31.0 8.8e-06 26.1 15.3 2.7 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) SlyX PF04102.12 gi|332797395|ref|YP_004458895.1| - 4.8e-09 36.7 28.0 0.0083 16.7 5.4 5.1 1 1 4 5 5 5 4 SlyX Lebercilin PF15619.6 gi|332797395|ref|YP_004458895.1| - 3.6e-08 33.3 27.1 0.00012 21.8 10.3 2.3 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease Cast PF10174.9 gi|332797395|ref|YP_004458895.1| - 1.3e-07 30.4 24.2 2.3e-07 29.5 24.2 1.4 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF3972 PF13118.6 gi|332797395|ref|YP_004458895.1| - 1.9e-07 31.6 31.3 0.0051 17.3 2.0 5.0 2 1 4 6 6 5 4 Protein of unknown function (DUF3972) AAA_13 PF13166.6 gi|332797395|ref|YP_004458895.1| - 4.8e-07 28.8 31.2 0.00014 20.7 15.0 2.2 1 1 1 2 2 2 2 AAA domain IKKbetaNEMObind PF12179.8 gi|332797395|ref|YP_004458895.1| - 6.8e-07 29.2 8.6 1.2 9.2 0.1 7.1 3 2 4 8 8 5 0 I-kappa-kinase-beta NEMO binding domain DUF948 PF06103.11 gi|332797395|ref|YP_004458895.1| - 1.9e-06 28.0 23.9 0.0057 16.9 5.7 3.6 1 1 4 5 5 5 4 Bacterial protein of unknown function (DUF948) Collagen_mid PF15984.5 gi|332797395|ref|YP_004458895.1| - 2e-06 27.7 10.8 0.00016 21.5 10.2 2.6 1 1 1 2 2 2 2 Bacterial collagen, middle region Spc29 PF17082.5 gi|332797395|ref|YP_004458895.1| - 2.8e-06 27.4 17.7 0.027 14.3 1.3 4.0 1 1 3 4 4 4 2 Spindle Pole Component 29 TMF_DNA_bd PF12329.8 gi|332797395|ref|YP_004458895.1| - 6e-06 26.2 46.3 0.0019 18.2 12.8 5.1 2 1 4 6 6 5 4 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.12 gi|332797395|ref|YP_004458895.1| - 1.1e-05 25.4 26.6 0.0067 16.5 7.6 3.3 1 1 2 3 3 3 3 Protein of unknown function (DUF1664) Fusion_gly PF00523.18 gi|332797395|ref|YP_004458895.1| - 1.7e-05 23.3 24.6 0.0069 14.7 2.8 4.1 1 1 3 4 4 4 3 Fusion glycoprotein F0 BRE1 PF08647.11 gi|332797395|ref|YP_004458895.1| - 1.9e-05 24.6 33.4 0.0091 16.1 11.4 3.6 1 1 3 4 4 4 4 BRE1 E3 ubiquitin ligase UPF0242 PF06785.11 gi|332797395|ref|YP_004458895.1| - 2.2e-05 24.7 28.7 0.0032 17.6 16.4 2.5 1 1 1 2 2 2 2 Uncharacterised protein family (UPF0242) N-terminus FliJ PF02050.16 gi|332797395|ref|YP_004458895.1| - 2.7e-05 24.4 29.4 0.23 11.7 7.3 4.1 1 1 3 4 4 4 3 Flagellar FliJ protein Prominin PF05478.11 gi|332797395|ref|YP_004458895.1| - 2.9e-05 22.3 17.8 4.1e-05 21.8 17.8 1.2 1 0 0 1 1 1 1 Prominin HOOK PF05622.12 gi|332797395|ref|YP_004458895.1| - 3.8e-05 22.1 29.0 0.0023 16.2 15.1 2.1 1 1 1 2 2 2 2 HOOK protein BORCS8 PF10167.9 gi|332797395|ref|YP_004458895.1| - 4e-05 23.5 16.5 0.023 14.6 2.1 3.4 1 1 2 3 3 3 2 BLOC-1-related complex sub-unit 8 HBM PF16591.5 gi|332797395|ref|YP_004458895.1| - 4.2e-05 23.1 22.8 0.0042 16.6 7.0 2.6 1 1 2 3 3 3 2 Helical bimodular sensor domain NPV_P10 PF05531.12 gi|332797395|ref|YP_004458895.1| - 5.3e-05 23.6 25.7 0.18 12.3 5.8 4.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|332797395|ref|YP_004458895.1| - 0.0001 20.6 27.7 0.014 13.6 1.7 2.6 1 1 2 3 3 3 3 Septation ring formation regulator, EzrA ADIP PF11559.8 gi|332797395|ref|YP_004458895.1| - 0.00019 21.6 30.3 0.021 14.9 6.8 3.1 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding TPR_14 PF13428.6 gi|332797395|ref|YP_004458895.1| - 0.00027 21.5 0.8 12 7.1 0.0 5.5 3 2 2 6 6 3 0 Tetratricopeptide repeat Spc7 PF08317.11 gi|332797395|ref|YP_004458895.1| - 0.00028 19.9 35.7 0.0065 15.4 17.4 2.3 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF2383 PF09537.10 gi|332797395|ref|YP_004458895.1| - 0.00029 21.1 20.2 2.9 8.3 2.0 5.5 1 1 3 4 4 4 0 Domain of unknown function (DUF2383) DUF3782 PF12644.7 gi|332797395|ref|YP_004458895.1| - 0.00036 20.6 19.3 0.0048 17.0 3.0 5.1 1 1 3 5 5 5 1 Protein of unknown function (DUF3782) TPR_MLP1_2 PF07926.12 gi|332797395|ref|YP_004458895.1| - 0.00037 20.6 38.1 0.027 14.6 9.3 3.6 1 1 2 3 3 3 2 TPR/MLP1/MLP2-like protein XhlA PF10779.9 gi|332797395|ref|YP_004458895.1| - 0.00042 20.5 23.0 0.028 14.6 0.9 4.8 1 1 4 5 5 5 2 Haemolysin XhlA ZapB PF06005.12 gi|332797395|ref|YP_004458895.1| - 0.00043 20.7 34.3 0.16 12.4 8.0 4.6 1 1 5 6 6 6 1 Cell division protein ZapB BAR_3 PF16746.5 gi|332797395|ref|YP_004458895.1| - 0.0005 19.8 19.0 0.012 15.3 11.1 3.0 1 1 1 2 2 2 1 BAR domain of APPL family BLOC1_2 PF10046.9 gi|332797395|ref|YP_004458895.1| - 0.00063 20.0 29.3 0.14 12.5 8.8 3.9 1 1 3 4 4 4 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fez1 PF06818.15 gi|332797395|ref|YP_004458895.1| - 0.00067 20.2 25.8 0.12 12.8 11.3 2.2 1 1 1 2 2 2 2 Fez1 CorA PF01544.18 gi|332797395|ref|YP_004458895.1| - 0.00071 19.0 12.2 0.0027 17.1 5.0 2.4 1 1 1 2 2 2 2 CorA-like Mg2+ transporter protein TPR_16 PF13432.6 gi|332797395|ref|YP_004458895.1| - 0.00073 20.1 0.8 29 5.4 0.1 5.6 3 2 3 6 6 5 0 Tetratricopeptide repeat FmiP_Thoc5 PF09766.9 gi|332797395|ref|YP_004458895.1| - 0.00077 18.9 25.9 0.055 12.7 5.4 3.4 1 1 3 4 4 4 2 Fms-interacting protein/Thoc5 TMPIT PF07851.13 gi|332797395|ref|YP_004458895.1| - 0.0008 18.7 28.4 0.043 13.1 6.4 3.0 1 1 2 3 3 3 2 TMPIT-like protein HrpB7 PF09486.10 gi|332797395|ref|YP_004458895.1| - 0.00084 19.8 24.0 0.002 18.5 17.0 2.2 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) FlaC_arch PF05377.11 gi|332797395|ref|YP_004458895.1| - 0.00093 19.5 21.1 3.1 8.3 0.0 5.5 1 1 5 6 6 6 0 Flagella accessory protein C (FlaC) HAP1_N PF04849.13 gi|332797395|ref|YP_004458895.1| - 0.00097 18.4 27.8 0.18 11.0 11.9 3.1 1 1 2 3 3 3 3 HAP1 N-terminal conserved region Prefoldin PF02996.17 gi|332797395|ref|YP_004458895.1| - 0.0012 18.7 32.6 0.074 13.0 1.7 5.2 1 1 4 5 5 5 2 Prefoldin subunit DUF812 PF05667.11 gi|332797395|ref|YP_004458895.1| - 0.0013 17.7 33.5 0.02 13.8 12.1 2.2 1 1 1 2 2 2 2 Protein of unknown function (DUF812) HMMR_N PF15905.5 gi|332797395|ref|YP_004458895.1| - 0.0016 18.0 32.0 0.26 10.7 18.7 2.5 1 1 1 2 2 2 2 Hyaluronan mediated motility receptor N-terminal Atg14 PF10186.9 gi|332797395|ref|YP_004458895.1| - 0.002 17.3 30.1 0.073 12.1 14.7 2.1 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Corona_S2 PF01601.16 gi|332797395|ref|YP_004458895.1| - 0.002 16.7 16.4 0.0061 15.1 6.1 2.8 1 1 2 3 3 3 1 Coronavirus S2 glycoprotein CENP-Q PF13094.6 gi|332797395|ref|YP_004458895.1| - 0.0026 18.0 27.8 0.22 11.7 4.2 3.8 1 1 3 4 4 4 1 CENP-Q, a CENPA-CAD centromere complex subunit Nup88 PF10168.9 gi|332797395|ref|YP_004458895.1| - 0.0028 15.6 22.8 0.0039 15.1 22.8 1.3 1 0 0 1 1 1 1 Nuclear pore component KASH_CCD PF14662.6 gi|332797395|ref|YP_004458895.1| - 0.0032 17.3 30.9 0.057 13.2 3.9 2.5 1 1 1 2 2 2 1 Coiled-coil region of CCDC155 or KASH DUF4175 PF13779.6 gi|332797395|ref|YP_004458895.1| - 0.0033 15.4 23.3 0.14 10.1 8.9 2.9 1 1 0 2 2 2 2 Domain of unknown function (DUF4175) APG17 PF04108.12 gi|332797395|ref|YP_004458895.1| - 0.0033 16.6 22.9 0.035 13.2 8.0 2.5 1 1 0 2 2 2 2 Autophagy protein Apg17 FlgN PF05130.12 gi|332797395|ref|YP_004458895.1| - 0.0035 17.9 32.8 0.022 15.3 15.4 2.5 1 1 2 3 3 3 2 FlgN protein GAS PF13851.6 gi|332797395|ref|YP_004458895.1| - 0.0037 16.6 28.3 0.0037 16.6 28.3 1.7 1 1 0 1 1 1 1 Growth-arrest specific micro-tubule binding Phage_HK97_TLTM PF06120.11 gi|332797395|ref|YP_004458895.1| - 0.0038 16.5 26.4 0.37 9.9 21.0 2.5 1 1 1 2 2 2 1 Tail length tape measure protein YkyA PF10368.9 gi|332797395|ref|YP_004458895.1| - 0.0045 16.7 33.1 0.069 12.8 17.0 2.9 1 1 1 2 2 2 1 Putative cell-wall binding lipoprotein GAT PF03127.14 gi|332797395|ref|YP_004458895.1| - 0.0046 17.2 16.2 0.054 13.8 3.9 4.7 1 1 2 3 3 3 1 GAT domain ERM PF00769.19 gi|332797395|ref|YP_004458895.1| - 0.0046 16.8 32.7 0.039 13.8 24.5 2.2 1 1 1 2 2 2 1 Ezrin/radixin/moesin family Dimerisation PF08100.11 gi|332797395|ref|YP_004458895.1| - 0.0054 16.7 4.2 1.1 9.3 0.1 3.8 1 1 3 4 4 2 0 Dimerisation domain TPR_11 PF13414.6 gi|332797395|ref|YP_004458895.1| - 0.0055 16.4 20.7 9.2 6.1 0.1 8.4 5 2 5 10 10 7 0 TPR repeat ANAPC5 PF12862.7 gi|332797395|ref|YP_004458895.1| - 0.0063 16.6 15.3 12 6.0 0.7 6.1 1 1 7 8 8 8 0 Anaphase-promoting complex subunit 5 DUF4795 PF16043.5 gi|332797395|ref|YP_004458895.1| - 0.0074 15.9 31.8 0.031 13.9 3.4 3.6 1 1 2 3 3 3 1 Domain of unknown function (DUF4795) ALIX_LYPXL_bnd PF13949.6 gi|332797395|ref|YP_004458895.1| - 0.0078 15.5 26.7 0.47 9.7 4.3 2.8 1 1 1 2 2 2 1 ALIX V-shaped domain binding to HIV Taxilin PF09728.9 gi|332797395|ref|YP_004458895.1| - 0.0082 15.4 28.1 0.13 11.4 16.6 2.5 1 1 1 2 2 2 1 Myosin-like coiled-coil protein USP8_interact PF08941.10 gi|332797395|ref|YP_004458895.1| - 0.0084 15.9 22.4 0.31 10.8 1.4 3.7 1 1 3 4 4 4 1 USP8 interacting DUF4763 PF15960.5 gi|332797395|ref|YP_004458895.1| - 0.0088 15.4 18.5 0.25 10.6 6.0 3.2 1 1 3 4 4 4 1 Domain of unknown function (DUF4763) MCPsignal PF00015.21 gi|332797395|ref|YP_004458895.1| - 0.0092 15.8 27.8 0.061 13.1 14.1 2.7 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Syntaxin-6_N PF09177.11 gi|332797395|ref|YP_004458895.1| - 0.0098 16.4 19.5 0.5 11.0 6.8 3.2 1 1 2 3 3 3 2 Syntaxin 6, N-terminal Bacillus_HBL PF05791.11 gi|332797395|ref|YP_004458895.1| - 0.012 15.5 27.6 0.31 10.8 7.7 3.5 1 1 4 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) DUF848 PF05852.11 gi|332797395|ref|YP_004458895.1| - 0.012 15.7 21.6 0.1 12.7 7.5 3.4 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) DUF3130 PF11328.8 gi|332797395|ref|YP_004458895.1| - 0.014 15.6 6.8 5.9 7.2 0.4 3.8 1 1 2 3 3 3 0 Protein of unknown function (DUF3130 DUF4988 PF16378.5 gi|332797395|ref|YP_004458895.1| - 0.018 14.7 18.0 0.43 10.2 0.9 4.3 1 1 5 6 6 6 0 Domain of unknown function DUF4407 PF14362.6 gi|332797395|ref|YP_004458895.1| - 0.022 14.1 27.6 0.57 9.5 15.6 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) RPW8 PF05659.11 gi|332797395|ref|YP_004458895.1| - 0.027 14.2 18.6 0.2 11.3 1.9 3.6 1 1 3 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 LZ3wCH PF18517.1 gi|332797395|ref|YP_004458895.1| - 0.031 14.4 6.3 22 5.2 0.1 4.7 3 1 1 4 4 4 0 Leucine zipper with capping helix domain DUF2959 PF11172.8 gi|332797395|ref|YP_004458895.1| - 0.031 14.4 20.0 0.1 12.7 13.3 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) PI3K_P85_iSH2 PF16454.5 gi|332797395|ref|YP_004458895.1| - 0.037 13.6 23.0 0.32 10.6 15.2 2.4 1 1 1 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain SCO1-SenC PF02630.14 gi|332797395|ref|YP_004458895.1| - 0.041 13.8 2.1 0.19 11.7 0.5 2.5 1 1 1 2 2 2 0 SCO1/SenC DUF3450 PF11932.8 gi|332797395|ref|YP_004458895.1| - 0.042 13.1 31.0 0.67 9.2 10.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) LXG PF04740.12 gi|332797395|ref|YP_004458895.1| - 0.043 13.5 24.9 1.9 8.1 0.3 3.4 1 1 0 2 2 2 0 LXG domain of WXG superfamily CC2-LZ PF16516.5 gi|332797395|ref|YP_004458895.1| - 0.046 14.1 28.2 0.7 10.3 4.8 4.4 1 1 3 4 4 4 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator Halo_GVPC PF05465.13 gi|332797395|ref|YP_004458895.1| - 0.047 13.9 3.0 57 4.1 0.0 4.8 4 1 1 5 5 4 0 Halobacterial gas vesicle protein C (GVPC) repeat Vps53_N PF04100.12 gi|332797395|ref|YP_004458895.1| - 0.048 12.6 26.7 0.14 11.1 9.9 2.5 1 1 2 3 3 3 0 Vps53-like, N-terminal CREPT PF16566.5 gi|332797395|ref|YP_004458895.1| - 0.05 13.8 23.2 0.43 10.8 9.8 2.9 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour DUF1296 PF06972.11 gi|332797395|ref|YP_004458895.1| - 0.054 13.6 8.9 4.3 7.5 0.2 5.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1296) Filament PF00038.21 gi|332797395|ref|YP_004458895.1| - 0.056 13.0 30.0 1.3 8.6 1.3 3.0 1 1 2 3 3 3 0 Intermediate filament protein Cauli_AT PF03233.13 gi|332797395|ref|YP_004458895.1| - 0.056 13.4 25.4 0.3 11.0 3.8 4.0 1 1 4 5 5 5 0 Aphid transmission protein TPR_1 PF00515.28 gi|332797395|ref|YP_004458895.1| - 0.063 13.1 7.4 83 3.3 0.0 6.4 5 2 2 7 7 4 0 Tetratricopeptide repeat Pinin_SDK_N PF04697.13 gi|332797395|ref|YP_004458895.1| - 0.069 13.8 18.9 3.4 8.3 0.1 5.2 3 1 2 5 5 5 0 pinin/SDK conserved region HemX PF04375.14 gi|332797395|ref|YP_004458895.1| - 0.069 12.4 35.3 0.53 9.5 8.7 3.1 1 1 2 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF641 PF04859.12 gi|332797395|ref|YP_004458895.1| - 0.072 13.4 29.0 1.9 8.8 4.2 4.1 1 1 1 2 2 1 0 Plant protein of unknown function (DUF641) COG5 PF10392.9 gi|332797395|ref|YP_004458895.1| - 0.073 13.3 22.1 1.5 9.0 8.6 3.2 1 1 2 3 3 3 0 Golgi transport complex subunit 5 SIKE PF05769.11 gi|332797395|ref|YP_004458895.1| - 0.077 12.9 28.4 1.1 9.2 10.4 2.3 1 1 1 2 2 2 0 SIKE family DUF4744 PF15918.5 gi|332797395|ref|YP_004458895.1| - 0.077 13.8 0.3 41 5.1 0.1 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4744) Phage_tail_NK PF16532.5 gi|332797395|ref|YP_004458895.1| - 0.077 12.6 3.0 14 5.3 0.1 3.1 2 1 1 3 3 3 0 Sf6-type phage tail needle knob or tip of some Caudovirales AATF-Che1 PF13339.6 gi|332797395|ref|YP_004458895.1| - 0.082 13.6 20.3 2.5e+03 -0.9 20.2 3.6 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor RmuC PF02646.16 gi|332797395|ref|YP_004458895.1| - 0.087 11.9 31.1 0.35 9.9 3.8 3.3 1 1 1 3 3 3 0 RmuC family PEP-utilisers_N PF05524.13 gi|332797395|ref|YP_004458895.1| - 0.094 12.9 21.4 0.064 13.4 10.1 3.6 1 1 2 3 3 2 0 PEP-utilising enzyme, N-terminal Csm1_N PF18504.1 gi|332797395|ref|YP_004458895.1| - 0.1 13.0 35.2 1.8 9.0 2.5 5.8 1 1 5 6 6 6 0 Csm1 N-terminal domain RsbU_N PF08673.10 gi|332797395|ref|YP_004458895.1| - 0.1 12.7 8.4 10 6.3 0.1 4.2 1 1 3 4 4 4 0 Phosphoserine phosphatase RsbU, N-terminal domain FH2 PF02181.23 gi|332797395|ref|YP_004458895.1| - 0.11 11.6 21.0 2.8 7.0 8.2 2.8 1 1 2 3 3 3 0 Formin Homology 2 Domain FliD_N PF02465.18 gi|332797395|ref|YP_004458895.1| - 0.11 13.2 23.7 0.46 11.2 4.2 3.8 1 1 2 3 3 3 0 Flagellar hook-associated protein 2 N-terminus ISG65-75 PF11727.8 gi|332797395|ref|YP_004458895.1| - 0.11 11.7 31.2 0.11 11.8 12.6 2.6 1 1 1 2 2 2 0 Invariant surface glycoprotein KLRAQ PF10205.9 gi|332797395|ref|YP_004458895.1| - 0.11 12.7 27.5 6.1 7.1 1.6 4.0 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein WEMBL PF05701.11 gi|332797395|ref|YP_004458895.1| - 0.13 11.0 35.2 0.3 9.7 35.2 1.5 1 1 0 1 1 1 0 Weak chloroplast movement under blue light OmpH PF03938.14 gi|332797395|ref|YP_004458895.1| - 0.13 12.6 40.0 14 6.0 24.3 3.1 2 1 1 3 3 2 0 Outer membrane protein (OmpH-like) DUF148 PF02520.17 gi|332797395|ref|YP_004458895.1| - 0.13 12.3 29.9 1.7 8.8 12.9 3.6 1 1 2 3 3 3 0 Domain of unknown function DUF148 DUF1759 PF03564.15 gi|332797395|ref|YP_004458895.1| - 0.15 12.0 16.9 1.2 9.0 0.8 3.6 2 1 2 4 4 3 0 Protein of unknown function (DUF1759) DUF4618 PF15397.6 gi|332797395|ref|YP_004458895.1| - 0.16 11.4 29.9 4.2 6.7 9.5 3.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4618) DUF1465 PF07323.12 gi|332797395|ref|YP_004458895.1| - 0.16 11.8 15.5 0.79 9.6 2.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF1465) AIP3 PF03915.13 gi|332797395|ref|YP_004458895.1| - 0.16 11.0 24.1 0.18 10.8 17.8 2.0 1 1 0 1 1 1 0 Actin interacting protein 3 TEX13 PF15186.6 gi|332797395|ref|YP_004458895.1| - 0.17 11.6 26.2 1.2 8.9 3.2 3.8 1 1 4 5 5 5 0 Testis-expressed sequence 13 protein family Tropomyosin_1 PF12718.7 gi|332797395|ref|YP_004458895.1| - 0.17 12.0 33.0 2.4 8.3 12.2 3.2 1 1 2 3 3 3 0 Tropomyosin like DUF5089 PF17002.5 gi|332797395|ref|YP_004458895.1| - 0.17 11.7 31.4 0.36 10.7 7.0 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF5089) TPR_12 PF13424.6 gi|332797395|ref|YP_004458895.1| - 0.19 12.1 9.9 13 6.1 0.1 5.3 2 1 4 6 6 4 0 Tetratricopeptide repeat TMP_2 PF06791.13 gi|332797395|ref|YP_004458895.1| - 0.2 11.3 20.8 0.12 12.1 4.0 2.3 1 1 1 2 2 2 0 Prophage tail length tape measure protein Sec8_exocyst PF04048.14 gi|332797395|ref|YP_004458895.1| - 0.22 11.4 22.7 2.1 8.2 2.6 3.3 1 1 2 3 3 3 0 Sec8 exocyst complex component specific domain DHR10 PF18595.1 gi|332797395|ref|YP_004458895.1| - 0.23 11.5 34.9 3.4 7.7 17.8 3.0 1 1 2 3 3 3 0 Designed helical repeat protein 10 domain DUF4201 PF13870.6 gi|332797395|ref|YP_004458895.1| - 0.24 11.1 27.0 1 9.0 13.2 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) YabA PF06156.13 gi|332797395|ref|YP_004458895.1| - 0.28 11.9 24.1 4.1 8.1 5.0 3.7 1 1 3 4 4 4 0 Initiation control protein YabA Med9 PF07544.13 gi|332797395|ref|YP_004458895.1| - 0.28 11.3 25.5 2.4 8.3 8.2 4.3 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 Sec34 PF04136.15 gi|332797395|ref|YP_004458895.1| - 0.29 11.0 21.3 0.26 11.2 4.0 3.7 1 1 4 5 5 4 0 Sec34-like family DUF5082 PF16888.5 gi|332797395|ref|YP_004458895.1| - 0.29 11.4 29.1 1.2 9.4 0.8 3.8 1 1 3 4 4 4 0 Domain of unknown function (DUF5082) Laminin_II PF06009.12 gi|332797395|ref|YP_004458895.1| - 0.32 11.0 28.9 0.11 12.5 6.3 3.4 1 1 2 3 3 3 0 Laminin Domain II Rab5-bind PF09311.11 gi|332797395|ref|YP_004458895.1| - 0.33 10.3 33.2 0.21 11.0 19.3 2.6 1 1 1 2 2 2 0 Rabaptin-like protein EMP24_GP25L PF01105.24 gi|332797395|ref|YP_004458895.1| - 0.34 10.8 16.9 1.8 8.5 1.1 3.6 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD HAUS-augmin3 PF14932.6 gi|332797395|ref|YP_004458895.1| - 0.37 10.3 30.5 1.8 8.1 15.9 2.1 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 3 DUF2201_N PF13203.6 gi|332797395|ref|YP_004458895.1| - 0.38 10.3 15.3 5.2 6.6 9.4 2.6 1 1 1 2 2 2 0 Putative metallopeptidase domain V_ATPase_I PF01496.19 gi|332797395|ref|YP_004458895.1| - 0.4 8.6 23.7 1.5e+02 0.0 23.6 2.0 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family SYCE1 PF15233.6 gi|332797395|ref|YP_004458895.1| - 0.41 10.7 31.5 1.1 9.3 12.6 2.7 1 1 2 3 3 3 0 Synaptonemal complex central element protein 1 Gp58 PF07902.11 gi|332797395|ref|YP_004458895.1| - 0.41 8.9 20.8 17 3.5 20.8 2.7 1 1 0 1 1 1 0 gp58-like protein TMF_TATA_bd PF12325.8 gi|332797395|ref|YP_004458895.1| - 0.43 10.8 28.4 4.9 7.4 9.4 3.2 1 1 2 3 3 3 0 TATA element modulatory factor 1 TATA binding Spectrin PF00435.21 gi|332797395|ref|YP_004458895.1| - 0.46 11.0 29.9 9.6 6.8 5.3 3.7 1 1 1 2 2 1 0 Spectrin repeat Viral_env_E26 PF11050.8 gi|332797395|ref|YP_004458895.1| - 0.51 9.7 8.5 1.2 8.4 2.2 2.4 1 1 1 2 2 2 0 Virus envelope protein E26 HicB_lk_antitox PF15919.5 gi|332797395|ref|YP_004458895.1| - 0.53 10.4 11.4 15 5.7 1.0 3.9 1 1 1 2 2 2 0 HicB_like antitoxin of bacterial toxin-antitoxin system ALMT PF11744.8 gi|332797395|ref|YP_004458895.1| - 0.53 9.1 22.3 2.8 6.7 6.3 2.0 1 1 1 2 2 2 0 Aluminium activated malate transporter Mce4_CUP1 PF11887.8 gi|332797395|ref|YP_004458895.1| - 0.54 9.7 9.6 0.81 9.1 7.3 2.0 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative H-kinase_dim PF02895.14 gi|332797395|ref|YP_004458895.1| - 0.54 10.7 23.0 1.8e+04 -10.3 23.0 5.1 1 1 0 1 1 0 0 Signal transducing histidine kinase, homodimeric domain ECM11 PF15463.6 gi|332797395|ref|YP_004458895.1| - 0.57 10.8 17.8 7.1 7.2 7.0 3.4 1 1 0 2 2 2 0 Extracellular mutant protein 11 DASH_Duo1 PF08651.10 gi|332797395|ref|YP_004458895.1| - 0.58 10.0 19.6 4.8 7.0 1.6 4.9 1 1 3 5 5 5 0 DASH complex subunit Duo1 DUF3584 PF12128.8 gi|332797395|ref|YP_004458895.1| - 0.6 7.5 28.9 1.1 6.7 28.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Serine_rich PF08824.10 gi|332797395|ref|YP_004458895.1| - 0.63 10.0 14.5 3.9 7.4 7.5 3.5 1 1 3 4 4 4 0 Serine rich protein interaction domain DUF3818 PF12825.7 gi|332797395|ref|YP_004458895.1| - 0.67 8.9 22.3 1.8 7.5 12.0 3.7 1 1 2 3 3 3 0 Domain of unknown function in PX-proteins (DUF3818) TACC_C PF05010.14 gi|332797395|ref|YP_004458895.1| - 0.74 9.6 28.2 0.93 9.2 17.6 2.6 1 1 1 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal TMEM192 PF14802.6 gi|332797395|ref|YP_004458895.1| - 0.78 8.8 24.4 1.9 7.6 1.5 5.4 1 1 4 5 5 5 0 TMEM192 family PRTP PF01366.18 gi|332797395|ref|YP_004458895.1| - 0.8 7.7 14.5 1.3 7.0 5.1 2.0 1 1 1 2 2 2 0 Herpesvirus processing and transport protein CK2S PF15011.6 gi|332797395|ref|YP_004458895.1| - 0.83 9.5 17.6 0.53 10.2 1.0 2.8 1 1 2 3 3 3 0 Casein Kinase 2 substrate Tweety PF04906.13 gi|332797395|ref|YP_004458895.1| - 0.86 8.2 17.9 0.69 8.5 6.0 2.3 1 1 1 2 2 2 0 Tweety DUF724 PF05266.14 gi|332797395|ref|YP_004458895.1| - 0.88 9.4 30.2 2 8.2 8.0 2.9 1 1 3 4 4 4 0 Protein of unknown function (DUF724) DUF1910 PF08928.10 gi|332797395|ref|YP_004458895.1| - 0.96 9.5 12.4 5.3 7.1 0.5 4.3 1 1 2 3 3 3 0 Domain of unknown function (DUF1910) TolA_bind_tri PF16331.5 gi|332797395|ref|YP_004458895.1| - 1 9.5 22.0 2.5 8.2 3.1 4.0 1 1 2 3 3 3 0 TolA binding protein trimerisation Mad3_BUB1_I_2 PF17014.5 gi|332797395|ref|YP_004458895.1| - 1 9.5 19.5 2.6 8.2 0.5 4.8 2 1 3 5 5 4 0 Putative Mad3/BUB1 like region 1 protein PMEI PF04043.15 gi|332797395|ref|YP_004458895.1| - 1 9.7 12.2 3.7e+02 1.4 12.2 2.5 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor NOG1_N PF17835.1 gi|332797395|ref|YP_004458895.1| - 1.1 9.2 15.0 3.9 7.4 2.2 3.3 1 1 2 3 3 3 0 NOG1 N-terminal helical domain DUF5593 PF18007.1 gi|332797395|ref|YP_004458895.1| - 1.2 9.9 11.4 19 6.1 2.0 4.0 1 1 3 4 4 4 0 Domain of unknown function (DUF5593) CPG4 PF15481.6 gi|332797395|ref|YP_004458895.1| - 1.2 9.8 3.0 7 7.4 0.5 2.7 1 1 2 3 3 3 0 Chondroitin proteoglycan 4 MT0933_antitox PF14013.6 gi|332797395|ref|YP_004458895.1| - 1.2 9.5 18.2 21 5.5 1.6 6.3 3 2 3 6 6 4 0 MT0933-like antitoxin protein FAA_hydro_N_2 PF18288.1 gi|332797395|ref|YP_004458895.1| - 1.3 9.5 10.3 13 6.2 0.2 3.8 1 1 2 3 3 3 0 Fumarylacetoacetase N-terminal domain 2 Sec20 PF03908.13 gi|332797395|ref|YP_004458895.1| - 1.3 9.0 17.8 6 6.9 1.3 4.0 1 1 1 3 3 3 0 Sec20 Phage_GPO PF05929.11 gi|332797395|ref|YP_004458895.1| - 1.4 8.5 27.3 6.9 6.2 13.5 2.6 1 1 1 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DivIC PF04977.15 gi|332797395|ref|YP_004458895.1| - 1.4 8.7 32.6 0.42 10.4 2.6 5.1 1 1 1 3 3 2 0 Septum formation initiator GCP_N_terminal PF17681.1 gi|332797395|ref|YP_004458895.1| - 1.5 8.4 12.2 1.4 8.4 4.1 2.2 1 1 1 2 2 2 0 Gamma tubulin complex component N-terminal Nsp1_C PF05064.13 gi|332797395|ref|YP_004458895.1| - 1.6 8.6 21.3 9.5 6.1 2.1 3.5 1 1 2 3 3 3 0 Nsp1-like C-terminal region COMP PF11598.8 gi|332797395|ref|YP_004458895.1| - 1.7 9.2 11.3 6.8 7.2 0.7 4.6 2 1 2 5 5 3 0 Cartilage oligomeric matrix protein DUF2379 PF09543.10 gi|332797395|ref|YP_004458895.1| - 1.7 8.9 15.7 3.3 7.9 4.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) CALCOCO1 PF07888.11 gi|332797395|ref|YP_004458895.1| - 1.7 7.4 27.4 11 4.8 17.4 1.9 1 1 1 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Retrotrans_gag PF03732.17 gi|332797395|ref|YP_004458895.1| - 1.8 8.9 6.6 8.1 6.8 0.2 3.2 1 1 0 2 2 2 0 Retrotransposon gag protein YscO PF07321.12 gi|332797395|ref|YP_004458895.1| - 1.8 8.5 34.0 1.5 8.7 4.9 3.3 1 1 2 3 3 3 0 Type III secretion protein YscO SpecificRecomb PF10136.9 gi|332797395|ref|YP_004458895.1| - 1.8 6.8 15.2 3.5 5.8 15.2 1.5 1 1 0 1 1 1 0 Site-specific recombinase Lectin_N PF03954.14 gi|332797395|ref|YP_004458895.1| - 1.8 8.3 19.2 1.3 8.8 4.4 3.3 1 1 2 3 3 3 0 Hepatic lectin, N-terminal domain EPO_TPO PF00758.18 gi|332797395|ref|YP_004458895.1| - 2.4 8.2 13.6 1.1 9.2 2.2 3.4 1 1 1 2 2 2 0 Erythropoietin/thrombopoietin DUF2203 PF09969.9 gi|332797395|ref|YP_004458895.1| - 2.4 8.9 25.2 5.3 7.8 5.6 3.4 1 1 2 3 3 3 0 Uncharacterized conserved protein (DUF2203) GLTP PF08718.11 gi|332797395|ref|YP_004458895.1| - 2.5 8.3 14.5 13 6.0 0.4 3.5 1 1 1 2 2 2 0 Glycolipid transfer protein (GLTP) Occludin_ELL PF07303.13 gi|332797395|ref|YP_004458895.1| - 2.7 8.8 13.5 13 6.6 1.6 3.8 1 1 2 3 3 3 0 Occludin homology domain HIP1_clath_bdg PF16515.5 gi|332797395|ref|YP_004458895.1| - 2.8 8.6 31.9 6.4 7.5 5.4 3.5 1 1 2 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 zf-C4H2 PF10146.9 gi|332797395|ref|YP_004458895.1| - 2.9 8.1 23.9 28 4.9 14.3 2.5 1 1 1 2 2 2 0 Zinc finger-containing protein PTRF_SDPR PF15237.6 gi|332797395|ref|YP_004458895.1| - 3.1 7.4 28.8 2.3 7.8 1.4 3.2 1 1 2 3 3 3 0 PTRF/SDPR family DUF4298 PF14131.6 gi|332797395|ref|YP_004458895.1| - 3.4 7.7 21.3 2.9 7.9 1.3 5.1 1 1 0 2 2 1 0 Domain of unknown function (DUF4298) DUF2570 PF10828.8 gi|332797395|ref|YP_004458895.1| - 3.5 7.5 33.4 0.8 9.6 5.9 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF2570) She9_MDM33 PF05546.11 gi|332797395|ref|YP_004458895.1| - 3.5 7.4 22.7 0.081 12.7 5.1 3.1 1 1 2 3 3 2 0 She9 / Mdm33 family KxDL PF10241.9 gi|332797395|ref|YP_004458895.1| - 3.9 7.8 23.3 19 5.6 5.5 3.7 1 1 2 3 3 3 0 Uncharacterized conserved protein Striatin PF08232.12 gi|332797395|ref|YP_004458895.1| - 4 8.0 22.3 8.5 7.0 14.9 2.6 1 1 1 2 2 2 0 Striatin family MAD PF05557.13 gi|332797395|ref|YP_004458895.1| - 4.1 5.6 30.9 1.3 7.3 6.9 2.3 1 1 2 3 3 3 0 Mitotic checkpoint protein LemA PF04011.12 gi|332797395|ref|YP_004458895.1| - 4.4 7.2 18.0 0.62 9.9 5.3 2.7 1 1 1 2 2 2 0 LemA family Trimer_CC PF08954.11 gi|332797395|ref|YP_004458895.1| - 4.8 6.8 19.2 6.5 6.4 1.8 5.2 1 1 3 4 4 3 0 Trimerisation motif ATG_C PF09333.11 gi|332797395|ref|YP_004458895.1| - 4.8 7.6 17.4 9.7 6.6 3.0 4.3 1 1 1 2 2 1 0 Autophagy-related protein C terminal domain WHEP-TRS PF00458.20 gi|332797395|ref|YP_004458895.1| - 5 7.4 25.5 19 5.5 0.3 6.2 4 1 1 5 5 5 0 WHEP-TRS domain Mod_r PF07200.13 gi|332797395|ref|YP_004458895.1| - 5 7.2 28.9 12 6.0 10.4 3.0 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein HMG_box_2 PF09011.10 gi|332797395|ref|YP_004458895.1| - 5 7.8 8.3 22 5.8 0.2 4.0 1 1 2 4 4 4 0 HMG-box domain KELK PF15796.5 gi|332797395|ref|YP_004458895.1| - 5.1 7.6 27.6 6 7.4 4.9 4.0 1 1 4 5 5 5 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF3232 PF11554.8 gi|332797395|ref|YP_004458895.1| - 5.5 7.4 12.0 44 4.5 1.6 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF3232) DUF2400 PF09674.10 gi|332797395|ref|YP_004458895.1| - 6.1 6.8 13.7 6.5 6.7 1.6 3.2 1 1 2 3 3 2 0 Protein of unknown function (DUF2400) RasGAP_C PF03836.15 gi|332797395|ref|YP_004458895.1| - 6.1 7.0 22.1 23 5.1 8.6 3.3 1 1 1 2 2 2 0 RasGAP C-terminus Golgin_A5 PF09787.9 gi|332797395|ref|YP_004458895.1| - 6.4 6.2 29.4 2.5e+02 0.9 29.4 2.2 1 1 0 1 1 1 0 Golgin subfamily A member 5 CRR7 PF12095.8 gi|332797395|ref|YP_004458895.1| - 6.7 7.2 15.2 6.5 7.3 0.2 4.3 1 1 2 4 4 4 0 Protein CHLORORESPIRATORY REDUCTION 7 FUSC PF04632.12 gi|332797395|ref|YP_004458895.1| - 6.8 5.1 9.8 33 2.8 9.0 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family FAM76 PF16046.5 gi|332797395|ref|YP_004458895.1| - 7.1 5.9 27.7 5.1 6.4 12.6 2.3 1 1 1 2 2 2 0 FAM76 protein P4Ha_N PF08336.11 gi|332797395|ref|YP_004458895.1| - 7.3 6.6 20.3 18 5.4 3.8 4.3 1 1 2 3 3 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region CENP-H PF05837.12 gi|332797395|ref|YP_004458895.1| - 7.9 6.9 30.7 4 7.9 12.0 2.9 1 1 1 2 2 2 0 Centromere protein H (CENP-H) DUF2625 PF10946.8 gi|332797395|ref|YP_004458895.1| - 7.9 5.5 8.2 1.9 7.5 3.2 2.3 1 1 1 2 2 2 0 Protein of unknown function DUF2625 CmlA_N PF18456.1 gi|332797395|ref|YP_004458895.1| - 8.2 5.6 18.4 4.4 6.5 1.3 3.7 1 1 3 4 4 4 0 Diiron non-heme beta-hydroxylase N-terminal domain Seryl_tRNA_N PF02403.22 gi|332797395|ref|YP_004458895.1| - 8.4 6.7 39.9 4.2 7.6 9.4 3.9 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain Glyco_transf_18 PF15024.6 gi|332797395|ref|YP_004458895.1| - 9.4 4.7 9.6 0.54 8.8 1.8 2.2 1 1 0 2 2 2 0 Glycosyltransferase family 18 AA_permease PF00324.21 gi|332797396|ref|YP_004458896.1| - 6.8e-44 150.3 49.9 8.1e-44 150.0 49.9 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|332797396|ref|YP_004458896.1| - 1.8e-38 132.5 54.1 2.2e-38 132.2 54.1 1.0 1 0 0 1 1 1 1 Amino acid permease Sugar_tr PF00083.24 gi|332797397|ref|YP_004458897.1| - 7.3e-42 143.8 24.4 8.5e-42 143.5 24.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332797397|ref|YP_004458897.1| - 1.7e-34 119.4 47.6 1.7e-33 116.1 26.6 1.7 1 1 1 2 2 2 2 Major Facilitator Superfamily NPCBM_assoc PF10633.9 gi|332797398|ref|YP_004458898.1| - 0.0017 18.5 0.0 0.0023 18.1 0.0 1.2 1 0 0 1 1 1 1 NPCBM-associated, NEW3 domain of alpha-galactosidase AA_permease_2 PF13520.6 gi|332797400|ref|YP_004458900.1| - 3.2e-41 141.6 53.5 3.8e-41 141.3 53.5 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332797400|ref|YP_004458900.1| - 2.8e-38 131.7 49.1 3.8e-38 131.3 49.1 1.1 1 0 0 1 1 1 1 Amino acid permease PaREP1 PF05942.11 gi|332797401|ref|YP_004458901.1| - 2.7e-33 114.3 3.9 2.7e-33 114.3 3.9 1.7 2 1 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797401|ref|YP_004458901.1| - 0.00081 19.4 0.3 0.0043 17.1 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF357) FliS PF02561.14 gi|332797401|ref|YP_004458901.1| - 0.0027 18.0 1.2 0.016 15.4 0.7 2.0 2 0 0 2 2 2 1 Flagellar protein FliS YfdX PF10938.8 gi|332797401|ref|YP_004458901.1| - 0.01 15.8 1.0 0.17 11.8 0.8 2.1 2 0 0 2 2 2 0 YfdX protein DUF4175 PF13779.6 gi|332797401|ref|YP_004458901.1| - 0.17 9.8 0.6 0.19 9.6 0.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) HEPN PF05168.14 gi|332797401|ref|YP_004458901.1| - 0.28 11.3 10.3 4.7 7.4 8.5 2.8 2 1 0 2 2 2 0 HEPN domain CRISPR_Cas6 PF10040.9 gi|332797402|ref|YP_004458902.1| - 7e-09 36.2 0.0 1.2e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 Cas_Cas6 PF01881.16 gi|332797402|ref|YP_004458902.1| - 0.016 15.7 0.2 0.065 13.8 0.0 2.1 1 1 1 2 2 2 0 CRISPR associated protein Cas6 ZYG-11_interact PF05884.12 gi|332797403|ref|YP_004458903.1| - 0.02 14.3 0.1 0.023 14.1 0.1 1.0 1 0 0 1 1 1 0 Interactor of ZYG-11 ComZ PF10815.8 gi|332797403|ref|YP_004458903.1| - 0.042 13.8 0.1 0.058 13.4 0.1 1.2 1 0 0 1 1 1 0 ComZ Arg_repressor PF01316.21 gi|332797403|ref|YP_004458903.1| - 0.049 13.4 0.7 0.086 12.6 0.5 1.5 1 1 0 1 1 1 0 Arginine repressor, DNA binding domain PIN PF01850.21 gi|332797404|ref|YP_004458904.1| - 2.1e-07 31.5 0.0 2.3e-07 31.3 0.0 1.0 1 0 0 1 1 1 1 PIN domain PaREP1 PF05942.11 gi|332797405|ref|YP_004458905.1| - 1.9e-36 124.5 4.2 1.9e-36 124.5 4.2 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797405|ref|YP_004458905.1| - 0.0013 18.7 0.3 0.003 17.6 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF357) DUF5618 PF18498.1 gi|332797405|ref|YP_004458905.1| - 0.0026 17.9 1.7 0.0057 16.9 1.7 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF5618) FliS PF02561.14 gi|332797405|ref|YP_004458905.1| - 0.0038 17.5 0.5 0.0067 16.7 0.5 1.4 1 0 0 1 1 1 1 Flagellar protein FliS DUF4175 PF13779.6 gi|332797405|ref|YP_004458905.1| - 0.11 10.4 0.3 0.13 10.2 0.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) DUF5362 PF17319.2 gi|332797406|ref|YP_004458906.1| - 0.00037 20.3 2.2 0.00053 19.8 2.2 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF5362) Tetraspanin PF00335.20 gi|332797406|ref|YP_004458906.1| - 0.14 11.8 0.3 0.18 11.5 0.3 1.1 1 0 0 1 1 1 0 Tetraspanin family DUF3139 PF11337.8 gi|332797406|ref|YP_004458906.1| - 0.24 12.1 1.0 2.8 8.7 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3139) ABC2_membrane_2 PF12679.7 gi|332797407|ref|YP_004458907.1| - 1.9e-13 50.3 14.8 2.9e-13 49.8 14.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|332797407|ref|YP_004458907.1| - 2.4e-06 26.9 39.1 2.4e-06 26.9 39.1 1.6 2 1 0 2 2 2 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.6 gi|332797407|ref|YP_004458907.1| - 0.00092 19.4 0.0 0.0017 18.6 0.0 1.4 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Asp4 PF16996.5 gi|332797407|ref|YP_004458907.1| - 0.097 12.5 0.4 0.7 9.7 0.5 2.4 2 0 0 2 2 2 0 Accessory secretory protein Sec Asp4 CarbopepD_reg_2 PF13715.6 gi|332797407|ref|YP_004458907.1| - 0.12 12.4 0.1 0.23 11.5 0.1 1.5 1 0 0 1 1 1 0 CarboxypepD_reg-like domain ABC2_membrane_4 PF12730.7 gi|332797407|ref|YP_004458907.1| - 0.47 10.4 24.1 0.016 15.2 15.7 2.6 2 1 1 3 3 3 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|332797408|ref|YP_004458908.1| - 3.4e-23 82.7 0.0 9e-23 81.3 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|332797408|ref|YP_004458908.1| - 9.6e-11 42.0 0.7 8.2e-06 25.8 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SRP54 PF00448.22 gi|332797408|ref|YP_004458908.1| - 0.00077 19.1 0.2 0.011 15.4 0.0 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|332797408|ref|YP_004458908.1| - 0.0046 17.5 0.3 0.013 16.0 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|332797408|ref|YP_004458908.1| - 0.057 13.2 0.1 0.15 11.8 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|332797408|ref|YP_004458908.1| - 0.11 13.2 0.5 0.25 12.1 0.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_33 PF13671.6 gi|332797408|ref|YP_004458908.1| - 0.17 12.0 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332797408|ref|YP_004458908.1| - 0.23 11.2 0.0 0.49 10.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Fe_dep_repress PF01325.19 gi|332797409|ref|YP_004458909.1| - 0.00047 20.3 0.0 0.0014 18.8 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|332797409|ref|YP_004458909.1| - 0.0067 16.3 0.0 0.017 15.0 0.0 1.6 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.16 gi|332797409|ref|YP_004458909.1| - 0.0073 16.7 0.0 0.014 15.8 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor TrmB PF01978.19 gi|332797409|ref|YP_004458909.1| - 0.0083 16.0 0.0 0.017 15.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|332797409|ref|YP_004458909.1| - 0.0094 15.9 0.1 0.015 15.2 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_Crp_2 PF13545.6 gi|332797409|ref|YP_004458909.1| - 0.011 15.7 0.0 0.026 14.5 0.0 1.7 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_54 PF18607.1 gi|332797409|ref|YP_004458909.1| - 0.029 14.4 0.1 0.048 13.7 0.1 1.4 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_11 PF08279.12 gi|332797409|ref|YP_004458909.1| - 0.034 14.1 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|332797409|ref|YP_004458909.1| - 0.035 14.5 0.0 0.061 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF1884 PF08967.10 gi|332797409|ref|YP_004458909.1| - 0.035 14.3 0.8 0.073 13.3 0.8 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1884) NatB_MDM20 PF09797.9 gi|332797409|ref|YP_004458909.1| - 0.061 12.3 0.1 0.074 12.0 0.1 1.1 1 0 0 1 1 1 0 N-acetyltransferase B complex (NatB) non catalytic subunit HTH_6 PF01418.17 gi|332797409|ref|YP_004458909.1| - 0.063 13.3 0.1 0.21 11.6 0.1 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family MSP PF01716.18 gi|332797409|ref|YP_004458909.1| - 0.063 12.5 0.1 0.079 12.1 0.1 1.1 1 0 0 1 1 1 0 Manganese-stabilising protein / photosystem II polypeptide HTH_19 PF12844.7 gi|332797409|ref|YP_004458909.1| - 0.086 12.9 0.2 12 6.0 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|332797409|ref|YP_004458909.1| - 0.089 12.4 0.1 0.52 9.9 0.1 2.3 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332797409|ref|YP_004458909.1| - 0.095 12.6 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF1217 PF06748.12 gi|332797409|ref|YP_004458909.1| - 0.1 12.7 0.1 0.17 11.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1217) HTH_28 PF13518.6 gi|332797409|ref|YP_004458909.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|332797409|ref|YP_004458909.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Transp_cyt_pur PF02133.15 gi|332797411|ref|YP_004458911.1| - 1.8e-10 40.2 37.2 2.5e-10 39.7 35.6 1.9 1 1 0 1 1 1 1 Permease for cytosine/purines, uracil, thiamine, allantoin PIN PF01850.21 gi|332797412|ref|YP_004458912.1| - 3.4e-06 27.6 0.1 4.6e-06 27.1 0.1 1.2 1 0 0 1 1 1 1 PIN domain Aldo_ket_red PF00248.21 gi|332797412|ref|YP_004458912.1| - 0.0045 16.2 0.0 0.0058 15.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family CcdA PF07362.12 gi|332797413|ref|YP_004458913.1| - 5.5e-05 23.5 5.3 0.00016 22.0 5.3 1.8 1 1 0 1 1 1 1 Post-segregation antitoxin CcdA DUF4145 PF13643.6 gi|332797413|ref|YP_004458913.1| - 0.00013 22.0 1.1 0.00015 21.8 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4145) YqaH PF17448.2 gi|332797413|ref|YP_004458913.1| - 0.00016 21.9 1.7 0.00019 21.7 1.7 1.1 1 0 0 1 1 1 1 Uncharacterized YqaH-like Ran-binding PF05508.11 gi|332797413|ref|YP_004458913.1| - 0.0011 18.0 2.9 0.0013 17.8 2.9 1.0 1 0 0 1 1 1 1 RanGTP-binding protein YtxH PF12732.7 gi|332797413|ref|YP_004458913.1| - 0.0012 19.4 6.3 0.0016 19.0 6.3 1.1 1 0 0 1 1 1 1 YtxH-like protein PSK_trans_fac PF07704.11 gi|332797413|ref|YP_004458913.1| - 0.0019 18.9 4.9 0.0023 18.7 4.9 1.2 1 0 0 1 1 1 1 Rv0623-like transcription factor DUF3347 PF11827.8 gi|332797413|ref|YP_004458913.1| - 0.014 15.6 3.4 0.016 15.4 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DUF816 PF05674.12 gi|332797413|ref|YP_004458913.1| - 0.041 13.8 1.3 0.048 13.6 1.3 1.0 1 0 0 1 1 1 0 Baculovirus protein of unknown function (DUF816) ATPase PF06745.13 gi|332797413|ref|YP_004458913.1| - 0.05 12.9 2.1 0.051 12.9 2.1 1.0 1 0 0 1 1 1 0 KaiC DUF2228 PF10228.9 gi|332797413|ref|YP_004458913.1| - 0.069 12.9 1.0 0.065 13.0 1.0 1.0 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) Dynein_light PF01221.18 gi|332797413|ref|YP_004458913.1| - 0.07 13.4 2.3 0.088 13.1 2.3 1.3 1 1 0 1 1 1 0 Dynein light chain type 1 RHH_3 PF12651.7 gi|332797413|ref|YP_004458913.1| - 0.085 12.8 3.7 0.42 10.6 1.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix domain YpjP PF14005.6 gi|332797413|ref|YP_004458913.1| - 0.094 12.8 2.5 0.097 12.7 2.5 1.1 1 0 0 1 1 1 0 YpjP-like protein Prominin PF05478.11 gi|332797413|ref|YP_004458913.1| - 0.097 10.6 1.0 0.099 10.6 1.0 1.0 1 0 0 1 1 1 0 Prominin TnsD PF15978.5 gi|332797413|ref|YP_004458913.1| - 0.11 11.4 3.1 0.12 11.3 3.1 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D HMG_box_2 PF09011.10 gi|332797413|ref|YP_004458913.1| - 0.12 12.9 5.1 0.13 12.9 4.2 1.5 1 1 0 1 1 1 0 HMG-box domain VSG_B PF13206.6 gi|332797413|ref|YP_004458913.1| - 0.13 11.5 2.2 0.13 11.5 2.2 1.1 1 0 0 1 1 1 0 Trypanosomal VSG domain HSP70 PF00012.20 gi|332797413|ref|YP_004458913.1| - 0.29 9.3 5.7 0.32 9.1 5.7 1.0 1 0 0 1 1 1 0 Hsp70 protein Histone_HNS PF00816.21 gi|332797413|ref|YP_004458913.1| - 0.32 11.8 7.1 2.7 8.9 4.2 2.1 1 1 1 2 2 2 0 H-NS histone family DUF1003 PF06210.11 gi|332797413|ref|YP_004458913.1| - 0.37 10.9 2.5 0.46 10.6 2.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1003) YojJ PF10372.9 gi|332797413|ref|YP_004458913.1| - 0.71 10.0 4.7 0.54 10.4 2.4 1.8 1 1 1 2 2 2 0 Bacterial membrane-spanning protein N-terminus DUF1367 PF07105.11 gi|332797414|ref|YP_004458914.1| - 0.0013 18.4 0.0 0.0015 18.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1367) Cas6_N PF17952.1 gi|332797415|ref|YP_004458915.1| - 1.3e-35 122.2 0.2 2.2e-35 121.3 0.2 1.4 1 0 0 1 1 1 1 Cas6 N-terminal domain CRISPR_Cas6 PF10040.9 gi|332797415|ref|YP_004458915.1| - 9.1e-12 45.5 0.1 2e-11 44.3 0.1 1.6 1 0 0 1 1 1 1 CRISPR-associated endoribonuclease Cas6 HD_6 PF18019.1 gi|332797417|ref|YP_004458917.1| - 1e-06 29.0 0.0 1.4e-06 28.5 0.0 1.2 1 0 0 1 1 1 1 HD domain TFIID_30kDa PF03540.13 gi|332797417|ref|YP_004458917.1| - 0.013 15.5 0.0 3 7.9 0.0 2.6 2 0 0 2 2 2 0 Transcription initiation factor TFIID 23-30kDa subunit HD PF01966.22 gi|332797417|ref|YP_004458917.1| - 0.026 14.8 0.5 0.053 13.8 0.5 1.8 1 1 0 1 1 1 0 HD domain DUF4105 PF13387.6 gi|332797417|ref|YP_004458917.1| - 0.074 12.7 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4105) Syntaxin PF00804.25 gi|332797417|ref|YP_004458917.1| - 0.08 12.6 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Syntaxin DEAD PF00270.29 gi|332797418|ref|YP_004458918.1| - 1.6e-10 41.0 0.0 6.8e-10 39.0 0.0 2.0 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|332797418|ref|YP_004458918.1| - 1.2e-08 35.3 0.5 4.8e-08 33.3 0.2 2.1 1 1 1 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|332797418|ref|YP_004458918.1| - 1.5e-05 25.0 0.0 3.9e-05 23.7 0.0 1.6 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit RuvB_N PF05496.12 gi|332797418|ref|YP_004458918.1| - 0.0038 17.0 0.0 0.0078 16.0 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|332797418|ref|YP_004458918.1| - 0.0058 16.9 0.0 0.059 13.7 0.0 2.4 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|332797418|ref|YP_004458918.1| - 0.0069 16.1 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein TsaE PF02367.17 gi|332797418|ref|YP_004458918.1| - 0.0092 16.0 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|332797418|ref|YP_004458918.1| - 0.019 15.4 0.2 0.28 11.6 0.2 2.5 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|332797418|ref|YP_004458918.1| - 0.027 13.6 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_16 PF13191.6 gi|332797418|ref|YP_004458918.1| - 0.048 14.0 0.0 0.72 10.2 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain ABC_tran PF00005.27 gi|332797418|ref|YP_004458918.1| - 0.077 13.5 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 ABC transporter Cas_Cas5d PF09704.10 gi|332797419|ref|YP_004458919.1| - 6.2e-06 26.2 0.1 1.6e-05 24.9 0.1 1.7 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DevR PF01905.16 gi|332797420|ref|YP_004458920.1| - 1.5e-76 257.0 0.0 1.9e-76 256.7 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated negative auto-regulator DevR/Csa2 BRCA2 PF00634.18 gi|332797420|ref|YP_004458920.1| - 0.046 13.4 0.5 0.1 12.3 0.5 1.5 1 0 0 1 1 1 0 BRCA2 repeat Cas_Csa5 PF09702.10 gi|332797421|ref|YP_004458921.1| - 5.9e-54 180.8 1.8 7.7e-54 180.5 1.8 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Csa5) PA PF02225.22 gi|332797421|ref|YP_004458921.1| - 0.039 14.0 0.1 5.7 7.0 0.0 2.1 1 1 1 2 2 2 0 PA domain DUF5601 PF18151.1 gi|332797421|ref|YP_004458921.1| - 0.13 12.6 0.0 0.21 11.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5601) HTH_24 PF13412.6 gi|332797422|ref|YP_004458922.1| - 7.2e-05 22.3 0.1 0.0002 20.9 0.1 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|332797422|ref|YP_004458922.1| - 0.01 15.8 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain Cas_APE2256 PF09651.10 gi|332797422|ref|YP_004458922.1| - 0.024 14.5 0.1 0.038 13.9 0.1 1.5 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_APE2256) RuvB_C PF05491.13 gi|332797422|ref|YP_004458922.1| - 0.061 13.2 0.4 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 RuvB C-terminal winged helix domain Csa1 PF06023.12 gi|332797423|ref|YP_004458923.1| - 9.3e-98 327.2 0.0 1.2e-97 326.8 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated exonuclease Csa1 PDDEXK_1 PF12705.7 gi|332797423|ref|YP_004458923.1| - 0.00015 21.8 0.0 0.001 19.0 0.0 1.9 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UPF0014 PF03649.13 gi|332797423|ref|YP_004458923.1| - 0.017 14.5 0.1 0.22 10.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0014) Cas_Cas1 PF01867.16 gi|332797424|ref|YP_004458924.1| - 9.3e-45 152.9 0.9 1.9e-42 145.3 0.9 2.1 1 1 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|332797425|ref|YP_004458925.1| - 4.9e-13 49.1 0.1 5.1e-13 49.0 0.1 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas2 Cas_Cas4 PF01930.17 gi|332797426|ref|YP_004458926.1| - 2.3e-09 37.6 0.0 2.5e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF83 CENP-T_C PF15511.6 gi|332797426|ref|YP_004458926.1| - 0.035 14.2 0.2 6 7.0 0.0 2.6 2 1 1 3 3 3 0 Centromere kinetochore component CENP-T histone fold HTH_11 PF08279.12 gi|332797427|ref|YP_004458927.1| - 6.4e-05 22.8 0.2 0.00019 21.3 0.2 1.9 1 0 0 1 1 1 1 HTH domain HTH_Mga PF08280.11 gi|332797427|ref|YP_004458927.1| - 0.00014 21.8 0.8 0.00014 21.8 0.8 2.3 3 0 0 3 3 3 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_24 PF13412.6 gi|332797427|ref|YP_004458927.1| - 0.0042 16.6 0.1 0.0089 15.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_36 PF13730.6 gi|332797427|ref|YP_004458927.1| - 0.0065 16.4 0.3 0.014 15.3 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.13 gi|332797427|ref|YP_004458927.1| - 0.011 15.5 0.5 0.028 14.3 0.5 1.8 1 1 0 1 1 1 0 RuvB C-terminal winged helix domain HrcA_DNA-bdg PF03444.15 gi|332797427|ref|YP_004458927.1| - 0.014 15.1 0.1 0.034 13.8 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Mga PF05043.13 gi|332797427|ref|YP_004458927.1| - 0.044 14.4 1.8 0.12 12.9 1.8 1.7 1 0 0 1 1 1 0 Mga helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|332797427|ref|YP_004458927.1| - 0.052 13.5 0.1 0.15 12.1 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_DeoR PF08220.12 gi|332797427|ref|YP_004458927.1| - 0.085 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain AAA_5 PF07728.14 gi|332797432|ref|YP_004458932.1| - 8.1e-13 48.6 0.0 6.8e-10 39.1 0.0 2.3 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|332797432|ref|YP_004458932.1| - 5.3e-05 23.6 0.1 0.0003 21.2 0.0 2.3 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|332797432|ref|YP_004458932.1| - 0.00036 21.1 0.5 0.0016 19.0 0.0 2.4 3 0 0 3 3 2 1 AAA domain IstB_IS21 PF01695.17 gi|332797432|ref|YP_004458932.1| - 0.00057 19.7 0.0 0.0014 18.4 0.0 1.6 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|332797432|ref|YP_004458932.1| - 0.0018 18.7 0.0 0.011 16.1 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_14 PF13173.6 gi|332797432|ref|YP_004458932.1| - 0.0038 17.3 1.1 0.023 14.8 0.0 2.9 3 1 0 3 3 3 1 AAA domain AAA_7 PF12775.7 gi|332797432|ref|YP_004458932.1| - 0.0044 16.6 0.0 0.011 15.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|332797432|ref|YP_004458932.1| - 0.0057 16.8 0.0 0.019 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) mCpol PF18182.1 gi|332797432|ref|YP_004458932.1| - 0.0084 16.4 0.2 0.029 14.7 0.2 2.0 1 0 0 1 1 1 1 minimal CRISPR polymerase domain KTI12 PF08433.10 gi|332797432|ref|YP_004458932.1| - 0.0085 15.6 0.0 0.13 11.7 0.0 2.7 3 0 0 3 3 3 1 Chromatin associated protein KTI12 RNA_helicase PF00910.22 gi|332797432|ref|YP_004458932.1| - 0.011 16.0 0.1 0.093 13.1 0.0 2.6 1 1 1 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|332797432|ref|YP_004458932.1| - 0.014 15.6 0.0 0.025 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|332797432|ref|YP_004458932.1| - 0.015 14.7 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_11 PF13086.6 gi|332797432|ref|YP_004458932.1| - 0.016 15.0 0.7 0.13 12.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|332797432|ref|YP_004458932.1| - 0.021 15.1 0.0 0.14 12.4 0.0 2.3 3 0 0 3 3 3 0 AAA domain RuvB_N PF05496.12 gi|332797432|ref|YP_004458932.1| - 0.024 14.4 0.0 0.057 13.2 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_25 PF13481.6 gi|332797432|ref|YP_004458932.1| - 0.043 13.4 0.0 0.098 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain TIP49 PF06068.13 gi|332797432|ref|YP_004458932.1| - 0.061 12.5 0.3 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain PhoH PF02562.16 gi|332797432|ref|YP_004458932.1| - 0.063 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_19 PF13245.6 gi|332797432|ref|YP_004458932.1| - 0.067 13.5 0.0 2.1 8.7 0.0 2.7 3 0 0 3 3 2 0 AAA domain RsgA_GTPase PF03193.16 gi|332797432|ref|YP_004458932.1| - 0.073 13.0 0.1 0.25 11.3 0.0 1.8 2 0 0 2 2 2 0 RsgA GTPase PhosphMutase PF10143.9 gi|332797432|ref|YP_004458932.1| - 0.1 12.5 0.1 1.2 9.0 0.0 2.2 2 0 0 2 2 2 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase AAA_28 PF13521.6 gi|332797432|ref|YP_004458932.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|332797432|ref|YP_004458932.1| - 0.16 11.6 0.0 0.33 10.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SNF2_N PF00176.23 gi|332797433|ref|YP_004458933.1| - 1.8e-12 46.7 0.0 2.8e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|332797433|ref|YP_004458933.1| - 1.5e-10 41.3 0.1 2.4e-10 40.7 0.1 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|332797433|ref|YP_004458933.1| - 8.7e-08 32.1 0.1 1.8e-07 31.1 0.1 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|332797433|ref|YP_004458933.1| - 0.0013 19.0 0.2 0.0087 16.3 0.2 2.1 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|332797433|ref|YP_004458933.1| - 0.0046 16.4 0.3 0.068 12.6 0.2 2.2 2 0 0 2 2 2 1 Bacterial TniB protein DUF2075 PF09848.9 gi|332797433|ref|YP_004458933.1| - 0.017 14.4 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.14 gi|332797433|ref|YP_004458933.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Helicase Flavi_DEAD PF07652.14 gi|332797433|ref|YP_004458933.1| - 0.047 13.7 0.0 0.07 13.1 0.0 1.3 1 0 0 1 1 1 0 Flavivirus DEAD domain AAA_34 PF13872.6 gi|332797433|ref|YP_004458933.1| - 0.17 10.7 0.0 0.33 9.8 0.0 1.5 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Helicase_C PF00271.31 gi|332797434|ref|YP_004458934.1| - 5.5e-26 91.1 0.2 1.2e-25 90.0 0.2 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ERCC3_RAD25_C PF16203.5 gi|332797434|ref|YP_004458934.1| - 7.5e-08 31.9 0.2 1.2e-07 31.2 0.2 1.3 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Ribosomal_L13e PF01294.18 gi|332797434|ref|YP_004458934.1| - 0.14 12.0 0.2 0.22 11.4 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L13e CheR_N PF03705.15 gi|332797434|ref|YP_004458934.1| - 0.2 11.4 2.1 1 9.1 0.4 2.4 2 0 0 2 2 2 0 CheR methyltransferase, all-alpha domain Pox_vIL-18BP PF05566.12 gi|332797436|ref|YP_004458936.1| - 0.014 15.6 0.1 0.014 15.6 0.1 1.1 1 0 0 1 1 1 0 Orthopoxvirus interleukin 18 binding protein N6_N4_Mtase PF01555.18 gi|332797437|ref|YP_004458937.1| - 7.6e-11 42.2 6.8 1e-10 41.7 0.0 2.7 3 1 0 3 3 3 1 DNA methylase UPF0020 PF01170.18 gi|332797437|ref|YP_004458937.1| - 7.1e-08 32.4 0.0 7.1e-06 25.8 0.0 2.3 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|332797437|ref|YP_004458937.1| - 3.7e-05 23.5 0.0 9.6e-05 22.2 0.0 1.7 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase MotCF PF09158.10 gi|332797437|ref|YP_004458937.1| - 0.025 14.6 0.0 0.056 13.5 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage T4 MotA, C-terminal Cons_hypoth95 PF03602.15 gi|332797437|ref|YP_004458937.1| - 0.028 14.1 0.0 1 9.0 0.0 2.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 EnY2 PF10163.9 gi|332797437|ref|YP_004458937.1| - 1.6 9.1 4.3 3.8 8.0 0.0 2.9 4 0 0 4 4 4 0 Transcription factor e(y)2 PIN_11 PF18479.1 gi|332797438|ref|YP_004458938.1| - 0.13 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 PIN like domain Thioredoxin PF00085.20 gi|332797441|ref|YP_004458941.1| - 0.0024 17.9 0.1 0.004 17.1 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin zinc_ribbon_4 PF13717.6 gi|332797441|ref|YP_004458941.1| - 0.18 11.7 1.8 2.3 8.2 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PaREP1 PF05942.11 gi|332797443|ref|YP_004458943.1| - 2.7e-37 127.2 5.6 4.2e-37 126.6 5.6 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797443|ref|YP_004458943.1| - 0.0016 18.5 2.4 0.0065 16.5 0.3 2.5 2 1 0 2 2 2 1 Protein of unknown function (DUF357) DUF4559 PF15112.6 gi|332797443|ref|YP_004458943.1| - 0.0027 17.4 0.1 0.0034 17.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4559) FliS PF02561.14 gi|332797443|ref|YP_004458943.1| - 0.0032 17.7 1.5 0.0081 16.4 0.6 1.8 1 1 1 2 2 2 1 Flagellar protein FliS DUF1015 PF06245.11 gi|332797443|ref|YP_004458943.1| - 0.038 12.9 0.2 0.06 12.2 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1015) Ras_bdg_2 PF14847.6 gi|332797443|ref|YP_004458943.1| - 0.11 12.8 0.1 1.9 8.9 0.1 2.1 1 1 1 2 2 2 0 Ras-binding domain of Byr2 HEPN PF05168.14 gi|332797443|ref|YP_004458943.1| - 0.78 9.9 7.7 1.1 9.4 5.8 2.3 2 1 0 2 2 2 0 HEPN domain Apolipoprotein PF01442.18 gi|332797444|ref|YP_004458944.1| - 3.4e-08 33.6 19.4 3.4e-08 33.6 19.4 1.5 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain UPF0102 PF02021.17 gi|332797444|ref|YP_004458944.1| - 4.8e-05 23.5 0.2 0.00016 21.9 0.2 1.9 1 0 0 1 1 1 1 Uncharacterised protein family UPF0102 DUF4143 PF13635.6 gi|332797444|ref|YP_004458944.1| - 0.00014 22.0 2.3 0.00023 21.3 2.1 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) NERD PF08378.11 gi|332797444|ref|YP_004458944.1| - 0.00068 20.1 1.6 0.0042 17.5 0.2 2.6 1 1 1 2 2 2 1 Nuclease-related domain FliT PF05400.13 gi|332797444|ref|YP_004458944.1| - 0.022 15.5 27.8 1.3 9.9 6.3 3.9 1 1 1 2 2 2 0 Flagellar protein FliT Picorna_P3A PF06363.11 gi|332797444|ref|YP_004458944.1| - 0.065 13.1 0.2 0.29 11.0 0.0 2.2 2 1 0 2 2 2 0 Picornaviridae P3A protein GIY-YIG PF01541.24 gi|332797444|ref|YP_004458944.1| - 0.087 13.1 0.6 0.3 11.4 0.1 2.2 2 0 0 2 2 1 0 GIY-YIG catalytic domain DUF1664 PF07889.12 gi|332797444|ref|YP_004458944.1| - 0.088 12.9 0.4 0.088 12.9 0.4 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) Spectrin PF00435.21 gi|332797444|ref|YP_004458944.1| - 0.91 10.0 22.5 5.4 7.5 12.0 4.2 2 1 2 4 4 4 0 Spectrin repeat Prominin PF05478.11 gi|332797444|ref|YP_004458944.1| - 1 7.2 11.8 1.4 6.8 11.8 1.3 1 0 0 1 1 1 0 Prominin LacI PF00356.21 gi|332797444|ref|YP_004458944.1| - 1.7 8.5 5.5 27 4.7 0.3 3.6 1 1 1 2 2 2 0 Bacterial regulatory proteins, lacI family FliD_C PF07195.12 gi|332797444|ref|YP_004458944.1| - 4 6.8 14.3 9.6 5.5 14.3 1.7 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus PTPlike_phytase PF14566.6 gi|332797444|ref|YP_004458944.1| - 5.7 7.0 19.3 2.5 8.2 6.3 3.0 1 1 2 3 3 3 0 Inositol hexakisphosphate MRP-S31 PF15433.6 gi|332797444|ref|YP_004458944.1| - 5.8 6.5 18.3 30 4.1 17.9 2.0 1 1 0 1 1 1 0 Mitochondrial 28S ribosomal protein S31 DUF445 PF04286.12 gi|332797444|ref|YP_004458944.1| - 8.5 6.1 23.8 20 4.9 22.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF445) DUF4250 PF14056.6 gi|332797444|ref|YP_004458944.1| - 9 6.3 7.2 4.7 7.3 0.0 3.6 2 1 2 4 4 4 0 Domain of unknown function (DUF4250) DUF5590 PF17881.1 gi|332797445|ref|YP_004458945.1| - 0.21 11.7 0.8 0.88 9.7 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF5590) DUF2207 PF09972.9 gi|332797446|ref|YP_004458946.1| - 4.8 5.8 7.4 55 2.3 7.4 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) Ceramidase PF05875.12 gi|332797449|ref|YP_004458949.1| - 0.019 14.4 0.1 0.027 13.9 0.1 1.3 1 0 0 1 1 1 0 Ceramidase LRRNT PF01462.18 gi|332797449|ref|YP_004458949.1| - 0.062 13.0 0.1 0.1 12.3 0.1 1.3 1 0 0 1 1 1 0 Leucine rich repeat N-terminal domain DUF1275 PF06912.11 gi|332797449|ref|YP_004458949.1| - 0.062 13.2 0.6 0.071 13.0 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) SLATT_5 PF18160.1 gi|332797449|ref|YP_004458949.1| - 0.21 10.9 1.4 0.3 10.4 1.4 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain family 5 DUF4131 PF13567.6 gi|332797449|ref|YP_004458949.1| - 0.35 10.5 2.7 0.38 10.4 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF202 PF02656.15 gi|332797449|ref|YP_004458949.1| - 1.4 9.4 4.8 0.78 10.2 1.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF202) Glyco_transf_11 PF01531.16 gi|332797450|ref|YP_004458950.1| - 0.0033 16.7 0.0 0.0046 16.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 11 PGK PF00162.19 gi|332797450|ref|YP_004458950.1| - 0.016 14.2 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 Phosphoglycerate kinase SKG6 PF08693.10 gi|332797451|ref|YP_004458951.1| - 2.6 7.6 4.3 3.1 7.3 0.6 2.1 2 0 0 2 2 2 0 Transmembrane alpha-helix domain DUF3098 PF11297.8 gi|332797453|ref|YP_004458953.1| - 0.28 10.8 6.3 0.16 11.6 0.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3098) ABC_tran PF00005.27 gi|332797455|ref|YP_004458955.1| - 2.5e-29 102.6 0.0 3.7e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797455|ref|YP_004458955.1| - 1.2e-10 41.7 1.7 2.3e-06 27.6 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332797455|ref|YP_004458955.1| - 7.6e-06 25.9 2.1 0.00026 20.8 0.1 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_27 PF13514.6 gi|332797455|ref|YP_004458955.1| - 5.7e-05 22.8 0.1 9.2e-05 22.1 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|332797455|ref|YP_004458955.1| - 0.00011 21.8 0.2 0.00021 21.0 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332797455|ref|YP_004458955.1| - 0.00012 22.7 2.1 0.00025 21.6 0.4 2.0 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|332797455|ref|YP_004458955.1| - 0.00028 20.4 1.1 0.011 15.2 0.1 2.3 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|332797455|ref|YP_004458955.1| - 0.0013 18.7 0.1 0.0031 17.4 0.1 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|332797455|ref|YP_004458955.1| - 0.0023 17.7 0.0 0.0039 16.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|332797455|ref|YP_004458955.1| - 0.0043 17.3 0.3 0.014 15.7 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|332797455|ref|YP_004458955.1| - 0.0047 17.3 0.0 0.017 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain IL6 PF00489.17 gi|332797455|ref|YP_004458955.1| - 0.027 14.0 0.1 0.056 13.0 0.1 1.5 1 0 0 1 1 1 0 Interleukin-6/G-CSF/MGF family AAA_13 PF13166.6 gi|332797455|ref|YP_004458955.1| - 0.031 13.0 1.5 0.9 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|332797455|ref|YP_004458955.1| - 0.046 12.5 0.3 0.092 11.5 0.3 1.5 1 0 0 1 1 1 0 Predicted ATPase of the ABC class T2SSE PF00437.20 gi|332797455|ref|YP_004458955.1| - 0.05 12.6 0.0 0.079 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MMR_HSR1 PF01926.23 gi|332797455|ref|YP_004458955.1| - 0.055 13.6 0.4 0.43 10.7 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|332797455|ref|YP_004458955.1| - 0.14 12.1 3.9 1.5 8.7 1.1 2.9 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|332797455|ref|YP_004458955.1| - 0.21 11.3 0.8 4.3 7.0 0.0 2.6 3 0 0 3 3 3 0 IstB-like ATP binding protein AAA PF00004.29 gi|332797455|ref|YP_004458955.1| - 0.26 11.7 2.8 4.9 7.6 2.5 2.7 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|332797456|ref|YP_004458956.1| - 9.2e-17 61.8 0.0 1.3e-16 61.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter Thg1C PF14413.6 gi|332797457|ref|YP_004458957.1| - 0.18 12.0 0.1 0.29 11.3 0.1 1.3 1 0 0 1 1 1 0 Thg1 C terminal domain SP_C-Propep PF08999.10 gi|332797458|ref|YP_004458958.1| - 1.4 8.8 4.6 0.34 10.7 0.4 2.1 2 0 0 2 2 2 0 Surfactant protein C, N terminal propeptide Thermopsin PF05317.11 gi|332797460|ref|YP_004458960.1| - 1.1e-82 277.5 14.6 1.1e-82 277.5 14.6 2.7 3 0 0 3 3 3 1 Thermopsin BetaGal_dom4_5 PF13364.6 gi|332797460|ref|YP_004458960.1| - 5.4e-05 23.7 1.8 0.052 14.1 0.8 2.8 2 0 0 2 2 2 2 Beta-galactosidase jelly roll domain Cadherin-like PF12733.7 gi|332797460|ref|YP_004458960.1| - 0.0002 21.8 3.6 0.043 14.4 0.0 3.9 5 0 0 5 5 5 1 Cadherin-like beta sandwich domain BiPBP_C PF06832.12 gi|332797460|ref|YP_004458960.1| - 0.00058 19.9 0.0 0.16 12.0 0.0 2.5 2 0 0 2 2 2 1 Penicillin-Binding Protein C-terminus Family PKD PF00801.20 gi|332797460|ref|YP_004458960.1| - 0.00075 19.3 1.9 2.1 8.2 0.1 4.2 4 0 0 4 4 4 1 PKD domain DUF3244 PF11589.8 gi|332797460|ref|YP_004458960.1| - 0.0059 16.7 4.2 0.88 9.7 0.6 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF3244) DUF4625 PF15418.6 gi|332797460|ref|YP_004458960.1| - 0.18 12.1 0.5 17 5.7 0.0 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) DUF5305 PF17231.2 gi|332797460|ref|YP_004458960.1| - 0.2 11.1 3.7 0.14 11.6 1.2 1.9 2 0 0 2 2 2 0 Family of unknown function (DUF5305) TFIIA_gamma_C PF02751.14 gi|332797460|ref|YP_004458960.1| - 0.21 11.8 0.6 0.71 10.1 0.6 1.9 1 0 0 1 1 1 0 Transcription initiation factor IIA, gamma subunit Y_Y_Y PF07495.13 gi|332797460|ref|YP_004458960.1| - 1.8 8.6 19.0 1 9.3 0.1 5.0 6 0 0 6 6 6 0 Y_Y_Y domain UxuA PF03786.13 gi|332797461|ref|YP_004458961.1| - 3.7e-24 85.2 0.1 4.4e-24 85.0 0.1 1.0 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|332797461|ref|YP_004458961.1| - 4.3e-06 26.3 0.0 5.2e-06 26.0 0.0 1.0 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Ank_4 PF13637.6 gi|332797462|ref|YP_004458962.1| - 8.2e-19 67.7 0.0 2.6e-10 40.6 0.0 2.1 1 1 1 2 2 2 2 Ankyrin repeats (many copies) Ank_5 PF13857.6 gi|332797462|ref|YP_004458962.1| - 1.1e-18 67.0 0.2 9.5e-13 48.1 0.0 2.3 1 1 1 2 2 2 2 Ankyrin repeats (many copies) Ank_2 PF12796.7 gi|332797462|ref|YP_004458962.1| - 6.1e-15 55.6 0.0 3.6e-12 46.7 0.0 2.1 1 1 1 2 2 2 2 Ankyrin repeats (3 copies) Ank PF00023.30 gi|332797462|ref|YP_004458962.1| - 1.5e-13 50.5 0.1 1.2e-07 31.8 0.0 3.1 3 0 0 3 3 3 2 Ankyrin repeat Ank_3 PF13606.6 gi|332797462|ref|YP_004458962.1| - 1.9e-12 46.2 0.1 6.2e-06 26.2 0.0 3.2 3 0 0 3 3 3 2 Ankyrin repeat GATase_7 PF13537.6 gi|332797462|ref|YP_004458962.1| - 0.079 12.9 0.0 3.5 7.5 0.0 2.1 2 0 0 2 2 2 0 Glutamine amidotransferase domain NUDIX PF00293.28 gi|332797463|ref|YP_004458963.1| - 2.7e-18 66.3 0.3 3e-18 66.1 0.3 1.0 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|332797463|ref|YP_004458963.1| - 7.6e-06 25.9 0.1 9.9e-06 25.5 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Asp_protease_2 PF13650.6 gi|332797464|ref|YP_004458964.1| - 6.1e-07 30.0 0.0 7.7e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|332797464|ref|YP_004458964.1| - 8.3e-07 29.5 0.0 1.2e-06 29.0 0.0 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease DUF1758 PF05585.12 gi|332797464|ref|YP_004458964.1| - 0.14 11.9 0.0 0.18 11.5 0.0 1.1 1 0 0 1 1 1 0 Putative peptidase (DUF1758) HTH_IclR PF09339.10 gi|332797465|ref|YP_004458965.1| - 6e-11 42.0 0.0 1e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|332797465|ref|YP_004458965.1| - 3.1e-10 39.4 0.2 6.1e-09 35.3 0.0 2.7 2 1 1 3 3 3 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|332797465|ref|YP_004458965.1| - 4.7e-10 39.2 2.8 1.3e-08 34.6 1.1 2.6 1 1 1 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|332797465|ref|YP_004458965.1| - 4.7e-08 32.8 0.1 1.1e-07 31.6 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|332797465|ref|YP_004458965.1| - 2.7e-07 31.0 0.3 6.2e-07 29.8 0.3 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|332797465|ref|YP_004458965.1| - 7.9e-07 28.9 0.4 0.0015 18.5 0.1 2.7 2 1 1 3 3 3 2 HTH domain HTH_20 PF12840.7 gi|332797465|ref|YP_004458965.1| - 4e-05 23.6 0.0 0.00015 21.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|332797465|ref|YP_004458965.1| - 4.9e-05 23.1 0.1 0.00012 21.9 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_28 PF13518.6 gi|332797465|ref|YP_004458965.1| - 0.00032 20.8 0.0 1.1 9.4 0.0 2.3 2 0 0 2 2 2 2 Helix-turn-helix domain DUF2250 PF10007.9 gi|332797465|ref|YP_004458965.1| - 0.001 19.2 0.8 1 9.5 0.1 2.5 1 1 1 2 2 2 2 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.20 gi|332797465|ref|YP_004458965.1| - 0.0015 18.4 0.1 0.0055 16.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_29 PF13551.6 gi|332797465|ref|YP_004458965.1| - 0.0018 18.3 0.0 0.34 11.0 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn helix MarR PF01047.22 gi|332797465|ref|YP_004458965.1| - 0.0054 16.6 0.0 0.013 15.4 0.0 1.6 1 0 0 1 1 1 1 MarR family FUR PF01475.19 gi|332797465|ref|YP_004458965.1| - 0.0088 16.2 0.7 0.098 12.8 0.2 2.2 1 1 1 2 2 2 1 Ferric uptake regulator family Penicillinase_R PF03965.16 gi|332797465|ref|YP_004458965.1| - 0.012 16.0 1.2 0.027 14.8 1.0 1.7 1 1 1 2 2 2 0 Penicillinase repressor PadR PF03551.14 gi|332797465|ref|YP_004458965.1| - 0.013 15.5 0.3 0.29 11.1 0.1 2.2 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family PPR_2 PF13041.6 gi|332797465|ref|YP_004458965.1| - 0.014 15.5 0.0 0.029 14.6 0.0 1.5 1 0 0 1 1 1 0 PPR repeat family Fe_dep_repress PF01325.19 gi|332797465|ref|YP_004458965.1| - 0.016 15.4 1.5 0.22 11.8 0.4 2.6 2 1 1 3 3 3 0 Iron dependent repressor, N-terminal DNA binding domain RNA_pol_Rpc34 PF05158.12 gi|332797465|ref|YP_004458965.1| - 0.024 14.0 0.7 0.036 13.4 0.7 1.2 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit Rrf2 PF02082.20 gi|332797465|ref|YP_004458965.1| - 0.026 14.9 0.5 0.18 12.2 0.1 2.3 1 1 2 3 3 3 0 Transcriptional regulator HTH_36 PF13730.6 gi|332797465|ref|YP_004458965.1| - 0.03 14.3 0.1 0.46 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|332797465|ref|YP_004458965.1| - 0.031 14.1 0.0 27 4.6 0.0 3.4 3 0 0 3 3 3 0 HTH DNA binding domain HTH_23 PF13384.6 gi|332797465|ref|YP_004458965.1| - 0.034 14.0 0.0 7 6.6 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain HU-CCDC81_euk_2 PF18289.1 gi|332797465|ref|YP_004458965.1| - 0.094 12.9 0.0 3 8.1 0.0 2.6 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 QueC PF06508.13 gi|332797466|ref|YP_004458966.1| - 6.5e-26 91.1 0.4 4.3e-24 85.2 0.4 2.1 1 1 0 1 1 1 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|332797466|ref|YP_004458966.1| - 0.026 14.3 0.0 4.3 7.1 0.0 2.2 2 0 0 2 2 2 0 PP-loop family DUF1366 PF07104.11 gi|332797467|ref|YP_004458967.1| - 0.00033 20.3 0.6 0.00033 20.3 0.6 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF1366) SieB PF14163.6 gi|332797467|ref|YP_004458967.1| - 0.044 13.3 0.8 0.057 12.9 0.8 1.2 1 0 0 1 1 1 0 Super-infection exclusion protein B Fib_alpha PF08702.10 gi|332797467|ref|YP_004458967.1| - 0.06 13.5 0.5 0.072 13.3 0.5 1.2 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family DUF3675 PF12428.8 gi|332797468|ref|YP_004458968.1| - 0.15 12.7 1.1 3.3 8.3 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3675) Asp_protease_2 PF13650.6 gi|332797469|ref|YP_004458969.1| - 0.0017 18.9 0.0 0.0034 18.0 0.0 1.4 2 0 0 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.6 gi|332797469|ref|YP_004458969.1| - 0.026 15.1 0.0 0.035 14.7 0.0 1.2 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease RVP PF00077.20 gi|332797469|ref|YP_004458969.1| - 0.14 12.5 0.0 0.41 11.0 0.0 1.7 1 1 0 1 1 1 0 Retroviral aspartyl protease Cation_ATPase_C PF00689.21 gi|332797471|ref|YP_004458971.1| - 4.2 7.1 8.3 3 7.5 4.5 2.2 2 0 0 2 2 2 0 Cation transporting ATPase, C-terminus PaREP1 PF05942.11 gi|332797473|ref|YP_004458973.1| - 1e-09 38.3 0.1 1.2e-09 38.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HTH_5 PF01022.20 gi|332797474|ref|YP_004458974.1| - 1.1e-16 60.5 0.3 1.7e-16 59.8 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|332797474|ref|YP_004458974.1| - 2.4e-06 27.3 0.1 4.8e-06 26.4 0.1 1.5 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.6 gi|332797474|ref|YP_004458974.1| - 4e-06 26.9 0.1 6.2e-06 26.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|332797474|ref|YP_004458974.1| - 2.1e-05 24.5 0.0 2.8e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|332797474|ref|YP_004458974.1| - 3.8e-05 23.2 0.0 5.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_9 PF08221.11 gi|332797474|ref|YP_004458974.1| - 0.0058 16.7 0.2 0.011 15.8 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_38 PF13936.6 gi|332797474|ref|YP_004458974.1| - 0.021 14.6 0.1 0.063 13.1 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|332797474|ref|YP_004458974.1| - 0.033 14.1 0.1 0.054 13.4 0.1 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit DUF4423 PF14394.6 gi|332797474|ref|YP_004458974.1| - 0.034 13.8 0.0 0.038 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FeoC PF09012.10 gi|332797474|ref|YP_004458974.1| - 0.077 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator MarR_2 PF12802.7 gi|332797474|ref|YP_004458974.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF2551 PF10826.8 gi|332797474|ref|YP_004458974.1| - 0.095 12.9 0.3 0.2 11.9 0.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) Pyr_redox_2 PF07992.14 gi|332797475|ref|YP_004458975.1| - 6.6e-55 186.4 0.2 9.3e-55 185.9 0.2 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|332797475|ref|YP_004458975.1| - 1.8e-22 79.7 0.2 3.7e-22 78.6 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|332797475|ref|YP_004458975.1| - 1.6e-14 53.8 5.5 3.7e-13 49.4 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797475|ref|YP_004458975.1| - 1.7e-11 44.5 3.8 1.9e-11 44.4 0.3 2.8 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332797475|ref|YP_004458975.1| - 8.3e-07 28.4 8.3 0.02 14.0 0.6 3.6 4 0 0 4 4 4 3 Glucose inhibited division protein A HI0933_like PF03486.14 gi|332797475|ref|YP_004458975.1| - 0.00014 20.7 1.4 0.021 13.5 0.0 2.7 2 1 1 3 3 3 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|332797475|ref|YP_004458975.1| - 0.0059 15.7 2.7 1 8.4 0.0 2.5 3 0 0 3 3 3 2 FAD binding domain PaREP1 PF05942.11 gi|332797476|ref|YP_004458976.1| - 3.5e-21 75.3 0.5 9.5e-21 73.9 0.0 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332797477|ref|YP_004458977.1| - 7.8e-21 74.4 1.4 8.4e-21 74.3 1.4 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|332797478|ref|YP_004458978.1| - 5.5e-11 42.6 0.6 7.6e-11 42.2 0.6 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797478|ref|YP_004458978.1| - 5.5e-07 29.6 0.2 1.3e-06 28.4 0.1 1.7 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|332797478|ref|YP_004458978.1| - 0.018 14.8 0.0 0.023 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 Adenyl_transf PF04439.12 gi|332797478|ref|YP_004458978.1| - 0.045 12.8 0.2 0.22 10.6 0.0 2.0 1 1 1 2 2 2 0 Streptomycin adenylyltransferase PaREP1 PF05942.11 gi|332797479|ref|YP_004458979.1| - 1.9e-11 43.9 0.6 2.4e-11 43.6 0.6 1.2 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family TrmO PF01980.16 gi|332797480|ref|YP_004458980.1| - 4.5e-32 110.7 0.0 6.1e-32 110.3 0.0 1.1 1 0 0 1 1 1 1 tRNA-methyltransferase O HSM3_N PF18795.1 gi|332797481|ref|YP_004458981.1| - 0.022 14.2 1.1 0.039 13.4 1.1 1.4 1 0 0 1 1 1 0 DNA mismatch repair protein HSM3, N terminal domain PaREP1 PF05942.11 gi|332797482|ref|YP_004458982.1| - 5.3e-10 39.2 0.3 1.3e-09 38.0 0.1 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797482|ref|YP_004458982.1| - 0.00037 20.5 0.1 0.00042 20.3 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF357) ArsA_ATPase PF02374.15 gi|332797482|ref|YP_004458982.1| - 0.022 14.0 0.5 0.023 13.9 0.5 1.0 1 0 0 1 1 1 0 Anion-transporting ATPase ComZ PF10815.8 gi|332797482|ref|YP_004458982.1| - 0.11 12.6 0.7 0.2 11.7 0.0 1.8 2 0 0 2 2 2 0 ComZ Ribosomal_L22 PF00237.19 gi|332797482|ref|YP_004458982.1| - 0.12 12.7 1.1 3.9 7.8 0.1 2.0 1 1 1 2 2 2 0 Ribosomal protein L22p/L17e SinI PF08671.10 gi|332797482|ref|YP_004458982.1| - 0.54 10.1 3.2 0.34 10.7 1.2 1.7 2 0 0 2 2 2 0 Anti-repressor SinI Spectrin PF00435.21 gi|332797483|ref|YP_004458983.1| - 0.11 13.0 1.0 0.28 11.7 1.0 1.6 1 0 0 1 1 1 0 Spectrin repeat Resolvase PF00239.21 gi|332797484|ref|YP_004458984.1| - 7.9e-17 61.7 0.4 9.1e-17 61.5 0.4 1.1 1 0 0 1 1 1 1 Resolvase, N terminal domain Tht1 PF04163.12 gi|332797484|ref|YP_004458984.1| - 0.1 11.4 0.0 0.1 11.3 0.0 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein Exo_endo_phos PF03372.23 gi|332797485|ref|YP_004458985.1| - 2.9e-16 59.7 0.0 3.8e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|332797485|ref|YP_004458985.1| - 3.9e-06 26.7 0.0 7.3e-06 25.8 0.0 1.5 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase HPP PF04982.13 gi|332797486|ref|YP_004458986.1| - 1.8e-06 28.1 3.0 1.8e-06 28.1 3.0 1.5 1 1 0 1 1 1 1 HPP family Radical_SAM PF04055.21 gi|332797487|ref|YP_004458987.1| - 2.1e-10 41.2 1.7 1.2e-09 38.8 1.7 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|332797487|ref|YP_004458987.1| - 7.2e-10 39.0 0.7 3e-09 37.0 0.7 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|332797487|ref|YP_004458987.1| - 1.1e-06 29.0 2.6 5.2e-06 26.8 2.6 2.0 1 1 0 1 1 1 1 4Fe-4S single cluster domain PmbA_TldD PF01523.16 gi|332797489|ref|YP_004458989.1| - 2.7e-25 89.8 0.2 4.2e-25 89.2 0.2 1.3 1 0 0 1 1 1 1 Putative modulator of DNA gyrase PmbA_TldD PF01523.16 gi|332797490|ref|YP_004458990.1| - 4.1e-41 141.7 0.3 5.1e-41 141.3 0.3 1.1 1 0 0 1 1 1 1 Putative modulator of DNA gyrase DUF2098 PF09871.9 gi|332797490|ref|YP_004458990.1| - 0.034 14.5 0.4 0.079 13.3 0.4 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2098) RE_SacI PF09566.10 gi|332797491|ref|YP_004458991.1| - 5.8e-05 23.0 0.0 7.9e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 SacI restriction endonuclease HSDR_N PF04313.14 gi|332797491|ref|YP_004458991.1| - 0.014 15.3 0.1 0.021 14.8 0.1 1.2 1 0 0 1 1 1 0 Type I restriction enzyme R protein N terminus (HSDR_N) Resolvase PF00239.21 gi|332797492|ref|YP_004458992.1| - 1.3e-16 61.1 0.1 1.7e-16 60.7 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|332797492|ref|YP_004458992.1| - 1.3e-11 44.5 0.1 2.7e-11 43.5 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR_1 PF13411.6 gi|332797492|ref|YP_004458992.1| - 1.4e-09 37.9 0.1 4.1e-09 36.4 0.1 1.8 1 0 0 1 1 1 1 MerR HTH family regulatory protein MerR PF00376.23 gi|332797492|ref|YP_004458992.1| - 2.5e-06 27.1 0.0 4.8e-06 26.2 0.0 1.5 1 0 0 1 1 1 1 MerR family regulatory protein MerR_2 PF13591.6 gi|332797492|ref|YP_004458992.1| - 5.3e-05 23.0 1.1 0.00018 21.3 0.0 2.3 3 0 0 3 3 3 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|332797492|ref|YP_004458992.1| - 0.0042 16.8 0.0 0.013 15.3 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.11 gi|332797492|ref|YP_004458992.1| - 0.031 14.3 1.7 0.1 12.6 0.0 2.6 3 1 0 3 3 3 0 M protein trans-acting positive regulator (MGA) HTH domain CLP1_P PF16575.5 gi|332797492|ref|YP_004458992.1| - 0.046 13.5 0.1 0.068 13.0 0.1 1.3 1 1 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Sigma70_r4_2 PF08281.12 gi|332797492|ref|YP_004458992.1| - 0.073 12.8 0.0 0.18 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_26 PF13443.6 gi|332797492|ref|YP_004458992.1| - 0.12 12.9 0.0 9.6 6.7 0.0 2.6 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 gi|332797492|ref|YP_004458992.1| - 0.12 12.5 0.0 0.3 11.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.16 gi|332797492|ref|YP_004458992.1| - 0.17 11.6 0.0 0.32 10.8 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain OrfB_Zn_ribbon PF07282.11 gi|332797493|ref|YP_004458993.1| - 3.5e-23 81.3 0.1 6.5e-23 80.4 0.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797493|ref|YP_004458993.1| - 1.1e-12 48.3 0.2 4.8e-12 46.2 0.0 2.1 2 0 0 2 2 2 1 Probable transposase C1_2 PF03107.16 gi|332797493|ref|YP_004458993.1| - 0.019 15.3 0.2 0.034 14.5 0.2 1.4 1 0 0 1 1 1 0 C1 domain FAM76 PF16046.5 gi|332797493|ref|YP_004458993.1| - 0.072 12.4 0.1 0.16 11.3 0.1 1.5 1 0 0 1 1 1 0 FAM76 protein Csa1 PF06023.12 gi|332797493|ref|YP_004458993.1| - 0.22 10.8 1.4 2.2 7.6 0.5 2.0 2 0 0 2 2 2 0 CRISPR-associated exonuclease Csa1 Stirrup PF09061.6 gi|332797493|ref|YP_004458993.1| - 1.4 9.2 4.1 6.2 7.1 0.1 2.9 3 0 0 3 3 3 0 Stirrup OrfB_Zn_ribbon PF07282.11 gi|332797494|ref|YP_004458994.1| - 3.4e-08 33.3 0.0 7.1e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Resolvase PF00239.21 gi|332797495|ref|YP_004458995.1| - 2.9e-22 79.3 0.1 8e-22 77.9 0.1 1.6 2 0 0 2 2 2 1 Resolvase, N terminal domain HTH_17 PF12728.7 gi|332797495|ref|YP_004458995.1| - 7.8e-15 54.8 0.8 1.6e-14 53.8 0.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MerR PF00376.23 gi|332797495|ref|YP_004458995.1| - 2.3e-05 24.1 0.2 5.1e-05 23.0 0.2 1.7 1 0 0 1 1 1 1 MerR family regulatory protein MerR_1 PF13411.6 gi|332797495|ref|YP_004458995.1| - 0.0032 17.5 0.1 0.0095 16.0 0.1 1.9 1 1 0 1 1 1 1 MerR HTH family regulatory protein HTH_23 PF13384.6 gi|332797495|ref|YP_004458995.1| - 0.007 16.1 0.0 0.017 14.9 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain YcxB PF14317.6 gi|332797495|ref|YP_004458995.1| - 0.029 14.1 0.1 0.064 13.0 0.1 1.6 1 0 0 1 1 1 0 YcxB-like protein Phage_AlpA PF05930.12 gi|332797495|ref|YP_004458995.1| - 0.052 13.4 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HTH_psq PF05225.16 gi|332797495|ref|YP_004458995.1| - 0.06 13.1 0.3 4.7 7.0 0.0 2.4 2 0 0 2 2 2 0 helix-turn-helix, Psq domain AAA_14 PF13173.6 gi|332797496|ref|YP_004458996.1| - 1.4e-08 34.8 0.0 2.1e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|332797496|ref|YP_004458996.1| - 0.001 19.1 0.4 1.8 8.4 0.1 2.7 1 1 1 2 2 2 2 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|332797496|ref|YP_004458996.1| - 0.0032 17.9 0.0 0.88 9.9 0.0 2.7 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|332797496|ref|YP_004458996.1| - 0.12 12.6 0.2 16 5.7 0.0 2.2 1 1 1 2 2 2 0 AAA domain Viral_helicase1 PF01443.18 gi|332797496|ref|YP_004458996.1| - 0.16 11.7 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase TPP_enzyme_N PF02776.18 gi|332797498|ref|YP_004458998.1| - 3.2e-41 140.8 0.0 3e-39 134.4 0.0 2.2 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|332797498|ref|YP_004458998.1| - 2.6e-17 63.0 0.0 7.7e-16 58.2 0.0 2.7 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|332797498|ref|YP_004458998.1| - 0.00068 19.4 0.0 0.0061 16.3 0.0 2.5 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain Cluap1 PF10234.9 gi|332797498|ref|YP_004458998.1| - 0.14 11.5 1.0 0.24 10.8 1.0 1.3 1 0 0 1 1 1 0 Clusterin-associated protein-1 HEPN PF05168.14 gi|332797499|ref|YP_004458999.1| - 1.3e-29 102.7 0.1 1.7e-29 102.3 0.1 1.1 1 0 0 1 1 1 1 HEPN domain Enolase_like_N PF18374.1 gi|332797499|ref|YP_004458999.1| - 0.12 11.7 0.0 9 5.8 0.0 2.5 2 0 0 2 2 2 0 Enolase N-terminal domain-like Polbeta PF18765.1 gi|332797500|ref|YP_004459000.1| - 1.3e-10 41.2 0.0 3.9e-10 39.7 0.0 1.8 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|332797500|ref|YP_004459000.1| - 1e-07 32.1 0.2 1.7e-07 31.4 0.2 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Lactamase_B PF00753.27 gi|332797501|ref|YP_004459001.1| - 6.8e-24 85.0 0.0 8e-24 84.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332797501|ref|YP_004459001.1| - 7.4e-06 25.6 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|332797501|ref|YP_004459001.1| - 0.0098 15.3 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Mur_ligase_M PF08245.12 gi|332797501|ref|YP_004459001.1| - 0.01 15.8 0.0 0.027 14.5 0.0 1.6 2 0 0 2 2 2 0 Mur ligase middle domain PfkB PF00294.24 gi|332797501|ref|YP_004459001.1| - 0.19 11.0 0.0 9.8 5.4 0.0 2.1 2 0 0 2 2 2 0 pfkB family carbohydrate kinase PaREP1 PF05942.11 gi|332797502|ref|YP_004459002.1| - 1.7e-37 127.8 6.6 1.7e-37 127.8 6.6 1.4 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797502|ref|YP_004459002.1| - 0.0017 18.4 0.1 0.0053 16.8 0.1 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF357) FliS PF02561.14 gi|332797502|ref|YP_004459002.1| - 0.022 15.0 1.4 0.068 13.4 0.4 1.9 1 1 1 2 2 2 0 Flagellar protein FliS Hydin_ADK PF17213.3 gi|332797502|ref|YP_004459002.1| - 0.075 13.3 0.1 0.083 13.2 0.1 1.2 1 0 0 1 1 1 0 Hydin Adenylate kinase-like domain SesA PF17107.5 gi|332797502|ref|YP_004459002.1| - 0.085 13.1 1.5 7.5 6.8 0.1 2.4 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases HEPN PF05168.14 gi|332797502|ref|YP_004459002.1| - 0.18 12.0 5.9 0.19 11.9 3.7 2.3 2 1 0 2 2 2 0 HEPN domain DUF4145 PF13643.6 gi|332797503|ref|YP_004459003.1| - 0.0044 17.1 4.2 0.29 11.3 0.1 3.1 1 1 2 3 3 3 1 Domain of unknown function (DUF4145) Phage_TAC_12 PF12363.8 gi|332797503|ref|YP_004459003.1| - 0.016 15.6 2.6 0.37 11.2 0.2 2.9 1 1 2 3 3 3 0 Phage tail assembly chaperone protein, TAC Rep_2 PF01719.17 gi|332797503|ref|YP_004459003.1| - 0.059 13.2 3.7 0.045 13.5 1.2 1.9 1 1 1 2 2 2 0 Plasmid replication protein IlvC PF01450.19 gi|332797503|ref|YP_004459003.1| - 0.12 12.7 2.1 1.1 9.5 0.4 2.6 1 1 2 3 3 3 0 Acetohydroxy acid isomeroreductase, catalytic domain MMS19_N PF14500.6 gi|332797507|ref|YP_004459007.1| - 0.00097 18.8 0.0 0.0019 17.8 0.0 1.5 1 1 0 1 1 1 1 Dos2-interacting transcription regulator of RNA-Pol-II DUF2004 PF09406.10 gi|332797507|ref|YP_004459007.1| - 0.0099 16.2 1.2 0.033 14.5 0.3 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF2004) DUF4110 PF13422.6 gi|332797507|ref|YP_004459007.1| - 0.03 14.4 0.8 3.9 7.6 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4110) DUF4208 PF13907.6 gi|332797507|ref|YP_004459007.1| - 0.17 12.4 2.1 1.9 9.0 0.2 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4208) ARS2 PF04959.13 gi|332797507|ref|YP_004459007.1| - 0.39 11.1 3.9 0.14 12.5 1.4 1.5 2 0 0 2 2 2 0 Arsenite-resistance protein 2 DUF2779 PF11074.8 gi|332797508|ref|YP_004459008.1| - 0.012 16.1 0.1 0.027 14.9 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function(DUF2779) DUF1931 PF09123.11 gi|332797508|ref|YP_004459008.1| - 0.042 14.0 0.2 1 9.5 0.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1931) AAA_14 PF13173.6 gi|332797508|ref|YP_004459008.1| - 0.54 10.3 3.1 2.6 8.1 0.1 2.5 3 0 0 3 3 3 0 AAA domain YgaB PF14182.6 gi|332797508|ref|YP_004459008.1| - 1 9.8 5.2 14 6.2 0.0 3.8 3 1 0 3 3 3 0 YgaB-like protein BacA PF02673.18 gi|332797509|ref|YP_004459009.1| - 1.9e-44 152.3 14.6 2.4e-44 152.0 14.6 1.1 1 0 0 1 1 1 1 Bacitracin resistance protein BacA S_4TM PF18159.1 gi|332797509|ref|YP_004459009.1| - 8 5.7 8.0 2.3 7.4 0.1 2.3 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain OrfB_Zn_ribbon PF07282.11 gi|332797511|ref|YP_004459011.1| - 7.7e-19 67.4 0.9 2.5e-18 65.8 0.3 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797511|ref|YP_004459011.1| - 0.0013 19.0 0.2 0.0027 17.9 0.2 1.5 1 0 0 1 1 1 1 Probable transposase DUF2381 PF09544.10 gi|332797511|ref|YP_004459011.1| - 0.099 12.2 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) zf-RING_4 PF14570.6 gi|332797511|ref|YP_004459011.1| - 0.16 11.8 1.1 0.35 10.7 1.1 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain PaREP1 PF05942.11 gi|332797512|ref|YP_004459012.1| - 6.8e-23 80.8 2.0 1.2e-22 80.0 0.3 1.9 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF72 PF01904.18 gi|332797513|ref|YP_004459013.1| - 1.6e-28 100.4 1.2 2e-28 100.0 1.2 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF72 AP_endonuc_2 PF01261.24 gi|332797513|ref|YP_004459013.1| - 0.0023 17.4 0.0 0.0066 15.9 0.0 1.7 1 1 1 2 2 2 1 Xylose isomerase-like TIM barrel Frankia_peptide PF14407.6 gi|332797513|ref|YP_004459013.1| - 0.033 14.2 0.0 0.59 10.2 0.0 2.3 2 0 0 2 2 2 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. SfsA PF03749.13 gi|332797514|ref|YP_004459014.1| - 1.2e-38 132.1 0.0 1.6e-38 131.7 0.0 1.2 1 0 0 1 1 1 1 Sugar fermentation stimulation protein RE domain SfsA_N PF17746.1 gi|332797514|ref|YP_004459014.1| - 3.9e-15 55.7 0.1 1.1e-14 54.3 0.1 1.8 2 0 0 2 2 2 1 SfsA N-terminal OB domain GCHY-1 PF02649.14 gi|332797514|ref|YP_004459014.1| - 0.079 12.5 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Type I GTP cyclohydrolase folE2 CBM39 PF15886.5 gi|332797514|ref|YP_004459014.1| - 0.081 12.8 0.1 1.8 8.5 0.0 2.4 2 0 0 2 2 2 0 Carbohydrate binding domain (family 32) PaREP1 PF05942.11 gi|332797515|ref|YP_004459015.1| - 9.6e-06 25.5 0.1 3.8e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF357 PF04010.13 gi|332797515|ref|YP_004459015.1| - 0.011 15.8 0.0 0.013 15.5 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF357) Spore_YtrH PF14034.6 gi|332797516|ref|YP_004459016.1| - 0.0081 16.3 1.8 0.0081 16.3 1.8 1.4 2 0 0 2 2 2 1 Sporulation protein YtrH Phage_holin_3_3 PF16083.5 gi|332797516|ref|YP_004459016.1| - 0.57 10.3 7.0 2.1 8.5 5.5 1.9 1 1 1 2 2 2 0 LydA holin phage, holin superfamily III RseC_MucC PF04246.12 gi|332797516|ref|YP_004459016.1| - 3.3 7.7 4.4 4 7.4 4.4 1.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC DUF5325 PF17259.2 gi|332797516|ref|YP_004459016.1| - 3.4 7.6 8.4 1.1 9.2 2.8 2.4 2 1 0 2 2 2 0 Family of unknown function (DUF5325) Aldo_ket_red PF00248.21 gi|332797518|ref|YP_004459018.1| - 2.7e-64 217.2 0.3 1.7e-62 211.3 0.3 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family SLH PF00395.20 gi|332797518|ref|YP_004459018.1| - 0.21 11.6 0.9 19 5.3 0.0 3.3 3 0 0 3 3 3 0 S-layer homology domain DUF3800 PF12686.7 gi|332797519|ref|YP_004459019.1| - 0.0012 19.5 0.0 0.0016 19.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3800) Peptidase_S74 PF13884.6 gi|332797520|ref|YP_004459020.1| - 0.057 13.7 0.0 0.071 13.4 0.0 1.4 1 1 0 1 1 1 0 Chaperone of endosialidase ApoLp-III PF07464.11 gi|332797522|ref|YP_004459022.1| - 0.0022 18.1 2.8 0.17 12.0 0.4 2.1 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) Phasin PF05597.11 gi|332797522|ref|YP_004459022.1| - 0.024 14.6 1.5 0.035 14.1 1.5 1.3 1 1 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) COMP PF11598.8 gi|332797522|ref|YP_004459022.1| - 0.033 14.6 0.2 3.2 8.3 0.1 2.7 2 1 0 2 2 2 0 Cartilage oligomeric matrix protein TMP_2 PF06791.13 gi|332797522|ref|YP_004459022.1| - 0.038 13.7 0.2 0.046 13.4 0.2 1.1 1 0 0 1 1 1 0 Prophage tail length tape measure protein DUF883 PF05957.13 gi|332797522|ref|YP_004459022.1| - 0.12 13.0 1.3 1.3 9.6 0.2 2.0 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF883) FAM25 PF15825.5 gi|332797522|ref|YP_004459022.1| - 0.31 11.4 7.9 0.29 11.5 1.4 2.2 1 1 1 2 2 2 0 FAM25 family YtxH PF12732.7 gi|332797522|ref|YP_004459022.1| - 2 9.0 8.3 96 3.6 8.3 2.2 1 1 0 1 1 1 0 YtxH-like protein MltA PF03562.17 gi|332797523|ref|YP_004459023.1| - 0.16 11.7 0.0 0.18 11.6 0.0 1.1 1 0 0 1 1 1 0 MltA specific insert domain ABC_tran PF00005.27 gi|332797525|ref|YP_004459025.1| - 3.6e-12 47.0 0.0 5.1e-12 46.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797525|ref|YP_004459025.1| - 3.4e-06 27.1 1.1 3.9e-06 26.9 0.8 1.2 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|332797525|ref|YP_004459025.1| - 4.2e-06 26.4 0.2 7.8e-06 25.5 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332797525|ref|YP_004459025.1| - 0.00012 22.7 1.6 0.00024 21.7 1.6 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332797525|ref|YP_004459025.1| - 0.00076 19.9 0.0 0.00082 19.8 0.0 1.2 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|332797525|ref|YP_004459025.1| - 0.0012 18.3 0.3 0.0046 16.4 0.1 1.9 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|332797525|ref|YP_004459025.1| - 0.0012 18.1 0.0 0.0016 17.8 0.0 1.1 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|332797525|ref|YP_004459025.1| - 0.0018 18.7 0.0 0.0018 18.7 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|332797525|ref|YP_004459025.1| - 0.0022 17.8 0.4 0.0037 17.0 0.3 1.4 1 1 0 1 1 1 1 AAA ATPase domain Mg_chelatase PF01078.21 gi|332797525|ref|YP_004459025.1| - 0.0025 17.2 0.0 0.0034 16.8 0.0 1.2 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|332797525|ref|YP_004459025.1| - 0.0027 17.7 0.0 0.003 17.5 0.0 1.1 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_24 PF13479.6 gi|332797525|ref|YP_004459025.1| - 0.0061 16.3 0.0 0.0074 16.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|332797525|ref|YP_004459025.1| - 0.012 14.7 0.1 0.015 14.4 0.1 1.3 1 1 0 1 1 1 0 Type II/IV secretion system protein G-alpha PF00503.20 gi|332797525|ref|YP_004459025.1| - 0.012 14.8 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_5 PF07728.14 gi|332797525|ref|YP_004459025.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|332797525|ref|YP_004459025.1| - 0.018 14.7 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|332797525|ref|YP_004459025.1| - 0.022 13.9 0.0 0.023 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.12 gi|332797525|ref|YP_004459025.1| - 0.023 14.6 0.1 0.037 14.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain DLIC PF05783.11 gi|332797525|ref|YP_004459025.1| - 0.024 13.5 0.1 0.037 12.9 0.0 1.3 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) NTPase_1 PF03266.15 gi|332797525|ref|YP_004459025.1| - 0.027 14.4 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 NTPase MMR_HSR1 PF01926.23 gi|332797525|ref|YP_004459025.1| - 0.037 14.1 0.2 0.049 13.7 0.2 1.3 1 1 0 1 1 1 0 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|332797525|ref|YP_004459025.1| - 0.052 13.4 0.2 0.079 12.9 0.2 1.4 1 1 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|332797525|ref|YP_004459025.1| - 0.057 13.0 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|332797525|ref|YP_004459025.1| - 0.058 13.0 0.0 0.086 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain TxDE PF18711.1 gi|332797525|ref|YP_004459025.1| - 0.09 12.9 0.1 0.38 10.9 0.1 2.0 1 1 1 2 2 2 0 Toxoflavin-degrading enzyme FtsK_SpoIIIE PF01580.18 gi|332797525|ref|YP_004459025.1| - 0.095 12.0 0.3 1.3 8.3 0.1 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family PduV-EutP PF10662.9 gi|332797525|ref|YP_004459025.1| - 0.097 12.4 0.1 0.34 10.6 0.0 1.8 1 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_28 PF13521.6 gi|332797525|ref|YP_004459025.1| - 0.1 12.9 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain SH3_2 PF07653.17 gi|332797525|ref|YP_004459025.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Variant SH3 domain Gtr1_RagA PF04670.12 gi|332797525|ref|YP_004459025.1| - 0.11 11.8 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region AAA_33 PF13671.6 gi|332797525|ref|YP_004459025.1| - 0.13 12.5 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|332797525|ref|YP_004459025.1| - 0.13 12.8 0.2 0.15 12.6 0.2 1.4 1 1 0 1 1 1 0 AAA domain Ald_Xan_dh_C2 PF02738.18 gi|332797526|ref|YP_004459026.1| - 1.6e-97 327.3 0.0 2.8e-97 326.5 0.0 1.4 1 1 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|332797526|ref|YP_004459026.1| - 1.8e-20 73.4 0.0 2.9e-20 72.7 0.0 1.4 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain PPC PF04151.15 gi|332797527|ref|YP_004459027.1| - 0.011 16.8 3.0 0.027 15.6 1.7 2.3 1 1 1 2 2 2 0 Bacterial pre-peptidase C-terminal domain PIH1 PF08190.12 gi|332797527|ref|YP_004459027.1| - 0.021 14.3 0.0 0.043 13.3 0.0 1.5 2 0 0 2 2 2 0 PIH1 N-terminal domain Laminin_G_3 PF13385.6 gi|332797528|ref|YP_004459028.1| - 0.00016 21.8 0.5 1.1 9.4 0.0 3.6 2 1 0 2 2 2 2 Concanavalin A-like lectin/glucanases superfamily Toxin_2 PF00451.19 gi|332797528|ref|YP_004459028.1| - 0.028 14.7 2.4 0.11 12.9 2.4 2.1 1 0 0 1 1 1 0 Scorpion short toxin, BmKK2 DUF4199 PF13858.6 gi|332797529|ref|YP_004459029.1| - 0.0039 17.6 0.7 0.0079 16.6 0.7 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF4199) Adeno_E3_CR2 PF02439.15 gi|332797529|ref|YP_004459029.1| - 0.073 12.8 1.6 0.2 11.4 1.6 1.8 1 0 0 1 1 1 0 Adenovirus E3 region protein CR2 Baculo_11_kDa PF06143.11 gi|332797529|ref|YP_004459029.1| - 0.1 12.2 0.2 0.18 11.4 0.2 1.4 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF2516 PF10724.9 gi|332797529|ref|YP_004459029.1| - 0.21 11.9 0.2 0.21 11.9 0.2 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2516) Class_IIIsignal PF04021.12 gi|332797529|ref|YP_004459029.1| - 3 7.9 10.2 3.5 7.7 7.0 2.4 2 0 0 2 2 2 0 Class III signal peptide TNFR_16_TM PF18422.1 gi|332797529|ref|YP_004459029.1| - 4.5 7.3 5.9 5.8 7.0 3.7 2.2 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain DUF4499 PF14934.6 gi|332797530|ref|YP_004459030.1| - 0.0063 16.8 0.2 0.019 15.3 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4499) Phage_holin_2_3 PF16080.5 gi|332797531|ref|YP_004459031.1| - 0.023 14.4 0.0 0.056 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage holin family HP1 PhaC_N PF07167.13 gi|332797533|ref|YP_004459033.1| - 0.0015 18.2 0.2 0.0021 17.8 0.2 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Gag_p24 PF00607.20 gi|332797533|ref|YP_004459033.1| - 0.043 13.7 0.0 0.059 13.2 0.0 1.2 1 0 0 1 1 1 0 gag gene protein p24 (core nucleocapsid protein) DUF3800 PF12686.7 gi|332797534|ref|YP_004459034.1| - 0.077 13.6 0.0 0.54 10.9 0.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) dUTPase PF00692.19 gi|332797535|ref|YP_004459035.1| - 0.073 12.8 0.0 0.17 11.6 0.0 1.6 2 0 0 2 2 2 0 dUTPase DUF2721 PF11026.8 gi|332797536|ref|YP_004459036.1| - 0.084 12.8 0.2 0.084 12.8 0.2 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2721) ABC2_membrane_2 PF12679.7 gi|332797537|ref|YP_004459037.1| - 1.2e-14 54.3 21.4 1.3e-14 54.1 21.4 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF4091 PF13320.6 gi|332797538|ref|YP_004459038.1| - 0.14 12.3 0.1 0.45 10.7 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4091) AA_permease_2 PF13520.6 gi|332797539|ref|YP_004459039.1| - 3.8e-34 118.2 57.2 3.8e-34 118.2 57.2 2.1 1 1 1 2 2 2 2 Amino acid permease AA_permease PF00324.21 gi|332797539|ref|YP_004459039.1| - 5e-21 74.9 62.5 5e-21 74.9 62.5 2.0 1 1 1 2 2 2 1 Amino acid permease DUF4179 PF13786.6 gi|332797539|ref|YP_004459039.1| - 0.88 10.1 6.4 2.6 8.6 0.1 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4179) ATPase_2 PF01637.18 gi|332797540|ref|YP_004459040.1| - 2.5e-12 47.2 8.0 2.5e-12 47.2 8.0 2.7 1 1 1 2 2 2 1 ATPase domain predominantly from Archaea AAA_16 PF13191.6 gi|332797540|ref|YP_004459040.1| - 9.3e-10 39.2 0.0 1.4e-09 38.5 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_14 PF13173.6 gi|332797540|ref|YP_004459040.1| - 1e-09 38.5 3.9 2.4e-05 24.4 0.3 2.7 1 1 1 2 2 2 2 AAA domain TniB PF05621.11 gi|332797540|ref|YP_004459040.1| - 3.4e-07 29.9 0.1 0.013 14.9 0.0 2.3 2 0 0 2 2 2 2 Bacterial TniB protein AAA_22 PF13401.6 gi|332797540|ref|YP_004459040.1| - 0.0014 18.9 0.1 0.015 15.6 0.0 2.5 1 1 1 2 2 2 1 AAA domain DUF4423 PF14394.6 gi|332797540|ref|YP_004459040.1| - 0.0062 16.3 0.1 0.014 15.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|332797540|ref|YP_004459040.1| - 0.036 14.3 0.1 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain vATP-synt_AC39 PF01992.16 gi|332797540|ref|YP_004459040.1| - 0.04 13.4 4.1 0.046 13.2 0.1 2.9 4 0 0 4 4 4 0 ATP synthase (C/AC39) subunit MarR PF01047.22 gi|332797540|ref|YP_004459040.1| - 0.082 12.8 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 MarR family AAA_35 PF14516.6 gi|332797540|ref|YP_004459040.1| - 0.19 10.5 4.8 4.7 6.0 0.1 3.3 3 1 1 4 4 4 0 AAA-like domain zf-RING_UBOX PF13445.6 gi|332797540|ref|YP_004459040.1| - 0.26 11.3 0.9 0.58 10.2 0.9 1.5 1 0 0 1 1 1 0 RING-type zinc-finger DUF262 PF03235.14 gi|332797540|ref|YP_004459040.1| - 4 7.6 9.3 0.69 10.1 0.1 2.9 2 1 1 3 3 3 0 Protein of unknown function DUF262 Ald_Xan_dh_C2 PF02738.18 gi|332797541|ref|YP_004459041.1| - 1.1e-156 522.6 0.0 1.5e-156 522.1 0.0 1.0 1 0 0 1 1 1 1 Molybdopterin-binding domain of aldehyde dehydrogenase Ald_Xan_dh_C PF01315.22 gi|332797541|ref|YP_004459041.1| - 3.4e-27 95.0 0.0 7.1e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BTAD PF03704.17 gi|332797541|ref|YP_004459041.1| - 0.04 14.4 0.0 0.087 13.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial transcriptional activator domain DUF1404 PF07185.11 gi|332797542|ref|YP_004459042.1| - 1.6e-63 213.4 14.2 1.8e-63 213.3 14.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1404) COX1 PF00115.20 gi|332797543|ref|YP_004459043.1| - 1.2e-69 235.3 63.4 1.5e-69 234.9 63.4 1.2 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF3671 PF12420.8 gi|332797543|ref|YP_004459043.1| - 6 7.0 5.5 1.1 9.3 0.9 2.2 2 0 0 2 2 2 0 Protein of unknown function COX2 PF00116.20 gi|332797544|ref|YP_004459044.1| - 0.00033 20.5 0.7 0.00055 19.8 0.7 1.4 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain SoxE PF06525.11 gi|332797545|ref|YP_004459045.1| - 1.8e-44 150.8 4.9 2.5e-44 150.3 4.9 1.2 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain LigB PF02900.18 gi|332797546|ref|YP_004459046.1| - 2.7e-10 39.8 0.0 4.6e-10 39.0 0.0 1.3 1 1 0 1 1 1 1 Catalytic LigB subunit of aromatic ring-opening dioxygenase BRCT PF00533.26 gi|332797546|ref|YP_004459046.1| - 0.032 14.6 0.0 0.047 14.1 0.0 1.2 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain OrfB_Zn_ribbon PF07282.11 gi|332797547|ref|YP_004459047.1| - 2.1e-22 78.8 1.8 3e-22 78.3 0.5 1.9 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797547|ref|YP_004459047.1| - 0.00078 19.7 1.6 0.0015 18.7 0.5 2.0 2 0 0 2 2 2 1 Probable transposase DUF2381 PF09544.10 gi|332797547|ref|YP_004459047.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2381) Ribosomal_L32p PF01783.23 gi|332797547|ref|YP_004459047.1| - 0.17 12.2 0.3 0.17 12.2 0.3 2.1 2 0 0 2 2 2 0 Ribosomal L32p protein family AIRS_C PF02769.22 gi|332797548|ref|YP_004459048.1| - 2e-06 28.0 0.1 7.9e-06 26.1 0.0 2.0 2 1 0 2 2 2 1 AIR synthase related protein, C-terminal domain DNA_ligase_OB PF03120.16 gi|332797548|ref|YP_004459048.1| - 0.085 12.8 0.1 0.32 10.9 0.0 2.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase OB-fold domain DrsE_2 PF13686.6 gi|332797549|ref|YP_004459049.1| - 2.4e-05 24.3 0.0 3.7e-05 23.7 0.0 1.3 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|332797549|ref|YP_004459049.1| - 0.021 15.2 0.0 0.059 13.7 0.0 1.6 1 1 0 1 1 1 0 DsrE/DsrF-like family Synaptobrevin PF00957.21 gi|332797550|ref|YP_004459050.1| - 3.8 7.4 7.6 6.9 6.5 7.6 1.4 1 0 0 1 1 1 0 Synaptobrevin SoxE PF06525.11 gi|332797551|ref|YP_004459051.1| - 7.7e-45 152.0 3.9 1.1e-44 151.6 3.9 1.2 1 0 0 1 1 1 1 Sulfocyanin (SoxE) domain PhoR PF11808.8 gi|332797552|ref|YP_004459052.1| - 1.6 9.2 4.1 2.1 8.8 0.0 3.1 2 2 1 4 4 4 0 Phosphate regulon sensor protein PhoR Rieske PF00355.26 gi|332797553|ref|YP_004459053.1| - 1.1e-08 34.8 0.0 1.8e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain UCR_Fe-S_N PF10399.9 gi|332797553|ref|YP_004459053.1| - 0.0091 15.3 0.2 0.017 14.5 0.2 1.4 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Molydop_binding PF01568.21 gi|332797554|ref|YP_004459054.1| - 3e-16 59.4 0.0 7.5e-16 58.1 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Rieske_3 PF18465.1 gi|332797554|ref|YP_004459054.1| - 4.1e-13 49.4 0.2 6.9e-06 26.2 0.5 2.9 2 0 0 2 2 2 2 Rieske 3Fe-4S Molybdopterin PF00384.22 gi|332797554|ref|YP_004459054.1| - 0.0017 17.4 0.0 0.0076 15.3 0.0 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Tudor-knot PF11717.8 gi|332797554|ref|YP_004459054.1| - 0.044 13.7 0.0 0.96 9.4 0.0 2.7 2 0 0 2 2 2 0 RNA binding activity-knot of a chromodomain DUF2173 PF09941.9 gi|332797556|ref|YP_004459056.1| - 4.4e-42 142.7 1.9 4.9e-42 142.5 1.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2173) DREV PF05219.12 gi|332797556|ref|YP_004459056.1| - 0.0073 15.4 0.0 0.0095 15.1 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase FlgM PF04316.13 gi|332797556|ref|YP_004459056.1| - 0.017 15.5 0.0 0.093 13.1 0.1 2.1 2 0 0 2 2 2 0 Anti-sigma-28 factor, FlgM Aldose_epim PF01263.20 gi|332797557|ref|YP_004459057.1| - 2.3e-43 148.6 0.0 3.9e-43 147.9 0.0 1.4 1 1 0 1 1 1 1 Aldose 1-epimerase SLAC1 PF03595.17 gi|332797558|ref|YP_004459058.1| - 4.1e-27 95.3 45.2 4.6e-27 95.1 45.2 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel MFS_1 PF07690.16 gi|332797560|ref|YP_004459060.1| - 4e-31 108.2 70.6 1.3e-25 90.1 46.6 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily AA_permease_2 PF13520.6 gi|332797562|ref|YP_004459062.1| - 6.9e-28 97.6 50.5 6.9e-28 97.6 50.5 2.0 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|332797562|ref|YP_004459062.1| - 1.2e-17 63.7 54.1 2.2e-17 62.8 53.9 1.6 1 1 0 1 1 1 1 Amino acid permease RAMP4 PF06624.12 gi|332797562|ref|YP_004459062.1| - 0.068 13.2 0.0 0.23 11.6 0.0 1.9 1 0 0 1 1 1 0 Ribosome associated membrane protein RAMP4 ATPase PF06745.13 gi|332797563|ref|YP_004459063.1| - 1.4e-85 286.3 0.1 2.1e-85 285.8 0.1 1.3 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|332797563|ref|YP_004459063.1| - 0.00018 21.1 0.0 0.00038 20.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|332797563|ref|YP_004459063.1| - 0.003 17.6 0.0 0.0073 16.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|332797563|ref|YP_004459063.1| - 0.016 14.3 0.0 0.034 13.2 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF2075 PF09848.9 gi|332797563|ref|YP_004459063.1| - 0.02 14.1 0.1 0.02 14.1 0.1 1.9 2 1 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) GvpD PF07088.11 gi|332797563|ref|YP_004459063.1| - 0.05 12.2 0.0 0.074 11.7 0.0 1.2 1 0 0 1 1 1 0 GvpD gas vesicle protein AAA_16 PF13191.6 gi|332797563|ref|YP_004459063.1| - 0.057 13.8 0.5 0.11 12.9 0.1 1.8 2 1 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|332797563|ref|YP_004459063.1| - 0.077 13.3 0.1 0.16 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|332797563|ref|YP_004459063.1| - 0.082 12.6 0.7 0.45 10.2 0.1 2.5 2 2 0 2 2 2 0 AAA domain Rad51 PF08423.11 gi|332797563|ref|YP_004459063.1| - 0.088 12.1 0.0 0.34 10.1 0.0 1.8 2 0 0 2 2 2 0 Rad51 DAG1 PF05454.11 gi|332797563|ref|YP_004459063.1| - 0.097 12.0 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Dystroglycan (Dystrophin-associated glycoprotein 1) MEDS PF14417.6 gi|332797563|ref|YP_004459063.1| - 0.14 12.0 0.1 0.33 10.8 0.0 1.7 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_19 PF13245.6 gi|332797563|ref|YP_004459063.1| - 0.2 12.0 1.0 0.42 11.0 1.0 1.9 1 1 0 1 1 1 0 AAA domain DUF973 PF06157.11 gi|332797564|ref|YP_004459064.1| - 4.3e-85 285.5 32.9 1.3e-82 277.4 32.9 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF973) Phage_holin_3_6 PF07332.11 gi|332797564|ref|YP_004459064.1| - 1.1 9.3 27.2 0.4 10.7 4.0 2.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Glyco_hydro_15 PF00723.21 gi|332797565|ref|YP_004459065.1| - 2.4e-54 184.8 0.0 1.5e-52 178.9 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_19 PF14559.6 gi|332797565|ref|YP_004459065.1| - 5.1e-05 23.7 0.1 0.0002 21.8 0.0 2.1 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_4 PF07721.14 gi|332797565|ref|YP_004459065.1| - 0.026 15.1 0.1 0.58 10.9 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Glyco_hydro_125 PF06824.11 gi|332797565|ref|YP_004459065.1| - 0.19 10.6 0.0 2.2 7.1 0.0 2.7 2 1 0 2 2 2 0 Metal-independent alpha-mannosidase (GH125) DUF3211 PF11485.8 gi|332797566|ref|YP_004459066.1| - 5.9e-40 136.6 1.9 6.5e-40 136.5 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3211) COXG PF06240.13 gi|332797566|ref|YP_004459066.1| - 0.12 12.1 0.0 1.1 9.1 0.0 2.1 1 1 0 1 1 1 0 Carbon monoxide dehydrogenase subunit G (CoxG) MFS_1 PF07690.16 gi|332797567|ref|YP_004459067.1| - 1.3e-18 67.1 45.9 1.3e-18 67.1 45.9 1.7 1 1 0 1 1 1 1 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797567|ref|YP_004459067.1| - 1.6e-14 53.6 31.1 4.5e-12 45.6 16.5 2.3 1 1 1 2 2 2 2 Sugar (and other) transporter Glycophorin_A PF01102.18 gi|332797567|ref|YP_004459067.1| - 0.11 12.8 0.4 2.4 8.4 0.1 2.6 2 0 0 2 2 2 0 Glycophorin A Phage_holin_2_4 PF16082.5 gi|332797567|ref|YP_004459067.1| - 0.96 9.2 7.7 3.6 7.4 1.4 3.0 2 1 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DUF1292 PF06949.11 gi|332797568|ref|YP_004459068.1| - 0.017 16.0 0.1 0.02 15.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1292) ParE_toxin PF05016.15 gi|332797569|ref|YP_004459069.1| - 3.7e-05 24.3 0.1 4.5e-05 24.0 0.1 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE TFIID-18kDa PF02269.16 gi|332797569|ref|YP_004459069.1| - 0.17 11.9 0.9 0.6 10.2 0.6 1.9 1 1 1 2 2 2 0 Transcription initiation factor IID, 18kD subunit Dr_adhesin PF12393.8 gi|332797571|ref|YP_004459071.1| - 8.2 6.9 11.1 0.46 10.8 4.2 2.3 2 0 0 2 2 2 0 Dr family adhesin SIR2 PF02146.17 gi|332797572|ref|YP_004459072.1| - 1.2e-53 181.7 0.0 1.4e-53 181.5 0.0 1.1 1 0 0 1 1 1 1 Sir2 family TPP_enzyme_M PF00205.22 gi|332797572|ref|YP_004459072.1| - 0.15 11.8 0.0 0.51 10.1 0.0 1.8 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain PIN PF01850.21 gi|332797573|ref|YP_004459073.1| - 0.012 16.1 0.0 0.013 16.0 0.0 1.1 1 0 0 1 1 1 0 PIN domain NTP_transf_2 PF01909.23 gi|332797574|ref|YP_004459074.1| - 2e-11 44.0 0.1 3e-11 43.4 0.1 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797574|ref|YP_004459074.1| - 5.5e-09 36.0 0.0 1.4e-08 34.7 0.0 1.9 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase HEPN PF05168.14 gi|332797575|ref|YP_004459075.1| - 1.6e-24 86.3 0.1 1.7e-24 86.2 0.1 1.0 1 0 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|332797576|ref|YP_004459076.1| - 7.3e-29 100.0 1.5 7.9e-29 99.9 1.5 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332797576|ref|YP_004459076.1| - 0.019 15.1 0.2 0.047 13.8 0.2 1.6 1 1 0 1 1 1 0 HEPN domain PaREP1 PF05942.11 gi|332797577|ref|YP_004459077.1| - 9.7e-20 70.6 1.4 1.3e-19 70.2 1.4 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Transcrip_reg PF01709.20 gi|332797577|ref|YP_004459077.1| - 0.0062 16.0 0.5 0.0077 15.7 0.5 1.0 1 0 0 1 1 1 1 Transcriptional regulator Spt20 PF12090.8 gi|332797577|ref|YP_004459077.1| - 0.037 13.6 0.1 0.15 11.7 0.1 1.8 1 1 0 1 1 1 0 Spt20 family HTH_47 PF16221.5 gi|332797577|ref|YP_004459077.1| - 0.049 13.2 0.1 0.094 12.3 0.1 1.6 1 1 0 1 1 1 0 winged helix-turn-helix AA_permease PF00324.21 gi|332797578|ref|YP_004459078.1| - 1.4e-12 47.0 45.6 4.9e-12 45.2 45.6 1.9 1 1 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|332797578|ref|YP_004459078.1| - 2.4e-09 36.5 50.4 3.5e-09 36.0 50.4 1.2 1 0 0 1 1 1 1 Amino acid permease Mito_carr PF00153.27 gi|332797578|ref|YP_004459078.1| - 0.025 14.5 0.3 0.025 14.5 0.3 2.1 2 0 0 2 2 2 0 Mitochondrial carrier protein OrfB_Zn_ribbon PF07282.11 gi|332797579|ref|YP_004459079.1| - 7.7e-20 70.6 1.3 2e-19 69.3 0.4 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|332797579|ref|YP_004459079.1| - 0.0011 19.2 0.1 0.0022 18.2 0.1 1.4 1 0 0 1 1 1 1 Probable transposase zf-RING_4 PF14570.6 gi|332797579|ref|YP_004459079.1| - 0.044 13.6 1.1 0.096 12.5 1.1 1.5 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain C1_1 PF00130.22 gi|332797579|ref|YP_004459079.1| - 0.078 12.9 0.8 0.19 11.6 0.8 1.6 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) YhfH PF14149.6 gi|332797579|ref|YP_004459079.1| - 0.12 12.4 0.5 0.63 10.1 0.3 2.1 2 0 0 2 2 2 0 YhfH-like protein Cut8 PF08559.10 gi|332797580|ref|YP_004459080.1| - 0.0066 16.1 0.4 0.0098 15.5 0.4 1.2 1 0 0 1 1 1 1 Cut8, nuclear proteasome tether protein Lys PF00062.20 gi|332797580|ref|YP_004459080.1| - 0.03 14.5 0.8 0.048 13.9 0.4 1.4 1 1 0 1 1 1 0 C-type lysozyme/alpha-lactalbumin family TM_helix PF05552.12 gi|332797583|ref|YP_004459083.1| - 1.8e-13 50.2 3.8 1.5e-09 37.7 2.0 5.0 6 0 0 6 6 6 2 Conserved TM helix NADH-u_ox-rdase PF10785.9 gi|332797583|ref|YP_004459083.1| - 0.42 11.3 2.2 40 5.0 0.0 3.4 2 1 1 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Yip1 PF04893.17 gi|332797585|ref|YP_004459085.1| - 0.0021 17.8 27.4 0.0022 17.7 26.3 1.5 1 1 0 1 1 1 1 Yip1 domain Phage_r1t_holin PF16945.5 gi|332797585|ref|YP_004459085.1| - 0.054 13.7 2.1 0.054 13.7 2.1 1.9 2 1 1 3 3 3 0 Putative lactococcus lactis phage r1t holin DUF2569 PF10754.9 gi|332797585|ref|YP_004459085.1| - 0.068 13.6 17.3 0.072 13.5 8.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2569) Herpes_LMP1 PF05297.11 gi|332797585|ref|YP_004459085.1| - 7.5 5.6 16.2 8.7 5.4 16.2 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF728 PF05304.12 gi|332797586|ref|YP_004459086.1| - 0.018 14.9 0.3 0.02 14.8 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF728) Band_7 PF01145.25 gi|332797589|ref|YP_004459089.1| - 4.2e-20 72.5 1.3 7.1e-20 71.8 1.3 1.4 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|332797589|ref|YP_004459089.1| - 3.5e-12 46.5 0.2 1.2e-11 44.8 0.2 1.7 1 1 0 1 1 1 1 SPFH domain-Band 7 family PIG-S PF10510.9 gi|332797590|ref|YP_004459090.1| - 0.0047 15.8 0.1 0.007 15.2 0.1 1.2 1 1 0 1 1 1 1 Phosphatidylinositol-glycan biosynthesis class S protein HTH_3 PF01381.22 gi|332797590|ref|YP_004459090.1| - 0.0054 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix DUF3834 PF12916.7 gi|332797590|ref|YP_004459090.1| - 0.019 14.2 0.5 0.035 13.4 0.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3834) PLU-1 PF08429.11 gi|332797590|ref|YP_004459090.1| - 0.07 12.3 0.4 0.12 11.6 0.4 1.3 1 1 0 1 1 1 0 PLU-1-like protein HTH_20 PF12840.7 gi|332797591|ref|YP_004459091.1| - 3.4e-07 30.2 0.0 9.6e-07 28.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|332797591|ref|YP_004459091.1| - 8.4e-06 25.6 0.0 2.2e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|332797591|ref|YP_004459091.1| - 0.0001 21.8 0.0 0.00022 20.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RHH_8 PF17723.1 gi|332797591|ref|YP_004459091.1| - 0.0002 21.5 0.0 0.00052 20.2 0.0 1.7 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family DUF4097 PF13349.6 gi|332797591|ref|YP_004459091.1| - 0.00058 19.3 0.7 0.0013 18.2 0.7 1.6 1 1 0 1 1 1 1 Putative adhesin DUF2807 PF10988.8 gi|332797591|ref|YP_004459091.1| - 0.024 14.4 0.7 0.085 12.7 0.7 1.9 1 1 0 1 1 1 0 Putative auto-transporter adhesin, head GIN domain HTH_34 PF13601.6 gi|332797591|ref|YP_004459091.1| - 0.038 14.2 0.0 1.4 9.1 0.0 2.7 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|332797591|ref|YP_004459091.1| - 0.039 13.9 0.2 0.094 12.7 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1540 PF07561.11 gi|332797592|ref|YP_004459092.1| - 0.082 13.2 2.2 0.16 12.3 2.2 1.6 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1540) PaREP1 PF05942.11 gi|332797593|ref|YP_004459093.1| - 7.9e-18 64.5 1.5 1e-17 64.1 1.5 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332797593|ref|YP_004459093.1| - 0.0026 17.9 3.7 0.018 15.1 3.7 1.9 1 1 0 1 1 1 1 HEPN domain PaREP1 PF05942.11 gi|332797594|ref|YP_004459094.1| - 3.5e-28 97.8 3.5 3.9e-28 97.7 3.5 1.0 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family Chalcone PF02431.15 gi|332797595|ref|YP_004459095.1| - 0.095 12.1 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Chalcone-flavanone isomerase FAD-oxidase_C PF02913.19 gi|332797595|ref|YP_004459095.1| - 0.096 12.3 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 FAD linked oxidases, C-terminal domain HEPN PF05168.14 gi|332797596|ref|YP_004459096.1| - 1.7e-09 37.9 6.0 1.9e-09 37.6 6.0 1.1 1 0 0 1 1 1 1 HEPN domain DUF2870 PF11069.8 gi|332797596|ref|YP_004459096.1| - 0.013 15.8 0.3 0.021 15.2 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2870) DUF2089 PF09862.9 gi|332797596|ref|YP_004459096.1| - 0.018 15.0 1.0 0.16 12.0 1.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2089) Anticodon_1 PF08264.13 gi|332797596|ref|YP_004459096.1| - 0.033 14.1 2.3 0.59 10.1 0.0 2.1 1 1 1 2 2 2 0 Anticodon-binding domain of tRNA Alkyl_sulf_dimr PF14863.6 gi|332797596|ref|YP_004459096.1| - 0.068 13.6 0.1 0.94 9.9 0.0 2.0 1 1 1 2 2 2 0 Alkyl sulfatase dimerisation DUF1866 PF08952.11 gi|332797597|ref|YP_004459097.1| - 0.0039 17.0 2.0 1.8 8.4 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1866) EnY2 PF10163.9 gi|332797597|ref|YP_004459097.1| - 0.0063 16.9 6.1 0.14 12.6 0.7 3.3 2 1 1 3 3 3 1 Transcription factor e(y)2 DNA_photolyase PF00875.18 gi|332797597|ref|YP_004459097.1| - 0.014 15.4 2.6 0.35 10.9 0.2 2.3 1 1 1 2 2 2 0 DNA photolyase Cas_Cas2CT1978 PF09707.10 gi|332797597|ref|YP_004459097.1| - 0.04 14.0 0.4 11 6.1 0.0 2.3 2 0 0 2 2 2 0 CRISPR-associated protein (Cas_Cas2CT1978) DUF1488 PF07369.11 gi|332797597|ref|YP_004459097.1| - 0.082 12.9 0.1 0.2 11.7 0.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1488) MHB PF16525.5 gi|332797597|ref|YP_004459097.1| - 0.14 12.4 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Haemophore, haem-binding DUF1904 PF08921.11 gi|332797597|ref|YP_004459097.1| - 0.15 12.4 2.4 6.9 7.0 0.2 3.3 2 2 1 3 3 3 0 Domain of unknown function (DUF1904) DUF1505 PF07403.11 gi|332797597|ref|YP_004459097.1| - 0.16 12.1 4.8 21 5.4 2.8 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1505) LacI PF00356.21 gi|332797597|ref|YP_004459097.1| - 0.36 10.7 9.5 6.4 6.7 0.4 3.7 3 1 1 4 4 4 0 Bacterial regulatory proteins, lacI family DUF5405 PF17399.2 gi|332797597|ref|YP_004459097.1| - 0.39 11.0 8.8 9 6.6 1.4 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF5405) Remorin_N PF03766.13 gi|332797597|ref|YP_004459097.1| - 1.3 9.1 12.2 3.3 7.8 0.5 3.2 2 1 1 3 3 3 0 Remorin, N-terminal region YtxH PF12732.7 gi|332797597|ref|YP_004459097.1| - 1.6 9.3 4.4 18 6.0 4.4 2.6 1 1 0 1 1 1 0 YtxH-like protein DUF1890 PF09001.11 gi|332797597|ref|YP_004459097.1| - 2.5 8.5 6.4 1.2 9.5 3.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1890) DZR PF12773.7 gi|332797598|ref|YP_004459098.1| - 1.5e-17 63.4 27.5 3.2e-10 39.9 1.9 2.3 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|332797598|ref|YP_004459098.1| - 4.9e-16 57.9 24.4 4.4e-06 26.2 3.6 3.2 3 0 0 3 3 3 3 zinc-ribbon domain UPF0547 PF10571.9 gi|332797598|ref|YP_004459098.1| - 3.4e-10 39.8 23.9 0.00025 21.1 3.5 3.9 3 1 0 3 3 3 3 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|332797598|ref|YP_004459098.1| - 1.6e-09 36.8 20.6 0.00031 20.0 2.2 3.7 3 1 0 3 3 3 3 zinc-ribbon domain zf-RanBP PF00641.18 gi|332797598|ref|YP_004459098.1| - 1.9e-09 36.6 11.5 0.00037 19.7 0.2 3.2 3 0 0 3 3 3 2 Zn-finger in Ran binding protein and others zf-tcix PF14952.6 gi|332797598|ref|YP_004459098.1| - 1.4e-07 31.0 22.6 0.0031 17.1 2.2 3.6 2 2 1 3 3 3 3 Putative treble-clef, zinc-finger, Zn-binding OrfB_Zn_ribbon PF07282.11 gi|332797598|ref|YP_004459098.1| - 1.4e-05 24.9 16.3 0.096 12.6 1.2 4.0 2 1 1 3 3 3 2 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|332797598|ref|YP_004459098.1| - 0.00093 19.1 21.9 2.7 8.0 0.2 6.1 6 0 0 6 6 6 2 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|332797598|ref|YP_004459098.1| - 0.002 17.6 22.4 0.0075 15.8 1.3 4.5 3 2 0 3 3 3 2 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|332797598|ref|YP_004459098.1| - 0.01 15.9 25.5 0.14 12.3 3.2 4.8 3 2 1 4 4 4 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|332797598|ref|YP_004459098.1| - 0.03 14.2 16.0 0.075 13.0 1.5 4.0 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 zinc-ribbon_6 PF10005.9 gi|332797598|ref|YP_004459098.1| - 0.049 14.3 8.4 0.39 11.4 0.1 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Spt4 PF06093.13 gi|332797598|ref|YP_004459098.1| - 0.053 13.6 10.6 0.2 11.7 0.1 3.0 2 1 1 3 3 3 0 Spt4/RpoE2 zinc finger DUF2318 PF10080.9 gi|332797598|ref|YP_004459098.1| - 0.066 13.3 9.8 2.4 8.3 3.9 3.0 2 1 1 3 3 3 0 Predicted membrane protein (DUF2318) zf-NADH-PPase PF09297.11 gi|332797598|ref|YP_004459098.1| - 0.08 12.6 17.0 7.4 6.3 0.0 5.7 6 0 0 6 6 6 0 NADH pyrophosphatase zinc ribbon domain HypA PF01155.19 gi|332797598|ref|YP_004459098.1| - 0.099 12.7 0.9 0.099 12.7 0.9 3.2 1 1 3 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_15 PF17032.5 gi|332797598|ref|YP_004459098.1| - 0.1 13.4 17.2 2.2 9.1 3.7 3.1 1 1 2 3 3 3 0 zinc-ribbon family TackOD1 PF18551.1 gi|332797598|ref|YP_004459098.1| - 0.17 11.6 12.5 0.94 9.1 5.9 2.9 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 NMD3 PF04981.13 gi|332797598|ref|YP_004459098.1| - 0.35 10.3 7.3 0.85 9.0 1.0 2.6 1 1 2 3 3 3 0 NMD3 family PhnA_Zn_Ribbon PF08274.12 gi|332797598|ref|YP_004459098.1| - 0.36 10.8 15.1 1.5 8.8 0.4 4.4 4 0 0 4 4 4 0 PhnA Zinc-Ribbon DUF2688 PF10892.8 gi|332797598|ref|YP_004459098.1| - 0.37 10.3 0.1 0.37 10.3 0.1 4.1 4 1 1 5 5 5 0 Protein of unknown function (DUF2688) PHF5 PF03660.14 gi|332797598|ref|YP_004459098.1| - 0.42 10.8 10.5 0.43 10.8 3.1 2.2 2 0 0 2 2 2 0 PHF5-like protein zn-ribbon_14 PF16503.5 gi|332797598|ref|YP_004459098.1| - 0.59 9.7 27.0 0.71 9.4 0.2 5.9 6 0 0 6 6 6 0 Zinc-ribbon Zn-C2H2_12 PF18112.1 gi|332797598|ref|YP_004459098.1| - 0.7 10.4 0.2 0.7 10.4 0.2 3.6 4 0 0 4 4 4 0 Autophagy receptor zinc finger-C2H2 domain CIAPIN1 PF05093.13 gi|332797598|ref|YP_004459098.1| - 0.87 10.1 5.7 0.97 10.0 0.4 2.4 2 0 0 2 2 2 0 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis RNA_POL_M_15KD PF02150.16 gi|332797598|ref|YP_004459098.1| - 0.98 9.4 0.1 0.98 9.4 0.1 5.3 2 2 3 5 5 4 0 RNA polymerases M/15 Kd subunit RecR PF02132.15 gi|332797598|ref|YP_004459098.1| - 1.1 8.9 21.1 3.1 7.4 1.9 4.6 3 2 0 3 3 3 0 RecR protein Ribosomal_L37e PF01907.19 gi|332797598|ref|YP_004459098.1| - 1.4 9.1 21.4 0.19 11.9 1.3 4.2 2 2 2 4 4 4 0 Ribosomal protein L37e NinF PF05810.12 gi|332797598|ref|YP_004459098.1| - 2.3 8.2 5.8 1.1 9.1 0.3 2.4 2 1 0 2 2 2 0 NinF protein A2L_zn_ribbon PF08792.10 gi|332797598|ref|YP_004459098.1| - 2.9 7.7 24.6 9.6 6.1 0.3 5.4 5 1 0 5 5 5 0 A2L zinc ribbon domain IBR PF01485.21 gi|332797598|ref|YP_004459098.1| - 3.6 7.9 16.7 27 5.1 7.7 3.4 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain DNA_RNApol_7kD PF03604.13 gi|332797598|ref|YP_004459098.1| - 4.5 7.0 24.4 0.52 10.0 2.7 4.6 3 3 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit zf-UBP PF02148.19 gi|332797598|ref|YP_004459098.1| - 4.6 7.6 10.0 1.9 8.8 0.2 3.2 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Baculo_ME53 PF06061.11 gi|332797598|ref|YP_004459098.1| - 4.7 6.3 8.5 0.62 9.2 3.0 2.1 2 1 0 2 2 2 0 Baculoviridae ME53 YhfH PF14149.6 gi|332797598|ref|YP_004459098.1| - 5.5 7.1 17.4 24 5.0 0.2 5.6 5 1 1 6 6 6 0 YhfH-like protein zf_UBZ PF18439.1 gi|332797598|ref|YP_004459098.1| - 6.1 6.5 24.4 6.6 6.4 0.3 5.5 3 2 3 6 6 6 0 Ubiquitin-Binding Zinc Finger Ribosomal_L32p PF01783.23 gi|332797598|ref|YP_004459098.1| - 7.3 6.9 20.6 5.1 7.4 3.2 3.8 2 2 1 3 3 3 0 Ribosomal L32p protein family DHHC PF01529.20 gi|332797598|ref|YP_004459098.1| - 7.4 6.7 20.5 1.9 8.6 0.9 3.8 2 1 2 4 4 4 0 DHHC palmitoyltransferase Rieske PF00355.26 gi|332797599|ref|YP_004459099.1| - 3e-09 36.7 0.0 3.5e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|332797599|ref|YP_004459099.1| - 0.0037 17.2 0.0 0.0039 17.1 0.0 1.1 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Pro-kuma_activ PF09286.11 gi|332797600|ref|YP_004459100.1| - 1.5e-14 54.5 0.0 4.5e-14 53.0 0.0 1.8 2 0 0 2 2 2 1 Pro-kumamolisin, activation domain Big_7 PF17957.1 gi|332797600|ref|YP_004459100.1| - 7e-11 42.7 0.5 7e-11 42.7 0.5 3.7 3 0 0 3 3 3 1 Bacterial Ig domain Peptidase_S8 PF00082.22 gi|332797600|ref|YP_004459100.1| - 9.5e-06 25.1 1.3 3.3e-05 23.3 1.3 1.9 1 0 0 1 1 1 1 Subtilase family MG2 PF01835.19 gi|332797600|ref|YP_004459100.1| - 0.0001 22.7 0.0 0.0054 17.2 0.0 3.2 2 2 1 3 3 3 1 MG2 domain DUF4064 PF13273.6 gi|332797600|ref|YP_004459100.1| - 0.0055 17.0 0.6 0.027 14.7 0.6 2.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4064) PASTA PF03793.19 gi|332797600|ref|YP_004459100.1| - 0.015 15.1 0.1 0.093 12.6 0.0 2.5 2 0 0 2 2 2 0 PASTA domain TcfC PF16967.5 gi|332797600|ref|YP_004459100.1| - 0.032 13.7 0.1 0.091 12.3 0.1 1.7 1 0 0 1 1 1 0 E-set like domain ChitinaseA_N PF08329.10 gi|332797600|ref|YP_004459100.1| - 0.11 12.2 0.1 1.1 8.8 0.0 2.4 2 0 0 2 2 2 0 Chitinase A, N-terminal domain DUF350 PF03994.14 gi|332797601|ref|YP_004459101.1| - 0.0068 16.5 0.2 0.0068 16.5 0.2 1.4 2 0 0 2 2 2 1 Domain of Unknown Function (DUF350) Sugar_tr PF00083.24 gi|332797602|ref|YP_004459102.1| - 6.1e-50 170.4 29.8 4.9e-49 167.4 29.8 1.9 1 1 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|332797602|ref|YP_004459102.1| - 2.2e-39 135.4 39.7 5e-28 98.0 20.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|332797602|ref|YP_004459102.1| - 0.00023 20.6 1.3 0.00023 20.6 1.3 2.4 2 1 0 2 2 2 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|332797602|ref|YP_004459102.1| - 0.013 13.8 14.3 0.031 12.6 0.9 3.0 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family TrmB PF01978.19 gi|332797603|ref|YP_004459103.1| - 2.2e-09 37.1 0.2 3.1e-09 36.6 0.2 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|332797603|ref|YP_004459103.1| - 1.1e-08 34.9 0.0 1.7e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|332797603|ref|YP_004459103.1| - 3.6e-06 26.8 0.9 4.2e-06 26.6 0.9 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|332797603|ref|YP_004459103.1| - 4.9e-06 27.0 0.1 7e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|332797603|ref|YP_004459103.1| - 8.2e-06 25.7 0.3 1.2e-05 25.1 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|332797603|ref|YP_004459103.1| - 0.0001 21.8 0.7 0.00015 21.3 0.7 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|332797603|ref|YP_004459103.1| - 0.00035 20.7 0.1 0.00061 19.9 0.1 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|332797603|ref|YP_004459103.1| - 0.00039 20.3 1.0 0.00058 19.8 0.4 1.5 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|332797603|ref|YP_004459103.1| - 0.00053 20.0 0.0 0.00079 19.4 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.13 gi|332797603|ref|YP_004459103.1| - 0.0017 18.2 1.0 0.0028 17.5 0.5 1.6 2 0 0 2 2 2 1 RuvB C-terminal winged helix domain Fe_dep_repress PF01325.19 gi|332797603|ref|YP_004459103.1| - 0.0021 18.2 0.0 0.0035 17.5 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|332797603|ref|YP_004459103.1| - 0.0023 17.6 0.1 0.0041 16.8 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|332797603|ref|YP_004459103.1| - 0.0033 17.2 0.9 0.0058 16.5 0.9 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|332797603|ref|YP_004459103.1| - 0.0045 16.6 0.1 0.0088 15.7 0.1 1.5 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Penicillinase_R PF03965.16 gi|332797603|ref|YP_004459103.1| - 0.0047 17.3 0.1 0.0058 17.0 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor PuR_N PF09182.10 gi|332797603|ref|YP_004459103.1| - 0.0062 16.4 0.3 0.12 12.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial purine repressor, N-terminal HTH_IclR PF09339.10 gi|332797603|ref|YP_004459103.1| - 0.015 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4423 PF14394.6 gi|332797603|ref|YP_004459103.1| - 0.026 14.2 0.2 0.042 13.5 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|332797603|ref|YP_004459103.1| - 0.098 13.0 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.6 gi|332797603|ref|YP_004459103.1| - 0.12 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_47 PF16221.5 gi|332797603|ref|YP_004459103.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 winged helix-turn-helix TrmB PF01978.19 gi|332797604|ref|YP_004459104.1| - 3.4e-10 39.7 0.8 7.1e-10 38.6 0.3 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|332797604|ref|YP_004459104.1| - 5.3e-08 32.7 0.5 9.9e-08 31.8 0.5 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|332797604|ref|YP_004459104.1| - 1.2e-06 28.3 0.0 1.9e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|332797604|ref|YP_004459104.1| - 1.1e-05 24.9 0.6 2e-05 24.0 0.6 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332797604|ref|YP_004459104.1| - 2.3e-05 24.2 0.1 4.2e-05 23.4 0.1 1.4 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|332797604|ref|YP_004459104.1| - 6.2e-05 22.6 0.2 0.00013 21.5 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family Fe_dep_repress PF01325.19 gi|332797604|ref|YP_004459104.1| - 6.6e-05 23.0 0.1 0.00011 22.4 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.17 gi|332797604|ref|YP_004459104.1| - 0.0001 22.1 0.2 0.00014 21.7 0.2 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit GerE PF00196.19 gi|332797604|ref|YP_004459104.1| - 0.00044 19.7 0.3 0.0023 17.5 0.1 2.3 3 0 0 3 3 2 1 Bacterial regulatory proteins, luxR family Penicillinase_R PF03965.16 gi|332797604|ref|YP_004459104.1| - 0.00054 20.3 0.1 0.00077 19.8 0.1 1.3 1 0 0 1 1 1 1 Penicillinase repressor RuvB_C PF05491.13 gi|332797604|ref|YP_004459104.1| - 0.00063 19.6 0.2 0.0012 18.7 0.2 1.4 1 0 0 1 1 1 1 RuvB C-terminal winged helix domain HTH_20 PF12840.7 gi|332797604|ref|YP_004459104.1| - 0.00065 19.7 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|332797604|ref|YP_004459104.1| - 0.00077 19.2 0.1 0.0014 18.3 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.6 gi|332797604|ref|YP_004459104.1| - 0.0024 17.6 0.0 0.0057 16.4 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.6 gi|332797604|ref|YP_004459104.1| - 0.0031 17.5 0.9 0.007 16.3 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|332797604|ref|YP_004459104.1| - 0.0056 16.6 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|332797604|ref|YP_004459104.1| - 0.0062 16.9 0.1 0.012 15.9 0.1 1.5 1 0 0 1 1 1 1 Transcriptional regulator FeoC PF09012.10 gi|332797604|ref|YP_004459104.1| - 0.013 15.5 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_27 PF13463.6 gi|332797604|ref|YP_004459104.1| - 0.013 15.9 0.1 0.027 15.0 0.0 1.5 2 0 0 2 2 1 0 Winged helix DNA-binding domain DUF2089 PF09862.9 gi|332797604|ref|YP_004459104.1| - 0.017 15.1 0.1 0.019 15.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) Dimerisation PF08100.11 gi|332797604|ref|YP_004459104.1| - 0.028 14.4 0.1 0.057 13.4 0.1 1.5 1 0 0 1 1 1 0 Dimerisation domain HTH_5 PF01022.20 gi|332797604|ref|YP_004459104.1| - 0.033 14.0 0.2 0.069 13.0 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4 PF04545.16 gi|332797604|ref|YP_004459104.1| - 0.036 13.6 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.6 gi|332797604|ref|YP_004459104.1| - 0.038 13.7 0.0 0.089 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|332797604|ref|YP_004459104.1| - 0.043 13.8 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.6 gi|332797604|ref|YP_004459104.1| - 0.047 13.8 0.0 0.07 13.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_6 PF01418.17 gi|332797604|ref|YP_004459104.1| - 0.052 13.5 0.3 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain, rpiR family RPA_C PF08784.11 gi|332797604|ref|YP_004459104.1| - 0.058 14.1 0.1 0.23 12.1 0.0 1.8 1 1 1 2 2 2 0 Replication protein A C terminal Dimerisation2 PF16864.5 gi|332797604|ref|YP_004459104.1| - 0.063 13.3 0.0 0.081 12.9 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain FUR PF01475.19 gi|332797604|ref|YP_004459104.1| - 0.087 13.0 0.1 0.3 11.2 0.0 1.8 1 1 1 2 2 2 0 Ferric uptake regulator family HTH_AsnC-type PF13404.6 gi|332797604|ref|YP_004459104.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|332797604|ref|YP_004459104.1| - 0.11 12.2 0.1 0.35 10.6 0.0 1.9 2 0 0 2 2 1 0 Sigma-70, region 4 Cyt_bd_oxida_I PF01654.17 gi|332797605|ref|YP_004459105.1| - 3.8e-76 256.4 27.0 4.7e-76 256.1 27.0 1.1 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I Cyt_bd_oxida_II PF02322.15 gi|332797606|ref|YP_004459106.1| - 6.7 6.0 46.5 11 5.3 46.5 1.4 1 1 0 1 1 1 0 Cytochrome bd terminal oxidase subunit II ABM PF03992.16 gi|332797607|ref|YP_004459107.1| - 3.7e-14 52.6 0.0 4.4e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase SOR PF07682.11 gi|332797607|ref|YP_004459107.1| - 1.3e-05 24.2 0.6 0.01 14.8 0.2 2.1 1 1 1 2 2 2 2 Sulphur oxygenase reductase DUF4936 PF16290.5 gi|332797607|ref|YP_004459107.1| - 0.012 16.3 0.0 0.014 16.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4936) DUF4188 PF13826.6 gi|332797607|ref|YP_004459107.1| - 0.05 13.9 0.0 0.061 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4188) ODR4-like PF14778.6 gi|332797607|ref|YP_004459107.1| - 0.16 10.9 0.0 0.16 10.9 0.0 1.1 1 0 0 1 1 1 0 Olfactory receptor 4-like Glyco_tranf_2_3 PF13641.6 gi|332797609|ref|YP_004459109.1| - 4.5e-16 59.4 0.0 6.7e-16 58.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|332797609|ref|YP_004459109.1| - 1.3e-11 44.8 0.3 3e-11 43.6 0.3 1.8 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|332797609|ref|YP_004459109.1| - 1.6e-11 44.3 0.0 2.8e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|332797609|ref|YP_004459109.1| - 1.1e-10 41.3 0.0 3e-10 39.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase family 21 Chitin_synth_2 PF03142.15 gi|332797609|ref|YP_004459109.1| - 0.00026 19.8 0.2 0.0024 16.5 0.0 2.6 2 1 0 2 2 2 1 Chitin synthase NTP_transf_2 PF01909.23 gi|332797610|ref|YP_004459110.1| - 2.2e-10 40.7 2.1 5e-10 39.6 2.1 1.7 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797610|ref|YP_004459110.1| - 7.8e-09 35.5 0.6 1.8e-08 34.3 0.6 1.8 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DUF294 PF03445.13 gi|332797610|ref|YP_004459110.1| - 0.00028 20.7 0.0 0.0072 16.1 0.0 2.0 2 0 0 2 2 2 1 Putative nucleotidyltransferase DUF294 Flavodoxin_1 PF00258.25 gi|332797610|ref|YP_004459110.1| - 0.16 12.1 0.0 0.2 11.8 0.0 1.5 1 1 0 1 1 1 0 Flavodoxin HEPN PF05168.14 gi|332797611|ref|YP_004459111.1| - 1.2e-19 70.5 0.4 1.5e-19 70.3 0.4 1.0 1 0 0 1 1 1 1 HEPN domain Peptidase_M1 PF01433.20 gi|332797612|ref|YP_004459112.1| - 4.3e-45 154.0 5.1 4.3e-45 154.0 5.1 1.8 2 0 0 2 2 2 1 Peptidase family M1 domain HEAT_2 PF13646.6 gi|332797612|ref|YP_004459112.1| - 1.9e-27 95.5 0.0 9.8e-09 35.5 0.0 3.9 1 1 2 4 4 4 4 HEAT repeats Peptidase_M1_N PF17900.1 gi|332797612|ref|YP_004459112.1| - 8e-13 49.0 0.0 2.1e-12 47.6 0.0 1.7 1 1 0 1 1 1 1 Peptidase M1 N-terminal domain HEAT_PBS PF03130.16 gi|332797612|ref|YP_004459112.1| - 0.00017 22.0 0.0 45 5.1 0.0 6.0 8 0 0 8 8 8 0 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|332797612|ref|YP_004459112.1| - 0.00032 20.7 0.0 24 5.5 0.0 4.7 6 0 0 6 6 6 1 HEAT repeat Peptidase_M61 PF05299.12 gi|332797612|ref|YP_004459112.1| - 0.19 12.1 2.5 2.9 8.3 2.2 2.4 1 1 0 1 1 1 0 M61 glycyl aminopeptidase ydhR PF08803.11 gi|332797613|ref|YP_004459113.1| - 0.026 14.4 0.0 0.12 12.3 0.0 2.1 1 0 0 1 1 1 0 Putative mono-oxygenase ydhR FAM184 PF15665.5 gi|332797613|ref|YP_004459113.1| - 0.04 13.7 15.0 0.074 12.8 15.0 1.4 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B Baculo_PEP_C PF04513.12 gi|332797613|ref|YP_004459113.1| - 0.056 13.5 10.3 0.056 13.5 4.3 3.1 2 1 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 gi|332797613|ref|YP_004459113.1| - 0.21 10.9 7.0 0.32 10.3 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Nup54 PF13874.6 gi|332797613|ref|YP_004459113.1| - 0.73 9.9 11.9 1.9 8.6 1.4 3.2 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 DUF3106 PF11304.8 gi|332797613|ref|YP_004459113.1| - 1.4 9.4 5.0 2.3 8.7 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3106) HTH_34 PF13601.6 gi|332797614|ref|YP_004459114.1| - 0.0016 18.6 0.3 0.0042 17.2 0.1 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain Macoilin PF09726.9 gi|332797614|ref|YP_004459114.1| - 0.0025 16.5 1.1 0.0031 16.2 1.1 1.0 1 0 0 1 1 1 1 Macoilin family BLACT_WH PF17778.1 gi|332797614|ref|YP_004459114.1| - 0.0025 17.7 1.6 0.0086 16.0 0.9 2.3 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain DUF4168 PF13767.6 gi|332797614|ref|YP_004459114.1| - 0.033 15.4 1.6 0.048 14.8 0.7 1.7 2 1 0 2 2 2 0 Domain of unknown function (DUF4168) FeoC PF09012.10 gi|332797614|ref|YP_004459114.1| - 0.035 14.2 0.1 0.086 12.9 0.1 1.7 1 0 0 1 1 1 0 FeoC like transcriptional regulator FumaraseC_C PF10415.9 gi|332797614|ref|YP_004459114.1| - 0.042 14.3 0.3 0.34 11.4 0.2 2.2 2 0 0 2 2 2 0 Fumarase C C-terminus SelB-wing_2 PF09106.11 gi|332797614|ref|YP_004459114.1| - 0.054 13.7 0.1 8 6.7 0.1 2.5 2 0 0 2 2 2 0 Elongation factor SelB, winged helix HTH_15 PF12324.8 gi|332797614|ref|YP_004459114.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of alkylmercury lyase AAA_22 PF13401.6 gi|332797615|ref|YP_004459115.1| - 0.00019 21.7 0.2 0.0023 18.2 0.0 2.8 2 2 1 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|332797615|ref|YP_004459115.1| - 0.00022 21.7 0.0 0.0006 20.2 0.0 1.8 1 0 0 1 1 1 1 AAA ATPase domain AAA_11 PF13086.6 gi|332797615|ref|YP_004459115.1| - 0.0004 20.3 1.0 0.82 9.4 0.0 2.9 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|332797615|ref|YP_004459115.1| - 0.0017 18.9 0.1 0.039 14.5 0.1 2.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|332797615|ref|YP_004459115.1| - 0.0018 18.6 0.3 0.024 14.9 0.0 2.6 3 1 0 3 3 3 1 AAA domain MCM PF00493.23 gi|332797615|ref|YP_004459115.1| - 0.0023 17.1 0.0 0.0049 16.0 0.0 1.5 1 0 0 1 1 1 1 MCM P-loop domain Img2 PF05046.14 gi|332797615|ref|YP_004459115.1| - 0.0025 18.1 1.2 0.67 10.3 0.1 2.8 3 0 0 3 3 2 1 Mitochondrial large subunit ribosomal protein (Img2) NB-ARC PF00931.22 gi|332797615|ref|YP_004459115.1| - 0.0054 16.0 0.7 0.064 12.4 0.0 2.3 2 0 0 2 2 2 1 NB-ARC domain AAA_14 PF13173.6 gi|332797615|ref|YP_004459115.1| - 0.0062 16.6 1.3 0.066 13.2 0.1 3.0 3 0 0 3 3 3 1 AAA domain NTPase_1 PF03266.15 gi|332797615|ref|YP_004459115.1| - 0.0081 16.1 0.5 0.045 13.7 0.1 2.4 3 0 0 3 3 3 1 NTPase AAA_30 PF13604.6 gi|332797615|ref|YP_004459115.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|332797615|ref|YP_004459115.1| - 0.013 15.5 0.8 0.089 12.7 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase ABC_tran PF00005.27 gi|332797615|ref|YP_004459115.1| - 0.015 15.8 0.8 0.063 13.8 0.0 2.3 2 1 0 2 2 2 0 ABC transporter CTK3 PF12243.8 gi|332797615|ref|YP_004459115.1| - 0.018 15.1 0.5 0.051 13.6 0.5 1.7 1 0 0 1 1 1 0 CTD kinase subunit gamma CTK3 AAA_17 PF13207.6 gi|332797615|ref|YP_004459115.1| - 0.018 15.5 0.1 0.46 10.9 0.0 3.0 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|332797615|ref|YP_004459115.1| - 0.033 14.6 0.5 0.14 12.5 0.2 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.15 gi|332797615|ref|YP_004459115.1| - 0.036 13.4 0.0 0.12 11.7 0.0 1.9 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain NACHT PF05729.12 gi|332797615|ref|YP_004459115.1| - 0.048 13.6 0.2 0.2 11.5 0.0 2.1 3 0 0 3 3 3 0 NACHT domain CPG4 PF15481.6 gi|332797615|ref|YP_004459115.1| - 0.061 14.0 0.5 0.5 11.0 0.6 2.2 2 0 0 2 2 2 0 Chondroitin proteoglycan 4 RNA_helicase PF00910.22 gi|332797615|ref|YP_004459115.1| - 0.076 13.4 0.0 0.3 11.5 0.0 2.0 2 0 0 2 2 1 0 RNA helicase Fib_alpha PF08702.10 gi|332797615|ref|YP_004459115.1| - 3.6 7.8 10.8 0.63 10.2 2.1 2.7 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family PaREP1 PF05942.11 gi|332797616|ref|YP_004459116.1| - 4.6e-06 26.5 0.3 8.3e-06 25.7 0.3 1.6 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF3669 PF12417.8 gi|332797616|ref|YP_004459116.1| - 0.1 12.8 0.2 0.23 11.7 0.0 1.6 2 0 0 2 2 2 0 Zinc finger protein Bromo_MP PF01573.16 gi|332797616|ref|YP_004459116.1| - 0.17 11.2 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 Bromovirus movement protein AAA_14 PF13173.6 gi|332797617|ref|YP_004459117.1| - 2.3e-29 102.1 2.0 1.3e-28 99.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF4143 PF13635.6 gi|332797617|ref|YP_004459117.1| - 2.5e-11 43.8 2.0 5.1e-11 42.8 0.1 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4143) PCI PF01399.27 gi|332797617|ref|YP_004459117.1| - 0.035 14.6 0.2 0.09 13.3 0.2 1.7 1 0 0 1 1 1 0 PCI domain MMR_HSR1 PF01926.23 gi|332797617|ref|YP_004459117.1| - 0.14 12.3 0.0 0.51 10.4 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|332797617|ref|YP_004459117.1| - 0.22 11.3 0.2 0.68 9.7 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain DUF4441 PF14536.6 gi|332797617|ref|YP_004459117.1| - 0.22 11.7 4.1 3 8.1 0.0 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4441) NTP_transf_2 PF01909.23 gi|332797618|ref|YP_004459118.1| - 1.1e-10 41.7 0.3 1.8e-10 40.9 0.2 1.5 1 1 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797618|ref|YP_004459118.1| - 2.9e-10 40.1 0.2 5e-10 39.3 0.1 1.4 1 1 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|332797618|ref|YP_004459118.1| - 0.00027 21.1 0.0 0.00032 20.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm MAGSP PF03082.14 gi|332797618|ref|YP_004459118.1| - 0.045 13.4 0.0 0.05 13.2 0.0 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein HEPN PF05168.14 gi|332797619|ref|YP_004459119.1| - 7.3e-11 42.2 1.2 8e-11 42.1 1.2 1.0 1 0 0 1 1 1 1 HEPN domain TPR_8 PF13181.6 gi|332797619|ref|YP_004459119.1| - 0.044 14.0 0.8 0.063 13.5 0.8 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat HEPN_AbiV PF18728.1 gi|332797619|ref|YP_004459119.1| - 0.067 13.4 0.5 0.067 13.4 0.5 1.1 1 0 0 1 1 1 0 AbiV TPP_enzyme_C PF02775.21 gi|332797620|ref|YP_004459120.1| - 1.8e-18 66.8 0.1 2.5e-18 66.3 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DXP_synthase_N PF13292.6 gi|332797620|ref|YP_004459120.1| - 0.0017 17.6 0.0 0.0025 17.1 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase E1_dh PF00676.20 gi|332797620|ref|YP_004459120.1| - 0.0054 15.7 0.0 0.0069 15.4 0.0 1.2 1 0 0 1 1 1 1 Dehydrogenase E1 component POR_N PF01855.19 gi|332797621|ref|YP_004459121.1| - 5.2e-71 239.0 0.2 6.6e-71 238.7 0.2 1.1 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg PFOR_II PF17147.4 gi|332797621|ref|YP_004459121.1| - 1.5e-33 115.1 0.1 3e-33 114.2 0.1 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|332797621|ref|YP_004459121.1| - 1.4e-06 28.2 0.0 3.6e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain Fer4 PF00037.27 gi|332797622|ref|YP_004459122.1| - 6.8e-16 57.3 14.5 2.3e-08 33.5 3.7 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|332797622|ref|YP_004459122.1| - 8.2e-12 44.7 13.9 1.2e-06 28.4 2.4 2.1 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332797622|ref|YP_004459122.1| - 4.1e-10 39.7 8.8 5.4e-10 39.2 8.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797622|ref|YP_004459122.1| - 5.9e-10 39.1 23.0 4.5e-07 29.9 12.6 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797622|ref|YP_004459122.1| - 1e-09 38.8 10.0 2.9e-09 37.4 10.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332797622|ref|YP_004459122.1| - 2.8e-08 34.6 9.3 0.00083 20.2 3.4 2.1 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|332797622|ref|YP_004459122.1| - 2.8e-08 33.4 12.1 0.00073 19.5 2.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|332797622|ref|YP_004459122.1| - 5.8e-08 32.8 22.1 3.4e-06 27.1 12.6 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332797622|ref|YP_004459122.1| - 3.6e-07 30.2 12.9 0.001 19.4 1.2 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|332797622|ref|YP_004459122.1| - 1.9e-06 28.3 5.5 0.0028 18.2 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332797622|ref|YP_004459122.1| - 3.1e-06 27.5 4.5 0.021 15.3 0.3 2.1 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332797622|ref|YP_004459122.1| - 1.2e-05 26.0 8.1 0.0031 18.2 1.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|332797622|ref|YP_004459122.1| - 0.00038 20.9 10.8 0.1 13.1 2.0 2.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|332797622|ref|YP_004459122.1| - 0.0021 18.9 17.7 0.21 12.6 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|332797622|ref|YP_004459122.1| - 0.0082 16.3 9.0 0.081 13.1 9.0 1.8 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|332797622|ref|YP_004459122.1| - 0.043 14.7 1.6 0.043 14.7 1.6 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain POR PF01558.18 gi|332797623|ref|YP_004459123.1| - 2.3e-38 132.0 0.1 2.8e-38 131.8 0.1 1.0 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase AA_permease PF00324.21 gi|332797624|ref|YP_004459124.1| - 5e-21 74.8 49.5 7.6e-21 74.2 49.5 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|332797624|ref|YP_004459124.1| - 5.6e-16 58.4 45.6 9e-16 57.7 45.6 1.3 1 0 0 1 1 1 1 Amino acid permease MFS_1 PF07690.16 gi|332797625|ref|YP_004459125.1| - 1.1e-55 189.0 46.0 1.1e-55 189.0 46.0 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797625|ref|YP_004459125.1| - 1.8e-11 43.6 32.8 6.9e-10 38.4 9.5 2.8 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|332797625|ref|YP_004459125.1| - 0.034 12.5 13.0 0.019 13.4 6.3 2.3 2 0 0 2 2 2 0 Transmembrane secretion effector FAD_binding_4 PF01565.23 gi|332797626|ref|YP_004459126.1| - 1.7e-45 154.1 0.0 6.1e-45 152.4 0.0 1.9 2 0 0 2 2 2 1 FAD binding domain FAD-oxidase_C PF02913.19 gi|332797626|ref|YP_004459126.1| - 4.3e-45 154.3 0.0 5.9e-45 153.9 0.0 1.1 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain Thermopsin PF05317.11 gi|332797628|ref|YP_004459128.1| - 3.7e-74 249.5 7.9 3.7e-74 249.5 7.9 2.0 3 0 0 3 3 3 1 Thermopsin NucS PF01939.16 gi|332797629|ref|YP_004459129.1| - 1.6e-51 174.9 0.0 1.9e-51 174.6 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS Cas_Cas4 PF01930.17 gi|332797629|ref|YP_004459129.1| - 0.024 14.7 0.1 0.21 11.7 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function DUF83 MnmE_helical PF12631.7 gi|332797630|ref|YP_004459130.1| - 0.4 10.8 2.2 0.49 10.5 1.3 1.6 1 1 0 1 1 1 0 MnmE helical domain ABC_tran PF00005.27 gi|332797632|ref|YP_004459132.1| - 1.4e-28 100.1 0.0 2e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797632|ref|YP_004459132.1| - 2.6e-11 43.9 0.2 8.9e-05 22.4 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332797632|ref|YP_004459132.1| - 0.00041 19.9 1.1 0.11 11.9 0.1 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|332797632|ref|YP_004459132.1| - 0.0048 16.6 0.0 0.01 15.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332797632|ref|YP_004459132.1| - 0.021 15.3 1.1 0.022 15.3 0.1 1.4 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|332797632|ref|YP_004459132.1| - 0.038 13.8 0.1 0.078 12.8 0.1 1.4 1 1 0 1 1 1 0 MukB N-terminal Rad17 PF03215.15 gi|332797632|ref|YP_004459132.1| - 0.045 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_30 PF13604.6 gi|332797632|ref|YP_004459132.1| - 0.062 13.0 0.1 0.091 12.5 0.1 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|332797632|ref|YP_004459132.1| - 0.067 13.6 0.6 0.15 12.5 0.3 2.0 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF87 PF01935.17 gi|332797632|ref|YP_004459132.1| - 0.069 13.2 0.1 0.19 11.8 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_5 PF07728.14 gi|332797632|ref|YP_004459132.1| - 0.076 13.0 0.3 0.36 10.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_27 PF13514.6 gi|332797632|ref|YP_004459132.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF3562 PF12085.8 gi|332797632|ref|YP_004459132.1| - 0.15 11.7 0.0 0.28 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) Fer4 PF00037.27 gi|332797634|ref|YP_004459134.1| - 1.8e-14 52.8 13.3 1.7e-07 30.7 5.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332797634|ref|YP_004459134.1| - 4.1e-10 40.1 14.7 2.7e-08 34.3 8.5 1.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797634|ref|YP_004459134.1| - 4.3e-09 36.3 19.7 4.7e-07 29.8 8.5 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332797634|ref|YP_004459134.1| - 7.4e-09 35.6 6.0 1.1e-08 35.1 6.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|332797634|ref|YP_004459134.1| - 6.8e-08 32.5 6.3 9.9e-08 32.0 6.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332797634|ref|YP_004459134.1| - 9.2e-08 31.8 13.6 0.00025 21.0 5.7 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332797634|ref|YP_004459134.1| - 1.1e-05 25.2 9.6 0.0072 16.4 3.0 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain ETF_QO PF05187.13 gi|332797634|ref|YP_004459134.1| - 5.7e-05 23.2 0.7 5.8e-05 23.2 0.7 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|332797634|ref|YP_004459134.1| - 6.2e-05 23.4 10.4 0.036 14.6 0.4 2.3 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|332797634|ref|YP_004459134.1| - 6.4e-05 23.8 9.1 0.0087 17.0 3.1 2.3 1 1 1 2 2 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|332797634|ref|YP_004459134.1| - 8.3e-05 23.1 1.0 0.33 11.5 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332797634|ref|YP_004459134.1| - 0.00012 22.4 7.9 0.0057 17.1 8.8 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|332797634|ref|YP_004459134.1| - 0.00023 21.9 13.7 0.012 16.5 6.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|332797634|ref|YP_004459134.1| - 0.00046 20.5 8.8 0.045 14.3 3.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|332797634|ref|YP_004459134.1| - 0.022 15.5 11.4 0.35 11.6 0.2 2.7 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|332797634|ref|YP_004459134.1| - 0.023 14.9 10.4 0.026 14.7 2.9 2.1 1 1 0 2 2 2 0 4Fe-4S dicluster domain Tenui_PVC2 PF06656.11 gi|332797634|ref|YP_004459134.1| - 0.034 12.0 0.0 0.034 12.0 0.0 1.0 1 0 0 1 1 1 0 Tenuivirus PVC2 protein Fer4_22 PF17179.4 gi|332797634|ref|YP_004459134.1| - 3.2 8.7 8.5 16 6.4 2.8 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain CbiZ PF01955.18 gi|332797635|ref|YP_004459135.1| - 7.1e-18 65.4 0.0 1e-17 64.9 0.0 1.2 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase TrmB PF01978.19 gi|332797636|ref|YP_004459136.1| - 6e-14 51.7 0.0 8e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|332797636|ref|YP_004459136.1| - 1.3e-09 37.5 0.1 2.1e-09 36.8 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|332797636|ref|YP_004459136.1| - 1.9e-09 37.3 0.1 2.9e-09 36.7 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|332797636|ref|YP_004459136.1| - 7.6e-07 28.9 0.0 9.3e-07 28.7 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.7 gi|332797636|ref|YP_004459136.1| - 8.5e-07 28.8 0.0 1.2e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|332797636|ref|YP_004459136.1| - 9.5e-06 25.4 0.0 1.7e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|332797636|ref|YP_004459136.1| - 0.00048 19.9 0.0 0.0008 19.2 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|332797636|ref|YP_004459136.1| - 0.00078 19.9 0.0 0.0013 19.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|332797636|ref|YP_004459136.1| - 0.00087 19.4 0.2 0.002 18.3 0.1 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|332797636|ref|YP_004459136.1| - 0.00099 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Mga PF05043.13 gi|332797636|ref|YP_004459136.1| - 0.0016 19.0 0.1 0.0046 17.5 0.0 1.7 2 0 0 2 2 2 1 Mga helix-turn-helix domain DUF4423 PF14394.6 gi|332797636|ref|YP_004459136.1| - 0.0022 17.7 0.0 0.0026 17.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_20 PF12840.7 gi|332797636|ref|YP_004459136.1| - 0.0036 17.3 0.0 0.0056 16.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|332797636|ref|YP_004459136.1| - 0.0048 16.7 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Gp-FAR-1 PF05823.12 gi|332797636|ref|YP_004459136.1| - 0.0059 17.0 0.2 0.0088 16.4 0.2 1.3 1 0 0 1 1 1 1 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DUF2250 PF10007.9 gi|332797636|ref|YP_004459136.1| - 0.011 15.8 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_9 PF08221.11 gi|332797636|ref|YP_004459136.1| - 0.019 15.0 0.1 0.037 14.1 0.0 1.4 2 0 0 2 2 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_11 PF08279.12 gi|332797636|ref|YP_004459136.1| - 0.027 14.4 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain Dimerisation2 PF16864.5 gi|332797636|ref|YP_004459136.1| - 0.039 13.9 0.0 0.057 13.4 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_34 PF13601.6 gi|332797636|ref|YP_004459136.1| - 0.077 13.2 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|332797636|ref|YP_004459136.1| - 0.079 12.9 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.6 gi|332797636|ref|YP_004459136.1| - 0.11 12.4 0.3 0.29 11.1 0.3 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain zinc_ribbon_2 PF13240.6 gi|332797637|ref|YP_004459137.1| - 3.1e-13 49.0 9.4 7.6e-08 31.8 2.5 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|332797637|ref|YP_004459137.1| - 4e-11 42.7 8.9 1.5e-05 24.9 3.2 2.2 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|332797637|ref|YP_004459137.1| - 8.2e-09 34.6 11.9 1.1e-05 24.7 2.9 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|332797637|ref|YP_004459137.1| - 1.2e-05 26.0 6.0 0.042 14.6 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon family DUF35_N PF12172.8 gi|332797637|ref|YP_004459137.1| - 4.4e-05 23.3 7.9 0.019 14.8 1.0 2.2 2 0 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) OrfB_Zn_ribbon PF07282.11 gi|332797637|ref|YP_004459137.1| - 0.00052 19.9 5.0 0.25 11.3 0.5 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain zf-RanBP PF00641.18 gi|332797637|ref|YP_004459137.1| - 0.0024 17.1 7.2 0.082 12.2 0.8 2.7 2 1 0 2 2 2 2 Zn-finger in Ran binding protein and others DHHC PF01529.20 gi|332797637|ref|YP_004459137.1| - 0.0057 16.8 4.6 0.69 10.0 0.1 2.1 2 0 0 2 2 2 2 DHHC palmitoyltransferase UPF0547 PF10571.9 gi|332797637|ref|YP_004459137.1| - 0.0086 16.1 10.4 0.11 12.7 2.7 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Nudix_N_2 PF14803.6 gi|332797637|ref|YP_004459137.1| - 0.013 15.4 9.0 3.9 7.5 0.0 4.0 4 0 0 4 4 4 0 Nudix N-terminal zinc-ribbon_6 PF10005.9 gi|332797637|ref|YP_004459137.1| - 0.019 15.7 3.3 1.9 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain PHF5 PF03660.14 gi|332797637|ref|YP_004459137.1| - 0.019 15.2 0.5 1.3 9.3 0.0 2.1 2 0 0 2 2 2 0 PHF5-like protein Prok-RING_1 PF14446.6 gi|332797637|ref|YP_004459137.1| - 0.047 13.6 12.4 0.33 10.9 1.3 3.1 2 1 0 3 3 3 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.10 gi|332797637|ref|YP_004459137.1| - 0.047 13.8 14.0 4.1 7.6 0.7 4.2 2 2 2 4 4 4 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|332797637|ref|YP_004459137.1| - 0.057 13.4 7.2 1.8 8.6 1.8 2.4 2 0 0 2 2 2 0 zinc-ribbons YhfH PF14149.6 gi|332797637|ref|YP_004459137.1| - 0.2 11.7 9.4 4.5 7.3 0.2 4.0 4 0 0 4 4 4 0 YhfH-like protein CpXC PF14353.6 gi|332797637|ref|YP_004459137.1| - 0.23 11.5 9.3 3.5 7.7 2.0 3.5 1 1 1 2 2 2 0 CpXC protein A2L_zn_ribbon PF08792.10 gi|332797637|ref|YP_004459137.1| - 0.3 10.9 9.0 15 5.5 0.2 4.0 4 0 0 4 4 4 0 A2L zinc ribbon domain Zn_ribbon_17 PF17120.5 gi|332797637|ref|YP_004459137.1| - 0.3 10.7 5.5 2.5 7.8 0.4 2.8 3 0 0 3 3 3 0 Zinc-ribbon, C4HC2 type PhnA_Zn_Ribbon PF08274.12 gi|332797637|ref|YP_004459137.1| - 0.36 10.8 5.3 2.3 8.3 0.1 3.5 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HypA PF01155.19 gi|332797637|ref|YP_004459137.1| - 0.38 10.8 7.1 9.1 6.4 4.4 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C4_Topoisom PF01396.19 gi|332797637|ref|YP_004459137.1| - 0.46 10.3 10.9 6.4 6.6 0.3 4.0 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zf-ISL3 PF14690.6 gi|332797637|ref|YP_004459137.1| - 0.48 11.1 14.0 4.9 7.9 0.5 4.0 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.12 gi|332797637|ref|YP_004459137.1| - 1.1 9.1 13.5 3.1 7.6 0.7 4.0 4 0 0 4 4 4 0 HypF finger DUF983 PF06170.12 gi|332797637|ref|YP_004459137.1| - 1.2 9.6 8.5 39 4.7 0.0 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF983) zf-tcix PF14952.6 gi|332797637|ref|YP_004459137.1| - 2.1 8.1 13.1 0.62 9.7 3.3 3.0 3 1 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding PLATZ PF04640.14 gi|332797637|ref|YP_004459137.1| - 2.3 8.9 4.8 13 6.5 0.4 2.4 2 1 0 2 2 2 0 PLATZ transcription factor Sgf11 PF08209.11 gi|332797637|ref|YP_004459137.1| - 3.1 7.4 8.5 4.5 6.9 0.1 3.7 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-C3HC4_3 PF13920.6 gi|332797637|ref|YP_004459137.1| - 3.6 7.5 11.3 3.8 7.4 1.8 2.9 2 2 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.17 gi|332797637|ref|YP_004459137.1| - 3.8 7.5 10.8 4 7.5 0.1 3.8 3 1 1 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DUF4106 PF13388.6 gi|332797637|ref|YP_004459137.1| - 4 6.6 8.5 4.6 6.4 8.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4106) DNA_RNApol_7kD PF03604.13 gi|332797637|ref|YP_004459137.1| - 4.2 7.1 11.3 16 5.2 2.6 3.7 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit DUF2116 PF09889.9 gi|332797637|ref|YP_004459137.1| - 4.6 7.3 8.3 6.5 6.8 0.6 2.8 2 2 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Prok-RING_4 PF14447.6 gi|332797637|ref|YP_004459137.1| - 7.4 6.5 9.6 7.4 6.5 1.2 2.7 2 1 0 2 2 2 0 Prokaryotic RING finger family 4 zf-IS66 PF13005.7 gi|332797637|ref|YP_004459137.1| - 7.5 7.0 15.6 18 5.8 2.9 3.9 2 2 1 3 3 3 0 zinc-finger binding domain of transposase IS66 RecR PF02132.15 gi|332797637|ref|YP_004459137.1| - 7.8 6.2 8.4 17 5.1 0.1 3.0 2 1 0 2 2 2 0 RecR protein AIM24 PF01987.17 gi|332797638|ref|YP_004459138.1| - 8.7e-43 146.5 0.6 1e-42 146.2 0.6 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 Acetyltransf_1 PF00583.25 gi|332797639|ref|YP_004459139.1| - 2.2e-12 47.2 0.0 2.7e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|332797639|ref|YP_004459139.1| - 1.6e-08 34.5 0.0 2e-08 34.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|332797639|ref|YP_004459139.1| - 2.2e-08 34.4 0.1 3.2e-08 33.9 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|332797639|ref|YP_004459139.1| - 5e-07 29.6 0.0 6.8e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|332797639|ref|YP_004459139.1| - 0.00041 20.4 0.0 0.00071 19.7 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|332797639|ref|YP_004459139.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PaREP1 PF05942.11 gi|332797641|ref|YP_004459141.1| - 2.9e-20 72.3 0.0 4.5e-20 71.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF4143 PF13635.6 gi|332797642|ref|YP_004459142.1| - 1.4e-11 44.6 0.0 2.2e-11 44.0 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4143) Glyoxalase_2 PF12681.7 gi|332797642|ref|YP_004459142.1| - 0.077 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain ABC_tran PF00005.27 gi|332797643|ref|YP_004459143.1| - 8.2e-34 117.1 0.2 1.3e-33 116.4 0.2 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797643|ref|YP_004459143.1| - 7.4e-14 52.2 0.4 2.5e-09 37.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332797643|ref|YP_004459143.1| - 8.9e-06 25.6 1.7 0.017 14.9 0.0 2.6 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|332797643|ref|YP_004459143.1| - 3.1e-05 24.3 0.3 0.00014 22.1 0.1 2.0 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|332797643|ref|YP_004459143.1| - 6.3e-05 22.5 0.1 0.002 17.6 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|332797643|ref|YP_004459143.1| - 9.8e-05 22.8 0.0 0.00019 21.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|332797643|ref|YP_004459143.1| - 0.00027 21.1 0.0 0.00084 19.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332797643|ref|YP_004459143.1| - 0.00074 20.0 0.8 0.0027 18.1 0.8 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|332797643|ref|YP_004459143.1| - 0.00098 19.2 0.6 0.033 14.2 0.6 3.1 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|332797643|ref|YP_004459143.1| - 0.0034 17.4 0.0 0.0082 16.1 0.0 1.6 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|332797643|ref|YP_004459143.1| - 0.0034 17.0 0.2 0.017 14.7 0.1 2.1 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|332797643|ref|YP_004459143.1| - 0.0042 17.0 1.6 0.17 11.8 0.2 2.7 3 0 0 3 3 3 1 NTPase RsgA_GTPase PF03193.16 gi|332797643|ref|YP_004459143.1| - 0.0052 16.7 0.1 0.012 15.6 0.1 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|332797643|ref|YP_004459143.1| - 0.0054 16.4 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|332797643|ref|YP_004459143.1| - 0.0082 15.9 0.1 2.1 8.1 0.0 2.4 2 1 0 2 2 2 1 IstB-like ATP binding protein AAA_10 PF12846.7 gi|332797643|ref|YP_004459143.1| - 0.012 14.5 0.6 0.018 14.0 0.6 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_23 PF13476.6 gi|332797643|ref|YP_004459143.1| - 0.013 16.0 5.8 0.057 13.9 5.9 2.2 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|332797643|ref|YP_004459143.1| - 0.013 15.4 0.2 0.033 14.1 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|332797643|ref|YP_004459143.1| - 0.016 14.9 0.2 0.027 14.2 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|332797643|ref|YP_004459143.1| - 0.017 15.7 0.9 0.059 13.9 0.9 2.0 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|332797643|ref|YP_004459143.1| - 0.018 14.2 0.0 0.042 13.0 0.0 1.6 1 0 0 1 1 1 0 NB-ARC domain AAA_27 PF13514.6 gi|332797643|ref|YP_004459143.1| - 0.018 14.6 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATP_bind_1 PF03029.17 gi|332797643|ref|YP_004459143.1| - 0.02 14.7 0.2 1.2 8.8 0.0 2.9 4 0 0 4 4 3 0 Conserved hypothetical ATP binding protein AAA_24 PF13479.6 gi|332797643|ref|YP_004459143.1| - 0.023 14.4 0.5 0.13 12.0 0.1 2.2 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|332797643|ref|YP_004459143.1| - 0.029 14.6 0.0 0.26 11.6 0.0 2.4 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit AAA_7 PF12775.7 gi|332797643|ref|YP_004459143.1| - 0.04 13.4 0.1 0.097 12.2 0.1 1.6 1 0 0 1 1 1 0 P-loop containing dynein motor region G-alpha PF00503.20 gi|332797643|ref|YP_004459143.1| - 0.059 12.5 0.0 0.096 11.8 0.0 1.3 1 1 0 1 1 1 0 G-protein alpha subunit DUF87 PF01935.17 gi|332797643|ref|YP_004459143.1| - 0.063 13.4 0.4 0.19 11.8 0.1 1.9 2 0 0 2 2 2 0 Helicase HerA, central domain RNA_helicase PF00910.22 gi|332797643|ref|YP_004459143.1| - 0.12 12.8 0.2 0.63 10.5 0.0 2.2 2 0 0 2 2 2 0 RNA helicase Roc PF08477.13 gi|332797643|ref|YP_004459143.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.7 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase cobW PF02492.19 gi|332797643|ref|YP_004459143.1| - 0.14 11.7 0.1 0.3 10.7 0.1 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|332797643|ref|YP_004459143.1| - 0.15 12.3 0.3 0.47 10.7 0.1 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|332797643|ref|YP_004459143.1| - 0.16 11.3 0.0 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI BCA_ABC_TP_C PF12399.8 gi|332797643|ref|YP_004459143.1| - 0.18 11.8 0.9 0.81 9.7 0.1 2.2 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter AAA_5 PF07728.14 gi|332797643|ref|YP_004459143.1| - 0.2 11.6 0.7 0.94 9.5 0.1 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_19 PF13245.6 gi|332797643|ref|YP_004459143.1| - 0.26 11.6 0.8 0.49 10.7 0.7 1.9 1 1 0 1 1 1 0 AAA domain ABC2_membrane PF01061.24 gi|332797644|ref|YP_004459144.1| - 4.5e-09 36.0 23.3 4.5e-09 36.0 23.3 1.4 1 1 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|332797644|ref|YP_004459144.1| - 1.9e-05 23.9 25.0 1.9e-05 23.9 25.0 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein PGG PF13962.6 gi|332797644|ref|YP_004459144.1| - 2.4 8.0 8.5 0.1 12.4 1.6 2.2 2 1 1 3 3 3 0 Domain of unknown function Terminase_5 PF06056.12 gi|332797645|ref|YP_004459145.1| - 0.021 14.7 0.0 0.38 10.7 0.0 2.4 2 0 0 2 2 2 0 Putative ATPase subunit of terminase (gpP-like) MFS_1 PF07690.16 gi|332797647|ref|YP_004459147.1| - 3.1e-21 75.7 35.1 5.1e-16 58.5 11.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|332797647|ref|YP_004459147.1| - 1.4e-06 27.4 11.5 0.0014 17.6 3.2 2.6 1 1 1 2 2 2 2 MFS_1 like family VAPB_antitox PF02697.14 gi|332797648|ref|YP_004459148.1| - 0.0008 20.1 4.1 0.0039 17.9 4.0 2.1 1 1 0 1 1 1 1 Putative antitoxin DUF2281 PF10047.9 gi|332797648|ref|YP_004459148.1| - 0.0029 18.2 0.9 0.65 10.7 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2281) DUF2540 PF10802.8 gi|332797648|ref|YP_004459148.1| - 0.0079 16.2 1.9 0.012 15.6 1.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2540) DUF3924 PF13062.6 gi|332797648|ref|YP_004459148.1| - 0.0082 16.1 0.6 0.014 15.3 0.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3924) Post_transc_reg PF13797.6 gi|332797648|ref|YP_004459148.1| - 0.053 13.4 1.0 0.096 12.6 0.6 1.7 1 1 0 1 1 1 0 Post-transcriptional regulator PIN PF01850.21 gi|332797649|ref|YP_004459149.1| - 3e-12 47.1 0.6 3.5e-12 46.9 0.6 1.0 1 0 0 1 1 1 1 PIN domain TMEM100 PF16311.5 gi|332797650|ref|YP_004459150.1| - 4.3 6.9 8.1 0.61 9.7 3.8 1.8 2 0 0 2 2 2 0 Transmembrane protein 100 Fer4_10 PF13237.6 gi|332797651|ref|YP_004459151.1| - 1.4e-06 28.3 6.5 1.4e-06 28.3 6.5 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|332797651|ref|YP_004459151.1| - 4.8e-05 23.2 9.3 0.012 15.6 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|332797651|ref|YP_004459151.1| - 6.2e-05 23.5 16.4 0.00036 21.0 9.7 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332797651|ref|YP_004459151.1| - 0.00013 21.6 0.6 0.00013 21.6 0.6 2.9 2 1 0 2 2 2 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332797651|ref|YP_004459151.1| - 0.00025 21.0 8.4 0.17 12.1 0.2 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|332797651|ref|YP_004459151.1| - 0.00052 20.1 5.8 0.00052 20.1 5.8 1.7 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|332797651|ref|YP_004459151.1| - 0.013 15.6 1.8 0.031 14.4 1.8 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|332797651|ref|YP_004459151.1| - 0.019 15.2 2.5 0.04 14.1 2.5 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332797651|ref|YP_004459151.1| - 0.21 12.0 7.9 3.2 8.3 0.5 2.9 4 0 0 4 4 4 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|332797651|ref|YP_004459151.1| - 0.24 11.2 6.3 0.081 12.7 1.6 2.2 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_17 PF13534.6 gi|332797651|ref|YP_004459151.1| - 0.25 11.9 8.2 42 4.8 8.5 2.5 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|332797651|ref|YP_004459151.1| - 0.27 11.8 9.1 2.8 8.7 0.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|332797651|ref|YP_004459151.1| - 0.28 12.2 11.8 0.87 10.7 0.6 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|332797651|ref|YP_004459151.1| - 1.1 10.2 7.4 7.2 7.6 0.3 2.4 1 1 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|332797651|ref|YP_004459151.1| - 8.2 6.6 15.3 0.085 13.0 7.2 1.9 2 1 1 3 3 2 0 4Fe-4S dicluster domain MFS_1 PF07690.16 gi|332797652|ref|YP_004459152.1| - 1.6e-25 89.8 58.2 5.8e-16 58.4 36.6 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332797652|ref|YP_004459152.1| - 5.4e-05 21.8 13.1 0.00053 18.5 4.1 2.1 2 0 0 2 2 2 2 Transmembrane secretion effector ABC2_membrane_2 PF12679.7 gi|332797653|ref|YP_004459153.1| - 2.1e-08 33.8 25.7 1.5e-07 31.0 25.7 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein CarboxypepD_reg PF13620.6 gi|332797653|ref|YP_004459153.1| - 0.0002 21.6 0.4 0.00051 20.3 0.4 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain Chs7 PF12271.8 gi|332797653|ref|YP_004459153.1| - 0.023 14.1 13.5 0.048 13.0 13.5 1.5 1 0 0 1 1 1 0 Chitin synthase export chaperone ABC_tran PF00005.27 gi|332797654|ref|YP_004459154.1| - 2e-23 83.4 0.0 3.5e-23 82.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797654|ref|YP_004459154.1| - 3.3e-10 40.3 0.7 2.6e-06 27.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|332797654|ref|YP_004459154.1| - 0.019 15.5 2.9 0.026 15.0 2.8 1.6 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|332797654|ref|YP_004459154.1| - 0.071 12.7 1.2 0.18 11.4 0.5 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|332797654|ref|YP_004459154.1| - 0.11 12.2 0.2 0.2 11.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|332797654|ref|YP_004459154.1| - 0.14 11.8 0.2 0.3 10.8 0.1 1.5 2 0 0 2 2 2 0 AAA domain SLH PF00395.20 gi|332797655|ref|YP_004459155.1| - 0.083 12.9 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 S-layer homology domain YbjQ_1 PF01906.17 gi|332797657|ref|YP_004459157.1| - 1.1e-18 67.8 0.8 3.1e-17 63.1 0.8 2.0 1 1 0 1 1 1 1 Putative heavy-metal-binding SeleniumBinding PF11524.8 gi|332797657|ref|YP_004459157.1| - 1.6e-05 25.3 2.3 0.018 15.5 2.3 2.1 1 1 0 1 1 1 1 Selenium binding protein IF-2B PF01008.17 gi|332797658|ref|YP_004459158.1| - 1.2e-75 254.4 0.1 1.4e-75 254.1 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF4649 PF15507.6 gi|332797659|ref|YP_004459159.1| - 0.012 15.6 0.4 0.062 13.3 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4649) DUF3800 PF12686.7 gi|332797661|ref|YP_004459161.1| - 0.022 15.4 3.8 0.038 14.6 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3800) NTP_transf_2 PF01909.23 gi|332797662|ref|YP_004459162.1| - 8.6e-16 58.0 0.2 1.2e-15 57.6 0.2 1.2 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797662|ref|YP_004459162.1| - 6.7e-13 48.5 0.0 1.1e-12 47.9 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|332797662|ref|YP_004459162.1| - 0.016 15.4 0.0 0.026 14.7 0.0 1.4 1 1 0 1 1 1 0 DNA polymerase beta palm Baculo_p24 PF05073.12 gi|332797662|ref|YP_004459162.1| - 0.14 11.9 0.7 1.2 8.9 0.0 2.0 1 1 0 2 2 2 0 Baculovirus P24 capsid protein HEPN PF05168.14 gi|332797663|ref|YP_004459163.1| - 2.3e-19 69.7 0.1 2.8e-19 69.4 0.1 1.1 1 0 0 1 1 1 1 HEPN domain AvrM_N PF18247.1 gi|332797664|ref|YP_004459164.1| - 0.0073 16.2 0.1 0.031 14.2 0.0 2.1 2 0 0 2 2 2 1 Flax-rust effector AvrM N-terminal domain Replicase PF03090.17 gi|332797664|ref|YP_004459164.1| - 0.1 12.5 0.0 9.9 6.0 0.0 2.3 2 0 0 2 2 2 0 Replicase family PaREP1 PF05942.11 gi|332797665|ref|YP_004459165.1| - 5.6e-23 81.1 4.4 8.2e-23 80.5 4.4 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family HEPN PF05168.14 gi|332797665|ref|YP_004459165.1| - 0.00087 19.4 5.1 0.0017 18.4 5.1 1.5 1 1 0 1 1 1 1 HEPN domain DUF5618 PF18498.1 gi|332797665|ref|YP_004459165.1| - 0.005 17.0 0.9 0.0079 16.4 0.9 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5618) Peptidase_C65 PF10275.9 gi|332797665|ref|YP_004459165.1| - 0.067 12.6 0.9 0.096 12.1 0.7 1.4 1 1 0 1 1 1 0 Peptidase C65 Otubain GED PF02212.18 gi|332797665|ref|YP_004459165.1| - 0.26 11.4 0.2 0.26 11.4 0.2 2.5 3 0 0 3 3 3 0 Dynamin GTPase effector domain PIN PF01850.21 gi|332797666|ref|YP_004459166.1| - 1.6e-05 25.4 1.6 1.8e-05 25.2 1.6 1.1 1 0 0 1 1 1 1 PIN domain MAAL_N PF05034.13 gi|332797666|ref|YP_004459166.1| - 0.017 14.8 0.3 0.021 14.5 0.3 1.3 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase N-terminus Syntaxin_2 PF14523.6 gi|332797666|ref|YP_004459166.1| - 0.069 13.5 0.3 0.13 12.7 0.3 1.4 1 0 0 1 1 1 0 Syntaxin-like protein Cadherin_2 PF08266.12 gi|332797666|ref|YP_004459166.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Cadherin-like DUF3333 PF11812.8 gi|332797667|ref|YP_004459167.1| - 0.011 16.0 0.1 0.012 15.8 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) HEPN PF05168.14 gi|332797668|ref|YP_004459168.1| - 9.3e-18 64.5 0.0 1.1e-17 64.3 0.0 1.0 1 0 0 1 1 1 1 HEPN domain Peripla_BP_2 PF01497.18 gi|332797669|ref|YP_004459169.1| - 1.2e-15 57.7 0.0 1.7e-15 57.2 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|332797670|ref|YP_004459170.1| - 2.5e-63 213.9 34.2 3.1e-63 213.6 34.2 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|332797670|ref|YP_004459170.1| - 8.6e-05 22.2 23.7 0.00014 21.5 23.7 1.4 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|332797671|ref|YP_004459171.1| - 8.8e-21 74.9 0.0 2.3e-20 73.5 0.0 1.7 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|332797671|ref|YP_004459171.1| - 2.3e-16 60.5 0.4 1.2e-07 31.8 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|332797671|ref|YP_004459171.1| - 6.8e-10 38.8 4.8 2.3e-05 24.0 0.6 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|332797671|ref|YP_004459171.1| - 8.9e-06 26.3 4.8 2e-05 25.2 4.7 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|332797671|ref|YP_004459171.1| - 4.8e-05 23.0 0.1 0.0001 22.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|332797671|ref|YP_004459171.1| - 5.8e-05 22.0 1.0 0.0022 16.7 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|332797671|ref|YP_004459171.1| - 0.00039 20.3 1.0 0.0019 18.0 0.5 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|332797671|ref|YP_004459171.1| - 0.001 19.5 0.2 0.0023 18.3 0.2 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|332797671|ref|YP_004459171.1| - 0.001 19.0 2.4 0.002 18.1 2.4 1.7 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|332797671|ref|YP_004459171.1| - 0.0016 18.2 0.0 0.004 16.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain cobW PF02492.19 gi|332797671|ref|YP_004459171.1| - 0.0042 16.7 0.2 0.011 15.4 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain NACHT PF05729.12 gi|332797671|ref|YP_004459171.1| - 0.006 16.5 0.1 0.0086 16.0 0.1 1.5 1 1 0 1 1 1 1 NACHT domain T2SSE PF00437.20 gi|332797671|ref|YP_004459171.1| - 0.0085 15.2 0.7 0.022 13.8 0.5 1.7 1 1 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|332797671|ref|YP_004459171.1| - 0.014 15.3 0.6 0.027 14.4 0.1 1.6 2 0 0 2 2 2 0 RsgA GTPase Adeno_IVa2 PF02456.15 gi|332797671|ref|YP_004459171.1| - 0.017 14.0 0.9 0.02 13.7 0.1 1.5 2 0 0 2 2 2 0 Adenovirus IVa2 protein IstB_IS21 PF01695.17 gi|332797671|ref|YP_004459171.1| - 0.021 14.6 0.2 3.8 7.2 0.0 2.3 1 1 0 2 2 2 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|332797671|ref|YP_004459171.1| - 0.021 15.2 0.1 0.025 14.9 0.1 1.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|332797671|ref|YP_004459171.1| - 0.022 15.0 0.1 0.034 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|332797671|ref|YP_004459171.1| - 0.026 14.9 1.0 0.059 13.7 1.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|332797671|ref|YP_004459171.1| - 0.028 14.0 0.1 0.053 13.1 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|332797671|ref|YP_004459171.1| - 0.028 14.5 0.6 0.066 13.3 0.6 1.9 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|332797671|ref|YP_004459171.1| - 0.036 14.0 2.7 0.46 10.4 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_5 PF07728.14 gi|332797671|ref|YP_004459171.1| - 0.061 13.3 0.1 0.15 12.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|332797671|ref|YP_004459171.1| - 0.066 13.4 0.0 0.23 11.6 0.0 2.1 1 1 0 1 1 1 0 AAA domain 7TM_GPCR_Sra PF02117.16 gi|332797671|ref|YP_004459171.1| - 0.084 11.7 0.1 0.12 11.2 0.1 1.1 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Sra DUF3584 PF12128.8 gi|332797671|ref|YP_004459171.1| - 0.1 10.1 0.3 0.14 9.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Abhydrolase_5 PF12695.7 gi|332797671|ref|YP_004459171.1| - 0.13 12.0 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Alpha/beta hydrolase family Mg_chelatase PF01078.21 gi|332797671|ref|YP_004459171.1| - 0.13 11.6 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_ATPase PF09818.9 gi|332797671|ref|YP_004459171.1| - 0.17 10.7 1.6 0.44 9.3 0.6 2.0 1 1 1 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|332797671|ref|YP_004459171.1| - 0.19 12.0 0.0 2.8 8.2 0.0 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.6 gi|332797671|ref|YP_004459171.1| - 0.29 11.7 1.4 1.7 9.2 0.3 2.2 1 1 1 2 2 2 0 AAA domain TP_methylase PF00590.20 gi|332797672|ref|YP_004459172.1| - 4.1e-47 160.9 1.2 4.4e-47 160.8 0.3 1.5 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Exog_C PF18026.1 gi|332797672|ref|YP_004459172.1| - 0.03 14.4 1.1 0.18 11.8 0.0 2.6 3 0 0 3 3 3 0 Endo/exonuclease (EXOG) C-terminal domain Arc_PepC PF06819.11 gi|332797672|ref|YP_004459172.1| - 0.6 10.2 8.3 0.31 11.2 0.3 3.1 3 0 0 3 3 3 0 Archaeal Peptidase A24 C-terminal Domain TP_methylase PF00590.20 gi|332797673|ref|YP_004459173.1| - 7.8e-42 143.6 0.0 8.9e-42 143.4 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CRS1_YhbY PF01985.21 gi|332797673|ref|YP_004459173.1| - 0.059 13.5 0.2 0.15 12.3 0.2 1.6 1 0 0 1 1 1 0 CRS1 / YhbY (CRM) domain Methyltransf_31 PF13847.6 gi|332797674|ref|YP_004459174.1| - 1.4e-10 41.1 0.0 2.2e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|332797674|ref|YP_004459174.1| - 5.2e-10 39.4 0.1 9.1e-10 38.6 0.1 1.5 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|332797674|ref|YP_004459174.1| - 8.3e-08 32.1 0.0 1.3e-07 31.5 0.0 1.3 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|332797674|ref|YP_004459174.1| - 7.3e-07 29.8 0.0 1.1e-06 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|332797674|ref|YP_004459174.1| - 2.3e-06 28.6 0.0 3.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|332797674|ref|YP_004459174.1| - 2.8e-06 26.7 0.2 3.6e-06 26.3 0.2 1.1 1 0 0 1 1 1 1 O-methyltransferase MTS PF05175.14 gi|332797674|ref|YP_004459174.1| - 6.1e-06 25.9 0.0 9.8e-06 25.2 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|332797674|ref|YP_004459174.1| - 6.2e-06 25.7 0.2 7.3e-06 25.5 0.2 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|332797674|ref|YP_004459174.1| - 1.6e-05 24.5 0.6 2.1e-05 24.1 0.6 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DOT1 PF08123.13 gi|332797674|ref|YP_004459174.1| - 2.4e-05 24.0 0.0 3.3e-05 23.5 0.0 1.4 1 1 0 1 1 1 1 Histone methylation protein DOT1 GidB PF02527.15 gi|332797674|ref|YP_004459174.1| - 4.1e-05 23.0 0.2 5.3e-05 22.6 0.2 1.2 1 0 0 1 1 1 1 rRNA small subunit methyltransferase G Met_10 PF02475.16 gi|332797674|ref|YP_004459174.1| - 6e-05 22.9 0.1 7.8e-05 22.5 0.1 1.3 1 1 0 1 1 1 1 Met-10+ like-protein Methyltransf_4 PF02390.17 gi|332797674|ref|YP_004459174.1| - 6.2e-05 22.5 0.1 0.00031 20.2 0.0 2.1 3 0 0 3 3 3 1 Putative methyltransferase Methyltransf_18 PF12847.7 gi|332797674|ref|YP_004459174.1| - 0.00016 21.7 0.3 0.00042 20.3 0.2 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|332797674|ref|YP_004459174.1| - 0.00017 21.2 0.0 0.00034 20.2 0.0 1.4 1 1 0 1 1 1 1 RNA cap guanine-N2 methyltransferase GCD14 PF08704.10 gi|332797674|ref|YP_004459174.1| - 0.00018 21.3 0.0 0.00023 20.9 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|332797674|ref|YP_004459174.1| - 0.00022 20.6 0.0 0.00027 20.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.20 gi|332797674|ref|YP_004459174.1| - 0.0003 20.0 0.0 0.00048 19.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.12 gi|332797674|ref|YP_004459174.1| - 0.00038 21.0 0.0 0.00067 20.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_5 PF01795.19 gi|332797674|ref|YP_004459174.1| - 0.0022 17.6 0.1 0.024 14.1 0.0 2.0 1 1 1 2 2 2 1 MraW methylase family Methyltransf_12 PF08242.12 gi|332797674|ref|YP_004459174.1| - 0.0024 18.6 0.0 0.0035 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Fibrillarin PF01269.17 gi|332797674|ref|YP_004459174.1| - 0.0033 16.6 0.1 0.0042 16.2 0.1 1.2 1 0 0 1 1 1 1 Fibrillarin FtsJ PF01728.19 gi|332797674|ref|YP_004459174.1| - 0.0064 16.6 0.0 0.017 15.3 0.0 1.5 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_23 PF13489.6 gi|332797674|ref|YP_004459174.1| - 0.011 15.6 0.0 0.012 15.4 0.0 1.3 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|332797674|ref|YP_004459174.1| - 0.021 14.5 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Lysine methyltransferase PRMT5 PF05185.16 gi|332797674|ref|YP_004459174.1| - 0.023 14.5 0.1 0.055 13.3 0.0 1.5 1 1 0 1 1 1 0 PRMT5 arginine-N-methyltransferase Methyltr_RsmB-F PF01189.17 gi|332797674|ref|YP_004459174.1| - 0.024 14.3 0.0 0.065 12.9 0.0 1.7 2 1 1 3 3 3 0 16S rRNA methyltransferase RsmB/F UPF0020 PF01170.18 gi|332797674|ref|YP_004459174.1| - 0.03 14.0 0.1 0.46 10.1 0.1 2.1 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 DNA_methylase PF00145.17 gi|332797674|ref|YP_004459174.1| - 0.074 12.4 0.0 0.1 11.9 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_32 PF13679.6 gi|332797674|ref|YP_004459174.1| - 0.19 11.7 0.0 0.21 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CbiD PF01888.17 gi|332797675|ref|YP_004459175.1| - 5.5e-76 255.2 5.2 5.5e-76 255.2 5.2 1.7 2 0 0 2 2 2 1 CbiD RnfC_N PF13375.6 gi|332797675|ref|YP_004459175.1| - 0.0054 16.7 0.2 0.018 15.0 0.2 1.8 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain TP_methylase PF00590.20 gi|332797676|ref|YP_004459176.1| - 1.2e-38 133.2 0.5 1.4e-38 132.9 0.5 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|332797677|ref|YP_004459177.1| - 5.1e-50 169.9 0.7 7.3e-50 169.4 0.7 1.2 1 0 0 1 1 1 1 Precorrin-8X methylmutase CbiX PF01903.17 gi|332797677|ref|YP_004459177.1| - 3.9e-20 72.2 0.0 6.5e-19 68.2 0.0 2.7 3 0 0 3 3 3 1 CbiX CbiK PF06180.11 gi|332797677|ref|YP_004459177.1| - 0.027 13.8 0.0 0.04 13.2 0.0 1.2 1 0 0 1 1 1 0 Cobalt chelatase (CbiK) Pyr_redox_2 PF07992.14 gi|332797677|ref|YP_004459177.1| - 0.057 12.7 0.1 0.27 10.4 0.1 1.9 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Med13_N PF11597.8 gi|332797678|ref|YP_004459178.1| - 0.14 11.5 0.0 0.15 11.4 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit 13 N-terminal TP_methylase PF00590.20 gi|332797679|ref|YP_004459179.1| - 2.7e-31 109.2 0.0 3e-31 109.0 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|332797680|ref|YP_004459180.1| - 8.1e-30 102.7 0.0 2.4e-29 101.1 0.0 1.8 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|332797680|ref|YP_004459180.1| - 1.8e-16 60.7 0.4 4.7e-16 59.4 0.4 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus zinc_ribbon_2 PF13240.6 gi|332797681|ref|YP_004459181.1| - 1.9e-07 30.6 6.0 3.3e-07 29.8 6.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|332797681|ref|YP_004459181.1| - 2.2e-05 23.7 2.7 3.7e-05 23.0 2.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|332797681|ref|YP_004459181.1| - 7.9e-05 22.6 1.5 0.00015 21.7 1.5 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|332797681|ref|YP_004459181.1| - 0.014 14.7 0.9 0.014 14.7 0.9 1.7 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-tcix PF14952.6 gi|332797681|ref|YP_004459181.1| - 0.11 12.2 0.6 0.18 11.4 0.6 1.4 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding UPF0547 PF10571.9 gi|332797681|ref|YP_004459181.1| - 0.12 12.5 6.5 0.47 10.6 6.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zn-ribbon_14 PF16503.5 gi|332797681|ref|YP_004459181.1| - 0.18 11.4 2.2 6.4 6.4 0.2 2.5 2 0 0 2 2 2 0 Zinc-ribbon DUF5381 PF17353.2 gi|332797681|ref|YP_004459181.1| - 0.19 11.5 1.0 3.6 7.3 0.2 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5381) zinc_ribbon_15 PF17032.5 gi|332797681|ref|YP_004459181.1| - 0.3 11.9 2.8 0.66 10.8 2.8 1.6 1 0 0 1 1 1 0 zinc-ribbon family DUF2116 PF09889.9 gi|332797681|ref|YP_004459181.1| - 0.66 10.0 3.7 16 5.6 0.5 2.4 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Molybdopterin PF00384.22 gi|332797682|ref|YP_004459182.1| - 5.3e-73 246.4 0.0 6.4e-73 246.2 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|332797682|ref|YP_004459182.1| - 5.7e-22 77.8 0.1 1.4e-21 76.6 0.0 1.7 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|332797682|ref|YP_004459182.1| - 2e-17 62.9 0.2 3.5e-17 62.1 0.2 1.4 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain NTP_transf_2 PF01909.23 gi|332797683|ref|YP_004459183.1| - 3.3e-14 53.0 0.3 5e-14 52.4 0.3 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797683|ref|YP_004459183.1| - 1.5e-09 37.8 0.4 2.4e-09 37.2 0.2 1.5 1 1 1 2 2 2 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|332797683|ref|YP_004459183.1| - 0.00018 21.7 0.0 0.00022 21.4 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase beta palm Anticodon_1 PF08264.13 gi|332797683|ref|YP_004459183.1| - 0.0062 16.5 4.3 0.017 15.1 1.5 2.0 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA HTH_48 PF17906.1 gi|332797683|ref|YP_004459183.1| - 0.032 14.4 1.3 0.15 12.2 1.1 2.1 1 1 0 1 1 1 0 HTH domain in Mos1 transposase HEPN PF05168.14 gi|332797684|ref|YP_004459184.1| - 2.7e-25 88.8 0.0 3.1e-25 88.6 0.0 1.0 1 0 0 1 1 1 1 HEPN domain CxxCxxCC PF03692.15 gi|332797685|ref|YP_004459185.1| - 2.3e-07 31.4 2.4 4e-07 30.6 2.4 1.4 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain Sigma70_r3 PF04539.16 gi|332797685|ref|YP_004459185.1| - 0.15 12.1 0.0 0.4 10.8 0.0 1.6 2 0 0 2 2 2 0 Sigma-70 region 3 FlbD PF06289.11 gi|332797688|ref|YP_004459188.1| - 0.63 9.7 5.4 2.4 7.8 1.1 2.8 3 0 0 3 3 3 0 Flagellar and Swarming motility proteins zinc_ribbon_2 PF13240.6 gi|332797689|ref|YP_004459189.1| - 3.3e-05 23.5 4.5 4.7e-05 22.9 4.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|332797689|ref|YP_004459189.1| - 0.00013 21.9 1.3 0.00019 21.4 1.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.18 gi|332797689|ref|YP_004459189.1| - 0.00057 19.2 2.3 0.00085 18.6 2.3 1.2 1 0 0 1 1 1 1 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.6 gi|332797689|ref|YP_004459189.1| - 0.0036 16.7 3.2 0.0055 16.1 3.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|332797689|ref|YP_004459189.1| - 0.0037 18.0 0.0 0.0049 17.6 0.0 1.3 1 0 0 1 1 1 1 zinc-ribbon family zf_C2H2_13 PF18508.1 gi|332797689|ref|YP_004459189.1| - 0.1 12.2 0.3 16 5.2 0.0 2.3 2 0 0 2 2 2 0 Zinc finger domain ADK_lid PF05191.14 gi|332797689|ref|YP_004459189.1| - 0.17 11.9 3.4 3.2 7.8 0.3 2.6 1 1 1 2 2 2 0 Adenylate kinase, active site lid zf-piccolo PF05715.13 gi|332797689|ref|YP_004459189.1| - 0.23 11.6 3.9 0.63 10.2 3.9 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger Nudix_N_2 PF14803.6 gi|332797689|ref|YP_004459189.1| - 0.58 10.1 3.3 1.9 8.5 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF35_N PF12172.8 gi|332797689|ref|YP_004459189.1| - 1.1 9.2 4.1 2 8.4 4.1 1.4 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) MFS_1 PF07690.16 gi|332797690|ref|YP_004459190.1| - 6.7e-21 74.6 26.5 4.5e-14 52.2 19.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|332797690|ref|YP_004459190.1| - 1.6e-06 27.2 9.9 1.6e-06 27.2 9.9 1.7 1 1 1 2 2 2 1 Sugar (and other) transporter MFS_1_like PF12832.7 gi|332797690|ref|YP_004459190.1| - 0.00046 19.2 12.2 0.058 12.2 0.5 2.1 2 0 0 2 2 2 2 MFS_1 like family DUF3522 PF12036.8 gi|332797690|ref|YP_004459190.1| - 0.65 10.2 3.8 1.2 9.4 0.8 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) U62_UL91 PF17442.2 gi|332797691|ref|YP_004459191.1| - 0.096 12.7 0.4 0.18 11.8 0.3 1.6 1 1 0 1 1 1 0 Functional domain of U62 and UL91 proteins ABC_tran PF00005.27 gi|332797692|ref|YP_004459192.1| - 3.1e-27 95.7 0.1 1.9e-26 93.2 0.0 1.9 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|332797692|ref|YP_004459192.1| - 9.9e-14 51.8 0.2 6.2e-06 26.2 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|332797692|ref|YP_004459192.1| - 0.001 18.9 5.8 0.016 15.0 5.9 2.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|332797692|ref|YP_004459192.1| - 0.0012 19.1 0.0 0.0026 18.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|332797692|ref|YP_004459192.1| - 0.03 14.0 0.3 0.052 13.3 0.3 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|332797692|ref|YP_004459192.1| - 0.032 14.1 0.0 0.054 13.4 0.0 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|332797692|ref|YP_004459192.1| - 0.037 13.8 0.6 0.078 12.7 0.6 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|332797692|ref|YP_004459192.1| - 0.053 13.2 0.3 5.5 6.7 0.0 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|332797692|ref|YP_004459192.1| - 0.058 13.0 0.1 0.27 10.8 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain T2SSE PF00437.20 gi|332797692|ref|YP_004459192.1| - 0.075 12.1 0.3 0.23 10.5 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA PF00004.29 gi|332797692|ref|YP_004459192.1| - 0.095 13.1 0.4 0.41 11.1 0.0 2.2 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|332797692|ref|YP_004459192.1| - 0.16 12.4 10.8 1.1 9.8 10.8 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|332797692|ref|YP_004459192.1| - 0.24 10.8 4.1 2.9 7.3 1.3 2.6 1 1 2 3 3 3 0 RecF/RecN/SMC N terminal domain KH_8 PF17903.1 gi|332797694|ref|YP_004459194.1| - 0.059 13.5 4.2 0.12 12.5 4.2 1.4 1 0 0 1 1 1 0 Krr1 KH1 domain Gram_pos_anchor PF00746.21 gi|332797694|ref|YP_004459194.1| - 0.32 11.0 0.1 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 LPXTG cell wall anchor motif HSP20 PF00011.21 gi|332797695|ref|YP_004459195.1| - 1.8e-12 47.3 0.1 2.2e-12 47.0 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|332797695|ref|YP_004459195.1| - 1.1e-11 44.1 0.0 1.7e-11 43.5 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA Frataxin_Cyay PF01491.16 gi|332797695|ref|YP_004459195.1| - 0.054 13.6 0.0 3.3 7.8 0.0 2.4 1 1 1 2 2 2 0 Frataxin-like domain DUF4403 PF14356.6 gi|332797695|ref|YP_004459195.1| - 0.057 12.1 0.0 0.46 9.1 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4403) ABC1 PF03109.16 gi|332797696|ref|YP_004459196.1| - 6.2e-24 84.4 0.2 2.2e-23 82.7 0.2 2.0 1 1 0 1 1 1 1 ABC1 family RIO1 PF01163.22 gi|332797696|ref|YP_004459196.1| - 2.1e-07 30.7 0.7 5.2e-07 29.4 0.2 2.0 2 1 0 2 2 2 1 RIO1 family APH PF01636.23 gi|332797696|ref|YP_004459196.1| - 0.0013 18.7 0.0 0.043 13.7 0.0 2.6 3 0 0 3 3 3 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|332797696|ref|YP_004459196.1| - 0.0081 15.5 1.7 0.0085 15.5 0.0 1.8 3 0 0 3 3 3 1 Protein kinase domain HTH_10 PF04967.12 gi|332797697|ref|YP_004459197.1| - 0.012 15.4 0.1 0.028 14.2 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain NUP214 PF16755.5 gi|332797697|ref|YP_004459197.1| - 0.019 14.2 1.3 0.019 14.2 1.3 1.0 1 0 0 1 1 1 0 Nucleoporin or Nuclear pore complex subunit NUP214=Nup159 IL2 PF00715.17 gi|332797697|ref|YP_004459197.1| - 0.02 14.8 0.6 0.021 14.8 0.6 1.2 1 0 0 1 1 1 0 Interleukin 2 TrmB PF01978.19 gi|332797697|ref|YP_004459197.1| - 0.021 14.7 0.1 5.7 6.9 0.0 2.1 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB MerR_1 PF13411.6 gi|332797697|ref|YP_004459197.1| - 0.039 14.0 0.1 0.059 13.5 0.1 1.3 1 0 0 1 1 1 0 MerR HTH family regulatory protein HTH_17 PF12728.7 gi|332797697|ref|YP_004459197.1| - 0.054 13.7 0.0 0.089 13.0 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain TAF6_C PF07571.13 gi|332797697|ref|YP_004459197.1| - 0.063 13.6 0.0 0.075 13.4 0.0 1.3 1 0 0 1 1 1 0 TAF6 C-terminal HEAT repeat domain MRP-L20 PF12824.7 gi|332797697|ref|YP_004459197.1| - 0.069 13.3 0.3 0.09 12.9 0.3 1.2 1 0 0 1 1 1 0 Mitochondrial ribosomal protein subunit L20 HTH_11 PF08279.12 gi|332797697|ref|YP_004459197.1| - 0.089 12.8 0.1 0.82 9.7 0.0 2.2 1 1 1 2 2 2 0 HTH domain Mor PF08765.11 gi|332797697|ref|YP_004459197.1| - 0.092 12.7 0.2 0.24 11.4 0.1 1.8 1 1 1 2 2 2 0 Mor transcription activator family TrmK PF04816.12 gi|332797697|ref|YP_004459197.1| - 0.1 12.1 2.8 0.11 12.0 2.8 1.0 1 0 0 1 1 1 0 tRNA (adenine(22)-N(1))-methyltransferase MFS_1 PF07690.16 gi|332797698|ref|YP_004459198.1| - 4.4e-31 108.1 69.0 4.6e-28 98.2 37.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily Thermopsin PF05317.11 gi|332797699|ref|YP_004459199.1| - 2.4e-48 164.9 5.7 2.4e-48 164.9 5.7 2.1 2 0 0 2 2 2 1 Thermopsin Lep_receptor_Ig PF06328.11 gi|332797699|ref|YP_004459199.1| - 0.026 14.5 0.0 0.093 12.7 0.0 1.9 1 0 0 1 1 1 0 Ig-like C2-type domain LRR_3 PF07725.12 gi|332797699|ref|YP_004459199.1| - 0.16 11.9 0.1 2.7e+02 1.6 0.0 4.2 4 0 0 4 4 4 0 Leucine Rich Repeat Imm26 PF15428.6 gi|332797700|ref|YP_004459200.1| - 0.17 12.1 0.1 0.26 11.5 0.0 1.2 1 1 0 1 1 1 0 Immunity protein 26 Peripla_BP_2 PF01497.18 gi|332797701|ref|YP_004459201.1| - 1e-19 71.1 0.1 5e-19 68.8 0.1 2.0 1 1 0 1 1 1 1 Periplasmic binding protein Syntaxin_2 PF14523.6 gi|332797701|ref|YP_004459201.1| - 0.16 12.4 0.9 0.28 11.6 0.1 1.7 2 0 0 2 2 2 0 Syntaxin-like protein ParE_toxin PF05016.15 gi|332797703|ref|YP_004459203.1| - 5.3e-06 27.0 0.0 6.2e-06 26.7 0.0 1.0 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE PaREP1 PF05942.11 gi|332797704|ref|YP_004459204.1| - 4.7e-25 87.7 0.8 7.4e-25 87.1 0.1 1.6 2 0 0 2 2 2 1 Archaeal PaREP1/PaREP8 family DUF2683 PF10884.8 gi|332797704|ref|YP_004459204.1| - 0.037 14.3 0.1 0.092 13.0 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2683) HpaB_N PF11794.8 gi|332797705|ref|YP_004459205.1| - 5.4e-93 311.6 0.1 7.3e-93 311.2 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HpaB PF03241.13 gi|332797705|ref|YP_004459205.1| - 1.3e-64 217.1 0.1 1.8e-64 216.6 0.1 1.2 1 0 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase C terminal Acyl-CoA_dh_M PF02770.19 gi|332797705|ref|YP_004459205.1| - 0.04 14.1 0.0 0.084 13.1 0.0 1.5 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, middle domain HAGH_C PF16123.5 gi|332797705|ref|YP_004459205.1| - 0.12 13.0 0.5 2.4 8.8 0.2 2.6 2 0 0 2 2 2 0 Hydroxyacylglutathione hydrolase C-terminus Amdase PF17645.1 gi|332797708|ref|YP_004459208.1| - 2.5e-17 63.3 0.0 3.3e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Arylmalonate decarboxylase UBA_3 PF09288.10 gi|332797708|ref|YP_004459208.1| - 0.02 14.7 1.2 0.099 12.5 0.2 2.5 2 1 1 3 3 3 0 Fungal ubiquitin-associated domain Asp_Glu_race PF01177.22 gi|332797708|ref|YP_004459208.1| - 0.021 14.7 0.0 0.06 13.2 0.0 1.8 1 1 0 1 1 1 0 Asp/Glu/Hydantoin racemase COX1 PF00115.20 gi|332797710|ref|YP_004459210.1| - 4.3e-74 249.9 62.4 8.2e-74 249.0 60.5 1.8 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I NAD_binding_8 PF13450.6 gi|332797711|ref|YP_004459211.1| - 5e-10 39.5 0.1 3.4e-08 33.6 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|332797711|ref|YP_004459211.1| - 3.3e-06 26.9 0.0 7e-06 25.9 0.0 1.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|332797711|ref|YP_004459211.1| - 0.00045 19.6 0.0 0.041 13.2 0.0 2.3 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Pyr_redox_2 PF07992.14 gi|332797711|ref|YP_004459211.1| - 0.00082 18.7 0.0 0.0057 15.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|332797711|ref|YP_004459211.1| - 0.0011 18.3 0.0 0.0021 17.3 0.0 1.5 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|332797711|ref|YP_004459211.1| - 0.003 16.7 4.5 0.0039 16.3 0.1 2.6 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|332797711|ref|YP_004459211.1| - 0.0031 16.7 0.0 0.019 14.1 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|332797711|ref|YP_004459211.1| - 0.012 14.4 0.4 0.05 12.3 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein FAD_binding_3 PF01494.19 gi|332797711|ref|YP_004459211.1| - 0.029 13.6 0.0 0.065 12.5 0.0 1.5 2 0 0 2 2 2 0 FAD binding domain REF PF05755.12 gi|332797711|ref|YP_004459211.1| - 0.097 12.5 0.3 5.4 6.8 0.3 2.2 2 0 0 2 2 2 0 Rubber elongation factor protein (REF) KGK PF08872.10 gi|332797711|ref|YP_004459211.1| - 0.12 12.9 0.9 0.3 11.6 0.1 2.0 2 0 0 2 2 2 0 KGK domain GTPase_binding PF09027.10 gi|332797711|ref|YP_004459211.1| - 0.15 12.1 0.0 1.8 8.6 0.1 2.5 2 0 0 2 2 2 0 GTPase binding DUF4127 PF13552.6 gi|332797711|ref|YP_004459211.1| - 0.16 10.6 0.0 0.22 10.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4127) NTPase_I-T PF01931.18 gi|332797712|ref|YP_004459212.1| - 6.6e-35 120.3 0.0 7.4e-35 120.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 MFS_1 PF07690.16 gi|332797713|ref|YP_004459213.1| - 1.4e-13 50.5 44.5 7.6e-07 28.4 7.2 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily Lyx_isomer PF07385.12 gi|332797715|ref|YP_004459215.1| - 0.029 13.6 0.0 0.038 13.2 0.0 1.2 1 0 0 1 1 1 0 D-lyxose isomerase BCCT PF02028.17 gi|332797715|ref|YP_004459215.1| - 0.068 11.6 0.3 0.083 11.3 0.3 1.1 1 0 0 1 1 1 0 BCCT, betaine/carnitine/choline family transporter Rep_1B PF17873.1 gi|332797717|ref|YP_004459217.1| - 0.16 11.9 0.9 8.9 6.3 0.1 2.6 2 0 0 2 2 2 0 Replicase polyprotein 1ab EIID-AGA PF03613.14 gi|332797717|ref|YP_004459217.1| - 1.3 8.1 6.7 0.66 9.1 4.9 1.4 1 1 0 1 1 1 0 PTS system mannose/fructose/sorbose family IID component TPPK_C PF12555.8 gi|332797717|ref|YP_004459217.1| - 3.7 7.7 10.4 4 7.6 0.7 2.2 1 1 1 2 2 2 0 Thiamine pyrophosphokinase C terminal VIT1 PF01988.19 gi|332797717|ref|YP_004459217.1| - 6.5 6.6 9.3 1.8 8.4 5.0 1.8 1 1 1 2 2 2 0 VIT family Xan_ur_permease PF00860.20 gi|332797718|ref|YP_004459218.1| - 0.0053 15.5 2.8 0.0067 15.2 2.8 1.1 1 0 0 1 1 1 1 Permease family 2TM PF13239.6 gi|332797718|ref|YP_004459218.1| - 0.014 15.6 1.4 0.024 14.9 1.4 1.4 1 0 0 1 1 1 0 2TM domain Phage_holin_3_6 PF07332.11 gi|332797718|ref|YP_004459218.1| - 0.53 10.3 3.8 0.76 9.8 3.8 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III UPF0126 PF03458.13 gi|332797719|ref|YP_004459219.1| - 5.8e-43 144.7 10.8 1e-23 83.0 2.6 2.2 2 0 0 2 2 2 2 UPF0126 domain EamA PF00892.20 gi|332797720|ref|YP_004459220.1| - 1.1e-28 100.2 40.5 3.2e-18 66.2 13.4 2.3 2 0 0 2 2 2 2 EamA-like transporter family UAA PF08449.11 gi|332797720|ref|YP_004459220.1| - 1.9e-06 27.4 6.1 1.9e-06 27.4 6.1 2.5 2 2 0 2 2 2 1 UAA transporter family TPT PF03151.16 gi|332797720|ref|YP_004459220.1| - 0.00036 20.0 17.8 0.0036 16.7 17.8 2.5 1 1 0 1 1 1 1 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|332797720|ref|YP_004459220.1| - 0.032 14.3 1.9 0.032 14.3 1.9 3.2 3 1 0 3 3 3 0 Putative transmembrane family 234 TPR_2 PF07719.17 gi|332797722|ref|YP_004459222.1| - 3.7e-26 89.1 25.7 1.5e-06 27.8 0.5 8.0 6 1 2 8 8 8 5 Tetratricopeptide repeat TPR_1 PF00515.28 gi|332797722|ref|YP_004459222.1| - 8.3e-22 76.1 35.5 2.9e-09 36.4 1.1 7.6 8 0 0 8 8 8 5 Tetratricopeptide repeat TPR_19 PF14559.6 gi|332797722|ref|YP_004459222.1| - 4.2e-18 65.6 9.9 6.7e-06 26.5 0.1 4.5 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|332797722|ref|YP_004459222.1| - 1.7e-16 59.3 7.4 0.00071 19.8 0.0 6.5 6 1 1 7 7 7 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|332797722|ref|YP_004459222.1| - 2e-16 59.4 21.8 7.3e-10 38.4 0.6 6.1 3 2 3 6 6 6 3 TPR repeat TPR_8 PF13181.6 gi|332797722|ref|YP_004459222.1| - 1.2e-15 56.3 31.6 8e-08 31.9 1.9 7.2 8 0 0 8 8 7 4 Tetratricopeptide repeat TPR_14 PF13428.6 gi|332797722|ref|YP_004459222.1| - 3.1e-15 55.6 4.3 0.0094 16.7 0.0 6.9 1 1 7 8 8 8 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|332797722|ref|YP_004459222.1| - 1.5e-13 51.1 3.4 0.0061 17.2 0.0 4.7 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|332797722|ref|YP_004459222.1| - 5.8e-09 36.1 9.9 0.002 18.4 0.2 5.3 4 1 2 6 6 6 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|332797722|ref|YP_004459222.1| - 1.1e-08 35.1 0.1 0.44 10.7 0.0 5.3 1 1 4 6 6 6 4 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|332797722|ref|YP_004459222.1| - 3.4e-08 33.6 12.6 0.022 15.0 0.1 4.6 3 2 1 4 4 4 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_7 PF13176.6 gi|332797722|ref|YP_004459222.1| - 6.7e-08 32.0 5.2 0.029 14.4 0.0 5.4 5 1 1 6 6 5 2 Tetratricopeptide repeat TPR_6 PF13174.6 gi|332797722|ref|YP_004459222.1| - 3e-07 30.6 14.3 0.21 12.3 0.2 6.9 8 0 0 8 8 7 2 Tetratricopeptide repeat BTAD PF03704.17 gi|332797722|ref|YP_004459222.1| - 6.1e-06 26.7 1.8 1.2 9.5 0.1 3.7 2 2 1 4 4 4 1 Bacterial transcriptional activator domain NARP1 PF12569.8 gi|332797722|ref|YP_004459222.1| - 1.5e-05 24.1 13.3 0.00079 18.5 1.2 3.8 1 1 1 3 3 3 3 NMDA receptor-regulated protein 1 TPR_20 PF14561.6 gi|332797722|ref|YP_004459222.1| - 7e-05 23.1 2.0 4.4 7.7 0.0 4.8 2 2 4 6 6 6 1 Tetratricopeptide repeat Clathrin PF00637.20 gi|332797722|ref|YP_004459222.1| - 0.00031 20.7 4.9 0.00031 20.7 4.9 2.9 2 1 1 3 3 3 1 Region in Clathrin and VPS FAT PF02259.23 gi|332797722|ref|YP_004459222.1| - 0.0034 16.6 3.2 0.9 8.7 3.2 2.3 1 1 0 1 1 1 1 FAT domain TPR_10 PF13374.6 gi|332797722|ref|YP_004459222.1| - 0.0071 16.2 8.2 0.64 10.0 0.1 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat MIT PF04212.18 gi|332797722|ref|YP_004459222.1| - 0.0088 16.1 0.7 0.0088 16.1 0.7 3.7 3 1 0 3 3 2 1 MIT (microtubule interacting and transport) domain TPR_21 PF09976.9 gi|332797722|ref|YP_004459222.1| - 0.022 14.5 4.2 0.66 9.7 0.1 3.3 2 1 1 3 3 3 0 Tetratricopeptide repeat-like domain YfdX PF10938.8 gi|332797722|ref|YP_004459222.1| - 0.032 14.2 4.9 3.9 7.4 0.6 4.3 2 2 1 3 3 3 0 YfdX protein DUF3856 PF12968.7 gi|332797722|ref|YP_004459222.1| - 0.051 13.6 5.0 5.2 7.1 0.9 3.7 2 2 1 3 3 3 0 Domain of Unknown Function (DUF3856) DUF4423 PF14394.6 gi|332797722|ref|YP_004459222.1| - 0.091 12.5 1.8 1.9 8.1 0.4 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4423) MTTB PF06253.11 gi|332797722|ref|YP_004459222.1| - 0.11 10.5 0.0 0.15 10.0 0.0 1.1 1 0 0 1 1 1 0 Trimethylamine methyltransferase (MTTB) Cas_Cas02710 PF09670.10 gi|332797722|ref|YP_004459222.1| - 0.13 11.0 8.2 0.023 13.5 0.9 2.3 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_Cas02710) PPR PF01535.20 gi|332797722|ref|YP_004459222.1| - 0.15 12.4 7.3 48 4.5 0.3 5.0 5 1 0 5 5 5 0 PPR repeat Sel1 PF08238.12 gi|332797722|ref|YP_004459222.1| - 0.15 12.8 6.0 45 4.9 0.4 4.4 4 0 0 4 4 4 0 Sel1 repeat Wzy_C_2 PF11846.8 gi|332797722|ref|YP_004459222.1| - 0.19 11.6 0.2 18 5.2 0.0 2.4 2 1 0 2 2 2 0 Virulence factor membrane-bound polymerase, C-terminal DUF4363 PF14276.6 gi|332797722|ref|YP_004459222.1| - 0.24 11.5 11.3 8.2 6.6 2.6 3.8 2 2 1 3 3 3 0 Domain of unknown function (DUF4363) DUF357 PF04010.13 gi|332797722|ref|YP_004459222.1| - 1.7 8.8 8.8 5.7 7.1 0.1 3.7 3 1 0 3 3 3 0 Protein of unknown function (DUF357) Pkinase PF00069.25 gi|332797723|ref|YP_004459223.1| - 5e-28 98.2 0.2 7.4e-28 97.6 0.2 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|332797723|ref|YP_004459223.1| - 1.3e-10 41.0 0.0 3.7e-10 39.5 0.0 1.7 1 1 0 1 1 1 1 Protein tyrosine kinase Peptidase_C97 PF05903.14 gi|332797723|ref|YP_004459223.1| - 0.015 15.1 0.6 0.055 13.3 0.6 1.9 1 0 0 1 1 1 0 PPPDE putative peptidase domain TPR_2 PF07719.17 gi|332797723|ref|YP_004459223.1| - 0.11 12.7 0.1 30 5.1 0.0 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat BcrAD_BadFG PF01869.20 gi|332797724|ref|YP_004459224.1| - 4.8e-33 114.8 0.8 6.1e-33 114.5 0.8 1.1 1 0 0 1 1 1 1 BadF/BadG/BcrA/BcrD ATPase family Methyltransf_8 PF05148.15 gi|332797724|ref|YP_004459224.1| - 0.0098 15.8 0.4 0.78 9.5 0.0 3.0 2 1 0 3 3 3 1 Hypothetical methyltransferase FtsA PF14450.6 gi|332797724|ref|YP_004459224.1| - 0.012 16.0 0.3 0.048 14.1 0.2 2.0 1 1 1 2 2 2 0 Cell division protein FtsA CCG PF02754.16 gi|332797725|ref|YP_004459225.1| - 4.8e-11 42.7 0.0 4.6e-06 26.8 0.0 2.5 2 0 0 2 2 2 2 Cysteine-rich domain 40S_S4_C PF16121.5 gi|332797725|ref|YP_004459225.1| - 0.035 13.8 0.2 0.15 11.7 0.0 2.1 2 0 0 2 2 2 0 40S ribosomal protein S4 C-terminus PARP_reg PF02877.14 gi|332797725|ref|YP_004459225.1| - 0.14 12.3 0.0 0.52 10.4 0.0 2.0 2 1 0 2 2 2 0 Poly(ADP-ribose) polymerase, regulatory domain LUD_dom PF02589.15 gi|332797726|ref|YP_004459226.1| - 2.1e-50 171.1 0.2 3.8e-50 170.2 0.2 1.4 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|332797726|ref|YP_004459226.1| - 1.1e-09 38.5 1.0 2.2e-09 37.6 1.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797726|ref|YP_004459226.1| - 1e-07 32.0 1.2 0.0061 16.6 0.2 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797726|ref|YP_004459226.1| - 8.7e-07 29.4 2.4 2.4e-06 28.0 2.5 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797726|ref|YP_004459226.1| - 0.00012 22.5 6.0 0.0003 21.3 6.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|332797726|ref|YP_004459226.1| - 0.00029 20.6 1.1 0.19 11.5 0.1 2.6 2 0 0 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|332797726|ref|YP_004459226.1| - 0.0033 17.4 10.0 0.035 14.2 2.4 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|332797726|ref|YP_004459226.1| - 0.0036 17.4 5.6 0.28 11.4 1.3 2.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332797726|ref|YP_004459226.1| - 0.0048 16.6 8.9 0.023 14.5 1.7 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332797726|ref|YP_004459226.1| - 0.024 14.8 6.5 0.13 12.5 6.5 2.1 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332797726|ref|YP_004459226.1| - 0.033 15.1 5.3 1.1 10.2 0.9 2.5 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain OspD PF03207.13 gi|332797726|ref|YP_004459226.1| - 0.033 13.5 0.1 0.053 12.9 0.1 1.2 1 0 0 1 1 1 0 Borrelia outer surface protein D (OspD) Fer4_22 PF17179.4 gi|332797726|ref|YP_004459226.1| - 0.036 14.9 3.0 1.2 10.1 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain NAGLU_N PF12971.7 gi|332797726|ref|YP_004459226.1| - 0.038 13.8 0.0 0.099 12.4 0.0 1.7 1 0 0 1 1 1 0 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain Peptidase_C23 PF05379.11 gi|332797726|ref|YP_004459226.1| - 0.039 14.1 0.0 0.13 12.4 0.0 1.8 2 0 0 2 2 1 0 Carlavirus endopeptidase Fer4_18 PF13746.6 gi|332797726|ref|YP_004459226.1| - 0.051 13.8 1.4 1.3 9.3 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|332797726|ref|YP_004459226.1| - 0.074 13.2 7.5 0.16 12.1 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF1574 PF07611.11 gi|332797726|ref|YP_004459226.1| - 0.2 11.0 0.1 0.3 10.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1574) Fer4_4 PF12800.7 gi|332797726|ref|YP_004459226.1| - 0.41 11.3 5.7 1 10.0 0.4 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain PIN PF01850.21 gi|332797727|ref|YP_004459227.1| - 3.2e-19 69.6 4.1 3.8e-19 69.4 4.1 1.1 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|332797727|ref|YP_004459227.1| - 0.11 13.2 0.2 0.2 12.4 0.2 1.4 1 1 0 1 1 1 0 PIN domain RHH_1 PF01402.21 gi|332797728|ref|YP_004459228.1| - 0.0033 17.3 2.5 0.0043 16.9 0.4 2.1 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family DUF4602 PF15375.6 gi|332797728|ref|YP_004459228.1| - 0.012 15.9 0.4 0.014 15.8 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4602) DUF5388 PF17363.2 gi|332797728|ref|YP_004459228.1| - 0.043 14.0 0.3 0.077 13.2 0.3 1.7 1 1 0 1 1 1 0 Family of unknown function (DUF5388) Voltage_CLC PF00654.20 gi|332797729|ref|YP_004459229.1| - 2.1e-79 267.3 34.3 1.1e-78 265.0 28.5 2.1 2 0 0 2 2 2 2 Voltage gated chloride channel CBS PF00571.28 gi|332797729|ref|YP_004459229.1| - 6.2e-15 55.4 0.0 1.5e-07 31.7 0.0 2.6 2 0 0 2 2 2 2 CBS domain HEPN PF05168.14 gi|332797730|ref|YP_004459230.1| - 0.013 15.7 4.6 0.032 14.4 4.6 1.6 1 1 0 1 1 1 0 HEPN domain Rap_GAP PF02145.15 gi|332797731|ref|YP_004459231.1| - 0.034 13.7 1.2 0.051 13.1 1.2 1.5 1 1 0 1 1 1 0 Rap/ran-GAP PPR_2 PF13041.6 gi|332797731|ref|YP_004459231.1| - 0.085 13.1 0.2 0.7 10.1 0.0 2.2 1 1 1 2 2 2 0 PPR repeat family PPR PF01535.20 gi|332797731|ref|YP_004459231.1| - 0.12 12.7 0.0 0.27 11.6 0.0 1.6 1 0 0 1 1 1 0 PPR repeat ATP-grasp_5 PF13549.6 gi|332797732|ref|YP_004459232.1| - 2e-48 164.8 1.0 4.2e-48 163.7 1.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|332797732|ref|YP_004459232.1| - 6e-47 158.9 0.8 2.7e-45 153.6 0.1 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|332797732|ref|YP_004459232.1| - 6.2e-25 88.0 0.3 6.8e-24 84.6 0.0 2.7 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|332797732|ref|YP_004459232.1| - 1.9e-12 47.7 0.3 6.7e-12 45.9 0.3 2.0 1 0 0 1 1 1 1 CoA binding domain GARS_A PF01071.19 gi|332797732|ref|YP_004459232.1| - 0.00037 20.3 0.2 0.0011 18.8 0.2 1.8 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_2 PF08442.10 gi|332797732|ref|YP_004459232.1| - 0.00066 19.3 3.8 0.0029 17.2 1.3 2.8 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.22 gi|332797732|ref|YP_004459232.1| - 0.0076 15.8 0.5 0.023 14.3 0.1 2.0 2 0 0 2 2 2 1 ATP-grasp domain RimK PF08443.11 gi|332797732|ref|YP_004459232.1| - 0.01 15.4 0.9 0.02 14.5 0.3 1.8 2 0 0 2 2 2 0 RimK-like ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|332797732|ref|YP_004459232.1| - 0.047 14.5 0.1 2.5 9.0 0.0 2.8 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_D2 PF02786.17 gi|332797732|ref|YP_004459232.1| - 0.056 12.9 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Lactamase_B PF00753.27 gi|332797733|ref|YP_004459233.1| - 5.7e-20 72.2 0.3 2.8e-19 69.9 0.5 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|332797733|ref|YP_004459233.1| - 6.3e-05 22.6 0.1 0.00012 21.7 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AA_permease_2 PF13520.6 gi|332797734|ref|YP_004459234.1| - 3.8e-35 121.5 60.4 3.8e-35 121.5 60.4 2.4 1 1 1 2 2 2 1 Amino acid permease AA_permease PF00324.21 gi|332797734|ref|YP_004459234.1| - 1.9e-25 89.4 59.7 1.9e-25 89.4 59.7 2.4 2 1 0 2 2 2 1 Amino acid permease 60KD_IMP PF02096.20 gi|332797734|ref|YP_004459234.1| - 2.3 8.1 6.3 1.1 9.2 0.2 3.1 1 1 1 2 2 2 0 60Kd inner membrane protein AMP-binding PF00501.28 gi|332797735|ref|YP_004459235.1| - 7.5e-83 278.5 0.0 9.8e-83 278.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|332797735|ref|YP_004459235.1| - 1.2e-25 90.3 0.7 2.4e-25 89.3 0.7 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|332797735|ref|YP_004459235.1| - 3.7e-16 58.8 0.9 7.2e-16 57.9 0.9 1.5 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus Glu_dehyd_C PF16912.5 gi|332797736|ref|YP_004459236.1| - 9e-33 113.5 0.0 1.2e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|332797736|ref|YP_004459236.1| - 2.4e-23 82.1 2.3 3.3e-23 81.6 1.3 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain FAD_binding_3 PF01494.19 gi|332797736|ref|YP_004459236.1| - 0.005 16.1 0.0 0.0081 15.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain ADH_zinc_N PF00107.26 gi|332797736|ref|YP_004459236.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase ApbA PF02558.16 gi|332797736|ref|YP_004459236.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|332797736|ref|YP_004459236.1| - 0.054 12.7 0.0 0.14 11.3 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ADH_N_2 PF16884.5 gi|332797736|ref|YP_004459236.1| - 0.094 12.6 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase 2-Hacid_dh_C PF02826.19 gi|332797736|ref|YP_004459236.1| - 0.14 11.6 0.0 0.25 10.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Piezo_RRas_bdg PF12166.8 gi|332797737|ref|YP_004459237.1| - 0.071 12.4 0.2 0.071 12.4 0.2 2.4 3 0 0 3 3 3 0 Piezo non-specific cation channel, R-Ras-binding domain Coa1 PF08695.10 gi|332797737|ref|YP_004459237.1| - 3.1 7.6 6.9 3.1 7.6 0.0 3.1 3 0 0 3 3 3 0 Cytochrome oxidase complex assembly protein 1 RIFIN PF02009.16 gi|332797737|ref|YP_004459237.1| - 5.9 6.7 5.7 12 5.7 5.7 1.5 1 0 0 1 1 1 0 Rifin Epimerase PF01370.21 gi|332797738|ref|YP_004459238.1| - 6.3e-41 140.4 0.1 8.1e-41 140.1 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|332797738|ref|YP_004459238.1| - 1.2e-35 123.6 0.2 4.3e-34 118.4 0.2 2.3 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|332797738|ref|YP_004459238.1| - 4.2e-10 39.2 0.0 5e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|332797738|ref|YP_004459238.1| - 1e-09 37.9 0.7 2.8e-09 36.4 0.7 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|332797738|ref|YP_004459238.1| - 6.2e-09 35.4 0.0 1.6e-05 24.2 0.0 2.4 2 1 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|332797738|ref|YP_004459238.1| - 2.7e-07 30.0 1.4 5.2e-05 22.5 1.4 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|332797738|ref|YP_004459238.1| - 0.0016 18.4 0.0 0.07 13.0 0.0 2.2 2 0 0 2 2 2 1 KR domain LPD11 PF18824.1 gi|332797738|ref|YP_004459238.1| - 0.0083 16.2 0.1 5.1 7.2 0.1 2.4 2 0 0 2 2 2 2 Large polyvalent protein-associated domain 11 Sre PF03125.18 gi|332797739|ref|YP_004459239.1| - 0.2 10.7 8.1 0.23 10.6 8.1 1.0 1 0 0 1 1 1 0 C. elegans Sre G protein-coupled chemoreceptor Phage_holin_3_6 PF07332.11 gi|332797739|ref|YP_004459239.1| - 0.24 11.4 5.5 0.25 11.4 5.5 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Nbas_N PF15492.6 gi|332797740|ref|YP_004459240.1| - 0.99 8.7 4.1 0.33 10.3 0.7 1.7 2 0 0 2 2 2 0 Neuroblastoma-amplified sequence, N terminal DUF5418 PF17439.2 gi|332797740|ref|YP_004459240.1| - 6.7 6.8 10.6 6.7 6.8 1.5 2.6 1 1 0 2 2 2 0 Family of unknown function (DUF5418) ABC_tran PF00005.27 gi|332797742|ref|YP_004459242.1| - 5.2e-22 78.8 0.4 2.2e-07 31.4 0.0 3.4 2 1 1 3 3 3 3 ABC transporter AAA_21 PF13304.6 gi|332797742|ref|YP_004459242.1| - 2.2e-09 37.6 1.3 0.011 15.5 0.0 3.3 2 2 1 3 3 3 3 AAA domain, putative AbiEii toxin, Type IV TA system DUF4110 PF13422.6 gi|332797742|ref|YP_004459242.1| - 0.001 19.1 0.1 0.0023 18.0 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4110) AAA_22 PF13401.6 gi|332797742|ref|YP_004459242.1| - 0.0017 18.6 0.0 0.0037 17.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|332797742|ref|YP_004459242.1| - 0.0025 17.6 5.8 0.0081 15.9 0.2 3.2 1 1 0 3 3 3 1 AAA ATPase domain AAA PF00004.29 gi|332797742|ref|YP_004459242.1| - 0.0025 18.2 0.0 0.0065 16.9 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|332797742|ref|YP_004459242.1| - 0.0045 16.5 1.0 4.3 6.7 0.0 3.7 2 2 2 4 4 4 1 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.6 gi|332797742|ref|YP_004459242.1| - 0.0087 16.3 0.0 0.41 10.9 0.0 2.6 2 0 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_24 PF13479.6 gi|332797742|ref|YP_004459242.1| - 0.01 15.6 0.0 0.02 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|332797742|ref|YP_004459242.1| - 0.014 15.5 1.4 0.042 13.9 0.2 2.5 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|332797742|ref|YP_004459242.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 RsgA GTPase NACHT PF05729.12 gi|332797742|ref|YP_004459242.1| - 0.023 14.6 0.0 0.074 13.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_19 PF13245.6 gi|332797742|ref|YP_004459242.1| - 0.039 14.3 0.1 0.091 13.1 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|332797742|ref|YP_004459242.1| - 0.049 13.8 0.0 0.11 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|332797742|ref|YP_004459242.1| - 0.054 13.4 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Rad17 P-loop domain SRP54 PF00448.22 gi|332797742|ref|YP_004459242.1| - 0.072 12.7 0.1 0.15 11.6 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|332797742|ref|YP_004459242.1| - 0.076 12.8 0.1 0.2 11.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Roc PF08477.13 gi|332797742|ref|YP_004459242.1| - 0.1 12.9 0.1 0.16 12.2 0.1 1.5 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_16 PF13191.6 gi|332797742|ref|YP_004459242.1| - 0.14 12.5 0.0 0.28 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain Hjc PF01870.18 gi|332797743|ref|YP_004459243.1| - 1.4e-21 76.3 0.0 1.7e-21 76.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF4883 PF16224.5 gi|332797743|ref|YP_004459243.1| - 0.095 13.0 0.1 3.6 7.9 0.0 2.1 2 0 0 2 2 2 0 DOmain of unknown function (DUF4883) Haem_bd PF14376.6 gi|332797743|ref|YP_004459243.1| - 0.13 12.2 0.1 0.24 11.3 0.0 1.5 2 0 0 2 2 2 0 Haem-binding domain HTH_24 PF13412.6 gi|332797744|ref|YP_004459244.1| - 9.8e-19 66.7 0.1 2.2e-14 52.7 0.1 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|332797744|ref|YP_004459244.1| - 7.1e-12 45.0 0.0 1.1e-08 34.7 0.0 2.5 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|332797744|ref|YP_004459244.1| - 7e-07 29.1 0.2 0.04 13.8 0.0 2.6 3 0 0 3 3 3 2 MarR family HTH_11 PF08279.12 gi|332797744|ref|YP_004459244.1| - 1.9e-06 27.7 0.5 0.00064 19.6 0.1 2.5 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.7 gi|332797744|ref|YP_004459244.1| - 0.00012 21.9 0.0 0.061 13.2 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|332797744|ref|YP_004459244.1| - 0.00026 20.8 0.0 0.11 12.4 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.12 gi|332797744|ref|YP_004459244.1| - 0.001 18.8 0.1 0.0026 17.5 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_10 PF04967.12 gi|332797744|ref|YP_004459244.1| - 0.0028 17.4 0.0 0.87 9.4 0.0 2.6 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Crp_2 PF13545.6 gi|332797744|ref|YP_004459244.1| - 0.0044 17.0 0.0 0.13 12.2 0.0 2.2 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|332797744|ref|YP_004459244.1| - 0.0044 16.7 0.2 1.3 8.7 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_36 PF13730.6 gi|332797744|ref|YP_004459244.1| - 0.0072 16.3 0.1 0.065 13.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain RepL PF05732.11 gi|332797744|ref|YP_004459244.1| - 0.014 14.9 0.0 2 7.8 0.0 2.3 2 0 0 2 2 2 0 Firmicute plasmid replication protein (RepL) Phage_rep_O PF04492.13 gi|332797744|ref|YP_004459244.1| - 0.017 15.7 0.1 1.2 9.7 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage replication protein O TrmB PF01978.19 gi|332797744|ref|YP_004459244.1| - 0.017 15.0 0.5 0.92 9.4 0.1 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GerE PF00196.19 gi|332797744|ref|YP_004459244.1| - 0.03 13.9 0.1 0.47 10.0 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Mga PF05043.13 gi|332797744|ref|YP_004459244.1| - 0.03 14.9 0.3 1.2 9.7 0.0 2.4 2 0 0 2 2 2 0 Mga helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|332797744|ref|YP_004459244.1| - 0.04 14.1 0.6 0.092 12.9 0.1 2.0 2 1 0 2 2 1 0 B-block binding subunit of TFIIIC HTH_50 PF18024.1 gi|332797744|ref|YP_004459244.1| - 0.043 13.4 0.0 0.1 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|332797744|ref|YP_004459244.1| - 0.12 12.4 0.3 0.85 9.6 0.1 2.3 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_Tnp_ISL3 PF13542.6 gi|332797744|ref|YP_004459244.1| - 0.15 11.5 0.0 17 4.9 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|332797744|ref|YP_004459244.1| - 0.16 11.8 0.1 10 6.1 0.0 2.3 2 0 0 2 2 2 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|332797744|ref|YP_004459244.1| - 0.16 11.5 0.0 11 5.7 0.0 2.5 2 0 0 2 2 2 0 Sigma-70, region 4 GntR PF00392.21 gi|332797744|ref|YP_004459244.1| - 0.2 11.3 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family Nudix_N_2 PF14803.6 gi|332797745|ref|YP_004459245.1| - 0.00059 19.7 2.1 0.00094 19.1 1.9 1.5 1 1 0 1 1 1 1 Nudix N-terminal UPF0547 PF10571.9 gi|332797745|ref|YP_004459245.1| - 0.0007 19.6 5.4 0.00083 19.4 0.2 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.6 gi|332797745|ref|YP_004459245.1| - 0.002 17.4 0.5 0.0029 16.9 0.5 1.2 1 0 0 1 1 1 1 Transcription factor zinc-finger HypA PF01155.19 gi|332797745|ref|YP_004459245.1| - 0.0028 17.7 0.4 0.0031 17.5 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|332797745|ref|YP_004459245.1| - 0.0029 17.0 4.2 0.25 10.8 0.6 2.5 1 1 1 2 2 2 2 zinc-ribbon domain DUF2256 PF10013.9 gi|332797745|ref|YP_004459245.1| - 0.0034 17.5 1.5 2.3 8.4 0.7 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2256) DZR PF12773.7 gi|332797745|ref|YP_004459245.1| - 0.0049 16.9 0.3 0.0084 16.1 0.3 1.4 1 1 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.6 gi|332797745|ref|YP_004459245.1| - 0.0069 16.3 3.1 0.01 15.8 3.1 1.3 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 YhfH PF14149.6 gi|332797745|ref|YP_004459245.1| - 0.0088 16.0 1.4 0.64 10.0 0.0 2.1 2 0 0 2 2 2 1 YhfH-like protein Zn-C2H2_12 PF18112.1 gi|332797745|ref|YP_004459245.1| - 0.022 15.2 8.6 0.54 10.8 2.0 2.2 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-C2H2_4 PF13894.6 gi|332797745|ref|YP_004459245.1| - 0.025 15.4 1.1 2.9 9.0 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger OrfB_Zn_ribbon PF07282.11 gi|332797745|ref|YP_004459245.1| - 0.033 14.1 1.7 0.36 10.8 1.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-H2C2_2 PF13465.6 gi|332797745|ref|YP_004459245.1| - 0.039 14.4 1.8 1.3 9.5 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-FPG_IleRS PF06827.14 gi|332797745|ref|YP_004459245.1| - 0.04 13.8 1.7 1.6 8.7 0.4 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-NADH-PPase PF09297.11 gi|332797745|ref|YP_004459245.1| - 0.046 13.4 0.5 0.63 9.8 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2072 PF09845.9 gi|332797745|ref|YP_004459245.1| - 0.064 13.5 0.2 0.07 13.4 0.2 1.2 1 0 0 1 1 1 0 Zn-ribbon containing protein A2L_zn_ribbon PF08792.10 gi|332797745|ref|YP_004459245.1| - 0.068 12.9 4.6 0.9 9.3 4.6 2.2 1 1 0 1 1 1 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|332797745|ref|YP_004459245.1| - 0.068 13.2 4.3 1.3 9.1 0.3 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|332797745|ref|YP_004459245.1| - 0.074 13.2 2.9 0.18 11.9 2.9 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|332797745|ref|YP_004459245.1| - 0.082 13.4 2.8 1.2 9.7 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type IBR PF01485.21 gi|332797745|ref|YP_004459245.1| - 0.083 13.1 0.9 0.11 12.8 0.9 1.2 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Auto_anti-p27 PF06677.12 gi|332797745|ref|YP_004459245.1| - 0.088 13.0 2.3 3.1 8.0 0.0 2.2 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CpXC PF14353.6 gi|332797745|ref|YP_004459245.1| - 0.11 12.6 0.7 0.29 11.2 0.0 1.8 1 1 1 2 2 2 0 CpXC protein DUF2225 PF09986.9 gi|332797745|ref|YP_004459245.1| - 0.12 12.1 5.5 1.1 9.0 0.7 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2225) zf-C2H2_6 PF13912.6 gi|332797745|ref|YP_004459245.1| - 0.13 12.3 4.5 1.1 9.3 0.4 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger zinc_ribbon_9 PF14369.6 gi|332797745|ref|YP_004459245.1| - 0.2 12.0 3.1 0.78 10.1 3.5 1.7 1 1 1 2 2 2 0 zinc-ribbon zf_UBZ PF18439.1 gi|332797745|ref|YP_004459245.1| - 0.22 11.2 2.0 4.6 6.9 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-piccolo PF05715.13 gi|332797745|ref|YP_004459245.1| - 0.24 11.6 2.7 0.62 10.2 2.7 1.7 1 1 0 1 1 1 0 Piccolo Zn-finger TF_Zn_Ribbon PF08271.12 gi|332797745|ref|YP_004459245.1| - 0.36 10.4 7.6 1.8 8.1 7.6 2.0 1 1 0 1 1 1 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|332797745|ref|YP_004459245.1| - 0.71 9.9 3.2 1.1 9.4 1.2 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Aconitase PF00330.20 gi|332797746|ref|YP_004459246.1| - 6.9e-79 266.0 3.2 2.7e-47 161.9 0.1 2.5 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|332797746|ref|YP_004459246.1| - 0.00054 18.8 0.0 0.0008 18.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Dimerisation PF08100.11 gi|332797746|ref|YP_004459246.1| - 0.2 11.7 0.0 4.6 7.3 0.0 3.1 4 0 0 4 4 4 0 Dimerisation domain Aconitase_C PF00694.19 gi|332797747|ref|YP_004459247.1| - 2e-22 79.9 0.0 2.9e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain IlvN PF07991.12 gi|332797747|ref|YP_004459247.1| - 0.0044 16.6 0.1 0.0063 16.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aconitase_2_N PF06434.13 gi|332797747|ref|YP_004459247.1| - 0.037 13.7 2.9 1.9 8.1 2.9 2.1 1 1 0 1 1 1 0 Aconitate hydratase 2 N-terminus Nitroreductase PF00881.24 gi|332797748|ref|YP_004459248.1| - 4.4e-29 101.7 0.0 6.8e-29 101.1 0.0 1.3 1 1 0 1 1 1 1 Nitroreductase family TM1586_NiRdase PF14512.6 gi|332797748|ref|YP_004459248.1| - 8e-06 25.6 0.0 0.078 12.5 0.0 3.0 2 1 1 3 3 3 3 Putative TM nitroreductase DUF1959 PF09218.10 gi|332797748|ref|YP_004459248.1| - 0.014 15.5 0.4 0.023 14.8 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1959) PaREP1 PF05942.11 gi|332797749|ref|YP_004459249.1| - 3.4e-18 65.7 0.1 5.1e-18 65.1 0.1 1.3 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family DUF5339 PF17274.2 gi|332797749|ref|YP_004459249.1| - 0.0062 17.4 0.9 0.028 15.2 1.0 2.0 2 1 0 2 2 2 1 Family of unknown function (DUF5339) UPF0302 PF08864.10 gi|332797749|ref|YP_004459249.1| - 0.013 15.6 0.2 0.089 12.9 0.0 2.1 2 0 0 2 2 2 0 UPF0302 domain HEPN PF05168.14 gi|332797749|ref|YP_004459249.1| - 0.022 14.9 0.5 0.037 14.1 0.5 1.7 1 1 0 1 1 1 0 HEPN domain PaREP1 PF05942.11 gi|332797750|ref|YP_004459250.1| - 5.8e-18 64.9 3.8 7.6e-18 64.5 3.8 1.1 1 0 0 1 1 1 1 Archaeal PaREP1/PaREP8 family SpoVIF PF14069.6 gi|332797750|ref|YP_004459250.1| - 0.0073 16.1 0.3 0.01 15.6 0.2 1.4 1 1 0 1 1 1 1 Stage VI sporulation protein F PNK3P PF08645.11 gi|332797750|ref|YP_004459250.1| - 0.037 13.7 0.4 0.046 13.4 0.4 1.3 1 1 0 1 1 1 0 Polynucleotide kinase 3 phosphatase DUF357 PF04010.13 gi|332797750|ref|YP_004459250.1| - 0.043 13.9 0.6 0.15 12.2 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF357) AIRS_C PF02769.22 gi|332797752|ref|YP_004459252.1| - 2.4e-20 73.2 0.0 4.3e-20 72.4 0.0 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|332797752|ref|YP_004459252.1| - 1.1e-11 45.2 0.0 1.9e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain DUF123 PF01986.16 gi|332797753|ref|YP_004459253.1| - 2.7e-14 53.4 0.0 4.1e-14 52.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF123 PNGaseA PF12222.8 gi|332797755|ref|YP_004459255.1| - 1.4e-32 113.1 0.3 1.9e-30 106.1 0.3 2.2 1 1 0 1 1 1 1 Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A DUF5013 PF16405.5 gi|332797755|ref|YP_004459255.1| - 0.09 13.0 0.1 24 5.2 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF5013) Pro-kuma_activ PF09286.11 gi|332797756|ref|YP_004459256.1| - 2.8e-13 50.4 0.0 6.3e-13 49.2 0.0 1.5 1 0 0 1 1 1 1 Pro-kumamolisin, activation domain Peptidase_S8 PF00082.22 gi|332797756|ref|YP_004459256.1| - 0.00058 19.2 0.2 0.0013 18.1 0.2 1.5 1 0 0 1 1 1 1 Subtilase family MG2 PF01835.19 gi|332797756|ref|YP_004459256.1| - 0.05 14.1 0.0 8.4 6.9 0.0 3.1 2 0 0 2 2 2 0 MG2 domain Exo_endo_phos PF03372.23 gi|332797757|ref|YP_004459257.1| - 1.8e-21 76.7 0.0 2.2e-21 76.4 0.0 1.1 1 0 0 1 1 1 1 Endonuclease/Exonuclease/phosphatase family Exo_endo_phos_2 PF14529.6 gi|332797757|ref|YP_004459257.1| - 2.3e-06 27.5 0.0 3.6e-05 23.6 0.0 2.2 1 1 0 1 1 1 1 Endonuclease-reverse transcriptase Nitro_FeMo-Co PF02579.17 gi|332797758|ref|YP_004459258.1| - 1.6e-12 47.6 0.1 2.1e-12 47.2 0.1 1.2 1 0 0 1 1 1 1 Dinitrogenase iron-molybdenum cofactor TAFII28 PF04719.14 gi|332797758|ref|YP_004459258.1| - 0.068 13.3 0.0 0.093 12.8 0.0 1.2 1 0 0 1 1 1 0 hTAFII28-like protein conserved region DrsE PF02635.15 gi|332797759|ref|YP_004459259.1| - 1.7e-14 54.2 0.1 1.9e-14 54.0 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|332797759|ref|YP_004459259.1| - 0.00017 21.5 0.1 0.00023 21.1 0.1 1.2 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family Aminotran_5 PF00266.19 gi|332797760|ref|YP_004459260.1| - 1.4e-32 113.1 0.0 1.8e-32 112.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V NAD_binding_7 PF13241.6 gi|332797760|ref|YP_004459260.1| - 0.02 15.3 0.0 0.038 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding DsrH PF04077.12 gi|332797760|ref|YP_004459260.1| - 0.15 12.2 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 DsrH like protein Phosphodiest PF01663.22 gi|332797761|ref|YP_004459261.1| - 1e-17 64.8 0.1 5.3e-17 62.4 0.1 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|332797761|ref|YP_004459261.1| - 3.2e-09 37.1 0.0 1.1e-05 25.6 0.0 2.4 1 1 0 2 2 2 2 PglZ domain Metalloenzyme PF01676.18 gi|332797761|ref|YP_004459261.1| - 0.024 14.0 0.1 0.072 12.4 0.1 1.9 1 1 0 1 1 1 0 Metalloenzyme superfamily DUF973 PF06157.11 gi|332797762|ref|YP_004459262.1| - 3.5e-20 72.3 0.6 5.2e-20 71.7 0.6 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF973) 40S_SA_C PF16122.5 gi|332797762|ref|YP_004459262.1| - 0.12 13.7 0.4 0.21 13.0 0.4 1.3 1 0 0 1 1 1 0 40S ribosomal protein SA C-terminus Flo11 PF10182.9 gi|332797762|ref|YP_004459262.1| - 0.17 12.0 0.1 0.29 11.3 0.1 1.3 1 0 0 1 1 1 0 Flo11 domain HEPN PF05168.14 gi|332797763|ref|YP_004459263.1| - 0.00035 20.7 0.7 0.00037 20.6 0.7 1.0 1 0 0 1 1 1 1 HEPN domain NTP_transf_2 PF01909.23 gi|332797764|ref|YP_004459264.1| - 5.9e-11 42.5 1.1 6.4e-11 42.4 1.1 1.1 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|332797764|ref|YP_004459264.1| - 1.6e-09 37.7 0.2 1.9e-09 37.5 0.2 1.2 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase MdcG PF10620.9 gi|332797764|ref|YP_004459264.1| - 0.26 11.0 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl-dephospho-CoA transferase MdcG QRPTase_C PF01729.19 gi|332797765|ref|YP_004459265.1| - 1.1e-61 207.6 0.5 1.3e-61 207.3 0.5 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|332797765|ref|YP_004459265.1| - 3.7e-17 62.2 0.0 1.1e-16 60.6 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain FMN_dh PF01070.18 gi|332797765|ref|YP_004459265.1| - 0.09 11.8 0.2 5 6.1 0.0 2.0 1 1 1 2 2 2 0 FMN-dependent dehydrogenase GATase PF00117.28 gi|332797766|ref|YP_004459266.1| - 1.7e-37 129.0 0.1 2.1e-37 128.8 0.1 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|332797766|ref|YP_004459266.1| - 9.4e-12 45.1 1.0 1e-10 41.8 1.0 2.3 1 1 1 2 2 2 1 Peptidase C26 SNO PF01174.19 gi|332797766|ref|YP_004459266.1| - 0.028 14.3 0.1 0.39 10.5 0.1 2.1 1 1 0 1 1 1 0 SNO glutamine amidotransferase family DUF3834 PF12916.7 gi|332797767|ref|YP_004459267.1| - 8.4e-57 191.7 0.0 9.4e-57 191.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) TENA_THI-4 PF03070.16 gi|332797768|ref|YP_004459268.1| - 1.6e-43 149.0 1.1 1.8e-43 148.8 1.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Cas_NE0113 PF09623.10 gi|332797769|ref|YP_004459269.1| - 0.00033 20.4 0.1 0.00064 19.5 0.1 1.6 1 1 0 1 1 1 1 CRISPR-associated protein NE0113 (Cas_NE0113) Cas_Cas02710 PF09670.10 gi|332797769|ref|YP_004459269.1| - 0.0086 14.9 0.2 0.015 14.1 0.2 1.3 1 1 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF2179 PF10035.9 gi|332797769|ref|YP_004459269.1| - 0.12 12.1 0.7 0.34 10.7 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2179) AlaDh_PNT_C PF01262.21 gi|332797770|ref|YP_004459270.1| - 0.11 11.8 0.0 0.11 11.7 0.0 1.1 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain PIN PF01850.21 gi|332797771|ref|YP_004459271.1| - 4.8e-08 33.5 1.2 6.1e-08 33.2 1.2 1.2 1 0 0 1 1 1 1 PIN domain ProQ_C PF17516.2 gi|332797771|ref|YP_004459271.1| - 0.012 15.0 1.5 3.3 7.2 0.1 2.3 2 0 0 2 2 2 0 ProQ C-terminal domain Gemini_V2 PF01524.17 gi|332797771|ref|YP_004459271.1| - 0.22 11.7 0.9 28 5.0 0.3 2.5 2 1 0 2 2 2 0 Geminivirus V2 protein ATPase PF06745.13 gi|332797772|ref|YP_004459272.1| - 3.5e-55 186.9 0.2 4.3e-55 186.6 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|332797772|ref|YP_004459272.1| - 2e-06 27.5 0.0 3.2e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|332797772|ref|YP_004459272.1| - 1.8e-05 23.6 0.5 0.00033 19.4 0.3 2.4 1 1 1 2 2 2 1 GvpD gas vesicle protein MEDS PF14417.6 gi|332797772|ref|YP_004459272.1| - 9.3e-05 22.3 0.0 0.00015 21.6 0.0 1.3 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|332797772|ref|YP_004459272.1| - 0.00013 21.3 0.1 0.00022 20.6 0.1 1.5 1 1 0 1 1 1 1 Rad51 DnaB_C PF03796.15 gi|332797772|ref|YP_004459272.1| - 0.00044 19.7 0.0 0.0037 16.6 0.0 2.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|332797772|ref|YP_004459272.1| - 0.00054 19.7 0.0 0.0016 18.2 0.0 1.6 1 1 1 2 2 2 1 IstB-like ATP binding protein RecA PF00154.21 gi|332797772|ref|YP_004459272.1| - 0.0015 18.1 0.0 0.0024 17.4 0.0 1.3 1 0 0 1 1 1 1 recA bacterial DNA recombination protein RNA_helicase PF00910.22 gi|332797772|ref|YP_004459272.1| - 0.029 14.8 0.0 0.079 13.4 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|332797772|ref|YP_004459272.1| - 0.11 12.6 1.0 0.39 10.7 0.2 2.3 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|332797772|ref|YP_004459272.1| - 0.12 12.6 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain DSPc PF00782.20 gi|332797773|ref|YP_004459273.1| - 1.3e-11 44.5 0.0 1.7e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|332797773|ref|YP_004459273.1| - 2.1e-08 34.0 0.0 3.7e-08 33.2 0.0 1.3 1 1 0 1 1 1 1 Protein-tyrosine phosphatase CDKN3 PF05706.12 gi|332797773|ref|YP_004459273.1| - 1.6e-06 27.9 0.0 2.1e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Cyclin-dependent kinase inhibitor 3 (CDKN3) PTPlike_phytase PF14566.6 gi|332797773|ref|YP_004459273.1| - 0.00063 19.9 0.0 0.0009 19.4 0.0 1.4 1 0 0 1 1 1 1 Inositol hexakisphosphate Y_phosphatase3 PF13350.6 gi|332797773|ref|YP_004459273.1| - 0.02 14.9 0.0 0.062 13.3 0.0 1.8 1 1 0 1 1 1 0 Tyrosine phosphatase family Endonuclease_5 PF04493.14 gi|332797774|ref|YP_004459274.1| - 1.1e-33 116.5 0.1 1.7e-33 116.0 0.1 1.2 1 0 0 1 1 1 1 Endonuclease V NTP_transferase PF00483.23 gi|332797774|ref|YP_004459274.1| - 0.11 12.0 0.1 0.18 11.4 0.1 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Isochorismatase PF00857.20 gi|332797775|ref|YP_004459275.1| - 1.1e-41 142.9 0.0 1.3e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family DHHA1 PF02272.19 gi|332797776|ref|YP_004459276.1| - 1.9e-09 38.1 0.0 5e-09 36.7 0.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|332797776|ref|YP_004459276.1| - 0.015 15.5 0.1 0.031 14.5 0.1 1.5 1 0 0 1 1 1 0 DHH family ComA PF02679.15 gi|332797776|ref|YP_004459276.1| - 0.092 12.2 0.0 0.23 10.9 0.0 1.6 2 0 0 2 2 2 0 (2R)-phospho-3-sulfolactate synthase (ComA) AhpC-TSA PF00578.21 gi|332797777|ref|YP_004459277.1| - 2.7e-31 108.1 0.0 3.7e-31 107.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|332797777|ref|YP_004459277.1| - 5.9e-13 48.8 0.0 8.1e-13 48.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin 1-cysPrx_C PF10417.9 gi|332797777|ref|YP_004459277.1| - 2.2e-08 33.8 0.1 5.6e-08 32.5 0.1 1.7 2 0 0 2 2 2 1 C-terminal domain of 1-Cys peroxiredoxin AhpC-TSA_2 PF13911.6 gi|332797777|ref|YP_004459277.1| - 0.0027 17.8 0.0 0.012 15.8 0.0 1.9 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Metallophos_2 PF12850.7 gi|332797778|ref|YP_004459278.1| - 1.9e-12 47.7 0.0 4.9e-12 46.3 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|332797778|ref|YP_004459278.1| - 3.1e-11 44.2 0.0 3.8e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF763 PF05559.11 gi|332797779|ref|YP_004459279.1| - 2e-122 408.3 0.0 2.3e-122 408.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF763) Citrate_synt PF00285.21 gi|332797780|ref|YP_004459280.1| - 1.6e-133 445.3 0.0 1.8e-133 445.1 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain PhoU_div PF01865.16 gi|332797781|ref|YP_004459281.1| - 5.3e-13 48.8 7.8 6.4e-13 48.5 7.8 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF47 IZUMO PF15005.6 gi|332797781|ref|YP_004459281.1| - 0.23 12.0 2.2 1.5 9.4 0.2 2.7 2 2 0 3 3 3 0 Izumo sperm-egg fusion, Ig domain-associated PHO4 PF01384.20 gi|332797782|ref|YP_004459282.1| - 1.6e-29 103.0 38.5 2.1e-24 86.2 24.9 2.8 1 1 1 2 2 2 2 Phosphate transporter family RHH_1 PF01402.21 gi|332797783|ref|YP_004459283.1| - 1e-10 41.1 0.2 1.3e-10 40.8 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|332797783|ref|YP_004459283.1| - 0.039 14.1 0.0 0.045 13.9 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family HMA PF00403.26 gi|332797783|ref|YP_004459283.1| - 0.067 13.6 0.3 0.1 13.1 0.3 1.3 1 0 0 1 1 1 0 Heavy-metal-associated domain DEAD PF00270.29 gi|332797784|ref|YP_004459284.1| - 6.9e-26 91.1 0.0 7e-25 87.8 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|332797784|ref|YP_004459284.1| - 8.2e-14 52.0 0.0 2.2e-13 50.6 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|332797784|ref|YP_004459284.1| - 1.7e-11 44.5 0.0 5.3e-10 39.6 0.0 3.1 2 1 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|332797784|ref|YP_004459284.1| - 4.3e-06 27.2 1.0 1.6e-05 25.4 0.4 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|332797784|ref|YP_004459284.1| - 0.00076 19.3 0.8 0.0023 17.7 0.0 2.3 3 0 0 3 3 3 1 Fingers domain of DNA polymerase lambda ATPase PF06745.13 gi|332797784|ref|YP_004459284.1| - 0.003 17.0 0.0 0.0089 15.4 0.0 1.8 1 0 0 1 1 1 1 KaiC AAA_30 PF13604.6 gi|332797784|ref|YP_004459284.1| - 0.031 14.0 0.0 0.21 11.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain Enolase_like_N PF18374.1 gi|332797784|ref|YP_004459284.1| - 0.15 11.5 0.0 0.39 10.1 0.0 1.7 1 0 0 1 1 1 0 Enolase N-terminal domain-like AAA_19 PF13245.6 gi|332797784|ref|YP_004459284.1| - 0.17 12.3 0.0 0.48 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain Carboxyl_trans PF01039.22 gi|332797786|ref|YP_004459286.1| - 2.8e-184 613.4 3.1 3.2e-184 613.2 3.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|332797786|ref|YP_004459286.1| - 0.0053 16.3 0.2 0.0053 16.3 0.2 2.2 2 1 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) NUC130_3NT PF08158.12 gi|332797786|ref|YP_004459286.1| - 0.24 11.7 0.2 0.56 10.6 0.2 1.5 1 0 0 1 1 1 0 NUC130/3NT domain Biotin_lipoyl PF00364.22 gi|332797787|ref|YP_004459287.1| - 1.3e-19 69.8 5.6 9.8e-19 67.0 3.0 3.0 4 0 0 4 4 4 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|332797787|ref|YP_004459287.1| - 8.2e-19 67.2 7.7 3.7e-09 36.3 2.4 3.1 2 1 1 3 3 3 2 Biotin-lipoyl like HlyD_D23 PF16576.5 gi|332797787|ref|YP_004459287.1| - 5.1e-08 32.4 0.9 0.0064 15.7 0.2 2.5 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion HlyD_3 PF13437.6 gi|332797787|ref|YP_004459287.1| - 7.1e-08 33.1 3.5 0.0013 19.4 0.1 2.8 2 2 1 3 3 3 2 HlyD family secretion protein PTS_EIIA_1 PF00358.20 gi|332797787|ref|YP_004459287.1| - 0.00014 21.6 2.1 0.07 12.9 0.1 3.5 1 1 2 3 3 3 2 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RnfC_N PF13375.6 gi|332797787|ref|YP_004459287.1| - 0.00016 21.5 3.0 0.00079 19.3 3.0 2.1 1 1 0 1 1 1 1 RnfC Barrel sandwich hybrid domain NQRA PF05896.11 gi|332797787|ref|YP_004459287.1| - 0.00019 21.0 1.1 0.00047 19.7 0.3 1.9 1 1 1 2 2 2 1 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GCV_H PF01597.19 gi|332797787|ref|YP_004459287.1| - 0.00068 19.5 1.2 0.0012 18.8 0.6 1.8 2 0 0 2 2 2 1 Glycine cleavage H-protein PYNP_C PF07831.13 gi|332797787|ref|YP_004459287.1| - 0.0013 18.3 1.3 0.33 10.6 0.0 2.5 1 1 1 2 2 2 2 Pyrimidine nucleoside phosphorylase C-terminal domain DUF2118 PF09891.9 gi|332797787|ref|YP_004459287.1| - 0.0024 17.9 3.4 0.1 12.5 3.4 3.0 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2118) Peptidase_M23 PF01551.22 gi|332797787|ref|YP_004459287.1| - 0.005 17.0 2.4 0.38 11.0 2.3 2.9 1 1 0 1 1 1 1 Peptidase family M23 QRPTase_N PF02749.16 gi|332797787|ref|YP_004459287.1| - 0.005 16.9 0.3 0.65 10.1 0.0 2.9 3 1 1 4 4 4 1 Quinolinate phosphoribosyl transferase, N-terminal domain NdhO PF11910.8 gi|332797787|ref|YP_004459287.1| - 0.04 14.1 0.4 0.11 12.6 0.2 1.9 2 0 0 2 2 2 0 Cyanobacterial and plant NDH-1 subunit O YqfD PF06898.11 gi|332797787|ref|YP_004459287.1| - 0.063 12.1 6.2 0.89 8.3 0.2 2.5 2 1 1 3 3 3 0 Putative stage IV sporulation protein YqfD ATP-synt_10 PF05176.14 gi|332797787|ref|YP_004459287.1| - 0.1 11.9 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 ATP10 protein CPSase_L_D2 PF02786.17 gi|332797788|ref|YP_004459288.1| - 1.9e-60 204.0 0.0 2.9e-60 203.4 0.0 1.3 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|332797788|ref|YP_004459288.1| - 6.8e-46 155.4 0.4 1.3e-45 154.5 0.4 1.5 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|332797788|ref|YP_004459288.1| - 1.3e-36 125.0 0.0 2.4e-36 124.1 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|332797788|ref|YP_004459288.1| - 5.8e-07 29.2 0.1 3.5e-06 26.7 0.0 2.0 2 0 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|332797788|ref|YP_004459288.1| - 0.0002 20.9 0.1 0.00075 19.1 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|332797788|ref|YP_004459288.1| - 0.0064 16.0 0.0 0.036 13.5 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain Oxidored_nitro PF00148.19 gi|332797788|ref|YP_004459288.1| - 0.075 11.8 1.0 0.12 11.1 0.6 1.4 1 1 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase USP8_dimer PF08969.11 gi|332797788|ref|YP_004459288.1| - 1.3 9.2 4.6 1.1 9.5 0.1 2.6 3 0 0 3 3 3 0 USP8 dimerisation domain BPD_transp_1 PF00528.22 gi|332797789|ref|YP_004459289.1| - 1.2e-22 80.5 41.8 3.4e-14 53.0 14.0 2.9 2 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|332797790|ref|YP_004459290.1| - 4.2e-28 98.6 0.0 6.6e-28 97.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797790|ref|YP_004459290.1| - 6.2e-07 29.5 0.8 0.005 16.7 0.3 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|332797790|ref|YP_004459290.1| - 0.00022 21.5 0.1 0.0026 18.0 0.1 2.5 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|332797790|ref|YP_004459290.1| - 0.00038 20.0 0.1 0.56 9.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|332797790|ref|YP_004459290.1| - 0.00059 20.3 0.0 0.001 19.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|332797790|ref|YP_004459290.1| - 0.00069 19.6 0.0 0.0012 18.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_15 PF13175.6 gi|332797790|ref|YP_004459290.1| - 0.0023 17.7 0.0 0.0055 16.5 0.0 1.6 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|332797790|ref|YP_004459290.1| - 0.0028 17.3 0.0 0.0061 16.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|332797790|ref|YP_004459290.1| - 0.0058 17.2 0.3 0.012 16.1 0.3 1.4 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|332797790|ref|YP_004459290.1| - 0.011 16.2 0.1 0.067 13.6 0.1 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|332797790|ref|YP_004459290.1| - 0.019 15.0 0.0 0.059 13.5 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_24 PF13479.6 gi|332797790|ref|YP_004459290.1| - 0.041 13.6 0.0 0.065 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|332797790|ref|YP_004459290.1| - 0.051 13.8 0.1 0.19 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|332797790|ref|YP_004459290.1| - 0.076 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain NACHT PF05729.12 gi|332797790|ref|YP_004459290.1| - 0.14 12.1 0.2 0.32 10.9 0.2 1.6 1 0 0 1 1 1 0 NACHT domain 4HBT PF03061.22 gi|332797791|ref|YP_004459291.1| - 7.6e-06 26.2 0.0 9.6e-06 25.9 0.0 1.1 1 0 0 1 1 1 1 Thioesterase superfamily TLP-20 PF06088.11 gi|332797791|ref|YP_004459291.1| - 0.083 12.8 0.2 0.92 9.4 0.1 2.0 2 0 0 2 2 2 0 Nucleopolyhedrovirus telokin-like protein-20 (TLP20) Helicase_C PF00271.31 gi|332797792|ref|YP_004459292.1| - 1.6e-16 60.6 0.0 4.1e-16 59.3 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|332797792|ref|YP_004459292.1| - 3.3e-11 43.2 0.0 1.3e-07 31.5 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|332797792|ref|YP_004459292.1| - 0.00034 20.7 0.0 0.0029 17.6 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HEM4 PF02602.15 gi|332797792|ref|YP_004459292.1| - 0.0069 15.8 0.0 0.015 14.6 0.0 1.5 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD AAA_22 PF13401.6 gi|332797792|ref|YP_004459292.1| - 0.12 12.7 0.0 0.32 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain DrsE PF02635.15 gi|332797793|ref|YP_004459293.1| - 3.8e-09 36.9 0.1 4.3e-09 36.7 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family tRNA-synt_1d PF00750.19 gi|332797793|ref|YP_004459293.1| - 0.00028 19.9 0.0 0.00031 19.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (R) Mistic PF11458.8 gi|332797793|ref|YP_004459293.1| - 0.061 13.3 0.1 0.088 12.8 0.1 1.3 1 0 0 1 1 1 0 Membrane-integrating protein Mistic E1-E2_ATPase PF00122.20 gi|332797794|ref|YP_004459294.1| - 2.1e-52 177.2 3.5 2.1e-52 177.2 3.5 3.2 4 0 0 4 4 4 1 E1-E2 ATPase Hydrolase PF00702.26 gi|332797794|ref|YP_004459294.1| - 1.5e-21 77.6 0.1 2.8e-21 76.8 0.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_N PF00690.26 gi|332797794|ref|YP_004459294.1| - 1.8e-17 62.8 0.0 4.9e-17 61.4 0.0 1.8 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus Hydrolase_3 PF08282.12 gi|332797794|ref|YP_004459294.1| - 5.7e-06 26.3 0.6 1.6e-05 24.8 0.1 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Cation_ATPase PF13246.6 gi|332797794|ref|YP_004459294.1| - 0.0008 19.5 0.0 0.0032 17.5 0.0 2.0 2 0 0 2 2 2 1 Cation transport ATPase (P-type) FMP23 PF17315.2 gi|332797794|ref|YP_004459294.1| - 0.097 12.8 0.2 0.3 11.3 0.2 1.8 1 0 0 1 1 1 0 Found in mitochondrial proteome TPR_12 PF13424.6 gi|332797795|ref|YP_004459295.1| - 5.9e-14 52.1 7.2 0.001 19.3 0.0 5.3 3 2 2 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|332797795|ref|YP_004459295.1| - 1.7e-10 41.3 0.3 1.3e-08 35.3 0.0 3.4 2 1 1 3 3 3 1 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|332797795|ref|YP_004459295.1| - 3.2e-09 36.9 13.0 2.5e-07 30.8 0.1 4.7 3 2 2 5 5 5 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_19 PF14559.6 gi|332797795|ref|YP_004459295.1| - 1.1e-06 29.1 1.0 0.006 17.1 0.0 5.6 2 2 5 7 7 7 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|332797795|ref|YP_004459295.1| - 3.5e-05 24.3 5.2 0.47 11.4 0.0 5.9 4 2 1 5 5 5 1 Tetratricopeptide repeat TPR_6 PF13174.6 gi|332797795|ref|YP_004459295.1| - 0.00016 22.1 3.7 12 6.7 0.0 6.1 6 0 0 6 6 6 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|332797795|ref|YP_004459295.1| - 0.00037 20.4 17.0 0.0048 16.9 0.1 6.8 8 1 0 8 8 8 2 Tetratricopeptide repeat TPR_11 PF13414.6 gi|332797795|ref|YP_004459295.1| - 0.00044 19.9 0.7 0.00044 19.9 0.7 3.8 4 1 0 4 4 4 1 TPR repeat ERAP1_C PF11838.8 gi|332797795|ref|YP_004459295.1| - 0.00087 18.9 1.5 0.019 14.6 1.5 2.4 1 1 1 2 2 2 1 ERAP1-like C-terminal domain SPO22 PF08631.10 gi|332797795|ref|YP_004459295.1| - 0.0013 18.3 9.6 0.015 14.8 0.4 3.4 1 1 3 4 4 4 3 Meiosis protein SPO22/ZIP4 like TPR_8 PF13181.6 gi|332797795|ref|YP_004459295.1| - 0.0025 17.9 27.7 0.18 12.1 0.2 7.9 9 0 0 9 9 7 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|332797795|ref|YP_004459295.1| - 0.012 15.6 6.3 0.45 10.7 0.1 5.6 6 1 0 6 6 6 0 Tetratricopeptide repeat TPR_1 PF00515.28 gi|332797795|ref|YP_004459295.1| - 0.015 15.1 0.3 0.015 15.1 0.3 6.3 7 0 0 7 7 6 0 Tetratricopeptide repeat ANAPC5 PF12862.7 gi|332797795|ref|YP_004459295.1| - 0.022 14.8 0.2 11 6.1 0.0 3.4 3 1 1 4 4 4 0 Anaphase-promoting complex subunit 5 Type_III_YscG PF09477.10 gi|332797795|ref|YP_004459295.1| - 0.044 13.8 0.2 0.73 9.9 0.1 2.7 1 1 2 3 3 3 0 Bacterial type II secretion system chaperone protein (type_III_yscG) TPR_MalT PF17874.1 gi|332797795|ref|YP_004459295.1| - 0.053 12.9 0.2 16 4.7 0.0 3.1 1 1 0 3 3 3 0 MalT-like TPR region TPR_3 PF07720.12 gi|332797795|ref|YP_004459295.1| - 0.095 12.7 1.8 1.6 8.8 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat TPR_17 PF13431.6 gi|332797795|ref|YP_004459295.1| - 0.16 12.4 3.1 29 5.3 0.0 4.2 4 1 1 5 5 4 0 Tetratricopeptide repeat PepSY PF03413.19 gi|332797795|ref|YP_004459295.1| - 0.21 12.2 9.0 21 5.8 0.5 4.2 3 1 1 4 4 4 0 Peptidase propeptide and YPEB domain TPR_10 PF13374.6 gi|332797795|ref|YP_004459295.1| - 0.87 9.5 14.6 11 6.0 0.1 6.0 8 0 0 8 8 7 0 Tetratricopeptide repeat TPR_20 PF14561.6 gi|332797795|ref|YP_004459295.1| - 1.5 9.2 5.8 0.81 10.1 0.3 3.1 3 1 0 3 3 3 0 Tetratricopeptide repeat dUTPase PF00692.19 gi|332797796|ref|YP_004459296.1| - 8.2e-15 54.6 0.0 1.6e-14 53.7 0.0 1.5 1 1 0 1 1 1 1 dUTPase DCD PF06559.11 gi|332797796|ref|YP_004459296.1| - 0.00015 20.7 0.0 0.00045 19.1 0.0 1.8 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Esterase PF00756.20 gi|332797798|ref|YP_004459298.1| - 3.3e-15 56.4 0.0 1.7e-08 34.4 0.0 2.0 2 0 0 2 2 2 2 Putative esterase Late_protein_L1 PF00500.18 gi|332797798|ref|YP_004459298.1| - 0.012 14.5 0.1 0.11 11.3 0.0 1.9 2 0 0 2 2 2 0 L1 (late) protein Hydrolase_4 PF12146.8 gi|332797798|ref|YP_004459298.1| - 0.026 13.8 0.0 0.055 12.7 0.0 1.4 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Chlorophyllase2 PF12740.7 gi|332797798|ref|YP_004459298.1| - 0.026 13.4 0.0 0.037 12.9 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase enzyme DUF915 PF06028.11 gi|332797798|ref|YP_004459298.1| - 0.036 13.4 0.0 0.1 11.9 0.0 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF915) Chlorophyllase PF07224.11 gi|332797798|ref|YP_004459298.1| - 0.14 11.1 0.0 0.19 10.7 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase DUF2281 PF10047.9 gi|332797800|ref|YP_004459300.1| - 0.037 14.7 0.8 1.3 9.7 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2281) 7TMR-DISM_7TM PF07695.11 gi|332797802|ref|YP_004459302.1| - 0.074 12.9 12.9 0.044 13.7 11.2 1.4 1 1 0 1 1 1 0 7TM diverse intracellular signalling DUF2070 PF09843.9 gi|332797802|ref|YP_004459302.1| - 1.5 7.0 15.2 1.6 6.9 15.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Phage_integr_3 PF16795.5 gi|332797806|ref|YP_004459306.1| - 6.9e-53 178.8 0.8 1.2e-52 178.1 0.8 1.4 1 0 0 1 1 1 1 Archaeal phage integrase Phage_integrase PF00589.22 gi|332797806|ref|YP_004459306.1| - 0.0018 18.1 0.0 1.5 8.6 0.0 2.3 1 1 1 2 2 2 2 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|332797806|ref|YP_004459306.1| - 0.026 14.8 0.9 0.026 14.8 0.9 2.0 2 0 0 2 2 2 0 Phage integrase SAM-like domain Mlp PF03304.13 gi|332797806|ref|YP_004459306.1| - 0.028 14.6 2.4 0.054 13.7 2.4 1.4 1 0 0 1 1 1 0 Mlp lipoprotein family zf-C2H2_4 PF13894.6 gi|332797807|ref|YP_004459307.1| - 4.4e-08 33.3 1.6 0.0021 18.8 0.3 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|332797807|ref|YP_004459307.1| - 9.6e-08 32.1 2.1 0.00021 21.6 0.7 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|332797807|ref|YP_004459307.1| - 1e-06 28.6 0.1 0.009 16.0 0.0 2.3 2 0 0 2 2 2 2 C2H2-type zinc finger zf-Di19 PF05605.12 gi|332797807|ref|YP_004459307.1| - 7.7e-06 26.1 0.4 0.021 15.1 0.1 2.2 1 1 1 2 2 2 2 Drought induced 19 protein (Di19), zinc-binding zf-BED PF02892.15 gi|332797807|ref|YP_004459307.1| - 0.0004 20.3 0.8 0.0039 17.2 0.3 2.3 2 0 0 2 2 2 1 BED zinc finger zf-C2H2_2 PF12756.7 gi|332797807|ref|YP_004459307.1| - 0.00069 19.9 0.1 0.55 10.6 0.1 2.2 1 1 1 2 2 2 2 C2H2 type zinc-finger (2 copies) Vps36-NZF-N PF16988.5 gi|332797807|ref|YP_004459307.1| - 0.00095 18.5 0.0 0.0018 17.6 0.0 1.4 1 0 0 1 1 1 1 Vacuolar protein sorting 36 NZF-N zinc-finger domain zf-C2H2_9 PF16293.5 gi|332797807|ref|YP_004459307.1| - 0.0073 16.1 0.2 0.21 11.5 0.1 2.3 1 1 1 2 2 2 1 C2H2 type zinc-finger (1 copy) Prok-RING_1 PF14446.6 gi|332797807|ref|YP_004459307.1| - 0.0094 15.9 2.8 0.17 11.8 0.3 2.2 2 0 0 2 2 2 1 Prokaryotic RING finger family 1 HNH PF01844.23 gi|332797807|ref|YP_004459307.1| - 0.0099 16.0 0.5 0.24 11.6 0.1 2.2 2 0 0 2 2 2 1 HNH endonuclease FOXP-CC PF16159.5 gi|332797807|ref|YP_004459307.1| - 0.01 16.5 0.4 3.9 8.2 0.1 2.3 1 1 1 2 2 2 0 FOXP coiled-coil domain FYVE PF01363.21 gi|332797807|ref|YP_004459307.1| - 0.012 15.7 0.1 0.018 15.2 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger Cript PF10235.9 gi|332797807|ref|YP_004459307.1| - 0.026 15.1 0.1 0.039 14.5 0.1 1.3 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT DUF629 PF04780.12 gi|332797807|ref|YP_004459307.1| - 0.027 13.0 0.3 0.94 7.9 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF629) DZR PF12773.7 gi|332797807|ref|YP_004459307.1| - 0.032 14.3 0.1 0.052 13.6 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon zf_ZIC PF18366.1 gi|332797807|ref|YP_004459307.1| - 0.059 13.5 0.5 0.11 12.6 0.3 1.5 1 1 0 1 1 1 0 Zic proteins zinc finger domain Zn-ribbon_8 PF09723.10 gi|332797807|ref|YP_004459307.1| - 0.063 13.4 1.4 0.11 12.7 1.4 1.4 1 0 0 1 1 1 0 Zinc ribbon domain zf-MYST PF17772.1 gi|332797807|ref|YP_004459307.1| - 0.067 12.8 2.2 0.26 10.9 0.3 2.2 2 0 0 2 2 2 0 MYST family zinc finger domain DUF2256 PF10013.9 gi|332797807|ref|YP_004459307.1| - 0.069 13.3 2.4 0.97 9.6 0.2 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2256) zf-C2HC_2 PF13913.6 gi|332797807|ref|YP_004459307.1| - 0.078 12.9 1.9 0.21 11.5 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.12 gi|332797807|ref|YP_004459307.1| - 0.13 11.8 1.8 0.24 10.9 1.8 1.5 1 1 0 1 1 1 0 TFIIB zinc-binding Zn-C2H2_12 PF18112.1 gi|332797807|ref|YP_004459307.1| - 0.15 12.6 2.0 18 5.9 0.0 2.6 2 0 0 2 2 2 0 Autophagy receptor zinc finger-C2H2 domain zf-CHCC PF10276.9 gi|332797807|ref|YP_004459307.1| - 0.15 12.1 0.3 0.15 12.1 0.3 1.7 2 0 0 2 2 2 0 Zinc-finger domain zf-met PF12874.7 gi|332797807|ref|YP_004459307.1| - 0.16 12.4 2.1 5.2 7.6 0.0 2.6 2 1 0 2 2 2 0 Zinc-finger of C2H2 type PyrI_C PF02748.15 gi|332797807|ref|YP_004459307.1| - 0.17 11.8 2.3 0.3 11.0 2.1 1.5 1 1 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain HNH_5 PF14279.6 gi|332797807|ref|YP_004459307.1| - 0.17 11.8 1.8 0.32 10.9 0.3 2.0 2 0 0 2 2 2 0 HNH endonuclease zf-Sec23_Sec24 PF04810.15 gi|332797807|ref|YP_004459307.1| - 0.31 11.1 3.7 0.3 11.2 0.6 2.2 1 1 1 2 2 2 0 Sec23/Sec24 zinc finger zf-H2C2_2 PF13465.6 gi|332797807|ref|YP_004459307.1| - 1.4 9.5 6.0 0.75 10.3 0.6 2.8 3 0 0 3 3 3 0 Zinc-finger double domain DUF815 PF05673.13 gi|332797808|ref|YP_004459308.1| - 0.00028 20.1 0.1 0.00076 18.7 0.1 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) MCM PF00493.23 gi|332797808|ref|YP_004459308.1| - 0.0016 17.6 0.0 0.0042 16.2 0.0 1.7 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|332797808|ref|YP_004459308.1| - 0.012 16.1 1.7 0.024 15.1 0.1 2.4 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|332797808|ref|YP_004459308.1| - 0.02 14.9 0.2 0.092 12.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MarR_2 PF12802.7 gi|332797808|ref|YP_004459308.1| - 0.028 14.3 0.0 0.097 12.6 0.0 2.0 1 0 0 1 1 1 0 MarR family AAA_7 PF12775.7 gi|332797808|ref|YP_004459308.1| - 0.038 13.5 2.2 0.17 11.4 0.1 3.0 4 0 0 4 4 4 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|332797808|ref|YP_004459308.1| - 0.052 14.1 0.0 0.052 14.1 0.0 2.5 2 1 0 2 2 1 0 ABC transporter AAA_16 PF13191.6 gi|332797808|ref|YP_004459308.1| - 0.056 13.8 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 AAA ATPase domain DUF4423 PF14394.6 gi|332797808|ref|YP_004459308.1| - 0.069 12.8 1.3 8.3 6.1 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) AAA_22 PF13401.6 gi|332797808|ref|YP_004459308.1| - 0.088 13.1 0.0 0.28 11.5 0.0 1.8 1 0 0 1 1 1 0 AAA domain SgrR_N PF12793.7 gi|332797808|ref|YP_004459308.1| - 0.11 12.7 0.0 0.38 11.0 0.0 1.9 2 0 0 2 2 1 0 Sugar transport-related sRNA regulator N-term AAA_19 PF13245.6 gi|332797808|ref|YP_004459308.1| - 0.12 12.7 0.0 0.41 11.0 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|332797808|ref|YP_004459308.1| - 0.15 12.2 0.1 0.15 12.2 0.1 3.6 3 0 0 3 3 3 0 Helicase HerA, central domain DUF2087 PF09860.9 gi|332797808|ref|YP_004459308.1| - 0.16 12.2 1.4 6.7 6.9 0.1 3.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2087) SelB-wing_2 PF09106.11 gi|332797808|ref|YP_004459308.1| - 0.18 12.0 0.3 2.7 8.3 0.1 2.5 2 0 0 2 2 2 0 Elongation factor SelB, winged helix MarR PF01047.22 gi|332797808|ref|YP_004459308.1| - 0.19 11.7 2.8 2.4 8.2 0.1 3.3 3 0 0 3 3 3 0 MarR family HTH_Crp_2 PF13545.6 gi|332797808|ref|YP_004459308.1| - 0.21 11.6 0.6 2.8 8.0 0.0 2.9 3 0 0 3 3 3 0 Crp-like helix-turn-helix domain RPA_C PF08784.11 gi|332797808|ref|YP_004459308.1| - 0.28 11.9 1.5 0.67 10.7 0.0 2.4 2 0 0 2 2 2 0 Replication protein A C terminal SSV1_ORF_D-335 PF07935.11 gi|332797809|ref|YP_004459309.1| - 2.6e-29 101.3 1.4 3.3e-29 101.0 1.4 1.1 1 0 0 1 1 1 1 ORF D-335-like protein eRF1_2 PF03464.15 gi|332797810|ref|YP_004459310.1| - 1.1e-43 148.7 0.0 2e-43 147.9 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|332797810|ref|YP_004459310.1| - 3.3e-19 69.4 3.3 6e-18 65.4 1.4 2.8 2 1 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|332797810|ref|YP_004459310.1| - 2.1e-15 57.2 0.0 6.7e-15 55.5 0.0 1.8 3 0 0 3 3 3 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|332797810|ref|YP_004459310.1| - 4.2e-14 53.0 0.0 8e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|332797810|ref|YP_004459310.1| - 0.00026 21.0 0.0 0.00046 20.2 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 1 Pribosyltran PF00156.27 gi|332797811|ref|YP_004459311.1| - 2e-17 63.1 0.0 3.3e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|332797811|ref|YP_004459311.1| - 0.0056 16.2 0.0 0.0075 15.7 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase XRN_M PF17846.1 gi|332797811|ref|YP_004459311.1| - 0.035 13.1 0.3 0.046 12.7 0.3 1.3 1 0 0 1 1 1 0 Xrn1 helical domain Exog_C PF18026.1 gi|332797811|ref|YP_004459311.1| - 0.38 10.8 1.9 13 5.9 0.2 2.5 2 0 0 2 2 2 0 Endo/exonuclease (EXOG) C-terminal domain PNP_UDP_1 PF01048.20 gi|332797812|ref|YP_004459312.1| - 5.4e-49 166.6 0.0 6.1e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily polyprenyl_synt PF00348.17 gi|332797814|ref|YP_004459314.1| - 6.1e-38 130.3 0.0 7.7e-38 130.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase RimK PF08443.11 gi|332797815|ref|YP_004459315.1| - 6.7e-32 110.6 0.0 7.8e-32 110.4 0.0 1.0 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|332797815|ref|YP_004459315.1| - 5.9e-11 42.1 0.0 7.4e-11 41.8 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_YheCD PF14398.6 gi|332797815|ref|YP_004459315.1| - 8.2e-08 31.8 0.0 0.0007 18.9 0.0 2.6 1 1 1 2 2 2 2 YheC/D like ATP-grasp ATP-grasp_3 PF02655.14 gi|332797815|ref|YP_004459315.1| - 7.3e-07 29.4 0.2 1.4e-06 28.4 0.2 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|332797815|ref|YP_004459315.1| - 2.4e-06 27.0 0.0 0.016 14.4 0.0 2.5 1 1 2 3 3 3 2 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.22 gi|332797815|ref|YP_004459315.1| - 0.045 13.3 0.0 0.06 12.9 0.0 1.2 1 0 0 1 1 1 0 ATP-grasp domain Ins134_P3_kin PF05770.11 gi|332797815|ref|YP_004459315.1| - 0.061 12.8 0.0 2.5 7.6 0.0 2.1 1 1 1 2 2 2 0 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|332797815|ref|YP_004459315.1| - 0.062 12.8 0.0 0.082 12.4 0.0 1.5 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus RIO1 PF01163.22 gi|332797815|ref|YP_004459315.1| - 0.071 12.7 0.1 0.13 11.9 0.1 1.4 1 0 0 1 1 1 0 RIO1 family AsnC_trans_reg PF01037.21 gi|332797816|ref|YP_004459316.1| - 6.2e-18 64.5 0.2 9.5e-18 63.9 0.2 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|332797816|ref|YP_004459316.1| - 1.1e-17 63.6 1.6 1.9e-17 62.8 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|332797816|ref|YP_004459316.1| - 7.7e-17 60.6 1.2 1.4e-16 59.8 1.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|332797816|ref|YP_004459316.1| - 2.1e-09 37.2 0.7 4.2e-09 36.2 0.1 1.8 2 0 0 2 2 2 1 HTH domain HTH_5 PF01022.20 gi|332797816|ref|YP_004459316.1| - 1.1e-05 25.1 0.7 1.9e-05 24.4 0.1 1.7 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332797816|ref|YP_004459316.1| - 4.1e-05 23.5 0.0 0.0001 22.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|332797816|ref|YP_004459316.1| - 0.0002 21.2 0.0 0.00042 20.1 0.0 1.5 1 0 0 1 1 1 1 MarR family NapD PF03927.13 gi|332797816|ref|YP_004459316.1| - 0.00041 20.3 0.0 0.00088 19.3 0.0 1.5 2 0 0 2 2 1 1 NapD protein AsnC_trans_reg2 PF17805.1 gi|332797816|ref|YP_004459316.1| - 0.00063 19.8 0.0 0.001 19.2 0.0 1.3 1 0 0 1 1 1 1 AsnC-like ligand binding domain ACT_4 PF13291.6 gi|332797816|ref|YP_004459316.1| - 0.00072 20.1 0.1 0.024 15.2 0.0 2.4 2 0 0 2 2 2 1 ACT domain HTH_Mga PF08280.11 gi|332797816|ref|YP_004459316.1| - 0.0011 18.9 0.0 0.0024 17.8 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.22 gi|332797816|ref|YP_004459316.1| - 0.0013 18.6 0.1 0.0047 16.8 0.2 1.8 2 0 0 2 2 1 1 MarR family HTH_34 PF13601.6 gi|332797816|ref|YP_004459316.1| - 0.0029 17.7 0.0 0.0054 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|332797816|ref|YP_004459316.1| - 0.0041 17.1 0.2 0.011 15.7 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_1 PF00126.27 gi|332797816|ref|YP_004459316.1| - 0.0041 17.0 0.1 0.007 16.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_DeoR PF08220.12 gi|332797816|ref|YP_004459316.1| - 0.0051 16.5 0.3 0.019 14.7 0.2 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|332797816|ref|YP_004459316.1| - 0.0057 17.1 0.1 0.023 15.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|332797816|ref|YP_004459316.1| - 0.006 16.1 0.2 0.021 14.4 0.2 1.9 1 0 0 1 1 1 1 Sigma-70, region 4 Fe_dep_repress PF01325.19 gi|332797816|ref|YP_004459316.1| - 0.0098 16.1 0.0 0.026 14.7 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain PCI PF01399.27 gi|332797816|ref|YP_004459316.1| - 0.012 16.1 0.2 0.032 14.8 0.1 1.7 2 1 0 2 2 2 0 PCI domain HTH_Tnp_ISL3 PF13542.6 gi|332797816|ref|YP_004459316.1| - 0.015 14.7 0.1 0.022 14.1 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|332797816|ref|YP_004459316.1| - 0.019 14.7 0.1 0.041 13.7 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|332797816|ref|YP_004459316.1| - 0.02 14.7 0.3 0.042 13.6 0.3 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RuvB_C PF05491.13 gi|332797816|ref|YP_004459316.1| - 0.024 14.5 0.0 0.058 13.3 0.0 1.6 2 0 0 2 2 1 0 RuvB C-terminal winged helix domain HTH_IclR PF09339.10 gi|332797816|ref|YP_004459316.1| - 0.03 14.1 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|332797816|ref|YP_004459316.1| - 0.042 13.8 0.1 0.075 13.0 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|332797816|ref|YP_004459316.1| - 0.056 13.8 0.1 0.16 12.3 0.1 1.8 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.6 gi|332797816|ref|YP_004459316.1| - 0.061 13.3 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix TrmB PF01978.19 gi|332797816|ref|YP_004459316.1| - 0.062 13.2 0.7 1.3 8.9 0.0 2.8 2 1 1 3 3 3 0 Sugar-specific transcriptional regulator TrmB Phage_rep_O PF04492.13 gi|332797816|ref|YP_004459316.1| - 0.066 13.8 0.1 0.16 12.6 0.1 1.7 1 1 1 2 2 2 0 Bacteriophage replication protein O HTH_50 PF18024.1 gi|332797816|ref|YP_004459316.1| - 0.067 12.8 0.2 0.19 11.4 0.2 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|332797816|ref|YP_004459316.1| - 0.084 12.7 0.2 0.46 10.3 0.1 2.3 3 0 0 3 3 3 0 HTH DNA binding domain Mga PF05043.13 gi|332797816|ref|YP_004459316.1| - 0.091 13.4 0.8 0.23 12.1 0.2 1.8 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_psq PF05225.16 gi|332797816|ref|YP_004459316.1| - 0.15 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 helix-turn-helix, Psq domain DAO PF01266.24 gi|332797817|ref|YP_004459317.1| - 1.4e-06 28.1 0.1 0.02 14.5 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|332797817|ref|YP_004459317.1| - 5.2e-06 25.9 0.0 9.9e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|332797817|ref|YP_004459317.1| - 3.2e-05 24.1 0.2 6.2e-05 23.2 0.2 1.4 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|332797817|ref|YP_004459317.1| - 0.00049 19.5 0.7 0.15 11.3 0.1 2.5 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|332797817|ref|YP_004459317.1| - 0.013 14.8 0.2 0.019 14.3 0.2 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.27 gi|332797817|ref|YP_004459317.1| - 0.087 13.4 0.3 0.61 10.7 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332797817|ref|YP_004459317.1| - 0.09 11.5 0.0 0.51 9.0 0.1 1.9 2 0 0 2 2 2 0 HI0933-like protein Lycopene_cycl PF05834.12 gi|332797817|ref|YP_004459317.1| - 0.11 11.6 0.1 0.22 10.5 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|332797817|ref|YP_004459317.1| - 0.23 11.4 0.1 5.1 7.1 0.1 2.3 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|332797817|ref|YP_004459317.1| - 0.27 10.3 0.1 0.48 9.4 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain DUF3659 PF12396.8 gi|332797817|ref|YP_004459317.1| - 0.29 11.1 3.0 2.1 8.3 0.1 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF3659) Asparaginase_2 PF01112.18 gi|332797819|ref|YP_004459319.1| - 7.6e-72 241.9 11.3 1.8e-39 135.6 5.4 2.0 1 1 1 2 2 2 2 Asparaginase Metallophos_2 PF12850.7 gi|332797820|ref|YP_004459320.1| - 0.00011 22.5 0.0 0.00014 22.1 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain CCB1 PF12046.8 gi|332797820|ref|YP_004459320.1| - 0.14 11.5 0.0 0.22 10.8 0.0 1.3 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B Thymidylat_synt PF00303.19 gi|332797821|ref|YP_004459321.1| - 0.033 13.3 0.1 0.037 13.2 0.1 1.1 1 0 0 1 1 1 0 Thymidylate synthase Pox_I1 PF03289.13 gi|332797822|ref|YP_004459322.1| - 0.0016 17.6 0.3 0.081 12.0 0.1 2.0 2 0 0 2 2 2 2 Poxvirus protein I1 FTH PF01827.27 gi|332797822|ref|YP_004459322.1| - 0.036 13.9 0.2 0.044 13.6 0.2 1.2 1 0 0 1 1 1 0 FTH domain Clathrin PF00637.20 gi|332797822|ref|YP_004459322.1| - 0.041 13.8 0.6 0.084 12.7 0.3 1.6 2 1 0 2 2 2 0 Region in Clathrin and VPS RSV_NS2 PF03113.14 gi|332797822|ref|YP_004459322.1| - 0.043 13.8 0.3 0.056 13.5 0.3 1.2 1 0 0 1 1 1 0 Respiratory synctial virus non-structural protein NS2 DAO PF01266.24 gi|332797823|ref|YP_004459323.1| - 7.4e-16 58.7 0.1 9.8e-08 32.0 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|332797823|ref|YP_004459323.1| - 4.9e-10 39.2 0.1 2e-08 33.9 0.0 2.4 2 1 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|332797823|ref|YP_004459323.1| - 6e-10 38.8 0.0 2.7e-05 23.5 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|332797823|ref|YP_004459323.1| - 2.5e-08 33.7 0.1 1.5e-07 31.1 0.1 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|332797823|ref|YP_004459323.1| - 2.1e-07 30.5 0.0 6e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|332797823|ref|YP_004459323.1| - 2.7e-07 30.7 0.0 1.1e-06 28.7 0.0 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|332797823|ref|YP_004459323.1| - 7.3e-07 28.6 0.0 2.4e-06 26.9 0.0 1.7 2 0 0 2 2 2 1 Glucose inhibited division protein A Trp_halogenase PF04820.14 gi|332797823|ref|YP_004459323.1| - 1.7e-05 23.9 0.0 0.033 13.0 0.0 2.2 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.27 gi|332797823|ref|YP_004459323.1| - 0.00022 21.7 0.0 0.0016 19.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|332797823|ref|YP_004459323.1| - 0.00023 20.5 0.1 0.0027 17.0 0.1 2.3 1 1 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|332797823|ref|YP_004459323.1| - 0.00064 18.5 0.0 0.0012 17.7 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|332797823|ref|YP_004459323.1| - 0.0009 18.4 0.1 0.0021 17.2 0.1 1.6 1 1 0 1 1 1 1 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|332797823|ref|YP_004459323.1| - 0.028 14.0 0.0 0.048 13.2 0.0 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_3 PF13738.6 gi|332797823|ref|YP_004459323.1| - 0.029 13.7 0.0 0.53 9.5 0.0 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|332797823|ref|YP_004459323.1| - 0.044 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|332797823|ref|YP_004459323.1| - 0.063 13.3 0.0 0.2 11.7 0.0 1.9 2 0 0 2 2 1 0 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|332797823|ref|YP_004459323.1| - 0.074 13.5 0.0 0.22 12.0 0.0 1.9 2 0 0 2 2 1 0 Putative NAD(P)-binding SoxG PF04268.12 gi|332797823|ref|YP_004459323.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Sarcosine oxidase, gamma subunit family AlaDh_PNT_C PF01262.21 gi|332797823|ref|YP_004459323.1| - 0.21 10.9 0.0 0.42 9.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain DUF2070 PF09843.9 gi|332797824|ref|YP_004459324.1| - 4.6e-84 282.7 7.2 5.6e-84 282.4 7.2 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Hydrolase_6 PF13344.6 gi|332797826|ref|YP_004459326.1| - 3.9e-25 87.9 0.0 1.1e-24 86.5 0.0 1.7 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|332797826|ref|YP_004459326.1| - 1.5e-19 69.8 0.0 3.6e-19 68.6 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|332797826|ref|YP_004459326.1| - 5.3e-08 33.4 0.0 1.2e-07 32.2 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|332797826|ref|YP_004459326.1| - 1.2e-06 28.7 0.3 0.00013 22.1 0.0 2.6 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|332797826|ref|YP_004459326.1| - 0.00045 19.9 0.9 0.0036 16.9 0.1 2.5 3 0 0 3 3 3 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|332797826|ref|YP_004459326.1| - 0.019 14.7 0.1 0.079 12.7 0.0 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase AA_kinase PF00696.28 gi|332797826|ref|YP_004459326.1| - 0.098 12.2 0.5 0.31 10.6 0.0 2.0 2 1 0 2 2 2 0 Amino acid kinase family DUF218 PF02698.17 gi|332797826|ref|YP_004459326.1| - 0.19 11.7 0.0 0.52 10.3 0.0 1.7 2 0 0 2 2 2 0 DUF218 domain FAD_binding_2 PF00890.24 gi|332797827|ref|YP_004459327.1| - 4.2e-112 375.3 0.3 5.1e-112 375.0 0.3 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|332797827|ref|YP_004459327.1| - 6.9e-43 145.7 0.2 1.1e-42 145.0 0.2 1.3 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|332797827|ref|YP_004459327.1| - 1.4e-07 31.4 1.4 1.2e-05 25.1 1.4 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|332797827|ref|YP_004459327.1| - 2.5e-06 26.5 0.2 0.00016 20.5 0.5 2.2 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|332797827|ref|YP_004459327.1| - 8.2e-05 22.0 0.2 0.00023 20.5 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332797827|ref|YP_004459327.1| - 0.00014 21.1 2.0 0.00066 18.9 1.4 2.0 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|332797827|ref|YP_004459327.1| - 0.00022 20.6 0.9 0.035 13.3 0.2 2.8 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|332797827|ref|YP_004459327.1| - 0.00071 18.9 0.3 0.0011 18.3 0.3 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|332797827|ref|YP_004459327.1| - 0.00083 19.5 0.4 0.0028 17.8 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|332797827|ref|YP_004459327.1| - 0.014 14.8 2.6 0.068 12.5 1.9 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|332797827|ref|YP_004459327.1| - 0.025 13.7 0.1 0.052 12.6 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|332797827|ref|YP_004459327.1| - 0.15 12.6 1.9 0.66 10.6 1.9 2.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.6 gi|332797828|ref|YP_004459328.1| - 7.6e-33 112.8 0.1 1.9e-32 111.5 0.1 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|332797828|ref|YP_004459328.1| - 4.8e-11 42.9 1.7 4.8e-11 42.9 1.7 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332797828|ref|YP_004459328.1| - 5.1e-09 36.2 6.8 0.00057 20.0 0.1 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797828|ref|YP_004459328.1| - 8.3e-08 32.7 4.7 8.3e-08 32.7 4.7 2.6 2 2 1 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797828|ref|YP_004459328.1| - 3.2e-07 30.4 7.4 0.0046 17.1 0.2 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797828|ref|YP_004459328.1| - 7.1e-05 23.3 17.2 0.0012 19.3 9.3 3.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|332797828|ref|YP_004459328.1| - 0.0001 22.5 2.8 0.13 12.5 0.2 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332797828|ref|YP_004459328.1| - 0.00019 21.1 18.9 0.0053 16.5 1.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|332797828|ref|YP_004459328.1| - 0.00027 20.9 14.9 0.0016 18.4 0.8 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332797828|ref|YP_004459328.1| - 0.0025 17.9 10.6 0.04 14.1 0.4 3.0 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|332797828|ref|YP_004459328.1| - 0.0032 18.2 3.1 2.1 9.1 0.6 2.7 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.6 gi|332797828|ref|YP_004459328.1| - 0.017 16.1 15.3 0.064 14.2 11.7 3.1 2 1 2 4 4 4 0 4Fe-4S double cluster binding domain Fer4_3 PF12798.7 gi|332797828|ref|YP_004459328.1| - 0.043 14.8 2.7 0.043 14.8 2.7 3.2 3 0 0 3 3 2 0 4Fe-4S binding domain Fer2 PF00111.27 gi|332797828|ref|YP_004459328.1| - 0.051 13.5 0.6 0.051 13.5 0.6 2.2 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Fer4_4 PF12800.7 gi|332797828|ref|YP_004459328.1| - 0.091 13.3 1.0 0.091 13.3 1.0 3.1 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_13 PF13370.6 gi|332797828|ref|YP_004459328.1| - 0.11 13.1 11.3 0.11 13.0 1.7 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_22 PF17179.4 gi|332797828|ref|YP_004459328.1| - 0.13 13.1 4.8 2 9.3 0.1 3.0 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|332797828|ref|YP_004459328.1| - 0.22 11.3 8.7 0.54 10.0 0.3 3.1 4 0 0 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.7 gi|332797828|ref|YP_004459328.1| - 4 7.7 20.8 0.25 11.5 2.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain CCG PF02754.16 gi|332797829|ref|YP_004459329.1| - 5.4e-35 119.5 3.0 4e-19 68.6 0.2 2.5 3 0 0 3 3 3 2 Cysteine-rich domain CxC4 PF18717.1 gi|332797829|ref|YP_004459329.1| - 0.0038 17.1 0.2 0.27 11.1 0.1 2.2 2 0 0 2 2 2 2 CxC4 like cysteine cluster associated with KDZ transposases Myb_DNA-binding PF00249.31 gi|332797830|ref|YP_004459330.1| - 0.048 13.9 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 Myb-like DNA-binding domain UBA_3 PF09288.10 gi|332797830|ref|YP_004459330.1| - 0.088 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Fungal ubiquitin-associated domain VWA PF00092.28 gi|332797831|ref|YP_004459331.1| - 1e-08 35.6 0.9 2.4e-07 31.1 0.1 2.8 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|332797831|ref|YP_004459331.1| - 5.2e-06 26.0 0.0 1.1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein VWA_3 PF13768.6 gi|332797831|ref|YP_004459331.1| - 7.9e-06 25.9 0.0 1.6e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|332797831|ref|YP_004459331.1| - 2.3e-05 25.0 0.1 0.0017 18.9 0.0 3.1 3 1 0 3 3 3 1 von Willebrand factor type A domain COMM_domain PF07258.14 gi|332797831|ref|YP_004459331.1| - 0.023 14.8 0.3 0.047 13.8 0.3 1.5 1 0 0 1 1 1 0 COMM domain GET2 PF08690.10 gi|332797831|ref|YP_004459331.1| - 0.032 13.9 1.3 0.049 13.3 1.3 1.2 1 0 0 1 1 1 0 GET complex subunit GET2 PP2C_2 PF13672.6 gi|332797831|ref|YP_004459331.1| - 0.11 12.1 1.0 0.31 10.7 0.0 2.0 2 0 0 2 2 2 0 Protein phosphatase 2C TEX13 PF15186.6 gi|332797831|ref|YP_004459331.1| - 0.15 11.7 2.6 0.28 10.8 2.6 1.4 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family AAA_5 PF07728.14 gi|332797832|ref|YP_004459332.1| - 5.2e-29 101.0 0.0 3.2e-28 98.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_lid_8 PF17868.1 gi|332797832|ref|YP_004459332.1| - 1.2e-09 37.9 0.2 3.7e-09 36.3 0.0 1.9 2 0 0 2 2 2 1 AAA lid domain AAA_16 PF13191.6 gi|332797832|ref|YP_004459332.1| - 2.5e-05 24.7 0.2 6.6e-05 23.4 0.1 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_3 PF07726.11 gi|332797832|ref|YP_004459332.1| - 7.5e-05 22.6 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|332797832|ref|YP_004459332.1| - 0.0001 21.7 0.0 0.00092 18.7 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.29 gi|332797832|ref|YP_004459332.1| - 0.00011 22.6 0.0 0.00039 20.9 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|332797832|ref|YP_004459332.1| - 0.00075 19.8 0.0 0.0039 17.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|332797832|ref|YP_004459332.1| - 0.0032 17.2 0.0 0.0092 15.7 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|332797832|ref|YP_004459332.1| - 0.0032 16.6 0.0 0.008 15.3 0.0 1.6 1 0 0 1 1 1 1 MCM P-loop domain EF-G-binding_N PF07299.11 gi|332797832|ref|YP_004459332.1| - 0.032 14.7 0.1 13 6.3 0.0 3.3 3 0 0 3 3 3 0 Elongation factor G-binding protein, N-terminal AAA_7 PF12775.7 gi|332797832|ref|YP_004459332.1| - 0.036 13.6 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region PMC2NT PF08066.12 gi|332797832|ref|YP_004459332.1| - 0.036 14.7 0.0 0.1 13.3 0.0 1.8 1 0 0 1 1 1 0 PMC2NT (NUC016) domain IstB_IS21 PF01695.17 gi|332797832|ref|YP_004459332.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein RuvB_N PF05496.12 gi|332797832|ref|YP_004459332.1| - 0.098 12.4 0.1 0.49 10.1 0.1 2.1 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|332797832|ref|YP_004459332.1| - 0.18 11.9 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain tRNA_anti-codon PF01336.25 gi|332797833|ref|YP_004459333.1| - 3.3e-08 33.4 3.2 4.5e-08 33.0 3.2 1.2 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|332797833|ref|YP_004459333.1| - 5.2e-06 26.3 0.8 7.2e-06 25.8 0.8 1.2 1 0 0 1 1 1 1 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|332797833|ref|YP_004459333.1| - 3.6e-05 23.6 0.2 4e-05 23.4 0.2 1.1 1 0 0 1 1 1 1 Cell division control protein 24, OB domain 3 DUF4082 PF13313.6 gi|332797833|ref|YP_004459333.1| - 0.017 15.2 0.1 0.021 14.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4082) CopK PF11525.8 gi|332797833|ref|YP_004459333.1| - 0.15 11.7 1.9 0.29 10.8 0.9 2.0 1 1 1 2 2 2 0 Copper resistance protein K PqqD PF05402.12 gi|332797834|ref|YP_004459334.1| - 1.8e-12 47.3 0.1 2.6e-12 46.8 0.1 1.2 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) NiFeSe_Hases PF00374.19 gi|332797834|ref|YP_004459334.1| - 0.027 13.4 0.0 0.027 13.4 0.0 1.1 1 0 0 1 1 1 0 Nickel-dependent hydrogenase FERM_N PF09379.10 gi|332797834|ref|YP_004459334.1| - 0.062 13.2 0.2 0.14 12.1 0.2 1.8 1 1 0 1 1 1 0 FERM N-terminal domain MoeA_N PF03453.17 gi|332797835|ref|YP_004459335.1| - 3.8e-36 124.2 0.0 1.1e-35 122.8 0.0 1.8 2 0 0 2 2 2 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|332797835|ref|YP_004459335.1| - 8.2e-29 100.1 0.0 1.3e-28 99.5 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|332797835|ref|YP_004459335.1| - 2.7e-11 43.5 0.0 9.8e-11 41.7 0.0 2.0 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) Tubulin PF00091.25 gi|332797835|ref|YP_004459335.1| - 0.057 13.6 0.0 0.099 12.8 0.0 1.3 1 0 0 1 1 1 0 Tubulin/FtsZ family, GTPase domain T2SSE PF00437.20 gi|332797835|ref|YP_004459335.1| - 0.21 10.6 0.0 0.34 9.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein GHMP_kinases_N PF00288.26 gi|332797836|ref|YP_004459336.1| - 4.3e-16 58.9 0.4 8.1e-16 58.0 0.4 1.5 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|332797836|ref|YP_004459336.1| - 6.4e-10 39.3 0.0 2.9e-09 37.2 0.0 1.9 2 0 0 2 2 2 1 GHMP kinases C terminal Cys_Met_Meta_PP PF01053.20 gi|332797837|ref|YP_004459337.1| - 4.7e-127 423.7 0.0 5.4e-127 423.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|332797837|ref|YP_004459337.1| - 8.4e-08 31.8 0.0 2.1e-07 30.5 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|332797837|ref|YP_004459337.1| - 0.00011 21.4 0.0 0.0015 17.6 0.0 2.0 2 0 0 2 2 2 1 Aminotransferase class-V Met_gamma_lyase PF06838.11 gi|332797837|ref|YP_004459337.1| - 0.00091 17.9 0.0 0.29 9.6 0.0 2.2 2 0 0 2 2 2 2 Methionine gamma-lyase GDC-P PF02347.16 gi|332797837|ref|YP_004459337.1| - 0.0037 16.2 0.0 0.0051 15.7 0.0 1.2 1 0 0 1 1 1 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|332797837|ref|YP_004459337.1| - 0.046 13.0 0.0 0.6 9.3 0.0 2.2 1 1 0 1 1 1 0 Beta-eliminating lyase BRK PF07533.16 gi|332797837|ref|YP_004459337.1| - 0.093 12.4 0.0 17 5.1 0.0 2.4 2 0 0 2 2 2 0 BRK domain DegT_DnrJ_EryC1 PF01041.17 gi|332797837|ref|YP_004459337.1| - 0.24 10.6 1.2 4.7 6.4 0.0 3.0 4 0 0 4 4 4 0 DegT/DnrJ/EryC1/StrS aminotransferase family DUF1152 PF06626.12 gi|332797840|ref|YP_004459340.1| - 4.3e-115 384.0 0.0 5.1e-115 383.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1152) DnaB_2 PF07261.11 gi|332797841|ref|YP_004459341.1| - 0.0013 18.5 0.1 0.0027 17.4 0.1 1.5 1 0 0 1 1 1 1 Replication initiation and membrane attachment DUF3883 PF13020.6 gi|332797841|ref|YP_004459341.1| - 0.0015 18.6 0.3 0.0042 17.1 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3883) Nup54_57_C PF18570.1 gi|332797841|ref|YP_004459341.1| - 0.073 12.7 0.3 11 5.8 0.0 2.6 2 0 0 2 2 2 0 NUP57/Nup54 C-terminal domain DUF3481 PF11980.8 gi|332797841|ref|YP_004459341.1| - 0.12 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of neuropilin glycoprotein S1-like PF14444.6 gi|332797841|ref|YP_004459341.1| - 0.18 11.7 0.0 0.4 10.6 0.0 1.5 1 0 0 1 1 1 0 S1-like KH_1 PF00013.29 gi|332797842|ref|YP_004459342.1| - 2.8e-06 27.0 3.8 2e-05 24.3 2.5 2.3 2 0 0 2 2 2 1 KH domain Pescadillo_N PF06732.11 gi|332797842|ref|YP_004459342.1| - 0.053 13.0 0.1 0.069 12.7 0.1 1.2 1 0 0 1 1 1 0 Pescadillo N-terminus RIO1 PF01163.22 gi|332797843|ref|YP_004459343.1| - 6.3e-61 205.3 0.8 6.3e-61 205.3 0.8 1.5 2 0 0 2 2 2 1 RIO1 family Pkinase_fungal PF17667.1 gi|332797843|ref|YP_004459343.1| - 0.0011 17.8 0.1 0.0011 17.8 0.1 1.2 1 0 0 1 1 1 1 Fungal protein kinase APH PF01636.23 gi|332797843|ref|YP_004459343.1| - 0.021 14.7 0.0 0.26 11.1 0.0 2.3 1 1 1 2 2 2 0 Phosphotransferase enzyme family Kdo PF06293.14 gi|332797843|ref|YP_004459343.1| - 0.033 13.5 0.0 0.17 11.2 0.0 2.0 1 1 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family eIF-1a PF01176.19 gi|332797844|ref|YP_004459344.1| - 3.6e-24 84.4 0.5 4.5e-24 84.0 0.5 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF910 PF06014.11 gi|332797844|ref|YP_004459344.1| - 0.069 13.2 0.1 0.1 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF910) Thiolase_N PF00108.23 gi|332797845|ref|YP_004459345.1| - 9.5e-90 300.5 2.4 1.2e-89 300.1 2.4 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|332797845|ref|YP_004459345.1| - 3.1e-37 127.0 0.1 5e-36 123.1 0.0 2.4 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|332797845|ref|YP_004459345.1| - 1e-06 28.5 2.8 9.9e-06 25.3 1.7 2.4 2 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain SpoVAD PF07451.11 gi|332797845|ref|YP_004459345.1| - 0.00029 19.6 0.0 0.0025 16.6 0.1 2.0 2 0 0 2 2 2 1 Stage V sporulation protein AD (SpoVAD) FAE1_CUT1_RppA PF08392.12 gi|332797845|ref|YP_004459345.1| - 0.021 14.1 0.1 0.036 13.4 0.1 1.3 1 0 0 1 1 1 0 FAE1/Type III polyketide synthase-like protein ACP_syn_III PF08545.10 gi|332797845|ref|YP_004459345.1| - 0.13 12.1 1.8 2.5 8.0 0.5 2.4 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Radical_SAM PF04055.21 gi|332797846|ref|YP_004459346.1| - 1e-26 94.3 0.1 5e-26 92.1 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|332797846|ref|YP_004459346.1| - 2.4e-20 72.4 0.0 4.3e-20 71.6 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|332797846|ref|YP_004459346.1| - 2.9e-06 27.2 0.3 6.7e-06 26.0 0.3 1.7 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|332797846|ref|YP_004459346.1| - 0.055 13.6 0.4 0.23 11.7 0.1 2.3 2 1 0 2 2 2 0 TRAM domain eIF-5_eIF-2B PF01873.17 gi|332797847|ref|YP_004459347.1| - 1e-32 112.5 0.9 1.2e-32 112.2 0.9 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 SUI1 PF01253.22 gi|332797847|ref|YP_004459347.1| - 0.0034 17.9 0.0 0.0097 16.4 0.0 1.8 2 0 0 2 2 2 1 Translation initiation factor SUI1 HI0933_like PF03486.14 gi|332797847|ref|YP_004459347.1| - 0.15 10.7 0.0 0.17 10.5 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein DUF424 PF04242.13 gi|332797848|ref|YP_004459348.1| - 1.2e-25 89.6 1.9 1.4e-25 89.4 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) PIH1 PF08190.12 gi|332797848|ref|YP_004459348.1| - 0.16 11.4 0.2 0.21 11.1 0.2 1.2 1 0 0 1 1 1 0 PIH1 N-terminal domain NMD3 PF04981.13 gi|332797849|ref|YP_004459349.1| - 3.8e-46 157.5 4.6 4.2e-46 157.4 4.6 1.0 1 0 0 1 1 1 1 NMD3 family zf-C4pol PF14260.6 gi|332797849|ref|YP_004459349.1| - 0.21 12.1 3.4 26 5.4 0.0 2.9 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta DUF4428 PF14471.6 gi|332797849|ref|YP_004459349.1| - 0.35 10.8 7.2 16 5.5 0.1 4.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) DZR PF12773.7 gi|332797849|ref|YP_004459349.1| - 1.5 8.9 5.6 0.72 9.9 0.8 2.4 2 1 0 3 3 3 0 Double zinc ribbon zf-HIT PF04438.16 gi|332797849|ref|YP_004459349.1| - 6.8 6.7 8.3 6.5 6.7 0.2 3.2 3 0 0 3 3 3 0 HIT zinc finger RNase_HII PF01351.18 gi|332797850|ref|YP_004459350.1| - 2.1e-34 119.1 0.2 2.4e-34 118.9 0.2 1.0 1 0 0 1 1 1 1 Ribonuclease HII TGS PF02824.21 gi|332797851|ref|YP_004459351.1| - 2.2e-20 72.4 0.0 3.9e-20 71.7 0.0 1.4 1 0 0 1 1 1 1 TGS domain MMR_HSR1_Xtn PF16897.5 gi|332797851|ref|YP_004459351.1| - 1.1e-07 31.8 0.1 2.2e-07 30.8 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain CBS PF00571.28 gi|332797851|ref|YP_004459351.1| - 0.028 14.9 0.1 3.8 8.0 0.0 3.0 3 0 0 3 3 3 0 CBS domain T2SSF PF00482.23 gi|332797852|ref|YP_004459352.1| - 4.7e-22 78.3 4.8 5.1e-12 45.8 0.2 5.0 6 0 0 6 6 6 2 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|332797853|ref|YP_004459353.1| - 2.7e-43 148.0 0.0 4.7e-43 147.2 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF87 PF01935.17 gi|332797853|ref|YP_004459353.1| - 0.0086 16.2 0.4 0.023 14.8 0.0 2.0 2 0 0 2 2 2 1 Helicase HerA, central domain AAA_7 PF12775.7 gi|332797853|ref|YP_004459353.1| - 0.023 14.2 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region SRP54 PF00448.22 gi|332797853|ref|YP_004459353.1| - 0.042 13.5 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC_tran PF00005.27 gi|332797853|ref|YP_004459353.1| - 0.065 13.8 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 ABC transporter AAA_14 PF13173.6 gi|332797853|ref|YP_004459353.1| - 0.08 13.0 0.1 0.63 10.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain cobW PF02492.19 gi|332797853|ref|YP_004459353.1| - 0.085 12.4 0.6 0.2 11.2 0.0 1.9 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.6 gi|332797853|ref|YP_004459353.1| - 0.087 12.6 0.2 0.8 9.5 0.0 2.3 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|332797853|ref|YP_004459353.1| - 0.088 13.1 0.0 0.26 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Arf PF00025.21 gi|332797853|ref|YP_004459353.1| - 0.12 11.8 0.5 5.3 6.5 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family AAA_16 PF13191.6 gi|332797853|ref|YP_004459353.1| - 0.12 12.7 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.6 gi|332797853|ref|YP_004459353.1| - 0.18 12.2 0.0 0.66 10.3 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|332797853|ref|YP_004459353.1| - 0.18 11.5 0.0 0.41 10.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Glyco_tranf_2_3 PF13641.6 gi|332797854|ref|YP_004459354.1| - 1.6e-28 100.2 0.0 2e-28 99.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|332797854|ref|YP_004459354.1| - 7.1e-25 87.8 1.3 1.1e-24 87.2 1.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|332797854|ref|YP_004459354.1| - 2.4e-23 83.1 0.6 5e-23 82.0 0.6 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|332797854|ref|YP_004459354.1| - 1.8e-14 53.9 1.5 2.6e-14 53.4 1.5 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|332797854|ref|YP_004459354.1| - 4.7e-10 39.2 0.0 1.1e-09 37.9 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 21 Cellulose_synt PF03552.14 gi|332797854|ref|YP_004459354.1| - 0.0011 17.6 5.5 0.0018 16.9 5.5 1.4 1 0 0 1 1 1 1 Cellulose synthase P2 PF07194.11 gi|332797854|ref|YP_004459354.1| - 0.031 14.3 3.4 0.11 12.6 0.2 2.4 1 1 1 2 2 2 0 P2 response regulator binding domain AhpC-TSA PF00578.21 gi|332797854|ref|YP_004459354.1| - 0.1 12.5 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 AhpC/TSA family Sipho_tail PF05709.11 gi|332797854|ref|YP_004459354.1| - 0.14 11.6 1.0 0.24 10.8 1.0 1.3 1 0 0 1 1 1 0 Phage tail protein Pyrophosphatase PF00719.19 gi|332797855|ref|YP_004459355.1| - 9.4e-57 191.3 0.3 1.1e-56 191.1 0.3 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase HD_3 PF13023.6 gi|332797856|ref|YP_004459356.1| - 8.8e-17 61.5 0.0 1.1e-15 58.0 0.0 2.0 1 1 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|332797856|ref|YP_004459356.1| - 1.3e-15 57.7 0.2 1.2e-14 54.5 0.2 1.9 1 1 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|332797856|ref|YP_004459356.1| - 4.9e-09 36.5 0.2 8e-08 32.5 0.2 2.2 1 1 0 1 1 1 1 HD domain HDOD PF08668.12 gi|332797856|ref|YP_004459356.1| - 0.00011 21.7 0.0 0.00016 21.2 0.0 1.2 1 0 0 1 1 1 1 HDOD domain Sec5 PF15469.6 gi|332797856|ref|YP_004459356.1| - 0.029 14.2 0.7 0.045 13.6 0.7 1.3 1 0 0 1 1 1 0 Exocyst complex component Sec5 Phos_pyr_kin PF08543.12 gi|332797857|ref|YP_004459357.1| - 3.7e-73 245.9 0.1 4.8e-73 245.6 0.1 1.1 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|332797857|ref|YP_004459357.1| - 1.7e-47 161.1 0.0 1.3e-46 158.3 0.0 2.1 2 0 0 2 2 2 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|332797857|ref|YP_004459357.1| - 1.7e-09 37.4 0.0 2.6e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|332797857|ref|YP_004459357.1| - 0.051 13.0 0.0 0.094 12.2 0.0 1.4 1 0 0 1 1 1 0 Carbohydrate kinase MoaE PF02391.17 gi|332797858|ref|YP_004459358.1| - 2.7e-18 66.3 0.0 3.8e-18 65.8 0.0 1.2 1 0 0 1 1 1 1 MoaE protein ThiS PF02597.20 gi|332797858|ref|YP_004459358.1| - 2.8e-12 47.1 0.0 7.2e-12 45.8 0.0 1.7 1 0 0 1 1 1 1 ThiS family FAD_binding_4 PF01565.23 gi|332797860|ref|YP_004459360.1| - 1.4e-08 34.6 0.0 4.4e-08 32.9 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.6 gi|332797860|ref|YP_004459360.1| - 3.1e-06 27.6 1.0 5.8e-06 26.7 1.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|332797860|ref|YP_004459360.1| - 0.0002 21.9 1.9 0.0004 20.9 1.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|332797860|ref|YP_004459360.1| - 0.00091 19.3 3.0 0.0022 18.1 3.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|332797860|ref|YP_004459360.1| - 0.0011 19.5 1.8 0.0024 18.4 1.8 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332797860|ref|YP_004459360.1| - 0.021 15.0 1.5 1.5 9.0 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332797860|ref|YP_004459360.1| - 0.085 13.0 4.0 0.58 10.4 1.5 2.2 1 1 2 3 3 3 0 4Fe-4S dicluster domain GHMP_kinases_N PF00288.26 gi|332797861|ref|YP_004459361.1| - 2.6e-07 30.7 0.2 3.9e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 GHMP kinases N terminal domain PPS_PS PF02006.16 gi|332797862|ref|YP_004459362.1| - 7.9e-75 250.3 5.9 9.3e-75 250.0 5.9 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Gp-FAR-1 PF05823.12 gi|332797862|ref|YP_004459362.1| - 0.015 15.7 0.6 0.055 13.8 0.2 2.0 2 0 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) DarA_N PF18788.1 gi|332797862|ref|YP_004459362.1| - 0.06 13.4 0.1 0.21 11.7 0.1 2.0 1 1 0 1 1 1 0 Defence against restriction A N-terminal AlphaC_C PF17480.2 gi|332797862|ref|YP_004459362.1| - 0.087 12.9 0.6 0.24 11.4 0.2 1.9 1 1 0 1 1 1 0 AlphaC C-terminal OmpH PF03938.14 gi|332797863|ref|YP_004459363.1| - 0.016 15.5 1.3 0.027 14.8 1.3 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) ABC_tran PF00005.27 gi|332797864|ref|YP_004459364.1| - 4.7e-27 95.2 0.0 7e-27 94.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|332797864|ref|YP_004459364.1| - 1.3e-10 41.7 0.3 0.00032 20.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|332797864|ref|YP_004459364.1| - 0.0005 19.8 0.1 0.0006 19.6 0.1 1.4 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|332797864|ref|YP_004459364.1| - 0.00081 18.9 0.4 0.59 9.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|332797864|ref|YP_004459364.1| - 0.006 16.5 0.0 0.01 15.8 0.0 1.5 1 1 0 1 1 1 1 Rad17 P-loop domain AAA_23 PF13476.6 gi|332797864|ref|YP_004459364.1| - 0.0069 16.9 6.0 0.023 15.2 6.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_13 PF13166.6 gi|332797864|ref|YP_004459364.1| - 0.019 13.6 0.2 0.93 8.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|332797864|ref|YP_004459364.1| - 0.031 13.9 0.1 0.056 13.1 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Thymidylate_kin PF02223.17 gi|332797864|ref|YP_004459364.1| - 0.053 13.2 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase BCA_ABC_TP_C PF12399.8 gi|332797864|ref|YP_004459364.1| - 0.055 13.4 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter AAA_24 PF13479.6 gi|332797864|ref|YP_004459364.1| - 0.071 12.8 0.6 1 9.0 0.1 2.3 3 0 0 3 3 3 0 AAA domain MeaB PF03308.16 gi|332797864|ref|YP_004459364.1| - 0.072 12.1 0.1 0.12 11.4 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|332797864|ref|YP_004459364.1| - 0.12 12.7 0.2 0.31 11.3 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|332797864|ref|YP_004459364.1| - 0.14 11.7 0.0 0.24 11.0 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|332797864|ref|YP_004459364.1| - 0.18 11.6 0.1 0.33 10.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC2_membrane_3 PF12698.7 gi|332797865|ref|YP_004459365.1| - 2.7e-16 59.6 39.9 3.4e-16 59.3 39.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|332797865|ref|YP_004459365.1| - 1.7e-08 34.1 35.4 9.3e-08 31.7 35.4 2.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|332797865|ref|YP_004459365.1| - 4.7e-07 29.9 16.9 4.7e-07 29.9 16.9 3.1 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|332797865|ref|YP_004459365.1| - 0.00016 21.2 22.3 0.00016 21.2 22.3 3.4 1 1 2 3 3 3 2 ABC-2 type transporter AsnC_trans_reg PF01037.21 gi|332797866|ref|YP_004459366.1| - 3.3e-10 39.8 0.1 3.7e-10 39.6 0.1 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain GYD PF08734.11 gi|332797866|ref|YP_004459366.1| - 0.0014 18.5 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 GYD domain NapD PF03927.13 gi|332797866|ref|YP_004459366.1| - 0.0027 17.7 0.2 1.6 8.8 0.0 2.1 1 1 1 2 2 2 2 NapD protein HMA PF00403.26 gi|332797866|ref|YP_004459366.1| - 0.0043 17.5 0.5 0.006 17.0 0.5 1.2 1 0 0 1 1 1 1 Heavy-metal-associated domain DUF2536 PF10750.9 gi|332797866|ref|YP_004459366.1| - 0.036 14.0 0.1 0.065 13.1 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) Spore_YhcN_YlaJ PF09580.10 gi|332797866|ref|YP_004459366.1| - 0.11 12.6 1.4 0.13 12.3 1.4 1.1 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CopG_antitoxin PF12441.8 gi|332797867|ref|YP_004459367.1| - 0.00047 20.6 0.0 0.0011 19.5 0.0 1.6 1 0 0 1 1 1 1 CopG antitoxin of type II toxin-antitoxin system BLOC1_2 PF10046.9 gi|332797867|ref|YP_004459367.1| - 0.001 19.3 0.3 0.0013 19.0 0.3 1.2 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Ax_dynein_light PF10211.9 gi|332797867|ref|YP_004459367.1| - 0.013 15.5 5.4 0.015 15.3 5.4 1.1 1 0 0 1 1 1 0 Axonemal dynein light chain RHH_5 PF07878.11 gi|332797867|ref|YP_004459367.1| - 0.027 14.3 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 RHH_1 PF01402.21 gi|332797868|ref|YP_004459368.1| - 8e-09 35.1 0.2 1.1e-08 34.6 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.7 gi|332797868|ref|YP_004459368.1| - 0.00012 22.0 0.3 0.00017 21.5 0.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix domain Lactamase_B_3 PF13483.6 gi|332797869|ref|YP_004459369.1| - 1.5e-32 112.8 0.2 1.9e-32 112.4 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|332797869|ref|YP_004459369.1| - 1.3e-14 54.2 1.0 2.8e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|332797869|ref|YP_004459369.1| - 0.035 14.1 3.9 0.1 12.6 3.0 2.0 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily HMGL-like PF00682.19 gi|332797870|ref|YP_004459370.1| - 1.4e-65 221.5 1.8 1.8e-65 221.2 1.8 1.1 1 0 0 1 1 1 1 HMGL-like GDPD_2 PF13653.6 gi|332797870|ref|YP_004459370.1| - 0.044 14.2 0.0 1.1 9.8 0.0 2.5 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family MAF_flag10 PF01973.18 gi|332797871|ref|YP_004459371.1| - 4.5e-27 94.8 0.6 6e-27 94.4 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TPK_catalytic PF04263.16 gi|332797871|ref|YP_004459371.1| - 0.0024 17.9 0.2 0.0052 16.8 0.2 1.6 1 1 0 1 1 1 1 Thiamin pyrophosphokinase, catalytic domain THF_DHG_CYH_C PF02882.19 gi|332797871|ref|YP_004459371.1| - 0.6 9.4 3.2 1.4 8.2 0.7 2.1 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DASH_Spc34 PF08657.10 gi|332797873|ref|YP_004459373.1| - 0.01 15.6 0.1 0.012 15.5 0.1 1.1 1 0 0 1 1 1 0 DASH complex subunit Spc34 Syntaxin-6_N PF09177.11 gi|332797873|ref|YP_004459373.1| - 0.013 16.1 1.7 0.034 14.7 1.7 1.9 1 1 0 1 1 1 0 Syntaxin 6, N-terminal RNase_H_2 PF13482.6 gi|332797873|ref|YP_004459373.1| - 0.018 15.0 0.0 2.5 8.1 0.0 2.1 1 1 1 2 2 2 0 RNase_H superfamily ING PF12998.7 gi|332797873|ref|YP_004459373.1| - 0.065 13.8 0.4 0.14 12.8 0.4 1.5 1 0 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding HEPN PF05168.14 gi|332797873|ref|YP_004459373.1| - 0.11 12.7 0.1 0.15 12.2 0.1 1.2 1 0 0 1 1 1 0 HEPN domain Pox_A_type_inc PF04508.12 gi|332797873|ref|YP_004459373.1| - 0.9 9.5 3.4 1.9 8.5 1.3 2.4 1 1 1 2 2 2 0 Viral A-type inclusion protein repeat YvrJ PF12841.7 gi|332797873|ref|YP_004459373.1| - 1 8.9 3.1 8.4 6.0 0.2 2.4 2 0 0 2 2 2 0 YvrJ protein family RRF_GI PF12614.8 gi|332797875|ref|YP_004459375.1| - 0.051 13.7 0.1 0.2 11.8 0.0 1.8 2 0 0 2 2 2 0 Ribosome recycling factor PTPS PF01242.19 gi|332797876|ref|YP_004459376.1| - 1.6e-20 73.3 0.0 1.9e-20 73.0 0.0 1.0 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase eIF-1a PF01176.19 gi|332797876|ref|YP_004459376.1| - 0.039 13.8 0.0 0.091 12.6 0.0 1.7 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 DUF1861 PF08950.10 gi|332797877|ref|YP_004459377.1| - 0.047 12.9 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1861) DUF4346 PF14251.6 gi|332797878|ref|YP_004459378.1| - 0.00022 21.2 0.1 0.00072 19.6 0.1 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4346) CdhD PF03599.16 gi|332797878|ref|YP_004459378.1| - 0.0013 17.6 0.4 0.055 12.2 0.0 2.2 2 0 0 2 2 2 2 CO dehydrogenase/acetyl-CoA synthase delta subunit Pyr_redox_2 PF07992.14 gi|332797879|ref|YP_004459379.1| - 3.2e-50 171.0 1.2 3.8e-50 170.8 1.2 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332797879|ref|YP_004459379.1| - 4.3e-22 78.7 0.6 4.3e-22 78.7 0.6 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797879|ref|YP_004459379.1| - 3.3e-14 53.2 0.9 3.3e-14 53.2 0.9 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332797879|ref|YP_004459379.1| - 1.1e-05 24.3 2.0 0.03 13.0 0.0 3.3 3 0 0 3 3 3 3 HI0933-like protein K_oxygenase PF13434.6 gi|332797879|ref|YP_004459379.1| - 2e-05 23.9 0.2 0.0036 16.5 0.0 2.4 2 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|332797879|ref|YP_004459379.1| - 9.3e-05 21.7 6.7 0.25 10.4 0.0 4.1 3 2 0 4 4 4 3 Glucose inhibited division protein A Thi4 PF01946.17 gi|332797879|ref|YP_004459379.1| - 0.00031 20.1 7.5 0.38 10.0 0.1 3.2 2 1 1 3 3 3 3 Thi4 family FAD_oxidored PF12831.7 gi|332797879|ref|YP_004459379.1| - 0.0052 16.2 3.9 0.0096 15.3 0.1 2.5 2 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|332797879|ref|YP_004459379.1| - 0.01 15.0 3.2 0.88 8.6 0.0 2.8 3 1 0 3 3 3 0 FAD binding domain NAD_binding_7 PF13241.6 gi|332797879|ref|YP_004459379.1| - 0.017 15.6 1.7 0.059 13.8 0.5 2.2 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|332797879|ref|YP_004459379.1| - 0.05 13.6 0.9 4.3 7.3 0.0 2.7 3 0 0 3 3 3 0 FAD-NAD(P)-binding Inositol_P PF00459.25 gi|332797880|ref|YP_004459380.1| - 6.7e-25 88.1 0.0 7.7e-25 87.9 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|332797880|ref|YP_004459380.1| - 3.3e-07 30.0 0.0 5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain AAA PF00004.29 gi|332797881|ref|YP_004459381.1| - 9.8e-83 275.2 0.0 1.5e-40 138.7 0.1 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|332797881|ref|YP_004459381.1| - 9e-28 95.8 6.9 4.3e-14 52.0 1.0 2.7 2 0 0 2 2 2 2 AAA+ lid domain AAA_2 PF07724.14 gi|332797881|ref|YP_004459381.1| - 2.1e-14 54.0 0.0 4.8e-08 33.3 0.1 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.6 gi|332797881|ref|YP_004459381.1| - 1.1e-13 51.3 0.4 2.3e-06 27.7 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_18 PF13238.6 gi|332797881|ref|YP_004459381.1| - 1.1e-11 45.4 0.1 5.9e-05 23.6 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|332797881|ref|YP_004459381.1| - 1.4e-11 45.1 0.6 0.0088 16.4 0.0 4.6 3 2 1 5 5 4 2 AAA ATPase domain RuvB_N PF05496.12 gi|332797881|ref|YP_004459381.1| - 3e-11 43.3 0.1 5.5e-06 26.2 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|332797881|ref|YP_004459381.1| - 5.3e-11 43.0 2.8 0.00029 21.1 0.4 4.6 4 2 1 5 5 4 2 AAA domain AAA_5 PF07728.14 gi|332797881|ref|YP_004459381.1| - 9.8e-11 41.8 3.0 0.00026 21.0 0.5 4.4 3 2 0 3 3 3 2 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|332797881|ref|YP_004459381.1| - 5.5e-09 36.4 0.2 0.0029 18.0 0.0 3.2 3 1 0 3 3 2 2 RNA helicase AAA_17 PF13207.6 gi|332797881|ref|YP_004459381.1| - 1.2e-08 35.5 0.0 0.015 15.8 0.0 3.5 2 2 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|332797881|ref|YP_004459381.1| - 5.8e-08 32.7 0.0 0.011 15.4 0.0 2.7 2 1 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.6 gi|332797881|ref|YP_004459381.1| - 1.1e-07 32.1 0.0 0.0076 16.4 0.0 2.7 2 1 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|332797881|ref|YP_004459381.1| - 2.6e-07 30.7 1.3 0.14 12.1 0.1 4.2 2 2 2 4 4 4 2 NACHT domain Rad17 PF03215.15 gi|332797881|ref|YP_004459381.1| - 3.1e-07 30.5 1.1 0.063 13.2 0.0 3.7 2 2 2 4 4 4 2 Rad17 P-loop domain Mg_chelatase PF01078.21 gi|332797881|ref|YP_004459381.1| - 3.2e-07 30.0 0.9 0.0039 16.6 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|332797881|ref|YP_004459381.1| - 1.2e-06 28.4 0.0 0.0089 15.9 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|332797881|ref|YP_004459381.1| - 1.3e-06 28.7 0.0 0.057 13.7 0.0 2.6 2 0 0 2 2 2 2 AAA domain Vps4_C PF09336.10 gi|332797881|ref|YP_004459381.1| - 2.4e-06 27.4 1.3 0.0013 18.7 0.1 3.8 4 0 0 4 4 3 1 Vps4 C terminal oligomerisation domain AAA_7 PF12775.7 gi|332797881|ref|YP_004459381.1| - 2.8e-06 27.0 0.0 0.038 13.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region TsaE PF02367.17 gi|332797881|ref|YP_004459381.1| - 3.2e-06 27.1 0.0 0.015 15.3 0.0 2.6 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|332797881|ref|YP_004459381.1| - 3.8e-06 26.6 0.9 0.37 10.3 0.1 3.3 2 1 1 3 3 3 2 AAA domain AAA_24 PF13479.6 gi|332797881|ref|YP_004459381.1| - 5.1e-06 26.3 1.9 0.014 15.1 0.1 3.7 4 1 0 4 4 4 2 AAA domain TIP49 PF06068.13 gi|332797881|ref|YP_004459381.1| - 5.3e-06 25.9 0.0 0.022 14.0 0.0 2.7 2 0 0 2 2 2 2 TIP49 P-loop domain DUF815 PF05673.13 gi|332797881|ref|YP_004459381.1| - 1.8e-05 24.0 0.0 0.053 12.7 0.1 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|332797881|ref|YP_004459381.1| - 8.5e-05 22.5 0.0 0.26 11.1 0.0 2.9 2 1 0 2 2 2 2 Bacterial dnaA protein ATPase PF06745.13 gi|332797881|ref|YP_004459381.1| - 0.00016 21.1 3.9 0.044 13.1 0.1 3.2 3 1 1 4 4 3 2 KaiC AFG1_ATPase PF03969.16 gi|332797881|ref|YP_004459381.1| - 0.00019 20.4 0.0 0.1 11.5 0.0 2.6 3 0 0 3 3 2 1 AFG1-like ATPase ABC_tran PF00005.27 gi|332797881|ref|YP_004459381.1| - 0.00025 21.6 0.0 1.1 9.8 0.0 3.0 2 1 0 2 2 2 1 ABC transporter Sigma54_activat PF00158.26 gi|332797881|ref|YP_004459381.1| - 0.00058 19.6 0.0 1.1 8.9 0.0 2.7 2 1 0 2 2 2 2 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|332797881|ref|YP_004459381.1| - 0.00092 19.2 9.6 0.36 10.7 0.0 4.6 4 1 0 4 4 4 2 ATPase domain predominantly from Archaea AAA_30 PF13604.6 gi|332797881|ref|YP_004459381.1| - 0.00099 18.9 0.0 1.4 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain TniB PF05621.11 gi|332797881|ref|YP_004459381.1| - 0.0017 17.8 0.2 0.81 9.1 0.0 3.4 3 0 0 3 3 3 1 Bacterial TniB protein Adeno_IVa2 PF02456.15 gi|332797881|ref|YP_004459381.1| - 0.0018 17.2 0.0 0.13 11.1 0.0 2.3 2 0 0 2 2 2 1 Adenovirus IVa2 protein Guanylate_kin PF00625.21 gi|332797881|ref|YP_004459381.1| - 0.0018 18.0 0.6 1.4 8.6 0.0 3.8 4 1 1 5 5 4 1 Guanylate kinase Parvo_NS1 PF01057.17 gi|332797881|ref|YP_004459381.1| - 0.0018 17.4 0.0 0.16 11.0 0.0 2.3 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 PPV_E1_C PF00519.17 gi|332797881|ref|YP_004459381.1| - 0.0051 15.7 0.0 0.34 9.7 0.0 2.1 2 0 0 2 2 2 1 Papillomavirus helicase Zeta_toxin PF06414.12 gi|332797881|ref|YP_004459381.1| - 0.0053 16.1 0.1 0.99 8.6 0.0 2.9 3 0 0 3 3 2 1 Zeta toxin SRPRB PF09439.10 gi|332797881|ref|YP_004459381.1| - 0.0056 16.1 0.4 1.7 8.1 0.0 4.0 4 1 0 4 4 4 1 Signal recognition particle receptor beta subunit AAA_19 PF13245.6 gi|332797881|ref|YP_004459381.1| - 0.0064 16.8 0.0 7.1 7.0 0.0 2.7 2 0 0 2 2 2 0 AAA domain Cytidylate_kin2 PF13189.6 gi|332797881|ref|YP_004459381.1| - 0.0077 16.4 0.0 1.5 8.9 0.0 2.6 2 0 0 2 2 2 1 Cytidylate kinase-like family KTI12 PF08433.10 gi|332797881|ref|YP_004459381.1| - 0.008 15.7 0.1 0.25 10.8 0.2 2.8 2 1 0 2 2 2 1 Chromatin associated protein KTI12 Cytidylate_kin PF02224.18 gi|332797881|ref|YP_004459381.1| - 0.0082 15.9 0.3 0.78 9.4 0.2 3.0 2 1 1 3 3 3 1 Cytidylate kinase AAA_11 PF13086.6 gi|332797881|ref|YP_004459381.1| - 0.0083 15.9 0.1 4.1 7.1 0.0 2.8 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|332797881|ref|YP_004459381.1| - 0.0084 15.3 0.0 2.5 7.2 0.0 2.7 2 0 0 2 2 2 1 NB-ARC domain Sigma54_activ_2 PF14532.6 gi|332797881|ref|YP_004459381.1| - 0.0087 16.2 0.0 5.8 7.0 0.0 2.7 2 0 0 2 2 2 0 Sigma-54 interaction domain Viral_helicase1 PF01443.18 gi|332797881|ref|YP_004459381.1| - 0.01 15.6 0.0 0.79 9.4 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase RsgA_GTPase PF03193.16 gi|332797881|ref|YP_004459381.1| - 0.015 15.2 0.0 4.7 7.1 0.0 2.9 2 0 0 2 2 2 0 RsgA GTPase AAA_6 PF12774.7 gi|332797881|ref|YP_004459381.1| - 0.017 14.1 0.3 3.9 6.4 0.0 2.9 3 1 1 4 4 3 0 Hydrolytic ATP binding site of dynein motor region Glutaredoxin PF00462.24 gi|332797881|ref|YP_004459381.1| - 0.02 15.1 0.0 0.31 11.3 0.0 2.8 2 0 0 2 2 2 0 Glutaredoxin PhoH PF02562.16 gi|332797881|ref|YP_004459381.1| - 0.023 14.2 0.1 7.5 5.9 0.1 2.9 2 1 0 2 2 2 0 PhoH-like protein NTPase_1 PF03266.15 gi|332797881|ref|YP_004459381.1| - 0.025 14.5 0.0 1.2 9.0 0.0 2.8 2 1 0 2 2 2 0 NTPase DUF1677 PF07911.13 gi|332797881|ref|YP_004459381.1| - 0.025 14.9 0.0 0.066 13.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1677) DAP3 PF10236.9 gi|332797881|ref|YP_004459381.1| - 0.027 13.7 0.0 5.2 6.1 0.0 2.8 2 1 1 3 3 3 0 Mitochondrial ribosomal death-associated protein 3 dNK PF01712.19 gi|332797881|ref|YP_004459381.1| - 0.028 14.3 0.2 3.2 7.6 0.0 3.2 3 1 0 3 3 3 0 Deoxynucleoside kinase MMR_HSR1 PF01926.23 gi|332797881|ref|YP_004459381.1| - 0.03 14.4 0.2 21 5.2 0.0 3.7 4 1 0 4 4 2 0 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|332797881|ref|YP_004459381.1| - 0.036 13.8 0.1 4.7 6.9 0.0 3.0 3 0 0 3 3 2 0 Ethanolamine utilisation - propanediol utilisation RPW8 PF05659.11 gi|332797881|ref|YP_004459381.1| - 0.046 13.4 1.4 0.24 11.1 0.2 2.4 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Hydin_ADK PF17213.3 gi|332797881|ref|YP_004459381.1| - 0.051 13.8 0.1 3.2 8.0 0.1 3.1 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain ATP-synt_ab PF00006.25 gi|332797881|ref|YP_004459381.1| - 0.063 12.9 0.0 5.4 6.6 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SKI PF01202.22 gi|332797881|ref|YP_004459381.1| - 0.074 13.2 0.1 7.4 6.7 0.1 2.8 2 0 0 2 2 2 0 Shikimate kinase Ploopntkinase3 PF18751.1 gi|332797881|ref|YP_004459381.1| - 0.075 12.9 0.3 16 5.4 0.0 2.7 3 0 0 3 3 2 0 P-loop Nucleotide Kinase3 AAA_26 PF13500.6 gi|332797881|ref|YP_004459381.1| - 0.1 12.4 0.0 0.26 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|332797881|ref|YP_004459381.1| - 0.25 11.0 3.3 9.5 5.8 0.1 3.5 3 1 0 3 3 3 0 SRP54-type protein, GTPase domain DAO PF01266.24 gi|332797882|ref|YP_004459382.1| - 9.5e-15 55.0 0.0 6.4e-08 32.6 0.0 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|332797882|ref|YP_004459382.1| - 1.6e-13 50.8 0.0 6.1e-12 45.6 0.0 2.3 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|332797882|ref|YP_004459382.1| - 5.4e-12 45.8 0.4 4.2e-11 42.9 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|332797882|ref|YP_004459382.1| - 7.6e-09 35.1 0.4 7e-07 28.7 0.3 2.3 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.24 gi|332797882|ref|YP_004459382.1| - 1.4e-08 34.3 1.9 9.7e-05 21.6 0.8 2.9 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|332797882|ref|YP_004459382.1| - 8.6e-08 31.7 0.2 8.6e-06 25.2 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|332797882|ref|YP_004459382.1| - 7.7e-06 25.5 0.6 1.1e-05 25.0 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|332797882|ref|YP_004459382.1| - 1e-05 24.6 2.5 0.056 12.3 0.6 2.2 2 0 0 2 2 2 2 Tryptophan halogenase HI0933_like PF03486.14 gi|332797882|ref|YP_004459382.1| - 1.1e-05 24.4 0.5 0.0027 16.5 0.1 2.5 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|332797882|ref|YP_004459382.1| - 2.9e-05 23.5 0.1 0.0001 21.7 0.1 1.7 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|332797882|ref|YP_004459382.1| - 3.1e-05 24.4 2.4 0.0026 18.3 0.4 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|332797882|ref|YP_004459382.1| - 0.00019 20.6 6.1 0.0045 16.1 0.3 2.6 2 1 1 3 3 3 2 Glucose inhibited division protein A GDI PF00996.18 gi|332797882|ref|YP_004459382.1| - 0.0014 17.2 0.1 0.66 8.4 0.0 2.2 2 0 0 2 2 2 2 GDP dissociation inhibitor Lycopene_cycl PF05834.12 gi|332797882|ref|YP_004459382.1| - 0.1 11.7 0.2 0.25 10.4 0.2 1.7 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_9 PF13454.6 gi|332797882|ref|YP_004459382.1| - 0.15 12.0 1.2 0.24 11.4 0.3 1.7 2 0 0 2 2 2 0 FAD-NAD(P)-binding Phosphodiest PF01663.22 gi|332797883|ref|YP_004459383.1| - 5.3e-16 59.1 3.2 4.7e-15 56.0 3.2 2.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|332797883|ref|YP_004459383.1| - 1.5e-07 31.7 0.2 1.3e-06 28.6 0.1 2.1 2 0 0 2 2 2 1 PglZ domain Metalloenzyme PF01676.18 gi|332797883|ref|YP_004459383.1| - 1e-05 25.0 0.1 4.1e-05 23.1 0.1 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily NAD_Gly3P_dh_C PF07479.14 gi|332797883|ref|YP_004459383.1| - 0.051 13.9 0.0 0.15 12.4 0.0 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Pribosyltran PF00156.27 gi|332797884|ref|YP_004459384.1| - 3.3e-26 91.7 0.2 4e-26 91.4 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|332797884|ref|YP_004459384.1| - 0.0023 17.4 0.0 0.0028 17.1 0.0 1.1 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase MM_CoA_mutase PF01642.22 gi|332797885|ref|YP_004459385.1| - 6.2e-214 711.3 0.0 7.1e-214 711.1 0.0 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Glyoxalase_4 PF13669.6 gi|332797886|ref|YP_004459386.1| - 1.4e-25 89.6 0.0 1.7e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|332797886|ref|YP_004459386.1| - 1e-15 58.0 0.0 1.1e-15 57.9 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|332797886|ref|YP_004459386.1| - 6.1e-11 42.8 0.0 7.4e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain DUF1338 PF07063.13 gi|332797886|ref|YP_004459386.1| - 0.0025 17.0 0.1 0.04 13.1 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1338) Glyoxalase_5 PF14696.6 gi|332797886|ref|YP_004459386.1| - 0.0028 17.8 0.0 0.0044 17.2 0.0 1.4 1 1 0 1 1 1 1 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal Glyoxalase_2 PF12681.7 gi|332797886|ref|YP_004459386.1| - 0.024 14.6 0.1 0.039 13.9 0.1 1.4 1 1 0 1 1 1 0 Glyoxalase-like domain CppA_N PF14506.6 gi|332797886|ref|YP_004459386.1| - 0.031 14.3 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 CppA N-terminal Osmo_CC PF08946.10 gi|332797886|ref|YP_004459386.1| - 0.15 12.3 4.2 0.92 9.8 0.2 2.5 2 0 0 2 2 2 0 Osmosensory transporter coiled coil Glyoxalase_6 PF18029.1 gi|332797886|ref|YP_004459386.1| - 0.15 12.9 0.0 0.23 12.3 0.0 1.2 1 0 0 1 1 1 0 Glyoxalase-like domain ArsA_HSP20 PF17886.1 gi|332797887|ref|YP_004459387.1| - 6.4e-14 51.3 0.0 2.9e-13 49.1 0.0 2.1 2 0 0 2 2 2 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|332797887|ref|YP_004459387.1| - 3.3e-11 43.2 1.7 6e-10 39.2 1.7 2.3 1 1 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.16 gi|332797887|ref|YP_004459387.1| - 9.3e-05 23.4 1.6 0.00015 22.7 0.7 1.8 2 0 0 2 2 2 1 CS domain PIH1_CS PF18201.1 gi|332797887|ref|YP_004459387.1| - 0.00059 20.2 0.1 0.0053 17.1 0.1 2.2 2 1 0 2 2 2 1 PIH1 CS-like domain FHA PF00498.26 gi|332797887|ref|YP_004459387.1| - 0.0035 17.6 0.0 0.042 14.2 0.0 2.2 2 0 0 2 2 2 1 FHA domain GvpH PF05455.11 gi|332797887|ref|YP_004459387.1| - 0.048 13.7 0.0 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 GvpH zf-ZPR1 PF03367.13 gi|332797888|ref|YP_004459388.1| - 4.8e-29 101.3 0.0 1.4e-28 99.7 0.0 1.6 1 1 0 1 1 1 1 ZPR1 zinc-finger domain Lar_restr_allev PF14354.6 gi|332797888|ref|YP_004459388.1| - 0.0018 18.6 0.1 0.003 17.9 0.1 1.4 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|332797888|ref|YP_004459388.1| - 0.023 14.2 0.9 0.082 12.4 0.0 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|332797888|ref|YP_004459388.1| - 0.024 14.6 0.2 0.093 12.7 0.2 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|332797888|ref|YP_004459388.1| - 0.082 13.4 1.8 4.6 7.9 0.1 2.4 2 0 0 2 2 2 0 Zinc-finger double domain zf-RRN7 PF11781.8 gi|332797888|ref|YP_004459388.1| - 1.7 8.4 4.8 2.3 8.0 0.0 2.6 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 GTP_EFTU PF00009.27 gi|332797889|ref|YP_004459389.1| - 2.6e-20 72.8 1.1 3e-20 72.6 0.0 1.6 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|332797889|ref|YP_004459389.1| - 2.3e-09 37.5 1.9 4.7e-09 36.5 0.4 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|332797889|ref|YP_004459389.1| - 9.3e-07 29.1 0.8 3.7e-06 27.2 0.8 2.1 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain MMR_HSR1 PF01926.23 gi|332797889|ref|YP_004459389.1| - 0.0002 21.4 0.0 0.00067 19.7 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|332797889|ref|YP_004459389.1| - 0.0021 18.0 0.5 2 8.3 0.0 2.6 2 0 0 2 2 2 2 RsgA GTPase AlbA_2 PF04326.14 gi|332797889|ref|YP_004459389.1| - 0.017 15.4 0.7 0.14 12.5 0.2 2.4 2 0 0 2 2 2 0 Putative DNA-binding domain KH_2 PF07650.17 gi|332797889|ref|YP_004459389.1| - 0.21 11.4 3.7 1 9.2 3.7 2.2 1 0 0 1 1 1 0 KH domain COXG PF06240.13 gi|332797890|ref|YP_004459390.1| - 2.5e-16 59.7 0.8 2.8e-16 59.5 0.8 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) DUF3211 PF11485.8 gi|332797890|ref|YP_004459390.1| - 0.005 17.1 0.9 0.0075 16.5 0.8 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3211) Neurexophilin PF06312.12 gi|332797890|ref|YP_004459390.1| - 0.03 13.8 0.3 0.033 13.7 0.3 1.1 1 0 0 1 1 1 0 Neurexophilin COXG PF06240.13 gi|332797891|ref|YP_004459391.1| - 5e-36 123.5 1.0 5.6e-36 123.4 1.0 1.0 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) NTP_transf_3 PF12804.7 gi|332797892|ref|YP_004459392.1| - 2.4e-35 122.2 0.0 3.1e-35 121.9 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|332797892|ref|YP_004459392.1| - 7.6e-06 25.8 0.0 1.2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CTP_transf_3 PF02348.19 gi|332797892|ref|YP_004459392.1| - 1.9e-05 24.7 0.0 2.7e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase CofC PF01983.16 gi|332797892|ref|YP_004459392.1| - 0.0043 16.3 0.1 0.0057 15.9 0.1 1.4 1 1 0 1 1 1 1 Guanylyl transferase CofC like NTP_transferase PF00483.23 gi|332797892|ref|YP_004459392.1| - 0.058 13.0 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Nucleotidyl transferase Fer2_2 PF01799.20 gi|332797893|ref|YP_004459393.1| - 3.6e-34 116.6 1.2 2.1e-33 114.1 0.0 2.0 2 0 0 2 2 2 1 [2Fe-2S] binding domain Fer2 PF00111.27 gi|332797893|ref|YP_004459393.1| - 2.9e-07 30.3 0.5 2.9e-07 30.3 0.5 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|332797893|ref|YP_004459393.1| - 6.5e-05 22.9 1.2 0.00014 21.9 1.2 1.6 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain FAD_binding_5 PF00941.21 gi|332797894|ref|YP_004459394.1| - 1.3e-46 158.5 0.0 1.8e-46 158.0 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain in molybdopterin dehydrogenase CO_deh_flav_C PF03450.17 gi|332797894|ref|YP_004459394.1| - 1e-23 83.4 0.1 1.6e-23 82.8 0.1 1.3 1 0 0 1 1 1 1 CO dehydrogenase flavoprotein C-terminal domain FAD_binding_4 PF01565.23 gi|332797894|ref|YP_004459394.1| - 0.021 14.6 0.0 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 FAD binding domain YHS PF04945.13 gi|332797895|ref|YP_004459395.1| - 2.7e-17 62.6 3.9 2.8e-17 62.5 3.9 1.0 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.10 gi|332797895|ref|YP_004459395.1| - 1e-05 25.7 3.2 1.3e-05 25.4 3.2 1.1 1 0 0 1 1 1 1 Archaeal TRASH domain zf-FCS PF06467.14 gi|332797895|ref|YP_004459395.1| - 0.00079 19.3 1.4 0.0011 18.9 1.4 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif FAP206 PF12018.8 gi|332797895|ref|YP_004459395.1| - 0.0077 15.8 0.3 0.0089 15.6 0.3 1.0 1 0 0 1 1 1 1 Domain of unknown function VATC PF18716.1 gi|332797895|ref|YP_004459395.1| - 0.04 13.8 0.6 0.05 13.5 0.6 1.3 1 0 0 1 1 1 0 Vms1-associating treble clef domain TP_methylase PF00590.20 gi|332797896|ref|YP_004459396.1| - 2.9e-46 158.1 0.0 3.4e-46 157.9 0.0 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Hydrolase_6 PF13344.6 gi|332797896|ref|YP_004459396.1| - 0.022 14.9 0.1 0.14 12.3 0.0 2.2 3 0 0 3 3 3 0 Haloacid dehalogenase-like hydrolase DUF1404 PF07185.11 gi|332797897|ref|YP_004459397.1| - 6.3e-07 29.3 13.2 1e-06 28.6 13.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1404) DUF1949 PF09186.11 gi|332797898|ref|YP_004459398.1| - 0.14 12.1 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1949) SIS PF01380.22 gi|332797899|ref|YP_004459399.1| - 4.7e-16 58.8 0.0 4.8e-08 32.9 0.0 2.6 2 1 0 2 2 2 2 SIS domain Amidohydro_1 PF01979.20 gi|332797900|ref|YP_004459400.1| - 0.0028 17.0 0.0 0.12 11.7 0.0 2.1 2 0 0 2 2 2 2 Amidohydrolase family PTH2 PF01981.16 gi|332797900|ref|YP_004459400.1| - 0.098 13.0 0.0 0.22 11.8 0.0 1.6 1 1 0 1 1 1 0 Peptidyl-tRNA hydrolase PTH2 Met_10 PF02475.16 gi|332797901|ref|YP_004459401.1| - 1.1e-47 162.4 0.0 1.4e-47 162.0 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein PrmA PF06325.13 gi|332797901|ref|YP_004459401.1| - 2.8e-05 23.7 0.0 3.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|332797901|ref|YP_004459401.1| - 0.16 11.5 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Gln-synt_C PF00120.24 gi|332797902|ref|YP_004459402.1| - 1.1e-76 258.1 0.0 3.1e-76 256.6 0.0 1.6 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|332797902|ref|YP_004459402.1| - 3.7e-05 23.5 0.0 7.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|332797902|ref|YP_004459402.1| - 0.0061 16.3 0.0 0.064 13.0 0.0 2.3 1 1 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain ADH_N PF08240.12 gi|332797903|ref|YP_004459403.1| - 2e-30 104.9 0.2 2.9e-30 104.3 0.2 1.2 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|332797903|ref|YP_004459403.1| - 2.1e-18 66.5 0.0 3.4e-18 65.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|332797903|ref|YP_004459403.1| - 9.9e-13 49.3 0.0 1.6e-12 48.6 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TrkA_N PF02254.18 gi|332797903|ref|YP_004459403.1| - 0.00045 20.5 0.1 0.0011 19.2 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain AlaDh_PNT_C PF01262.21 gi|332797903|ref|YP_004459403.1| - 0.0016 17.8 0.1 0.0025 17.1 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.20 gi|332797903|ref|YP_004459403.1| - 0.018 15.1 0.1 0.032 14.3 0.1 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|332797903|ref|YP_004459403.1| - 0.056 13.3 0.0 0.086 12.7 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF3719 PF12516.8 gi|332797903|ref|YP_004459403.1| - 0.14 11.9 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3719) RTC PF01137.21 gi|332797904|ref|YP_004459404.1| - 8.5e-70 234.4 0.1 1e-69 234.2 0.1 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|332797904|ref|YP_004459404.1| - 2.2e-21 76.3 0.3 4.8e-21 75.2 0.3 1.6 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain IMS PF00817.20 gi|332797906|ref|YP_004459406.1| - 6.3e-45 152.8 0.5 2.1e-44 151.1 0.1 2.0 2 1 1 3 3 3 1 impB/mucB/samB family IMS_HHH PF11798.8 gi|332797906|ref|YP_004459406.1| - 0.00021 21.4 0.0 0.00073 19.7 0.0 2.0 1 0 0 1 1 1 1 IMS family HHH motif UPF0113_N PF17833.1 gi|332797906|ref|YP_004459406.1| - 0.014 16.0 2.9 0.015 15.8 0.5 2.4 2 1 0 2 2 2 0 UPF0113 Pre-PUA domain DUF1805 PF08827.11 gi|332797906|ref|YP_004459406.1| - 0.037 14.4 0.1 0.32 11.3 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF1805) BAF PF02961.14 gi|332797906|ref|YP_004459406.1| - 0.068 13.6 0.0 1 9.8 0.0 2.5 2 0 0 2 2 2 0 Barrier to autointegration factor TBPIP_N PF15517.6 gi|332797906|ref|YP_004459406.1| - 0.069 13.2 0.8 1.2 9.3 0.1 2.6 1 1 1 2 2 2 0 TBP-interacting protein N-terminus Cdd1 PF11731.8 gi|332797906|ref|YP_004459406.1| - 0.16 12.2 0.0 0.64 10.3 0.0 2.0 1 1 1 2 2 2 0 Pathogenicity locus YpjP PF14005.6 gi|332797906|ref|YP_004459406.1| - 1.1 9.4 5.3 0.69 10.0 0.5 2.5 2 2 0 2 2 2 0 YpjP-like protein PfkB PF00294.24 gi|332797907|ref|YP_004459407.1| - 6.8e-31 107.7 0.1 5.7e-18 65.2 0.4 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase Orthopox_F8 PF05886.11 gi|332797907|ref|YP_004459407.1| - 0.048 13.8 0.1 0.11 12.6 0.1 1.6 1 0 0 1 1 1 0 Orthopoxvirus F8 protein TIP49 PF06068.13 gi|332797908|ref|YP_004459408.1| - 5.6e-139 463.2 1.8 7e-139 462.9 1.8 1.1 1 0 0 1 1 1 1 TIP49 P-loop domain TIP49_C PF17856.1 gi|332797908|ref|YP_004459408.1| - 3.4e-23 81.6 0.1 9.4e-22 76.9 0.1 2.9 3 0 0 3 3 3 1 TIP49 AAA-lid domain AAA PF00004.29 gi|332797908|ref|YP_004459408.1| - 7.6e-12 45.8 1.6 6.3e-08 33.1 0.1 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|332797908|ref|YP_004459408.1| - 2.5e-08 33.8 0.4 1.7e-06 27.9 0.1 2.5 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|332797908|ref|YP_004459408.1| - 8.3e-07 29.4 0.4 0.0072 16.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|332797908|ref|YP_004459408.1| - 8.4e-07 29.5 1.8 9e-06 26.2 1.8 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.14 gi|332797908|ref|YP_004459408.1| - 1.2e-05 25.4 0.4 0.00031 20.8 0.1 2.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|332797908|ref|YP_004459408.1| - 5.8e-05 22.7 0.3 0.0012 18.4 0.1 2.1 2 0 0 2 2 2 1 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|332797908|ref|YP_004459408.1| - 0.00012 21.9 0.2 0.0012 18.6 0.1 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_2 PF07724.14 gi|332797908|ref|YP_004459408.1| - 0.00035 20.7 0.1 0.0011 19.2 0.1 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|332797908|ref|YP_004459408.1| - 0.00061 19.6 0.1 0.0013 18.5 0.1 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|332797908|ref|YP_004459408.1| - 0.0008 18.8 1.0 0.0046 16.4 0.3 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|332797908|ref|YP_004459408.1| - 0.0013 19.2 0.1 0.0031 18.0 0.1 1.6 1 0 0 1 1 1 1 ABC transporter ResIII PF04851.15 gi|332797908|ref|YP_004459408.1| - 0.0035 17.4 0.3 0.32 11.0 0.0 2.6 3 0 0 3 3 2 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|332797908|ref|YP_004459408.1| - 0.0039 16.8 1.0 0.013 15.1 0.4 2.0 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|332797908|ref|YP_004459408.1| - 0.005 17.4 0.0 0.015 15.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|332797908|ref|YP_004459408.1| - 0.006 16.5 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|332797908|ref|YP_004459408.1| - 0.0077 16.4 0.0 0.014 15.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain PhoH PF02562.16 gi|332797908|ref|YP_004459408.1| - 0.0094 15.4 0.2 0.02 14.4 0.2 1.5 1 0 0 1 1 1 1 PhoH-like protein DUF815 PF05673.13 gi|332797908|ref|YP_004459408.1| - 0.0098 15.1 0.1 0.02 14.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) DnaB_C PF03796.15 gi|332797908|ref|YP_004459408.1| - 0.011 15.1 0.5 0.022 14.1 0.1 1.7 2 0 0 2 2 2 0 DnaB-like helicase C terminal domain TsaE PF02367.17 gi|332797908|ref|YP_004459408.1| - 0.02 14.9 0.2 0.047 13.7 0.2 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|332797908|ref|YP_004459408.1| - 0.021 14.9 0.2 0.26 11.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|332797908|ref|YP_004459408.1| - 0.022 14.7 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Cytidylate_kin PF02224.18 gi|332797908|ref|YP_004459408.1| - 0.025 14.3 0.3 0.2 11.3 0.0 2.5 3 0 0 3 3 3 0 Cytidylate kinase AAA_19 PF13245.6 gi|332797908|ref|YP_004459408.1| - 0.028 14.8 2.3 0.88 9.9 2.3 2.3 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|332797908|ref|YP_004459408.1| - 0.035 14.5 0.0 0.075 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_28 PF13521.6 gi|332797908|ref|YP_004459408.1| - 0.05 13.8 0.3 0.34 11.2 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_PrkA PF08298.11 gi|332797908|ref|YP_004459408.1| - 0.06 12.3 0.0 0.097 11.6 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_lid_4 PF17864.1 gi|332797908|ref|YP_004459408.1| - 0.064 13.0 0.2 0.24 11.2 0.1 2.0 2 0 0 2 2 2 0 RuvB AAA lid domain IPT PF01745.16 gi|332797908|ref|YP_004459408.1| - 0.084 12.3 0.1 0.17 11.3 0.1 1.4 1 0 0 1 1 1 0 Isopentenyl transferase DNA_pol3_delta PF06144.13 gi|332797908|ref|YP_004459408.1| - 0.093 12.5 0.0 0.22 11.3 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase III, delta subunit DNA_pol3_delta2 PF13177.6 gi|332797908|ref|YP_004459408.1| - 0.12 12.1 0.0 1.3 8.8 0.0 2.4 2 1 0 2 2 2 0 DNA polymerase III, delta subunit AAA_29 PF13555.6 gi|332797908|ref|YP_004459408.1| - 0.12 12.1 0.1 0.26 11.0 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain PepSY PF03413.19 gi|332797908|ref|YP_004459408.1| - 0.15 12.6 0.7 14 6.3 0.1 2.9 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain T2SSE PF00437.20 gi|332797908|ref|YP_004459408.1| - 0.18 10.8 4.2 0.54 9.3 0.2 2.4 2 1 1 3 3 3 0 Type II/IV secretion system protein AAA_17 PF13207.6 gi|332797908|ref|YP_004459408.1| - 0.23 11.9 2.2 0.3 11.5 0.1 2.3 3 1 0 3 3 1 0 AAA domain NUDIX PF00293.28 gi|332797909|ref|YP_004459409.1| - 8.1e-20 71.2 0.0 1e-19 70.9 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.6 gi|332797909|ref|YP_004459409.1| - 0.028 14.4 0.0 0.044 13.8 0.0 1.4 1 1 0 1 1 1 0 NUDIX domain FAD_binding_2 PF00890.24 gi|332797910|ref|YP_004459410.1| - 1.7e-74 251.4 0.0 2e-74 251.1 0.0 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|332797910|ref|YP_004459410.1| - 1.7e-10 41.1 1.3 2.2e-08 34.1 1.3 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.20 gi|332797910|ref|YP_004459410.1| - 2.6e-10 40.4 0.0 3.5e-08 33.5 0.0 2.3 1 1 0 1 1 1 1 Fumarate reductase flavoprotein C-term GIDA PF01134.22 gi|332797910|ref|YP_004459410.1| - 9.1e-10 38.2 2.5 4.2e-05 22.8 0.0 3.0 3 0 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|332797910|ref|YP_004459410.1| - 2e-09 37.1 1.8 2.4e-06 27.0 0.8 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332797910|ref|YP_004459410.1| - 5.1e-08 32.0 0.8 0.0004 19.2 0.0 3.0 3 0 0 3 3 3 2 HI0933-like protein NAD_binding_9 PF13454.6 gi|332797910|ref|YP_004459410.1| - 0.00012 22.1 0.0 0.13 12.3 0.0 3.1 3 0 0 3 3 3 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|332797910|ref|YP_004459410.1| - 0.00036 19.9 0.2 0.12 11.6 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797910|ref|YP_004459410.1| - 0.0041 17.6 0.4 0.75 10.4 0.2 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|332797910|ref|YP_004459410.1| - 0.0042 17.3 1.6 0.01 16.1 1.6 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|332797910|ref|YP_004459410.1| - 0.019 14.2 0.9 0.033 13.4 0.9 1.4 1 0 0 1 1 1 0 Thi4 family SBP_bac_11 PF13531.6 gi|332797911|ref|YP_004459411.1| - 1.3e-07 31.6 0.0 1.9e-07 31.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_3 PF00497.20 gi|332797911|ref|YP_004459411.1| - 0.027 13.9 0.0 0.074 12.5 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.11 gi|332797911|ref|YP_004459411.1| - 0.08 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 NMT1/THI5 like DUF3834 PF12916.7 gi|332797912|ref|YP_004459412.1| - 8.8e-76 253.6 1.1 1e-75 253.4 1.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3834) SBP_bac_3 PF00497.20 gi|332797912|ref|YP_004459412.1| - 0.04 13.3 0.1 0.16 11.4 0.0 1.9 2 0 0 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 MFS_1 PF07690.16 gi|332797913|ref|YP_004459413.1| - 2.9e-31 108.7 42.6 1.6e-18 66.8 24.0 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_3 PF05977.13 gi|332797913|ref|YP_004459413.1| - 3.9e-06 25.5 1.7 3.9e-06 25.5 1.7 1.9 2 0 0 2 2 2 1 Transmembrane secretion effector MS_channel PF00924.18 gi|332797915|ref|YP_004459415.1| - 1.1e-21 77.4 4.5 1.1e-21 77.4 4.5 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Condensation PF00668.20 gi|332797915|ref|YP_004459415.1| - 0.066 11.9 0.1 0.091 11.4 0.1 1.1 1 0 0 1 1 1 0 Condensation domain DUF5423 PF17461.2 gi|332797915|ref|YP_004459415.1| - 5.4 5.8 7.6 8.1 5.2 7.6 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5423) OsmC PF02566.19 gi|332797916|ref|YP_004459416.1| - 0.027 15.0 0.0 0.036 14.5 0.0 1.2 1 0 0 1 1 1 0 OsmC-like protein NPCBM_assoc PF10633.9 gi|332797917|ref|YP_004459417.1| - 1.7e-13 50.6 1.2 0.0093 16.2 0.0 7.3 7 2 0 7 7 7 3 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|332797917|ref|YP_004459417.1| - 4.7e-06 26.8 17.8 0.2 11.9 0.3 5.5 5 2 0 5 5 5 4 CARDB TRAP_beta PF05753.14 gi|332797917|ref|YP_004459417.1| - 0.00015 21.2 9.2 0.035 13.5 0.4 4.8 5 0 0 5 5 5 2 Translocon-associated protein beta (TRAPB) DUF11 PF01345.18 gi|332797917|ref|YP_004459417.1| - 0.39 11.0 11.7 0.36 11.2 0.5 4.6 4 2 0 4 4 4 0 Domain of unknown function DUF11 TrmB PF01978.19 gi|332797918|ref|YP_004459418.1| - 2.7e-06 27.2 0.2 5.2e-06 26.3 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|332797918|ref|YP_004459418.1| - 2.2e-05 23.9 1.2 0.0001 21.8 1.1 2.2 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|332797918|ref|YP_004459418.1| - 2.4e-05 24.0 0.0 4.5e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_8 PF02954.19 gi|332797918|ref|YP_004459418.1| - 0.00059 19.6 0.0 0.00096 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, Fis family HTH_AsnC-type PF13404.6 gi|332797918|ref|YP_004459418.1| - 0.0008 19.2 0.1 0.003 17.3 0.1 2.0 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|332797918|ref|YP_004459418.1| - 0.014 15.4 0.0 0.023 14.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|332797918|ref|YP_004459418.1| - 0.019 14.9 0.0 0.053 13.5 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|332797918|ref|YP_004459418.1| - 0.02 15.0 0.0 0.033 14.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|332797918|ref|YP_004459418.1| - 0.023 14.9 0.5 0.062 13.5 0.0 1.8 1 1 1 2 2 2 0 Ferric uptake regulator family eIF2A PF08662.11 gi|332797918|ref|YP_004459418.1| - 0.023 14.6 0.7 0.13 12.2 0.3 2.0 2 0 0 2 2 2 0 Eukaryotic translation initiation factor eIF2A HTH_43 PF09904.9 gi|332797918|ref|YP_004459418.1| - 0.047 13.6 0.0 0.11 12.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MarR PF01047.22 gi|332797918|ref|YP_004459418.1| - 0.052 13.5 0.0 0.15 12.0 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_6 PF01418.17 gi|332797918|ref|YP_004459418.1| - 0.053 13.5 0.1 0.093 12.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family MarR_2 PF12802.7 gi|332797918|ref|YP_004459418.1| - 0.15 12.0 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|332797918|ref|YP_004459418.1| - 0.16 12.0 0.1 0.36 10.8 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Deltameth_res PF16020.5 gi|332797918|ref|YP_004459418.1| - 2.1 8.3 4.9 0.32 10.9 0.5 1.9 2 0 0 2 2 2 0 Deltamethrin resistance PaREP1 PF05942.11 gi|332797919|ref|YP_004459419.1| - 0.00038 20.3 0.1 0.0011 18.8 0.1 1.8 1 1 0 1 1 1 1 Archaeal PaREP1/PaREP8 family CRS1_YhbY PF01985.21 gi|332797919|ref|YP_004459419.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.3 1 0 0 1 1 1 0 CRS1 / YhbY (CRM) domain AA_permease_2 PF13520.6 gi|332797920|ref|YP_004459420.1| - 5.2e-05 22.3 60.6 0.00057 18.8 60.5 2.1 1 1 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|332797920|ref|YP_004459420.1| - 5.9e-05 21.8 57.9 0.0017 17.0 57.5 2.2 1 1 0 1 1 1 1 Amino acid permease AAA_assoc_C PF09821.9 gi|332797922|ref|YP_004459422.1| - 4.5e-31 107.8 0.1 6.9e-31 107.3 0.1 1.3 2 0 0 2 2 2 1 C-terminal AAA-associated domain DUF956 PF06115.11 gi|332797922|ref|YP_004459422.1| - 0.071 12.8 0.1 0.13 12.0 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF956) Telomere_Sde2_2 PF13297.6 gi|332797922|ref|YP_004459422.1| - 0.11 12.2 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 Telomere stability C-terminal VIT1 PF01988.19 gi|332797923|ref|YP_004459423.1| - 3.2e-45 154.6 0.2 3.7e-45 154.4 0.2 1.0 1 0 0 1 1 1 1 VIT family SLATT_1 PF18181.1 gi|332797923|ref|YP_004459423.1| - 0.15 12.0 0.0 0.58 10.1 0.0 2.0 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Lactamase_B PF00753.27 gi|332797924|ref|YP_004459424.1| - 1.5e-07 31.6 0.7 4.5e-05 23.5 0.2 2.2 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|332797924|ref|YP_004459424.1| - 7.8e-06 25.9 0.1 1.3e-05 25.1 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|332797924|ref|YP_004459424.1| - 6.9e-05 22.4 0.2 0.00018 21.1 0.1 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain DHH PF01368.20 gi|332797924|ref|YP_004459424.1| - 0.032 14.5 0.1 0.62 10.3 0.0 2.3 2 0 0 2 2 2 0 DHH family Methyltransf_31 PF13847.6 gi|332797924|ref|YP_004459424.1| - 0.072 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain ResIII PF04851.15 gi|332797925|ref|YP_004459425.1| - 1.3e-23 83.8 0.6 5.5e-23 81.8 0.0 2.4 3 1 0 3 3 3 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|332797925|ref|YP_004459425.1| - 6.1e-21 74.8 0.7 2e-20 73.0 0.2 2.0 3 0 0 3 3 3 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|332797925|ref|YP_004459425.1| - 7.5e-19 68.1 0.8 1.5e-17 63.9 0.1 2.7 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|332797925|ref|YP_004459425.1| - 5.9e-11 42.1 0.2 1.4e-10 40.9 0.2 1.7 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|332797925|ref|YP_004459425.1| - 6.1e-10 39.1 0.0 4.5e-09 36.3 0.0 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|332797925|ref|YP_004459425.1| - 7.6e-09 34.7 0.9 0.00011 21.0 0.0 3.4 1 1 2 3 3 3 2 SNF2 family N-terminal domain Helicase_C_2 PF13307.6 gi|332797925|ref|YP_004459425.1| - 0.00053 20.2 0.5 0.093 12.9 0.1 3.5 3 1 0 3 3 3 1 Helicase C-terminal domain DUF2075 PF09848.9 gi|332797925|ref|YP_004459425.1| - 0.015 14.6 0.0 0.063 12.5 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) FTA4 PF13093.6 gi|332797925|ref|YP_004459425.1| - 0.67 9.8 4.2 0.62 9.9 0.9 2.1 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF790 PF05626.11 gi|332797926|ref|YP_004459426.1| - 1.3e-119 399.5 5.4 1.6e-119 399.1 5.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) Thioredoxin_15 PF18403.1 gi|332797926|ref|YP_004459426.1| - 0.022 14.7 0.6 0.29 11.0 0.0 2.5 2 1 1 3 3 3 0 Thioredoxin-like domain HTH_11 PF08279.12 gi|332797926|ref|YP_004459426.1| - 0.05 13.6 0.1 0.18 11.8 0.1 2.0 1 0 0 1 1 1 0 HTH domain HAD_2 PF13419.6 gi|332797927|ref|YP_004459427.1| - 2.9e-20 73.1 0.0 4.3e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|332797927|ref|YP_004459427.1| - 6.3e-12 46.2 0.1 1.1e-11 45.5 0.1 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|332797927|ref|YP_004459427.1| - 4.6e-05 23.4 0.0 0.00013 22.0 0.0 1.8 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.7 gi|332797927|ref|YP_004459427.1| - 0.0042 17.5 0.0 0.0058 17.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|332797928|ref|YP_004459428.1| - 1.7e-14 54.6 0.0 8.2e-14 52.3 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.19 gi|332797928|ref|YP_004459428.1| - 0.02 14.9 0.0 0.047 13.7 0.0 1.6 1 0 0 1 1 1 0 B12 binding domain 7kD_DNA_binding PF02294.18 gi|332797929|ref|YP_004459429.1| - 1.5e-39 133.8 5.7 1.7e-39 133.7 5.7 1.0 1 0 0 1 1 1 1 7kD DNA-binding domain DUF2960 PF11173.8 gi|332797929|ref|YP_004459429.1| - 0.032 14.7 0.3 0.11 13.0 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2960) ATP-cone PF03477.16 gi|332797930|ref|YP_004459430.1| - 5.6e-06 26.8 0.6 6.8e-06 26.6 0.6 1.1 1 0 0 1 1 1 1 ATP cone domain Sigma70_r4_2 PF08281.12 gi|332797931|ref|YP_004459431.1| - 0.0005 19.7 0.1 0.0005 19.7 0.1 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|332797931|ref|YP_004459431.1| - 0.0013 18.7 0.2 0.0027 17.7 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|332797931|ref|YP_004459431.1| - 0.0061 16.1 0.2 0.02 14.5 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|332797931|ref|YP_004459431.1| - 0.017 14.7 0.0 0.028 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_37 PF13744.6 gi|332797931|ref|YP_004459431.1| - 0.017 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|332797931|ref|YP_004459431.1| - 0.024 14.4 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Terminase_5 PF06056.12 gi|332797931|ref|YP_004459431.1| - 0.029 14.3 0.0 0.041 13.8 0.0 1.2 1 0 0 1 1 1 0 Putative ATPase subunit of terminase (gpP-like) TnsD PF15978.5 gi|332797931|ref|YP_004459431.1| - 0.034 13.1 0.0 0.065 12.2 0.0 1.5 1 1 0 1 1 1 0 Tn7-like transposition protein D HTH_31 PF13560.6 gi|332797931|ref|YP_004459431.1| - 0.085 13.2 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|332797931|ref|YP_004459431.1| - 0.095 12.5 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|332797931|ref|YP_004459431.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Acetyltransf_1 PF00583.25 gi|332797932|ref|YP_004459432.1| - 2e-14 53.9 0.0 2.4e-14 53.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|332797932|ref|YP_004459432.1| - 2.3e-09 37.3 0.0 2.7e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|332797932|ref|YP_004459432.1| - 3.7e-09 37.4 0.0 4.4e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|332797932|ref|YP_004459432.1| - 7.4e-09 35.5 0.0 1.1e-08 34.9 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|332797932|ref|YP_004459432.1| - 1.2e-08 35.3 0.0 1.9e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|332797932|ref|YP_004459432.1| - 0.0013 18.9 0.0 0.0018 18.4 0.0 1.3 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|332797932|ref|YP_004459432.1| - 0.026 14.6 0.0 0.77 9.8 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3626 PF12294.8 gi|332797932|ref|YP_004459432.1| - 0.044 12.8 0.0 0.051 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3626) Acetyltransf_4 PF13420.7 gi|332797932|ref|YP_004459432.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|332797932|ref|YP_004459432.1| - 0.18 12.0 0.0 0.28 11.3 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|332797932|ref|YP_004459432.1| - 0.19 11.7 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|332797932|ref|YP_004459432.1| - 0.21 11.3 0.0 0.48 10.2 0.0 1.6 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ PK PF00224.21 gi|332797933|ref|YP_004459433.1| - 8.1e-85 284.8 3.2 1.2e-84 284.2 3.2 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|332797933|ref|YP_004459433.1| - 6.9e-25 87.6 0.2 2.9e-24 85.5 0.0 2.2 3 0 0 3 3 3 1 Pyruvate kinase, alpha/beta domain HpcH_HpaI PF03328.14 gi|332797933|ref|YP_004459433.1| - 0.0046 16.1 0.1 0.013 14.6 0.1 1.7 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Radical_SAM PF04055.21 gi|332797933|ref|YP_004459433.1| - 0.17 12.2 0.1 6.6 7.1 0.0 3.1 3 1 0 3 3 3 0 Radical SAM superfamily DUF1955 PF09205.10 gi|332797934|ref|YP_004459434.1| - 2.4e-71 238.6 9.9 2.7e-71 238.5 9.9 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1955) PPR PF01535.20 gi|332797934|ref|YP_004459434.1| - 0.036 14.3 0.5 9.2 6.8 0.0 3.5 3 0 0 3 3 3 0 PPR repeat TPR_2 PF07719.17 gi|332797934|ref|YP_004459434.1| - 0.14 12.4 1.2 0.35 11.1 0.5 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat DAO PF01266.24 gi|332797935|ref|YP_004459435.1| - 5.8e-41 141.2 0.0 6.9e-41 141.0 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|332797935|ref|YP_004459435.1| - 9.7e-08 32.1 0.0 2.1e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|332797935|ref|YP_004459435.1| - 0.00047 19.1 0.1 0.0032 16.4 0.0 2.0 2 0 0 2 2 2 1 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|332797935|ref|YP_004459435.1| - 0.0016 17.7 0.0 0.0023 17.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|332797935|ref|YP_004459435.1| - 0.0039 17.7 0.4 0.0095 16.5 0.1 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|332797935|ref|YP_004459435.1| - 0.0041 16.4 0.0 0.0064 15.7 0.0 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|332797935|ref|YP_004459435.1| - 0.017 14.2 0.0 0.025 13.7 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|332797935|ref|YP_004459435.1| - 0.025 13.3 0.1 0.042 12.6 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein ApbA PF02558.16 gi|332797935|ref|YP_004459435.1| - 0.069 12.8 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|332797935|ref|YP_004459435.1| - 0.081 12.1 0.1 0.13 11.5 0.1 1.3 1 0 0 1 1 1 0 Thi4 family Flavodoxin_5 PF12724.7 gi|332797935|ref|YP_004459435.1| - 0.095 12.9 0.0 0.41 10.9 0.0 1.9 1 1 1 2 2 2 0 Flavodoxin domain NAD_binding_9 PF13454.6 gi|332797935|ref|YP_004459435.1| - 0.11 12.4 0.0 0.42 10.6 0.0 1.8 2 0 0 2 2 2 0 FAD-NAD(P)-binding ThiS PF02597.20 gi|332797937|ref|YP_004459437.1| - 2.4e-06 28.1 0.0 2.7e-06 27.9 0.0 1.1 1 0 0 1 1 1 1 ThiS family ThiS-like PF14453.6 gi|332797937|ref|YP_004459437.1| - 0.02 14.9 0.1 0.029 14.4 0.1 1.3 1 0 0 1 1 1 0 ThiS-like ubiquitin Glycos_transf_1 PF00534.20 gi|332797939|ref|YP_004459439.1| - 1.5e-28 99.5 0.0 2.4e-28 98.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.11 gi|332797939|ref|YP_004459439.1| - 4.9e-28 98.5 0.0 7.3e-28 97.9 0.0 1.2 1 0 0 1 1 1 1 Starch synthase catalytic domain Glyco_trans_1_4 PF13692.6 gi|332797939|ref|YP_004459439.1| - 1.4e-21 77.3 0.0 3e-21 76.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|332797939|ref|YP_004459439.1| - 2.8e-09 37.2 0.2 0.0027 17.7 0.1 2.4 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|332797939|ref|YP_004459439.1| - 3.4e-05 24.3 0.0 9.4e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|332797939|ref|YP_004459439.1| - 0.033 14.6 0.0 0.59 10.6 0.0 2.3 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glyco_hydro_57 PF03065.15 gi|332797940|ref|YP_004459440.1| - 3.6e-78 263.0 4.1 5.7e-78 262.4 4.1 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 57 Polysacc_deac_1 PF01522.21 gi|332797940|ref|YP_004459440.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase NTP_transferase PF00483.23 gi|332797941|ref|YP_004459441.1| - 1.3e-40 139.6 0.0 1.7e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase Hexapep PF00132.24 gi|332797941|ref|YP_004459441.1| - 2.2e-09 36.7 19.1 0.0021 17.7 1.0 4.6 2 2 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) DUF4954 PF16314.5 gi|332797941|ref|YP_004459441.1| - 1.4e-08 33.4 7.4 2.3e-08 32.7 7.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4954) Fucokinase PF07959.12 gi|332797941|ref|YP_004459441.1| - 0.025 13.5 5.8 0.31 9.9 5.9 2.1 1 1 0 1 1 1 0 L-fucokinase CPSF100_C PF13299.6 gi|332797941|ref|YP_004459441.1| - 0.062 13.5 0.5 8.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Cleavage and polyadenylation factor 2 C-terminal Hexapep_2 PF14602.6 gi|332797941|ref|YP_004459441.1| - 4.5 7.1 11.0 12 5.8 0.5 4.1 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase Glyco_hydro_15 PF00723.21 gi|332797942|ref|YP_004459442.1| - 4.2e-13 48.9 1.7 7.9e-08 31.5 2.1 3.6 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 Ribosomal_S6 PF01250.17 gi|332797942|ref|YP_004459442.1| - 0.12 12.7 0.1 0.31 11.4 0.1 1.6 1 0 0 1 1 1 0 Ribosomal protein S6 DUF3925 PF13063.6 gi|332797942|ref|YP_004459442.1| - 0.14 12.4 0.0 0.38 11.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3925) GDE_C PF06202.14 gi|332797943|ref|YP_004459443.1| - 5.6e-110 367.9 0.0 7.9e-110 367.4 0.0 1.2 1 0 0 1 1 1 1 Amylo-alpha-1,6-glucosidase GDE_N PF12439.8 gi|332797943|ref|YP_004459443.1| - 1.2e-53 181.8 0.1 1.8e-53 181.2 0.1 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme N terminal DUF608 PF04685.13 gi|332797943|ref|YP_004459443.1| - 0.00057 19.2 0.1 0.0009 18.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyl-hydrolase family 116, catalytic region Bac_rhamnosid6H PF17389.2 gi|332797943|ref|YP_004459443.1| - 0.0071 15.6 0.0 0.01 15.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain Glyco_hydro_100 PF12899.7 gi|332797943|ref|YP_004459443.1| - 0.018 13.7 1.2 0.24 10.0 0.0 2.6 2 1 0 2 2 2 0 Alkaline and neutral invertase AMP-binding_C_2 PF14535.6 gi|332797944|ref|YP_004459444.1| - 9.1e-14 51.5 0.0 1.7e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain AMP-binding PF00501.28 gi|332797944|ref|YP_004459444.1| - 0.013 14.1 0.3 0.04 12.5 0.3 1.6 1 1 0 1 1 1 0 AMP-binding enzyme 3HCDH_N PF02737.18 gi|332797945|ref|YP_004459445.1| - 1.2e-65 220.8 0.1 1.9e-65 220.1 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|332797945|ref|YP_004459445.1| - 1.6e-50 169.7 0.0 5.3e-27 94.3 0.0 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Pyr_redox PF00070.27 gi|332797945|ref|YP_004459445.1| - 0.0021 18.6 0.1 0.0046 17.5 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|332797945|ref|YP_004459445.1| - 0.0024 17.2 0.0 0.0039 16.5 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|332797945|ref|YP_004459445.1| - 0.0026 17.9 0.0 0.005 17.0 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|332797945|ref|YP_004459445.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|332797945|ref|YP_004459445.1| - 0.016 15.8 0.0 0.042 14.4 0.0 1.8 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|332797945|ref|YP_004459445.1| - 0.021 14.8 0.1 0.053 13.5 0.1 1.8 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.18 gi|332797945|ref|YP_004459445.1| - 0.024 14.9 0.0 0.05 13.9 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Abi_HHR PF07815.14 gi|332797945|ref|YP_004459445.1| - 0.06 13.5 0.0 0.33 11.1 0.0 2.2 2 0 0 2 2 2 0 Abl-interactor HHR NAD_binding_8 PF13450.6 gi|332797945|ref|YP_004459445.1| - 0.084 13.1 0.1 0.27 11.5 0.0 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Methyltransf_25 PF13649.6 gi|332797945|ref|YP_004459445.1| - 0.13 13.0 0.0 0.84 10.4 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain ADH_zinc_N PF00107.26 gi|332797946|ref|YP_004459446.1| - 1.5e-31 109.1 0.1 2.7e-31 108.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|332797946|ref|YP_004459446.1| - 1.1e-30 105.7 2.1 1.1e-30 105.7 2.1 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain Glu_dehyd_C PF16912.5 gi|332797946|ref|YP_004459446.1| - 5.5e-09 35.8 0.2 1.2e-08 34.8 0.2 1.5 1 1 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_zinc_N_2 PF13602.6 gi|332797946|ref|YP_004459446.1| - 6.4e-08 33.7 0.0 2.7e-07 31.7 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_3 PF03447.16 gi|332797946|ref|YP_004459446.1| - 0.0058 17.3 0.9 0.011 16.4 0.9 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|332797946|ref|YP_004459446.1| - 0.01 16.1 0.7 0.01 16.1 0.7 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|332797946|ref|YP_004459446.1| - 0.011 16.0 1.4 0.019 15.2 1.4 1.4 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|332797946|ref|YP_004459446.1| - 0.044 13.1 0.2 0.075 12.4 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KR PF08659.10 gi|332797946|ref|YP_004459446.1| - 0.075 12.9 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 KR domain CBS PF00571.28 gi|332797947|ref|YP_004459447.1| - 1.1e-30 105.8 2.0 2.2e-15 56.9 0.1 2.1 2 0 0 2 2 2 2 CBS domain GARS_C PF02843.16 gi|332797947|ref|YP_004459447.1| - 0.08 13.2 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, C domain Acetyltransf_10 PF13673.7 gi|332797947|ref|YP_004459447.1| - 0.18 11.7 0.0 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain ADH_N PF08240.12 gi|332797952|ref|YP_004459452.1| - 5.9e-27 93.7 0.1 1.4e-26 92.5 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|332797952|ref|YP_004459452.1| - 8.9e-26 90.4 0.6 1.8e-25 89.4 0.6 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|332797952|ref|YP_004459452.1| - 3.4e-12 47.6 0.1 7.2e-12 46.5 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|332797952|ref|YP_004459452.1| - 8.5e-05 21.9 1.1 0.00017 21.0 1.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain CMAS PF02353.20 gi|332797952|ref|YP_004459452.1| - 0.00062 19.2 0.0 0.00093 18.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase adh_short PF00106.25 gi|332797952|ref|YP_004459452.1| - 0.0013 18.2 0.7 0.0027 17.2 0.7 1.6 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|332797952|ref|YP_004459452.1| - 0.0076 15.7 0.1 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family E1-N PF14463.6 gi|332797952|ref|YP_004459452.1| - 0.013 15.3 0.1 0.028 14.2 0.1 1.6 1 0 0 1 1 1 0 E1 N-terminal domain LDcluster4 PF18306.1 gi|332797952|ref|YP_004459452.1| - 0.016 14.8 0.3 0.035 13.7 0.3 1.6 1 0 0 1 1 1 0 SLOG cluster4 family Eno-Rase_NADH_b PF12242.8 gi|332797952|ref|YP_004459452.1| - 0.027 14.2 0.8 0.12 12.1 0.2 2.1 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NAD_binding_10 PF13460.6 gi|332797952|ref|YP_004459452.1| - 0.033 14.1 0.4 0.052 13.4 0.4 1.3 1 0 0 1 1 1 0 NAD(P)H-binding SIS_2 PF13580.6 gi|332797952|ref|YP_004459452.1| - 0.051 13.6 0.2 0.099 12.7 0.2 1.4 1 0 0 1 1 1 0 SIS domain ELFV_dehydrog PF00208.21 gi|332797952|ref|YP_004459452.1| - 0.054 13.2 0.3 0.087 12.5 0.3 1.3 1 0 0 1 1 1 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 2-Hacid_dh_C PF02826.19 gi|332797952|ref|YP_004459452.1| - 0.14 11.5 0.3 0.22 10.9 0.3 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amidase PF01425.21 gi|332797954|ref|YP_004459454.1| - 3.7e-83 280.0 0.5 5e-66 223.5 0.7 2.0 2 0 0 2 2 2 2 Amidase PEPcase_2 PF14010.6 gi|332797955|ref|YP_004459455.1| - 3.5e-211 702.0 2.9 3.9e-211 701.8 2.9 1.0 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Cofac_haem_bdg PF04187.13 gi|332797955|ref|YP_004459455.1| - 0.2 11.6 0.0 0.38 10.7 0.0 1.4 1 0 0 1 1 1 0 Haem-binding uptake, Tiki superfamily, ChaN AhpC-TSA PF00578.21 gi|332797956|ref|YP_004459456.1| - 2.9e-41 140.2 0.1 3.5e-41 140.0 0.1 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|332797956|ref|YP_004459456.1| - 1.3e-25 89.8 0.1 1.5e-25 89.7 0.1 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|332797956|ref|YP_004459456.1| - 0.00054 20.1 0.0 0.00083 19.5 0.0 1.4 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme Thioredoxin_8 PF13905.6 gi|332797956|ref|YP_004459456.1| - 0.00092 19.5 0.0 0.0014 18.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like DUF899 PF05988.12 gi|332797956|ref|YP_004459456.1| - 0.0014 18.3 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Peptidase_M60 PF13402.6 gi|332797956|ref|YP_004459456.1| - 0.057 12.9 0.0 0.067 12.7 0.0 1.2 1 1 0 1 1 1 0 Peptidase M60, enhancin and enhancin-like Carb_kinase PF01256.17 gi|332797957|ref|YP_004459457.1| - 2.5e-48 164.7 0.0 3.7e-48 164.1 0.0 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|332797957|ref|YP_004459457.1| - 1.6e-43 148.5 0.0 8.6e-43 146.2 0.0 2.1 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|332797957|ref|YP_004459457.1| - 7.8e-09 35.3 0.0 1.6e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|332797957|ref|YP_004459457.1| - 0.0015 18.0 0.0 0.0026 17.2 0.0 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase KR PF08659.10 gi|332797957|ref|YP_004459457.1| - 0.062 13.2 0.2 0.13 12.2 0.0 1.6 2 0 0 2 2 2 0 KR domain TPR_15 PF13429.6 gi|332797958|ref|YP_004459458.1| - 0.018 14.3 3.9 0.083 12.1 0.1 2.3 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF2024 PF09630.10 gi|332797958|ref|YP_004459458.1| - 0.097 12.6 6.6 2.8 7.9 0.5 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF2024) Blo-t-5 PF11642.8 gi|332797958|ref|YP_004459458.1| - 0.38 10.7 8.3 0.98 9.4 0.6 2.8 1 1 2 3 3 3 0 Mite allergen Blo t 5 DUF892 PF05974.12 gi|332797958|ref|YP_004459458.1| - 0.98 9.4 16.7 1.6 8.7 5.2 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF892) Alkyl_sulf_dimr PF14863.6 gi|332797958|ref|YP_004459458.1| - 3.1 8.3 8.6 6.5 7.2 2.2 2.8 1 1 2 3 3 3 0 Alkyl sulfatase dimerisation DUF87 PF01935.17 gi|332797959|ref|YP_004459459.1| - 2.3e-43 148.9 1.0 3.5e-43 148.3 1.0 1.3 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|332797959|ref|YP_004459459.1| - 3e-11 42.6 0.0 1.6e-06 27.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|332797959|ref|YP_004459459.1| - 1.9e-07 31.1 0.1 6.4e-07 29.4 0.1 2.0 1 0 0 1 1 1 1 HAS barrel domain TrwB_AAD_bind PF10412.9 gi|332797959|ref|YP_004459459.1| - 7.5e-05 21.8 0.0 0.00064 18.7 0.0 2.0 2 0 0 2 2 2 1 Type IV secretion-system coupling protein DNA-binding domain FtsK_SpoIIIE PF01580.18 gi|332797959|ref|YP_004459459.1| - 0.00012 21.6 0.0 0.013 14.8 0.0 2.4 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.7 gi|332797959|ref|YP_004459459.1| - 0.004 16.1 0.0 2.2 7.1 0.0 2.3 2 0 0 2 2 2 2 AAA-like domain ResIII PF04851.15 gi|332797959|ref|YP_004459459.1| - 0.045 13.7 0.2 4.5 7.2 0.0 2.4 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit ABC_tran PF00005.27 gi|332797959|ref|YP_004459459.1| - 0.092 13.3 0.1 0.19 12.2 0.1 1.6 1 1 0 1 1 1 0 ABC transporter AAA_22 PF13401.6 gi|332797959|ref|YP_004459459.1| - 0.12 12.6 0.0 10 6.4 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|332797959|ref|YP_004459459.1| - 0.14 12.6 1.0 0.81 10.1 0.0 2.4 1 1 1 2 2 2 0 ATPase family associated with various cellular activities (AAA) Phage_int_SAM_5 PF13102.6 gi|332797959|ref|YP_004459459.1| - 0.15 12.4 0.4 0.73 10.2 0.4 2.0 1 1 1 2 2 2 0 Phage integrase SAM-like domain Metallophos PF00149.28 gi|332797960|ref|YP_004459460.1| - 5.7e-15 56.4 0.2 1e-14 55.5 0.2 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|332797960|ref|YP_004459460.1| - 2.2e-12 47.5 0.0 6.2e-12 46.0 0.0 1.8 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Rad50_zn_hook PF04423.14 gi|332797961|ref|YP_004459461.1| - 3.5e-11 42.8 6.3 3.5e-11 42.8 6.3 10.0 11 0 0 11 11 10 1 Rad50 zinc hook motif AAA_15 PF13175.6 gi|332797961|ref|YP_004459461.1| - 4.9e-11 42.9 128.7 3.8e-05 23.6 70.2 3.6 1 1 2 3 3 2 2 AAA ATPase domain SMC_N PF02463.19 gi|332797961|ref|YP_004459461.1| - 3.8e-09 36.3 2.4 3.8e-09 36.3 2.4 2.9 2 1 0 2 2 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|332797961|ref|YP_004459461.1| - 4.9e-07 29.9 19.3 5.2e-06 26.5 7.6 4.7 1 1 3 5 5 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|332797961|ref|YP_004459461.1| - 0.00013 21.6 0.0 0.0003 20.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|332797961|ref|YP_004459461.1| - 0.00044 20.4 0.0 0.001 19.3 0.0 1.6 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit Occludin_ELL PF07303.13 gi|332797961|ref|YP_004459461.1| - 0.00048 20.8 83.3 0.025 15.3 7.9 7.9 3 3 5 8 8 8 4 Occludin homology domain MscS_porin PF12795.7 gi|332797961|ref|YP_004459461.1| - 0.00081 19.0 6.2 0.00081 19.0 6.2 5.0 4 1 0 4 4 4 2 Mechanosensitive ion channel porin domain Baculo_PEP_C PF04513.12 gi|332797961|ref|YP_004459461.1| - 0.00085 19.4 41.7 0.23 11.5 1.3 6.1 2 1 5 7 7 7 4 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran PF00005.27 gi|332797961|ref|YP_004459461.1| - 0.0029 18.1 0.4 0.0029 18.1 0.4 6.2 2 1 1 3 3 2 1 ABC transporter MukB PF04310.12 gi|332797961|ref|YP_004459461.1| - 0.0034 17.2 0.1 0.0034 17.2 0.1 4.1 3 2 1 4 4 4 1 MukB N-terminal Spc7 PF08317.11 gi|332797961|ref|YP_004459461.1| - 0.0053 15.7 18.9 0.0053 15.7 18.9 5.6 1 1 4 5 5 5 3 Spc7 kinetochore protein NPV_P10 PF05531.12 gi|332797961|ref|YP_004459461.1| - 0.0068 16.8 47.9 0.24 11.9 0.3 9.0 5 4 3 8 8 8 3 Nucleopolyhedrovirus P10 protein AAA_23 PF13476.6 gi|332797961|ref|YP_004459461.1| - 0.0089 16.5 172.1 1.1e+03 -0.1 10.9 8.1 1 1 1 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|332797961|ref|YP_004459461.1| - 0.042 13.7 0.2 0.042 13.7 0.2 4.0 5 1 1 6 6 4 0 RsgA GTPase DUF4407 PF14362.6 gi|332797961|ref|YP_004459461.1| - 0.12 11.7 56.1 5.3 6.3 19.3 4.5 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) AAA_13 PF13166.6 gi|332797961|ref|YP_004459461.1| - 0.35 9.5 108.0 0.0041 15.9 26.2 5.3 1 1 3 5 5 4 0 AAA domain DUF3584 PF12128.8 gi|332797961|ref|YP_004459461.1| - 1.3 6.4 82.7 0.0051 14.4 41.8 4.1 2 1 1 4 4 4 0 Protein of unknown function (DUF3584) DUF2730 PF10805.8 gi|332797961|ref|YP_004459461.1| - 2.3 8.3 48.3 0.082 13.0 3.1 6.8 4 3 3 7 7 7 0 Protein of unknown function (DUF2730) PilJ PF13675.6 gi|332797961|ref|YP_004459461.1| - 3.9 7.5 9.6 18 5.4 0.2 4.6 3 2 2 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term PI_PP_I PF18363.1 gi|332797961|ref|YP_004459461.1| - 4.7 7.5 28.5 0.093 12.9 0.5 6.1 3 2 1 5 5 5 0 Phosphoinositide phosphatase insertion domain NAPRTase_N PF17767.1 gi|332797961|ref|YP_004459461.1| - 7.4 7.0 17.6 0.92 9.9 0.6 4.1 3 1 1 4 4 4 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NurA PF09376.10 gi|332797962|ref|YP_004459462.1| - 2.5e-27 96.1 2.1 3.4e-27 95.7 2.1 1.2 1 0 0 1 1 1 1 NurA domain Imm74 PF15603.6 gi|332797962|ref|YP_004459462.1| - 0.00048 20.3 0.1 0.12 12.6 0.0 2.5 2 0 0 2 2 2 2 Immunity protein 74 Cation_efflux PF01545.21 gi|332797963|ref|YP_004459463.1| - 9.3e-15 54.9 25.3 1.1e-14 54.7 25.3 1.1 1 0 0 1 1 1 1 Cation efflux family TauE PF01925.19 gi|332797963|ref|YP_004459463.1| - 0.0048 16.5 7.4 0.0063 16.2 6.7 1.5 1 1 0 1 1 1 1 Sulfite exporter TauE/SafE ZT_dimer PF16916.5 gi|332797963|ref|YP_004459463.1| - 0.046 13.9 7.4 0.14 12.4 0.2 2.5 2 1 1 3 3 3 0 Dimerisation domain of Zinc Transporter Methyltransf_11 PF08241.12 gi|332797964|ref|YP_004459464.1| - 1.1e-10 42.0 0.0 1.6e-10 41.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332797964|ref|YP_004459464.1| - 1.4e-05 25.7 0.0 2.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|332797964|ref|YP_004459464.1| - 0.00099 18.5 0.0 0.0017 17.8 0.0 1.4 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|332797964|ref|YP_004459464.1| - 0.12 12.2 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain DEAD_2 PF06733.15 gi|332797965|ref|YP_004459465.1| - 0.015 14.9 0.5 0.022 14.4 0.5 1.4 1 0 0 1 1 1 0 DEAD_2 CBS PF00571.28 gi|332797966|ref|YP_004459466.1| - 9e-36 122.1 9.3 6.1e-11 42.6 0.4 4.1 4 0 0 4 4 4 4 CBS domain Thiamine_BP PF01910.17 gi|332797967|ref|YP_004459467.1| - 7.5e-26 89.9 0.9 8.4e-26 89.7 0.9 1.0 1 0 0 1 1 1 1 Thiamine-binding protein FUR PF01475.19 gi|332797968|ref|YP_004459468.1| - 2.4e-23 82.5 0.0 2.8e-23 82.3 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_5 PF01022.20 gi|332797968|ref|YP_004459468.1| - 8e-06 25.6 0.0 0.00022 21.0 0.0 2.5 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332797968|ref|YP_004459468.1| - 0.00029 20.8 0.0 0.00047 20.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|332797968|ref|YP_004459468.1| - 0.00053 19.9 0.8 0.0048 16.8 0.1 2.8 2 1 1 3 3 3 1 HTH domain PadR PF03551.14 gi|332797968|ref|YP_004459468.1| - 0.0017 18.3 0.2 0.0035 17.3 0.0 1.5 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_CodY PF08222.11 gi|332797968|ref|YP_004459468.1| - 0.0023 17.5 0.3 0.0074 15.8 0.1 2.0 1 1 1 2 2 2 1 CodY helix-turn-helix domain E2F_TDP PF02319.20 gi|332797968|ref|YP_004459468.1| - 0.0025 17.8 0.0 0.012 15.6 0.0 1.9 2 0 0 2 2 2 1 E2F/DP family winged-helix DNA-binding domain TrmB PF01978.19 gi|332797968|ref|YP_004459468.1| - 0.0043 16.9 0.0 0.053 13.4 0.0 2.4 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HxlR PF01638.17 gi|332797968|ref|YP_004459468.1| - 0.005 16.7 0.0 0.01 15.7 0.0 1.5 1 1 0 1 1 1 1 HxlR-like helix-turn-helix HTH_24 PF13412.6 gi|332797968|ref|YP_004459468.1| - 0.031 13.8 0.1 0.3 10.7 0.0 2.7 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_32 PF13565.6 gi|332797968|ref|YP_004459468.1| - 0.036 14.7 0.0 0.089 13.4 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain DUF2250 PF10007.9 gi|332797968|ref|YP_004459468.1| - 0.053 13.6 0.0 0.14 12.3 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|332797968|ref|YP_004459468.1| - 0.054 13.8 0.0 0.1 12.9 0.0 1.4 2 0 0 2 2 2 0 Penicillinase repressor DUF2551 PF10826.8 gi|332797968|ref|YP_004459468.1| - 0.076 13.2 0.1 1.1 9.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2551) Arg_repressor PF01316.21 gi|332797968|ref|YP_004459468.1| - 0.091 12.5 0.4 6.4 6.6 0.1 2.9 2 1 1 3 3 3 0 Arginine repressor, DNA binding domain IU_nuc_hydro PF01156.19 gi|332797969|ref|YP_004459469.1| - 2.9e-73 247.1 0.0 3.4e-73 246.9 0.0 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase ABC_tran_CTD PF16326.5 gi|332797970|ref|YP_004459470.1| - 4.2e-08 33.3 56.0 0.00025 21.2 9.3 6.3 2 2 4 6 6 6 2 ABC transporter C-terminal domain AAA_23 PF13476.6 gi|332797970|ref|YP_004459470.1| - 5.1e-06 27.1 28.2 5.1e-06 27.1 28.2 4.5 1 1 2 3 3 1 1 AAA domain Filament PF00038.21 gi|332797970|ref|YP_004459470.1| - 6.5e-05 22.7 61.8 0.0036 17.0 9.8 4.2 1 1 3 4 4 4 3 Intermediate filament protein AAA_13 PF13166.6 gi|332797970|ref|YP_004459470.1| - 0.00067 18.4 53.2 0.032 12.9 42.8 3.1 1 1 1 2 2 2 2 AAA domain Phage_GP20 PF06810.11 gi|332797970|ref|YP_004459470.1| - 0.0024 17.7 14.2 0.0024 17.7 14.2 5.5 2 2 3 5 5 5 1 Phage minor structural protein GP20 DUF4407 PF14362.6 gi|332797970|ref|YP_004459470.1| - 0.0025 17.2 35.3 0.0099 15.3 8.8 3.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4407) BLOC1_2 PF10046.9 gi|332797970|ref|YP_004459470.1| - 0.0027 18.0 20.5 0.0047 17.2 6.7 7.0 2 2 4 6 6 6 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Golgin_A5 PF09787.9 gi|332797970|ref|YP_004459470.1| - 0.0032 17.0 60.0 0.039 13.4 22.2 3.3 1 1 2 3 3 3 2 Golgin subfamily A member 5 NPV_P10 PF05531.12 gi|332797970|ref|YP_004459470.1| - 0.015 15.8 28.8 0.26 11.8 4.1 5.1 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Vps51 PF08700.11 gi|332797970|ref|YP_004459470.1| - 0.019 15.1 0.3 0.019 15.1 0.3 6.2 5 3 1 6 6 5 0 Vps51/Vps67 DUF4844 PF16133.5 gi|332797970|ref|YP_004459470.1| - 0.027 15.0 0.3 0.027 15.0 0.3 4.6 2 2 3 5 5 5 0 Domain of unknown function (DUF4844) DHR10 PF18595.1 gi|332797970|ref|YP_004459470.1| - 0.082 13.0 72.1 0.088 12.9 26.2 4.8 3 3 1 4 4 4 0 Designed helical repeat protein 10 domain AAA_15 PF13175.6 gi|332797970|ref|YP_004459470.1| - 0.084 12.6 54.0 0.031 14.0 36.6 2.3 1 1 1 2 2 2 0 AAA ATPase domain Tup_N PF08581.10 gi|332797970|ref|YP_004459470.1| - 0.095 13.0 55.7 0.049 13.9 8.0 6.8 4 3 2 6 6 6 0 Tup N-terminal DUF1192 PF06698.11 gi|332797970|ref|YP_004459470.1| - 0.18 11.9 26.2 0.85 9.7 3.2 5.4 4 1 1 5 5 4 0 Protein of unknown function (DUF1192) Prefoldin_2 PF01920.20 gi|332797970|ref|YP_004459470.1| - 0.24 11.4 70.0 0.16 12.0 12.2 8.4 3 2 5 8 8 8 0 Prefoldin subunit TPR_MLP1_2 PF07926.12 gi|332797970|ref|YP_004459470.1| - 0.33 11.0 58.9 0.21 11.7 12.8 5.1 3 1 2 5 5 5 0 TPR/MLP1/MLP2-like protein DUF1664 PF07889.12 gi|332797970|ref|YP_004459470.1| - 0.35 10.9 46.5 0.11 12.5 4.0 5.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|332797970|ref|YP_004459470.1| - 0.37 9.6 72.3 1.8 7.4 26.3 4.2 2 2 2 4 4 4 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|332797970|ref|YP_004459470.1| - 0.94 9.7 57.0 0.25 11.5 18.9 4.6 1 1 4 5 5 5 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 gi|332797970|ref|YP_004459470.1| - 1.1 10.0 37.9 0.67 10.7 5.1 4.8 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) Baculo_PEP_C PF04513.12 gi|332797970|ref|YP_004459470.1| - 1.2 9.1 28.3 0.89 9.6 6.0 4.5 2 2 4 6 6 6 0 Baculovirus polyhedron envelope protein, PEP, C terminus WXG100 PF06013.12 gi|332797970|ref|YP_004459470.1| - 1.6 9.0 14.7 25 5.2 0.1 5.7 4 3 2 6 6 6 0 Proteins of 100 residues with WXG DUF3584 PF12128.8 gi|332797970|ref|YP_004459470.1| - 4.5 4.6 56.0 3.4 5.0 3.7 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3584) Rab5-bind PF09311.11 gi|332797970|ref|YP_004459470.1| - 4.7 6.5 56.9 0.066 12.6 9.4 4.3 2 2 2 4 4 4 0 Rabaptin-like protein FPP PF05911.11 gi|332797970|ref|YP_004459470.1| - 5.1 5.2 58.3 19 3.3 26.4 2.6 1 1 1 2 2 2 0 Filament-like plant protein, long coiled-coil CBS PF00571.28 gi|332797972|ref|YP_004459472.1| - 2e-31 108.2 3.6 8.9e-15 54.9 0.2 2.2 2 0 0 2 2 2 2 CBS domain Rad50_zn_hook PF04423.14 gi|332797972|ref|YP_004459472.1| - 0.0022 17.8 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Rad50 zinc hook motif Ribosomal_L9_C PF03948.14 gi|332797972|ref|YP_004459472.1| - 0.034 14.6 0.1 2.2 8.8 0.0 2.5 2 1 0 2 2 2 0 Ribosomal protein L9, C-terminal domain sCache_3_2 PF17203.4 gi|332797972|ref|YP_004459472.1| - 0.099 12.8 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 Single cache domain 3 Metallophos_2 PF12850.7 gi|332797973|ref|YP_004459473.1| - 1.9e-07 31.4 0.8 0.00011 22.5 0.8 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|332797973|ref|YP_004459473.1| - 2.5e-06 27.0 1.0 9.1e-05 21.9 0.0 2.6 3 0 0 3 3 3 1 Metallophosphoesterase, calcineurin superfamily Metallophos PF00149.28 gi|332797973|ref|YP_004459473.1| - 1.7e-05 25.4 7.0 0.00014 22.4 7.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Lsr2 PF11774.8 gi|332797973|ref|YP_004459473.1| - 0.027 14.6 0.3 0.12 12.5 0.1 2.0 1 1 1 2 2 2 0 Lsr2 APP_E2 PF12925.7 gi|332797973|ref|YP_004459473.1| - 0.053 13.2 0.4 0.081 12.6 0.4 1.2 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein His_Phos_1 PF00300.22 gi|332797974|ref|YP_004459474.1| - 1.9e-38 132.1 0.0 2.4e-38 131.8 0.0 1.1 1 0 0 1 1 1 1 Histidine phosphatase superfamily (branch 1) tRNA_deacylase PF04414.12 gi|332797975|ref|YP_004459475.1| - 6.1e-57 192.5 0.3 7.5e-57 192.2 0.3 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DAO PF01266.24 gi|332797976|ref|YP_004459476.1| - 5.2e-11 42.7 0.0 1.1e-09 38.3 0.0 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase GluRS_N PF18466.1 gi|332797976|ref|YP_004459476.1| - 0.18 12.2 2.7 6.8 7.2 0.7 2.8 2 0 0 2 2 2 0 Glutamate--tRNA ligase N-terminal domain Thioredoxin PF00085.20 gi|332797977|ref|YP_004459477.1| - 3.4e-28 97.6 0.0 6.4e-28 96.8 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|332797977|ref|YP_004459477.1| - 9.4e-09 35.7 0.6 6.1e-07 29.9 0.1 2.7 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_9 PF14595.6 gi|332797977|ref|YP_004459477.1| - 4e-07 29.9 0.1 5.7e-07 29.4 0.1 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|332797977|ref|YP_004459477.1| - 5.2e-06 26.7 0.1 0.0085 16.4 0.0 2.8 1 1 2 3 3 3 2 Thioredoxin-like HyaE PF07449.11 gi|332797977|ref|YP_004459477.1| - 9.9e-06 25.5 0.0 2.4e-05 24.2 0.0 1.6 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Phosducin PF02114.16 gi|332797977|ref|YP_004459477.1| - 2.6e-05 23.3 0.0 3.4e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Phosducin Thioredoxin_3 PF13192.6 gi|332797977|ref|YP_004459477.1| - 0.00011 22.2 0.2 0.00023 21.1 0.0 1.7 2 0 0 2 2 2 1 Thioredoxin domain AhpC-TSA PF00578.21 gi|332797977|ref|YP_004459477.1| - 0.00024 21.0 0.1 0.1 12.5 0.0 2.2 1 1 1 2 2 2 2 AhpC/TSA family OST3_OST6 PF04756.13 gi|332797977|ref|YP_004459477.1| - 0.00025 20.5 0.0 0.00032 20.1 0.0 1.3 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family Redoxin PF08534.10 gi|332797977|ref|YP_004459477.1| - 0.0017 18.1 0.0 0.01 15.6 0.0 1.8 1 1 1 2 2 2 1 Redoxin DUF2456 PF10445.9 gi|332797977|ref|YP_004459477.1| - 0.0052 16.8 0.0 0.0078 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2456) TraF PF13728.6 gi|332797977|ref|YP_004459477.1| - 0.043 13.6 0.1 0.072 12.9 0.1 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein PHTB1_C PF14728.6 gi|332797977|ref|YP_004459477.1| - 0.09 11.9 0.1 0.12 11.4 0.1 1.1 1 0 0 1 1 1 0 PTHB1 C-terminus DUF3921 PF13060.6 gi|332797978|ref|YP_004459478.1| - 0.14 12.2 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) NTPase_I-T PF01931.18 gi|332797979|ref|YP_004459479.1| - 2.8e-46 157.3 0.0 3.1e-46 157.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 Porin_OmpG PF09381.10 gi|332797979|ref|YP_004459479.1| - 0.035 13.9 0.2 0.26 11.0 0.0 1.9 1 1 1 2 2 2 0 Outer membrane protein G (OmpG) VitK2_biosynth PF02621.14 gi|332797980|ref|YP_004459480.1| - 2.1e-60 204.5 0.0 2.4e-60 204.3 0.0 1.0 1 0 0 1 1 1 1 Menaquinone biosynthesis Cation_efflux PF01545.21 gi|332797982|ref|YP_004459482.1| - 6.7e-15 55.3 22.2 9.3e-15 54.9 22.2 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|332797982|ref|YP_004459482.1| - 0.00015 21.8 0.0 0.00025 21.1 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter DUF983 PF06170.12 gi|332797982|ref|YP_004459482.1| - 3.2 8.2 7.0 0.57 10.6 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF983) EMG1 PF03587.14 gi|332797984|ref|YP_004459484.1| - 1.7e-42 145.3 0.1 1.9e-42 145.1 0.1 1.0 1 0 0 1 1 1 1 EMG1/NEP1 methyltransferase Rpr2 PF04032.16 gi|332797985|ref|YP_004459485.1| - 1.3e-12 47.9 0.1 1.9e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain SMP_LBD PF17047.5 gi|332797985|ref|YP_004459485.1| - 0.15 11.5 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Synaptotagmin-like mitochondrial-lipid-binding domain DUF371 PF04027.13 gi|332797986|ref|YP_004459486.1| - 4.4e-47 159.4 0.1 5.1e-47 159.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) PDZ_6 PF17820.1 gi|332797986|ref|YP_004459486.1| - 0.022 14.6 0.0 0.045 13.6 0.0 1.7 1 0 0 1 1 1 0 PDZ domain LacAB_rpiB PF02502.18 gi|332797986|ref|YP_004459486.1| - 0.059 13.4 0.2 5.8 6.9 0.0 2.2 2 0 0 2 2 2 0 Ribose/Galactose Isomerase Met_10 PF02475.16 gi|332797987|ref|YP_004459487.1| - 1.3e-32 113.2 0.7 1.6e-32 112.9 0.7 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|332797987|ref|YP_004459487.1| - 4.8e-07 30.4 0.0 7.7e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332797987|ref|YP_004459487.1| - 1.2e-05 25.9 0.0 2.1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|332797987|ref|YP_004459487.1| - 0.00014 21.3 0.0 0.00022 20.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family UPF0020 PF01170.18 gi|332797987|ref|YP_004459487.1| - 0.0002 21.1 0.0 0.0017 18.1 0.0 2.1 1 1 1 2 2 2 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|332797987|ref|YP_004459487.1| - 0.00044 19.9 0.0 0.0007 19.3 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 MTS PF05175.14 gi|332797987|ref|YP_004459487.1| - 0.001 18.6 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltr_RsmB-F PF01189.17 gi|332797987|ref|YP_004459487.1| - 0.0028 17.3 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltransf_15 PF09445.10 gi|332797987|ref|YP_004459487.1| - 0.0031 17.1 0.2 0.035 13.7 0.0 2.2 2 0 0 2 2 2 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.6 gi|332797987|ref|YP_004459487.1| - 0.0055 16.5 0.0 0.0085 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|332797987|ref|YP_004459487.1| - 0.023 13.9 0.1 0.036 13.2 0.0 1.3 1 1 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase Med6 PF04934.14 gi|332797987|ref|YP_004459487.1| - 0.025 14.4 0.1 0.054 13.3 0.1 1.6 1 0 0 1 1 1 0 MED6 mediator sub complex component DUF4263 PF14082.6 gi|332797987|ref|YP_004459487.1| - 0.05 13.9 0.1 0.59 10.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4263) Pyr_redox_2 PF07992.14 gi|332797988|ref|YP_004459488.1| - 1.9e-31 109.4 0.2 2.3e-31 109.1 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|332797988|ref|YP_004459488.1| - 5.2e-29 101.5 0.2 1.3e-24 87.0 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|332797988|ref|YP_004459488.1| - 9.5e-14 51.7 0.4 9.2e-11 42.2 0.0 2.8 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|332797988|ref|YP_004459488.1| - 6e-11 41.7 0.3 8.9e-05 21.4 0.0 3.5 4 0 0 4 4 4 2 HI0933-like protein K_oxygenase PF13434.6 gi|332797988|ref|YP_004459488.1| - 1.6e-10 40.7 0.4 1.2e-07 31.2 0.0 3.5 3 1 1 4 4 4 2 L-lysine 6-monooxygenase (NADPH-requiring) DAO PF01266.24 gi|332797988|ref|YP_004459488.1| - 1e-06 28.6 0.7 0.0044 16.6 0.0 3.5 3 1 1 4 4 4 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|332797988|ref|YP_004459488.1| - 3.2e-06 26.8 0.4 0.00032 20.2 0.0 2.8 3 0 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|332797988|ref|YP_004459488.1| - 3.7e-06 27.3 0.2 0.00048 20.5 0.1 2.7 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|332797988|ref|YP_004459488.1| - 9.3e-06 25.0 0.9 0.055 12.5 0.0 3.4 2 1 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.6 gi|332797988|ref|YP_004459488.1| - 1.1e-05 25.6 0.2 0.00028 21.1 0.1 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|332797988|ref|YP_004459488.1| - 0.00053 19.3 0.1 0.0028 17.0 0.1 2.1 2 0 0 2 2 2 1 Thi4 family FAD_binding_3 PF01494.19 gi|332797988|ref|YP_004459488.1| - 0.00091 18.6 0.3 1.6 7.9 0.0 3.0 2 1 0 3 3 3 2 FAD binding domain FMO-like PF00743.19 gi|332797988|ref|YP_004459488.1| - 0.0017 16.8 0.3 0.011 14.1 0.0 2.0 1 1 0 2 2 2 1 Flavin-binding monooxygenase-like GIDA PF01134.22 gi|332797988|ref|YP_004459488.1| - 0.0037 16.4 0.1 14 4.7 0.0 3.6 4 0 0 4 4 4 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|332797988|ref|YP_004459488.1| - 0.017 14.4 0.0 3.4 6.9 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Spermine_synth PF01564.17 gi|332797988|ref|YP_004459488.1| - 0.061 12.7 0.2 0.31 10.4 0.0 2.0 2 0 0 2 2 2 0 Spermine/spermidine synthase domain XdhC_C PF13478.6 gi|332797988|ref|YP_004459488.1| - 0.1 13.1 0.0 8.4 6.9 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain NAD_binding_9 PF13454.6 gi|332797988|ref|YP_004459488.1| - 0.3 11.0 1.2 9.8 6.1 0.0 3.1 3 1 1 4 4 4 0 FAD-NAD(P)-binding MFS_1 PF07690.16 gi|332797990|ref|YP_004459490.1| - 7.9e-22 77.7 47.9 7.9e-22 77.7 47.9 2.0 1 1 1 2 2 2 1 Major Facilitator Superfamily NAD_kinase PF01513.21 gi|332797991|ref|YP_004459491.1| - 1.9e-22 79.8 0.2 1.2e-21 77.2 0.2 1.9 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|332797991|ref|YP_004459491.1| - 0.0022 17.6 0.0 0.0052 16.4 0.0 1.6 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain Flavi_glycop_C PF02832.16 gi|332797991|ref|YP_004459491.1| - 0.029 14.5 0.0 0.095 12.9 0.0 1.8 1 0 0 1 1 1 0 Flavivirus glycoprotein, immunoglobulin-like domain PrpR_N PF06506.11 gi|332797991|ref|YP_004459491.1| - 0.046 13.3 0.1 0.091 12.3 0.1 1.6 1 0 0 1 1 1 0 Propionate catabolism activator DUF104 PF01954.16 gi|332797991|ref|YP_004459491.1| - 3.5 8.1 6.4 10 6.6 0.1 3.4 3 1 1 4 4 4 0 Protein of unknown function DUF104 PIN_6 PF17146.4 gi|332797992|ref|YP_004459492.1| - 3.4e-18 65.9 0.2 4.6e-18 65.5 0.2 1.2 1 0 0 1 1 1 1 PIN domain of ribonuclease HypA PF01155.19 gi|332797992|ref|YP_004459492.1| - 0.00033 20.6 0.6 0.00048 20.1 0.6 1.4 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|332797992|ref|YP_004459492.1| - 0.0043 16.9 0.9 0.0063 16.4 0.9 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|332797992|ref|YP_004459492.1| - 0.013 15.5 0.2 0.019 15.0 0.2 1.2 1 0 0 1 1 1 0 Double zinc ribbon Abdominal-A PF12407.8 gi|332797992|ref|YP_004459492.1| - 0.017 14.7 0.2 0.039 13.5 0.2 1.6 1 0 0 1 1 1 0 Homeobox protein zinc-ribbons_6 PF07191.12 gi|332797992|ref|YP_004459492.1| - 0.021 14.8 0.6 0.042 13.8 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|332797992|ref|YP_004459492.1| - 0.037 14.1 2.2 0.083 13.0 2.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain FANCL_C PF11793.8 gi|332797992|ref|YP_004459492.1| - 0.082 13.1 1.0 0.13 12.4 1.0 1.3 1 0 0 1 1 1 0 FANCL C-terminal domain A2L_zn_ribbon PF08792.10 gi|332797992|ref|YP_004459492.1| - 0.51 10.1 4.6 1.6 8.5 0.4 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-H2C2_2 PF13465.6 gi|332797992|ref|YP_004459492.1| - 1.5 9.4 4.6 8.8 7.0 0.6 2.3 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.26 gi|332797992|ref|YP_004459492.1| - 3.7 8.2 5.0 20 5.9 0.6 2.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|332797992|ref|YP_004459492.1| - 8.4 6.4 7.7 18 5.3 0.8 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Aminotran_5 PF00266.19 gi|332797994|ref|YP_004459494.1| - 2.4e-45 155.1 0.0 4.6e-45 154.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|332797994|ref|YP_004459494.1| - 4.2e-05 22.2 0.3 7.5e-05 21.4 0.3 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|332797994|ref|YP_004459494.1| - 0.098 11.9 0.8 1.8 7.8 0.2 2.1 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family NadA PF02445.16 gi|332797995|ref|YP_004459495.1| - 8.6e-103 343.6 2.7 9.8e-103 343.4 2.7 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF3368 PF11848.8 gi|332797996|ref|YP_004459496.1| - 0.062 13.1 0.6 1.1 9.1 0.1 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF3368) FTH PF01827.27 gi|332797997|ref|YP_004459497.1| - 0.13 12.1 0.1 1.8 8.4 0.0 2.1 2 0 0 2 2 2 0 FTH domain Zn-ribbon_8 PF09723.10 gi|332797998|ref|YP_004459498.1| - 0.0044 17.1 1.7 0.0084 16.2 1.7 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|332797998|ref|YP_004459498.1| - 0.015 15.3 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SMC_ScpB PF04079.16 gi|332797998|ref|YP_004459498.1| - 0.023 14.3 0.1 0.028 14.0 0.1 1.1 1 0 0 1 1 1 0 Segregation and condensation complex subunit ScpB ADK_lid PF05191.14 gi|332797998|ref|YP_004459498.1| - 0.057 13.4 2.2 0.057 13.4 2.2 1.9 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_20 PF12840.7 gi|332797998|ref|YP_004459498.1| - 0.07 13.2 0.0 0.094 12.8 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|332797998|ref|YP_004459498.1| - 0.075 13.0 0.1 0.099 12.6 0.1 1.3 1 0 0 1 1 1 0 HTH domain z-alpha PF02295.17 gi|332797998|ref|YP_004459498.1| - 0.086 12.9 0.1 0.15 12.1 0.1 1.4 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_5 PF01022.20 gi|332797998|ref|YP_004459498.1| - 0.14 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TF_Zn_Ribbon PF08271.12 gi|332797998|ref|YP_004459498.1| - 0.16 11.5 3.5 4 7.0 0.7 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding TFIIS_C PF01096.18 gi|332797998|ref|YP_004459498.1| - 0.2 11.6 1.5 36 4.3 0.4 3.0 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) DUF1451 PF07295.11 gi|332797998|ref|YP_004459498.1| - 0.26 11.3 0.5 0.41 10.7 0.5 1.3 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-C2H2 PF00096.26 gi|332797998|ref|YP_004459498.1| - 0.63 10.6 2.4 4.4 8.0 0.1 2.6 3 0 0 3 3 3 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 gi|332797998|ref|YP_004459498.1| - 0.98 10.0 7.3 2.4 8.7 0.2 2.4 1 1 1 2 2 2 0 Zinc-finger double domain PhnA_Zn_Ribbon PF08274.12 gi|332797998|ref|YP_004459498.1| - 1.2 9.1 5.7 1.9 8.5 0.9 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Hydrolase PF00702.26 gi|332797999|ref|YP_004459499.1| - 1.9e-12 48.0 0.0 8.6e-12 45.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|332797999|ref|YP_004459499.1| - 2.8e-12 47.1 0.0 4.9e-12 46.3 0.0 1.5 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|332797999|ref|YP_004459499.1| - 0.024 14.8 0.0 0.1 12.8 0.0 1.9 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase MTS PF05175.14 gi|332798000|ref|YP_004459500.1| - 2.3e-10 40.3 0.0 3.7e-10 39.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.6 gi|332798000|ref|YP_004459500.1| - 2e-09 37.4 2.1 9.6e-09 35.2 2.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|332798000|ref|YP_004459500.1| - 2.5e-08 34.5 0.2 1.3e-07 32.2 0.2 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332798000|ref|YP_004459500.1| - 1.4e-06 28.8 0.1 8.5e-06 26.3 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332798000|ref|YP_004459500.1| - 0.00019 22.1 0.1 0.00041 21.0 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|332798000|ref|YP_004459500.1| - 0.00041 20.1 0.0 0.00078 19.2 0.0 1.5 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 NodS PF05401.11 gi|332798000|ref|YP_004459500.1| - 0.00097 18.8 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) DUF43 PF01861.16 gi|332798000|ref|YP_004459500.1| - 0.0039 16.4 0.2 0.0055 16.0 0.2 1.4 1 1 0 1 1 1 1 Branched-chain polyamine synthase A C-terminal domain PrmA PF06325.13 gi|332798000|ref|YP_004459500.1| - 0.0051 16.2 0.0 0.012 15.0 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.6 gi|332798000|ref|YP_004459500.1| - 0.0076 16.1 0.0 0.011 15.5 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|332798000|ref|YP_004459500.1| - 0.01 15.5 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 Conserved hypothetical protein 95 TehB PF03848.14 gi|332798000|ref|YP_004459500.1| - 0.039 13.4 0.2 0.35 10.3 0.1 2.1 1 1 1 2 2 2 0 Tellurite resistance protein TehB Orthopox_F14 PF06076.12 gi|332798000|ref|YP_004459500.1| - 0.068 13.4 0.3 0.19 12.0 0.1 1.9 2 0 0 2 2 2 0 Orthopoxvirus F14 protein Hydrolase_3 PF08282.12 gi|332798001|ref|YP_004459501.1| - 2.4e-27 96.3 0.7 3.7e-20 72.7 1.5 2.0 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|332798001|ref|YP_004459501.1| - 2.7e-08 33.7 0.1 9.2e-05 22.1 0.1 2.1 2 0 0 2 2 2 2 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|332798001|ref|YP_004459501.1| - 0.0012 19.3 0.0 1.3 9.4 0.0 2.7 2 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|332798001|ref|YP_004459501.1| - 0.0027 18.0 0.0 0.082 13.2 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase AP_endonuc_2 PF01261.24 gi|332798002|ref|YP_004459502.1| - 3.6e-23 82.1 0.1 4.8e-23 81.7 0.1 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UvdE PF03851.14 gi|332798002|ref|YP_004459502.1| - 0.00037 19.8 0.0 0.00055 19.3 0.0 1.2 1 0 0 1 1 1 1 UV-endonuclease UvdE FAD_binding_4 PF01565.23 gi|332798003|ref|YP_004459503.1| - 4e-34 117.3 0.0 7.3e-34 116.5 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.6 gi|332798003|ref|YP_004459503.1| - 5.5e-08 33.2 2.0 1.1e-07 32.3 2.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|332798003|ref|YP_004459503.1| - 2.1e-07 31.3 1.5 3.9e-07 30.4 1.5 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|332798003|ref|YP_004459503.1| - 9.5e-07 28.8 1.7 0.035 14.2 0.1 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|332798003|ref|YP_004459503.1| - 2.7e-05 25.0 3.5 8.2e-05 23.5 3.5 1.9 1 0 0 1 1 1 1 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|332798003|ref|YP_004459503.1| - 4.5e-05 23.9 5.0 0.00012 22.6 5.0 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|332798003|ref|YP_004459503.1| - 0.00034 20.7 7.3 0.0083 16.3 8.9 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|332798003|ref|YP_004459503.1| - 0.00037 20.7 3.0 0.29 11.3 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain FAD-oxidase_C PF02913.19 gi|332798003|ref|YP_004459503.1| - 0.003 17.2 0.1 0.015 14.9 0.1 2.2 1 1 0 1 1 1 1 FAD linked oxidases, C-terminal domain Fer4_2 PF12797.7 gi|332798003|ref|YP_004459503.1| - 0.017 15.2 2.0 0.017 15.2 2.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|332798003|ref|YP_004459503.1| - 0.018 15.2 8.1 0.23 11.6 0.7 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|332798003|ref|YP_004459503.1| - 0.048 13.5 16.5 0.21 11.5 3.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|332798003|ref|YP_004459503.1| - 0.13 12.0 2.7 4.8 7.0 0.1 2.4 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DUF5643 PF18705.1 gi|332798003|ref|YP_004459503.1| - 0.33 11.0 10.2 1.9 8.5 0.2 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5643) Fer4_6 PF12837.7 gi|332798003|ref|YP_004459503.1| - 1.8 8.8 14.7 0.027 14.5 2.2 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|332798003|ref|YP_004459503.1| - 9.1 7.1 12.7 0.34 11.5 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain HIT PF01230.23 gi|332798004|ref|YP_004459504.1| - 1.2e-25 90.1 0.1 1.9e-25 89.5 0.1 1.2 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|332798004|ref|YP_004459504.1| - 4.8e-14 52.8 0.0 7.1e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|332798004|ref|YP_004459504.1| - 0.00024 20.9 0.4 0.0004 20.2 0.4 1.4 1 1 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DUF4931 PF16285.5 gi|332798004|ref|YP_004459504.1| - 0.00034 20.0 0.1 0.00037 19.9 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4931) SNARE_assoc PF09335.11 gi|332798005|ref|YP_004459505.1| - 0.00077 19.9 8.7 0.0009 19.7 6.8 2.1 2 1 0 2 2 2 1 SNARE associated Golgi protein PRA1 PF03208.19 gi|332798005|ref|YP_004459505.1| - 0.55 9.8 5.9 0.37 10.4 3.5 2.0 2 0 0 2 2 2 0 PRA1 family protein NUDIX PF00293.28 gi|332798006|ref|YP_004459506.1| - 7.5e-15 55.1 0.0 1.2e-14 54.5 0.0 1.3 1 0 0 1 1 1 1 NUDIX domain Chlor_dismutase PF06778.12 gi|332798007|ref|YP_004459507.1| - 8.8e-48 162.5 0.3 4.2e-43 147.2 0.0 2.0 1 1 1 2 2 2 2 Chlorite dismutase Darcynin PF17074.5 gi|332798007|ref|YP_004459507.1| - 0.049 13.9 0.0 0.093 13.0 0.0 1.4 1 0 0 1 1 1 0 Darcynin, domain of unknown function Pilin_PilA PF14245.6 gi|332798007|ref|YP_004459507.1| - 0.15 12.0 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Type IV pilin PilA Ribosomal_L18_c PF14204.6 gi|332798008|ref|YP_004459508.1| - 0.1 13.5 0.9 0.18 12.7 0.1 1.8 2 0 0 2 2 2 0 Ribosomal L18 C-terminal region SafA PF17073.5 gi|332798009|ref|YP_004459509.1| - 0.0062 16.5 2.7 0.84 9.6 0.3 2.9 2 0 0 2 2 2 2 Two-component-system connector protein NAD_synthase PF02540.17 gi|332798010|ref|YP_004459510.1| - 3.6e-76 255.5 0.1 4.2e-76 255.3 0.1 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|332798010|ref|YP_004459510.1| - 8.7e-06 24.8 0.0 0.0024 16.7 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|332798010|ref|YP_004459510.1| - 0.00052 19.8 0.0 0.00059 19.6 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.14 gi|332798010|ref|YP_004459510.1| - 0.00058 19.5 0.0 0.001 18.7 0.0 1.4 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.13 gi|332798010|ref|YP_004459510.1| - 0.002 17.7 0.1 0.0058 16.2 0.0 1.8 3 0 0 3 3 3 1 Queuosine biosynthesis protein QueC DDRGK PF09756.9 gi|332798010|ref|YP_004459510.1| - 0.11 12.1 0.2 0.32 10.6 0.0 1.8 2 0 0 2 2 2 0 DDRGK domain HTH_25 PF13413.6 gi|332798010|ref|YP_004459510.1| - 0.12 12.3 0.1 1.6 8.6 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain CN_hydrolase PF00795.22 gi|332798011|ref|YP_004459511.1| - 6.4e-27 94.5 0.0 7.7e-27 94.3 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase HTH_5 PF01022.20 gi|332798012|ref|YP_004459512.1| - 9.2e-13 47.8 0.5 1.6e-12 47.1 0.5 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|332798012|ref|YP_004459512.1| - 1.4e-09 37.8 0.0 1.9e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|332798012|ref|YP_004459512.1| - 3e-09 36.6 1.3 4.5e-09 36.1 1.3 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|332798012|ref|YP_004459512.1| - 3.1e-05 23.8 0.8 4.6e-05 23.3 0.6 1.5 1 1 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|332798012|ref|YP_004459512.1| - 4.8e-05 22.8 3.2 0.00011 21.7 0.5 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|332798012|ref|YP_004459512.1| - 0.00028 20.5 0.2 0.00046 19.8 0.2 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_34 PF13601.6 gi|332798012|ref|YP_004459512.1| - 0.00032 20.8 0.7 0.00041 20.5 0.7 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|332798012|ref|YP_004459512.1| - 0.00062 19.6 0.2 0.00097 19.0 0.2 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|332798012|ref|YP_004459512.1| - 0.00075 19.3 0.0 0.00095 19.0 0.0 1.1 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|332798012|ref|YP_004459512.1| - 0.0018 18.2 0.0 0.0025 17.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Penicillinase_R PF03965.16 gi|332798012|ref|YP_004459512.1| - 0.0023 18.2 1.0 0.0038 17.6 1.0 1.4 1 1 0 1 1 1 1 Penicillinase repressor MerR_1 PF13411.6 gi|332798012|ref|YP_004459512.1| - 0.0025 17.9 1.2 0.0046 17.0 0.8 1.7 1 1 0 1 1 1 1 MerR HTH family regulatory protein HTH_45 PF14947.6 gi|332798012|ref|YP_004459512.1| - 0.0029 17.6 2.3 0.0044 17.0 2.3 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|332798012|ref|YP_004459512.1| - 0.0031 18.0 0.3 0.0046 17.4 0.3 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|332798012|ref|YP_004459512.1| - 0.0047 17.1 0.6 0.0084 16.3 0.6 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|332798012|ref|YP_004459512.1| - 0.0099 15.7 0.1 0.016 15.0 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TnsD PF15978.5 gi|332798012|ref|YP_004459512.1| - 0.013 14.6 0.4 0.013 14.6 0.4 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D HTH_28 PF13518.6 gi|332798012|ref|YP_004459512.1| - 0.013 15.6 0.0 0.016 15.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|332798012|ref|YP_004459512.1| - 0.018 15.3 0.5 0.027 14.8 0.5 1.3 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_38 PF13936.6 gi|332798012|ref|YP_004459512.1| - 0.019 14.7 0.0 0.037 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|332798012|ref|YP_004459512.1| - 0.019 14.9 0.3 0.04 13.9 0.3 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain FUR PF01475.19 gi|332798012|ref|YP_004459512.1| - 0.026 14.6 1.3 0.045 13.9 1.3 1.4 1 1 0 1 1 1 0 Ferric uptake regulator family GerE PF00196.19 gi|332798012|ref|YP_004459512.1| - 0.027 14.0 0.0 0.046 13.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.20 gi|332798012|ref|YP_004459512.1| - 0.027 14.8 0.1 0.033 14.5 0.1 1.2 1 0 0 1 1 1 0 Transcriptional regulator DUF4393 PF14337.6 gi|332798012|ref|YP_004459512.1| - 0.032 14.0 1.4 0.035 13.9 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4393) DUF2089 PF09862.9 gi|332798012|ref|YP_004459512.1| - 0.042 13.9 2.1 0.5 10.4 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2089) DUF1495 PF07381.11 gi|332798012|ref|YP_004459512.1| - 0.086 12.7 0.6 2.1 8.2 0.6 2.1 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) LexA_DNA_bind PF01726.16 gi|332798012|ref|YP_004459512.1| - 0.088 12.6 0.1 0.18 11.6 0.1 1.6 1 1 0 1 1 1 0 LexA DNA binding domain PadR PF03551.14 gi|332798012|ref|YP_004459512.1| - 0.16 12.0 2.6 0.95 9.5 2.6 2.0 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family ASFV_J13L PF05568.11 gi|332798013|ref|YP_004459513.1| - 0.22 11.3 4.1 0.32 10.7 4.1 1.2 1 0 0 1 1 1 0 African swine fever virus J13L protein Methyltransf_25 PF13649.6 gi|332798014|ref|YP_004459514.1| - 4.7e-15 56.1 0.0 8.3e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|332798014|ref|YP_004459514.1| - 2.6e-12 46.9 0.0 9e-12 45.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|332798014|ref|YP_004459514.1| - 1.2e-10 41.4 0.0 1.7e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|332798014|ref|YP_004459514.1| - 4.9e-10 39.9 0.0 1.1e-09 38.8 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|332798014|ref|YP_004459514.1| - 1.8e-07 31.8 0.0 3.3e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|332798014|ref|YP_004459514.1| - 4.7e-06 26.1 1.0 2.5e-05 23.8 0.5 2.1 1 1 1 2 2 2 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.18 gi|332798014|ref|YP_004459514.1| - 1.5e-05 24.5 0.0 5.3e-05 22.7 0.0 1.9 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family PrmA PF06325.13 gi|332798014|ref|YP_004459514.1| - 2.4e-05 23.9 0.0 4.7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|332798014|ref|YP_004459514.1| - 3.6e-05 23.4 0.0 7.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_15 PF09445.10 gi|332798014|ref|YP_004459514.1| - 0.042 13.4 0.1 0.15 11.6 0.1 1.9 1 1 1 2 2 2 0 RNA cap guanine-N2 methyltransferase Methyltransf_32 PF13679.6 gi|332798014|ref|YP_004459514.1| - 0.054 13.5 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|332798014|ref|YP_004459514.1| - 0.08 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase CheR PF01739.18 gi|332798014|ref|YP_004459514.1| - 0.08 12.4 0.1 1.8 8.0 0.0 2.3 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain Methyltransf_18 PF12847.7 gi|332798014|ref|YP_004459514.1| - 0.1 12.5 0.0 0.27 11.2 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|332798014|ref|YP_004459514.1| - 0.2 11.3 2.6 1.3 8.7 0.0 2.8 2 2 1 3 3 3 0 DNA methylase PadR PF03551.14 gi|332798015|ref|YP_004459515.1| - 1.9e-11 43.7 1.8 2.7e-11 43.3 1.8 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|332798015|ref|YP_004459515.1| - 0.0065 16.2 0.1 0.0065 16.2 0.1 1.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4364) Tht1 PF04163.12 gi|332798015|ref|YP_004459515.1| - 0.056 12.2 0.0 0.058 12.2 0.0 1.1 1 0 0 1 1 1 0 Tht1-like nuclear fusion protein pXO2-72 PF17443.2 gi|332798015|ref|YP_004459515.1| - 0.07 13.4 0.5 0.13 12.5 0.5 1.4 1 0 0 1 1 1 0 Uncharacterized protein pXO2-72 ILVD_EDD PF00920.21 gi|332798016|ref|YP_004459516.1| - 2.5e-214 712.7 1.6 2.8e-214 712.5 1.6 1.0 1 0 0 1 1 1 1 Dehydratase family Inhibitor_I78 PF11720.8 gi|332798016|ref|YP_004459516.1| - 0.16 12.1 0.0 6.5 6.9 0.0 2.7 2 0 0 2 2 2 0 Peptidase inhibitor I78 family FeoA PF04023.14 gi|332798016|ref|YP_004459516.1| - 0.41 10.9 2.2 3 8.2 0.0 3.3 4 0 0 4 4 4 0 FeoA domain Semialdhyde_dh PF01118.24 gi|332798017|ref|YP_004459517.1| - 3.9e-32 111.2 0.0 8.5e-32 110.1 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|332798017|ref|YP_004459517.1| - 6.1e-21 75.3 0.0 8.5e-21 74.8 0.0 1.2 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DUF1062 PF06353.12 gi|332798019|ref|YP_004459519.1| - 0.051 14.4 0.1 0.08 13.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1062) Pro-kuma_activ PF09286.11 gi|332798020|ref|YP_004459520.1| - 0.03 14.6 0.1 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 Pro-kumamolisin, activation domain Iso_dh PF00180.20 gi|332798022|ref|YP_004459522.1| - 2.9e-102 342.4 0.3 3.6e-102 342.1 0.3 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase P22_Tail-4 PF11650.8 gi|332798022|ref|YP_004459522.1| - 0.046 13.7 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 P22 tail accessory factor # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidianus_hospitalis_W1_uid66875/NC_015518.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidianus_hospitalis_W1_uid66875/NC_015518.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidianus_hospitalis_W1_uid66875/NC_015518.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Crenarchaeota/Acidianus_hospitalis_W1_uid66875/NC_015518.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 10:50:14 2019 # [ok]