Rscript ~/code/spp/spp_package/run_spp.R -c=Homo_sapiens-non-identifiable_human_individual-liver-H3K4me3-ERR572159.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-non-identifiable_human_individual-liver-H3K4me3-ERR572159.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Homo_sapiens-non-identifiable_human_individual-liver-H3K27Ac-ERR572148.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-non-identifiable_human_individual-liver-H3K27Ac-ERR572148.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Homo_sapiens-non-identifiable_human_individual-liver-input-ERR572195.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-non-identifiable_human_individual-liver-input-ERR572195.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-male-liver-H3K4me3-ERR572234.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-male-liver-H3K4me3-ERR572234.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Chlorocebus_aethiops_sabaeus-female-liver-H3K4me3-ERR572265.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Chlorocebus_aethiops_sabaeus-female-liver-H3K4me3-ERR572265.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Callithrix_jacchus-male-liver-H3K4me3-ERR572279.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Callithrix_jacchus-male-liver-H3K4me3-ERR572279.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Mus_musculus_domesticus-male-liver-H3K4me3-ERR572162.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mus_musculus_domesticus-male-liver-H3K4me3-ERR572162.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Rattus_norvegicus-male-liver-H3K4me3-ERR572172.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Rattus_norvegicus-male-liver-H3K4me3-ERR572172.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Cavia_porcellus-male-liver-H3K4me3-ERR572170.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Cavia_porcellus-male-liver-H3K4me3-ERR572170.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Heterocephalus_glaber-male-liver-H3K27Ac-ERR572247.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Heterocephalus_glaber-male-liver-H3K27Ac-ERR572247.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Heterocephalus_glaber-male-liver-H3K27Ac-ERR572263.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Heterocephalus_glaber-male-liver-H3K27Ac-ERR572263.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Heterocephalus_glaber-male-liver-input-ERR572168.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Heterocephalus_glaber-male-liver-input-ERR572168.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Heterocephalus_glaber-male-liver-input-ERR572291.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Heterocephalus_glaber-male-liver-input-ERR572291.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Heterocephalus_glaber-male-liver-input-ERR572187.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Heterocephalus_glaber-male-liver-input-ERR572187.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572213.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572213.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572153.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572153.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572267.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K4me3-ERR572267.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572126.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572126.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572232.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572232.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572222.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-H3K27Ac-ERR572222.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-input-ERR572212.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-input-ERR572212.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-input-ERR572238.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-input-ERR572238.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Oryctolagus_cuniculus-male-liver-input-ERR572288.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Oryctolagus_cuniculus-male-liver-input-ERR572288.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-H3K4me3-ERR572196.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-H3K4me3-ERR572196.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-H3K4me3-ERR572133.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-H3K4me3-ERR572133.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-female-liver-H3K4me3-ERR572298.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-female-liver-H3K4me3-ERR572298.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-H3K27Ac-ERR572256.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-H3K27Ac-ERR572256.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-H3K27Ac-ERR572277.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-H3K27Ac-ERR572277.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-female-liver-H3K27Ac-ERR572198.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-female-liver-H3K27Ac-ERR572198.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-input-ERR572178.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-input-ERR572178.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-male-liver-input-ERR572268.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-male-liver-input-ERR572268.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Tupaia_belangeri-female-liver-input-ERR572274.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Tupaia_belangeri-female-liver-input-ERR572274.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K4me3-ERR572160.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K4me3-ERR572160.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K4me3-ERR572137.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K4me3-ERR572137.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K4me3-ERR572243.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K4me3-ERR572243.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K4me3-ERR572180.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K4me3-ERR572180.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K27Ac-ERR572199.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K27Ac-ERR572199.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K27Ac-ERR572216.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K27Ac-ERR572216.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K27Ac-ERR572236.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K27Ac-ERR572236.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-H3K27Ac-ERR572139.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-H3K27Ac-ERR572139.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-input-ERR572283.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-input-ERR572283.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-input-ERR572271.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-input-ERR572271.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-input-ERR572132.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-input-ERR572132.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Bos_taurus-male-liver-input-ERR572289.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Bos_taurus-male-liver-input-ERR572289.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K4me3-ERR572292.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K4me3-ERR572292.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K4me3-ERR572197.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K4me3-ERR572197.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K4me3-ERR572167.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K4me3-ERR572167.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K27Ac-ERR572204.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K27Ac-ERR572204.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K27Ac-ERR572261.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K27Ac-ERR572261.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-H3K27Ac-ERR572214.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-H3K27Ac-ERR572214.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-input-ERR572294.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-input-ERR572294.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-input-ERR572157.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-input-ERR572157.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sus_scrofa-male-liver-input-ERR572138.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sus_scrofa-male-liver-input-ERR572138.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K4me3-ERR572260.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K4me3-ERR572260.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K4me3-ERR572190.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K4me3-ERR572190.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K4me3-ERR572299.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K4me3-ERR572299.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K27Ac-ERR572253.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K27Ac-ERR572253.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K27Ac-ERR572282.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K27Ac-ERR572282.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-H3K27Ac-ERR572275.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-H3K27Ac-ERR572275.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-input-ERR572259.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-input-ERR572259.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-input-ERR572207.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-input-ERR572207.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Canis_familiaris-male-liver-input-ERR572210.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-male-liver-input-ERR572210.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-H3K4me3-ERR572163.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-H3K4me3-ERR572163.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-H3K4me3-ERR572244.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-H3K4me3-ERR572244.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-H3K27Ac-ERR572257.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-H3K27Ac-ERR572257.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-H3K27Ac-ERR572171.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-H3K27Ac-ERR572171.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-input-ERR572235.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-input-ERR572235.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Felis_catus-female-liver-input-ERR572152.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Felis_catus-female-liver-input-ERR572152.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K4me3-ERR572130.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K4me3-ERR572130.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K4me3-ERR572191.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K4me3-ERR572191.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K4me3-ERR572224.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K4me3-ERR572224.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572131.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572131.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572200.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572200.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572293.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-H3K27Ac-ERR572293.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-input-ERR572164.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-input-ERR572164.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-input-ERR572217.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-input-ERR572217.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Mustela_putorius_furo-male-liver-input-ERR572254.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mustela_putorius_furo-male-liver-input-ERR572254.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-H3K4me3-ERR572165.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-H3K4me3-ERR572165.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-H3K4me3-ERR572252.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-H3K4me3-ERR572252.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-H3K27Ac-ERR572161.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-H3K27Ac-ERR572161.50mers.unique.QC
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Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-input-ERR572128.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-input-ERR572128.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-input-ERR572193.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-input-ERR572193.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Monodelphis_domestica-male-liver-input-ERR572278.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domestica-male-liver-input-ERR572278.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-female-liver-H3K4me3-ERR572296.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-female-liver-H3K4me3-ERR572296.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-male-liver-H3K4me3-ERR572134.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-male-liver-H3K4me3-ERR572134.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-female-liver-H3K27Ac-ERR572147.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-female-liver-H3K27Ac-ERR572147.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-male-liver-H3K27Ac-ERR572156.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-male-liver-H3K27Ac-ERR572156.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-female-liver-input-ERR572237.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-female-liver-input-ERR572237.50mers.unique.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Sarcophilus_harrisii-male-liver-input-ERR572194.50mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Sarcophilus_harrisii-male-liver-input-ERR572194.50mers.unique.QC