# R script for Peak Model
#  -- generated by MACS
p <- c(0.0436712252358,0.050890233364,0.058120024178,0.0654751637142,0.0729381301081,0.0731106530806,0.0732360018028,0.0736686570696,0.0738613975779,0.0735379170045,0.0735230908116,0.0738061363133,0.0739301371997,0.0739570939141,0.0738506148921,0.0736983094555,0.0734866992471,0.0734732208899,0.0735460040189,0.0736996572912,0.0736794397554,0.0735123081258,0.0735150037973,0.0735150037973,0.0734408728325,0.0734543511898,0.073380220225,0.0733195676175,0.0732899152316,0.0733343938105,0.0733182197818,0.073404481268,0.0735311778259,0.07374413587,0.0738519627278,0.0740069638359,0.074244182923,0.0745137500674,0.0746054028965,0.0746984035614,0.0747442299759,0.0747307516187,0.0747509691545,0.0746727946826,0.0746350552824,0.0746741425184,0.0745959680465,0.0742010521799,0.0740905296506,0.0740905296506,0.0741889216584,0.0742347480729,0.0742212697157,0.0739503547355,0.0741067036793,0.0742509221016,0.0743533576165,0.0746606641611,0.0746539249825,0.0745824896893,0.0746390987896,0.0747213167686,0.0746377509539,0.0746984035614,0.0746188812538,0.0744045753739,0.0745137500674,0.0743614446308,0.0746916643828,0.0746822295327,0.0747442299759,0.0747199689329,0.0745757505106,0.0749073180983,0.0750609713706,0.0753494082152,0.0751890157643,0.0752617988933,0.075166102557,0.0753669300796,0.0754127564941,0.0754289305228,0.0755381052163,0.0753264950079,0.0752927991149,0.0752334943431,0.0753440168723,0.0753372776937,0.075384451944,0.0752402335217,0.0752564075504,0.0752267551645,0.075287407772,0.075539453052,0.075384451944,0.0754868874589,0.0754208435085,0.0754653220873,0.0755178876805,0.0755677576022,0.0754895831303,0.0756230188668,0.0757389327389,0.07567558446,0.0760381522693,0.0759384124258,0.0761015005482,0.0760071520476,0.0759586299616,0.0759168470543,0.0761648488271,0.0762174144203,0.0762942410565,0.0762659365063,0.0760583698051,0.0761729358415,0.0761581096485,0.0763602850069,0.0763414153068,0.0764735032075,0.0765907649154,0.0764088070929,0.0765557211866,0.0767498095306,0.0768482015383,0.0768792017599,0.0767956359452,0.0766500696872,0.0768859409385,0.0770975511469,0.0769560283961,0.0770840727897,0.0769964634678,0.0767578965449,0.0768657234027,0.0767592443807,0.077058463911,0.0773118570268,0.077043637718,0.0770220723465,0.0770085939893,0.0771703342759,0.0773576834413,0.0776798161789,0.077689251029,0.077795730051,0.0777067728934,0.0777943822153,0.0779022090731,0.0776555551359,0.0776959902076,0.0776946423719,0.0776339897644,0.0774264230632,0.0776434246144,0.077592206857,0.0778873828802,0.0781556021889,0.0782297331536,0.0784683000764,0.0783833864259,0.0785855617843,0.0785855617843,0.0787648239353,0.0786826059563,0.0788659116145,0.0785774747699,0.0783820385902,0.0784588652264,0.0786179098416,0.0787756066211,0.0787958241569,0.0788093025142,0.0788753464645,0.0788915204932,0.0790047386939,0.0792500447953,0.0793120452385,0.0794198720963,0.0793255235958,0.0794966987325,0.0791273917446,0.079096391523,0.0788982596718,0.0790195648868,0.0788106503499,0.0787890849783,0.0788079546784,0.0788349113929,0.0790128257082,0.0791920878593,0.0795317424613,0.079857918706,0.0803000088229,0.0804078356807,0.0806720114823,0.0808782303478,0.0809537091482,0.080998187727,0.0811707106995,0.0811572323423,0.0812273197998,0.0811841890567,0.0811545366708,0.0811046667491,0.0810278401129,0.080915969748,0.0810480576488,0.0811734063709,0.0809334916124,0.0809024913908,0.0811424061493,0.0812246241284,0.0813917557579,0.0814038862794,0.0815615830589,0.0813594077006,0.081362103372,0.0813998427723,0.0816909752883,0.0819228030325,0.081862150425,0.081862150425,0.0819848034757,0.0821735004768,0.0821950658484,0.0824821548572,0.0824673286643,0.0827180261086,0.0826802867084,0.0825441553004,0.0824888940358,0.082672199694,0.0826182862652,0.0827517220017,0.0830010716103,0.083157420554,0.0833555524052,0.083390596134,0.0833959874769,0.083366335091,0.0835496407492,0.0835429015706,0.083584684478,0.0837760771505,0.083788207672,0.0838448167724,0.0840294702663,0.0838165122222,0.084094166381,0.0843475594968,0.0844540385188,0.0845187346335,0.0847599972278,0.084676431413,0.0847438231991,0.0846117352983,0.0845672567195,0.0848570413998,0.0849958684792,0.0849837379577,0.0851966960018,0.0851535652587,0.085210174359,0.0853301317383,0.0853880886743,0.0858126569268,0.0860053974351,0.0861199634715,0.0859002662488,0.0859851798993,0.08586522252,0.0862223989864,0.0861860074219,0.0863477477086,0.0866954893249,0.0865526187383,0.0864852269522,0.0865189228453,0.0870108828839,0.0872427106281,0.0874987994153,0.08756349553,0.0876039306017,0.0876322351518,0.0875742782158,0.0878950631177,0.0881349778762,0.0880931949688,0.0879894116182,0.0881471083977,0.0879961507968,0.0878681064032,0.0879152806535,0.0879341503536,0.0878034102886,0.0878371061816,0.0880514120614,0.0885528069501,0.0891067674319,0.0896202928421,0.0902982542104,0.0912525219017,0.0922984424222,0.0934373636074,0.0950102878953,0.0963325147388,0.0975725236032,0.0989284463398,0.10001210626,0.101040504917,0.102102599466,0.102860083142,0.103414043623,0.103757741733,0.10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m <- 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ycorr <- 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altd  <- c(4, 310)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('Felis_catus-female-liver-H3K27Ac-ERR572257.50mers.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 4,310',bty='n')
dev.off()