# R script for Peak Model
#  -- generated by MACS
p <- c(0.0423803922653,0.0491890454489,0.0561112652574,0.0630628787806,0.0701427557861,0.0700946569802,0.0701654691111,0.070031861317,0.0700011315244,0.0701627969552,0.0697593014172,0.0701481000978,0.0702269286963,0.0702670110345,0.0701013373699,0.0703057572948,0.0703164459183,0.0704113074521,0.070413979608,0.0704246682315,0.0707987700547,0.0706477932475,0.0705796532725,0.070749335171,0.070995173512,0.0708669100297,0.0707466630151,0.0706411128578,0.0706330963902,0.0704340207771,0.0703819137374,0.0703779055036,0.0705088411417,0.0703859219712,0.070277699658,0.0702536502551,0.0702843800477,0.0703698890359,0.0702883882816,0.0703338149315,0.0703124376845,0.0704914721285,0.0705222019211,0.0706210716887,0.0706544736372,0.0706705065725,0.0706504654034,0.070681195196,0.0708428606268,0.0708121308341,0.0708615657179,0.0707466630151,0.0706825312739,0.0705596121034,0.0706691704945,0.0707373104695,0.0707199414563,0.0706731787284,0.0706237438446,0.0706892116636,0.0706304242343,0.0705489234799,0.0705903418961,0.0708562214062,0.0706117191431,0.0706705065725,0.0708482049385,0.0707867453533,0.0706905477416,0.0707667041842,0.0707787288856,0.0709243613811,0.07086022964,0.0708041143665,0.0709537550958,0.0709323778488,0.0709564272517,0.0711701997221,0.0712583808662,0.071106067981,0.071442759622,0.0713332012309,0.0713692753352,0.0711768801118,0.0712837663471,0.0713906525823,0.0713786278808,0.0711648554104,0.0712891106588,0.071306479672,0.0709898292002,0.0711661914883,0.0712236428398,0.0711995934368,0.0709764684208,0.070749335171,0.0706464571696,0.0707453269371,0.0707065806769,0.0707680402621,0.0709751323429,0.0708121308341,0.0707533434048,0.0707974339768,0.0710512887855,0.0711768801118,0.0712770859574,0.0713879804264,0.0713813000367,0.0714721533366,0.0712931188926,0.0713786278808,0.0714307349205,0.0715910642733,0.0716191219101,0.0716191219101,0.0715710231042,0.0717954841982,0.0718382386923,0.0718983621996,0.0720827409553,0.0720186092142,0.072136184073,0.0720252896039,0.0719451249275,0.0721401923068,0.0721615695538,0.0718462551599,0.0719504692393,0.0721295036833,0.0720707162539,0.0721709220994,0.0722350538405,0.0721882911126,0.0721655777876,0.0720373143054,0.0720092566686,0.0722604393214,0.0722457424641,0.0721054542803,0.0721816107229,0.0722844887243,0.0721963075803,0.0723512926213,0.0725102858962,0.0723339236081,0.0724154243625,0.0724221047522,0.0724100800507,0.072603811352,0.0726746234829,0.0727280666005,0.072872363018,0.0729231339798,0.0730634221635,0.0734695898573,0.0735136804294,0.0735176886632,0.0736072058852,0.073544410222,0.0735577710014,0.0735297133647,0.0735110082735,0.0734709259353,0.073388089103,0.0734401961427,0.0735070000397,0.0735297133647,0.0735965172617,0.0735350576764,0.0735764760926,0.073835675213,0.0738730853953,0.0739746273188,0.0739118316556,0.0737114199645,0.0735644513911,0.0735524266896,0.073633927444,0.0736165584308,0.0736005254955,0.0735818204043,0.0735858286381,0.0737515023027,0.0738009371865,0.0739519139938,0.0739532500717,0.0739038151879,0.0737528383807,0.0739104955776,0.0740200539687,0.0739666108511,0.0740213900467,0.0738864461747,0.0739652747732,0.0740441033717,0.0742164574259,0.0742057688024,0.0744409185199,0.0743741146229,0.0743113189597,0.0743620899214,0.0746480106007,0.0749833661637,0.0751530480621,0.0751517119841,0.0753588040649,0.0758424642793,0.0759961132424,0.0761497622055,0.0763154358701,0.0762660009863,0.0759520226704,0.075960039138,0.0760629171394,0.0762232464922,0.0762873782334,0.0760602449835,0.0758558250587,0.0759506865924,0.0759840885409,0.0761283849585,0.0763648707539,0.0764036170142,0.0763889201568,0.0765960122376,0.0766053647831,0.0767924156948,0.0769407203462,0.0772319853371,0.0773415437282,0.0774230444826,0.0778759749043,0.0777958102279,0.0778599419691,0.0776475055766,0.0778492533455,0.0779908776072,0.0780042383866,0.0780322960234,0.0781939614541,0.0782621014291,0.0781057803101,0.0784063978466,0.0786188342391,0.0787404173317,0.0788646725801,0.0788219180861,0.0790049607639,0.0791065026873,0.0791933477534,0.0795233590047,0.0796983852149,0.0797491561766,0.0799241823868,0.0801740289616,0.0800043470632,0.0802835873527,0.0803958178997,0.0805401143172,0.0805641637202,0.0805788605775,0.0805120566805,0.0806002378245,0.0804706382643,0.0805788605775,0.080924904764,0.0810277827654,0.0810785537272,0.0811360050786,0.0813270642241,0.0813764991078,0.0815261398372,0.0816356982283,0.0818908891148,0.0821193584426,0.0822275807558,0.0822543023146,0.0824667387071,0.0825776331761,0.0828595456215,0.0831013757287,0.0832630411595,0.0833071317315,0.0832603690036,0.0833445419139,0.0834474199153,0.083586372021,0.0836344708269,0.0836358069048,0.0835943884887,0.0835315928255,0.0835676669299,0.0836678727754,0.0839644820781,0.0838522515312,0.0840005561825,0.0844695195396,0.0848062111805,0.0853272815772,0.0859017950915,0.0866165967896,0.0876867952197,0.088798412066,0.0896775513507,0.0909321285366,0.0922535096196,0.0932609123865,0.0943351190505,0.0952877426219,0.0959758227611,0.096582402146,0.0970767509839,0.097353319117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m <- 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ycorr <- 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altd  <- c(269)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('Felis_catus-female-liver-H3K27Ac-ERR572171.50mers.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 269',bty='n')
dev.off()