# R script for Peak Model
#  -- generated by MACS
p <- c(0.0423346268541,0.0492706068301,0.0561837240785,0.0631740030325,0.0701628530661,0.0698542062439,0.0698384881187,0.0698399170392,0.0699656620408,0.0698827846534,0.069718458799,0.0697598974927,0.069875640051,0.0698027651069,0.0697298901627,0.069612718684,0.0696141476044,0.0694755423185,0.0693212189075,0.0693626576012,0.0693183610665,0.0692712066909,0.0692269101562,0.0693340791917,0.0692797802137,0.0693783757264,0.0691926160649,0.0692197655539,0.0689797069144,0.0690282902105,0.0690968783932,0.0690897337908,0.0690397215743,0.0689782779939,0.0690968783932,0.0690682999837,0.0690125720853,0.0690397215743,0.0691926160649,0.0690325769719,0.0688625354356,0.0689668466302,0.0690182877672,0.0689154054931,0.0689882804372,0.0690497240176,0.069292640498,0.0694026673744,0.0694083830563,0.0695684221493,0.0695812824335,0.0695055496485,0.0693698022035,0.0694541085114,0.069344081635,0.0692997851004,0.0693255056689,0.0692669199295,0.0691368881664,0.0691254568027,0.0692583464066,0.0692040474287,0.0693626576012,0.0692869248161,0.0692826380547,0.0691954739058,0.0691040229956,0.0691726111783,0.0694298168634,0.0694383903862,0.0690868759499,0.0692154787925,0.0690640132223,0.0692011895877,0.0691883293035,0.0693155032256,0.0693940938516,0.0693369370327,0.0692626331681,0.0691740400987,0.0694383903862,0.0692183366334,0.0692526307248,0.0691183122003,0.0690454372562,0.0691668954964,0.0690668710633,0.0687725134458,0.0686453395237,0.0687725134458,0.0686610576489,0.0688168099805,0.0688196678214,0.0689225500955,0.0689411260616,0.0687625110025,0.0687053541836,0.0687410771954,0.068628192478,0.0682995407693,0.0683095432126,0.0682266658251,0.0682995407693,0.068340979463,0.0683466951449,0.0683224034968,0.0684109965661,0.0686396238418,0.0689325525388,0.0691726111783,0.0693683732831,0.0694941182847,0.0694955472052,0.0693640865216,0.0693755178854,0.0693912360106,0.0694369614658,0.0693083586232,0.0691926160649,0.0692869248161,0.069398380613,0.069452679591,0.06926834885,0.0694598241933,0.0694426771477,0.0694583952729,0.0694455349886,0.0695741378312,0.069528412376,0.0694098119768,0.0693955227721,0.0691711822578,0.0692369125996,0.0690897337908,0.0691969028263,0.0691668954964,0.0692197655539,0.0691468906098,0.0692526307248,0.0693798046469,0.0692640620885,0.0694269590225,0.0695026918075,0.0695026918075,0.0695912848769,0.0695912848769,0.0696455838548,0.0697984783454,0.0697413215265,0.0697298901627,0.0695469883422,0.0695384148194,0.0695941427178,0.0695970005588,0.0695569907855,0.0695112653304,0.0693569419193,0.0692326258381,0.0694326747044,0.0694469639091,0.0696827357871,0.0697070274352,0.0696941671509,0.0698513484029,0.0697470372084,0.0698556351644,0.069929939029,0.069957088518,0.0699427993132,0.070008529655,0.0701485638613,0.0702000049984,0.0703186053976,0.0703457548866,0.0706043894922,0.0707515683009,0.0709416147239,0.0711959625681,0.0711087984192,0.071304560524,0.0711888179657,0.0709801955766,0.0709530460876,0.0709387568829,0.070987340179,0.0710102029066,0.0711145141011,0.0710559283617,0.071277411035,0.0711488081924,0.0714245898437,0.0716575038808,0.0718504081447,0.0718561238266,0.0718504081447,0.0719361433731,0.0719161384865,0.0720461702495,0.0719532904188,0.0720118761581,0.0719961580329,0.0722305009905,0.0723305254236,0.0726448879277,0.0725348610513,0.0728606549191,0.0728878044081,0.0729492479884,0.0732164561169,0.0733350565162,0.0734808064044,0.0737322964077,0.0737022890777,0.0737080047596,0.0739566369219,0.0736851420321,0.0737894532266,0.0738966222621,0.0741438255039,0.0742238450504,0.0741309652196,0.0740652348779,0.0740981000488,0.074113818174,0.0742052690842,0.0742424210165,0.0744724772127,0.0746353741466,0.0745253472702,0.0747239672159,0.0750011777877,0.0750226115948,0.0750983443799,0.0750683370499,0.0753726971107,0.0757256404675,0.0757413585927,0.0757442164337,0.0757056355809,0.0756942042171,0.0758013732526,0.0758228070597,0.07609573087,0.0763815149646,0.0761414563252,0.0761628901323,0.0763057821796,0.0763729414418,0.0766058554789,0.0766187157632,0.0765344094552,0.0767673234923,0.0769230758239,0.0769516542334,0.0771502741791,0.0770459629846,0.0771659923043,0.0771574187815,0.0774860704903,0.0777261291297,0.0778032908353,0.0779661877692,0.0780962195323,0.0783891482292,0.078506319708,0.0786163465844,0.0785391848789,0.0789035595995,0.0788964149971,0.0790707432949,0.0795008483572,0.0795165664824,0.0795279978462,0.0795922992675,0.0798094951794,0.0801595806953,0.0802324556394,0.0801752988205,0.0800967081945,0.0800795611488,0.0801667252977,0.0803053305835,0.0802410291623,0.0803982104143,0.0806825655884,0.0808683252499,0.0812784254257,0.0817185329314,0.0818285598078,0.081950018048,0.0818028392393,0.0819300131614,0.0824372799293,0.0825501646466,0.0824615715773,0.0825072970325,0.082533017601,0.0828959634011,0.0834875364769,0.0842534378505,0.0850250549059,0.0857052210511,0.0866068698695,0.0875228078927,0.0888174098413,0.0901291588355,0.091505209251,0.0922368165332,0.0932927887628,0.0939400897371,0.0950932285588,0.0958562720914,0.0962163600506,0.0965221490318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m <- 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ycorr <- 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altd  <- c(256)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('Cavia_porcellus-male-liver-H3K27Ac-ERR572281.50mers.unique.MACS2_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 256',bty='n')
dev.off()