Index of /kundaje/marinovg/oak/cs273b-2017-Fall/Group13/2017-10-16-files/hg19

	Name	Last modified	Size	Description
	Parent Directory		-
	BAM-header-hg19	2011-12-24 03:31	671
	BAM-header-hg19-randoms-single-cell-spikes2	2011-09-23 06:41	884
	BAM-header-hg19-single-cell-spikes.SAM	2013-02-03 17:01	1.9K
	BAM-header-hg19.2	2011-12-24 03:32	671
	BAM-header-hg19.3	2012-01-04 06:03	671
	GENCODE-v4-rRNA.fasta	2010-12-09 18:04	124K
	GENCODE-v4-rRNA.gtf	2010-12-09 17:38	555K
	TopHat-fusion-annotations/	2014-11-15 05:40	-
	bismarck_indexes-hg19-female/	2018-02-07 17:18	-
	bismarck_indexes-hg19-male/	2018-02-07 20:50	-
	bowtie-indexes/	2019-07-19 20:04	-
	bowtie2-indexes/	2017-03-14 07:13	-
	bwa-indexes/	2019-10-11 16:08	-
	cpgIslandExt.txt	2009-04-27 21:49	1.7M
	female.hg19.chrom.bed	2011-02-26 17:14	410
	female.hg19.chrom.sizes	2010-03-10 19:45	362
	gap.txt	2009-04-27 20:43	23K
	gencode/	2017-05-04 14:47	-
	hg19-CISTEMATIC-genes.txt	2010-06-25 11:10	1.2M
	hg19-TSS-500bp-radius-unique.bed	2009-12-16 19:36	1.2M
	hg19-TSS-500bp-radius.bed	2009-12-16 19:28	2.8M
	hg19-female-single-cell-NIST-fixed-spikes.chrom.sizes	2013-04-22 06:56	1.9K
	hg19-female-single-cell-NIST-spikes.chrom.sizes	2012-12-23 09:41	1.9K
	hg19-male-single-cell-NIST-fixed-spikes.chrom.sizes	2013-04-22 06:56	1.9K
	hg19-male-single-cell-NIST-spikes.chrom.sizes	2012-12-23 09:41	1.9K
	hg19-male.chrom.sizes	2017-02-17 01:30	376
	hg19-refSeq.TSS	2011-03-18 17:02	859K
	hg19-refSeq.genes	2010-12-24 05:08	1.1M
	hg19-refSeq.gtf	2010-12-24 05:07	69M
	hg19-refSeq.juncs	2011-11-17 13:15	18M
	hg19-refSeq.no_haps.gtf	2011-09-21 09:16	66M
	hg19-refSeq.no_haps.juncs	2011-11-17 13:14	17M
	hg19-refSeq.no_haps.transcripts.fa	2011-10-25 02:14	95M
	hg19-refSeq.withNames+spikes.gtf	2013-06-24 19:15	98M
	hg19-refSeq.withNames.3p500bp+spikes.gtf	2013-06-24 19:15	7.1M
	hg19-refSeq.withNames.3p500bp.gtf	2012-05-09 22:13	7.1M
	hg19-refSeq.withNames.3p1000bp+spikes.gtf	2013-06-24 19:15	12M
	hg19-refSeq.withNames.3p1000bp.fa	2013-10-13 12:32	32M
	hg19-refSeq.withNames.3p1000bp.gtf	2012-05-09 22:13	12M
	hg19-refSeq.withNames.gtf	2011-12-17 00:21	98M
	hg19-refSeq.withNames.gtf.autosomal.genes	2013-01-30 12:00	1.3M
	hg19-refSeq.withNames.gtf.chrM.genes	2013-01-30 12:00	136
	hg19-refSeq.withNames.gtf.chrX.genes	2013-01-30 12:00	62K
	hg19-refSeq.withNames.gtf.chrY.genes	2013-01-30 12:00	6.6K
	hg19-refSeq.withNames.juncs	2011-12-17 00:21	14M
	hg19.UCSC-2012-10-22.gtf	2012-10-23 22:23	148M
	hg19.chrom.bed	2014-08-18 10:20	2.1K
	hg19.chrom.male.nochrM.sizes	2018-10-24 21:34	365
	hg19.chrom.sizes	2019-07-05 02:09	1.9K
	hg19.humansESTs.juncs.bz2	2011-10-28 08:26	72M
	hg19.no_haps.chrom.sizes	2018-11-25 04:39	1.7K
	hg19.refFlat-2012-10-22.TSS-0bp.bed	2017-07-24 22:10	1.4M
	hg19.refFlat-2012-10-22.chrom.sizes	2014-04-05 20:26	2.9M
	hg19.refFlat-2012-10-22.fa	2013-08-01 13:19	130M
	hg19.refFlat-2012-10-22.gtf	2012-10-23 22:21	82M
	hg19.refFlat-2012-10-22.juncs	2012-10-23 22:27	15M
	hg19.refFlat-2012-10-22.no_haps.TSS-0bp.bed	2017-09-22 19:21	1.4M
	hg19.refFlat-2012-10-22.no_haps.chrom.sizes	2014-04-06 20:57	2.9M
	hg19.refFlat-2012-10-22.no_haps.fa	2014-04-06 20:57	125M
	hg19.refFlat-2012-10-22.no_haps.genes	2017-05-06 17:24	922K
	hg19.refFlat-2012-10-22.no_haps.gtf	2014-04-06 20:56	77M
	hg19.refFlat-2012-10-22.no_haps.gtf.CDS	2014-04-21 18:55	33M
	knownGene-female.txt	2010-03-16 08:10	18M
	knownGene.txt	2009-12-07 23:29	19M
	knownGenes.gtf	2010-12-09 23:55	149M
	knownGenes.juncs	2011-11-17 13:15	34M
	knownToLocusLink.txt	2009-12-06 22:01	1.1M
	knownToRefSeq.txt	2009-12-06 22:05	1.5M
	liftOver-chain-files/	2018-07-19 19:43	-
	male.hg19.chrom.bed	2011-02-26 17:14	426
	male.hg19.chrom.sizes	2010-03-10 19:45	376
	male.hg19.single-cell-spikes.chrom.sizes	2011-10-18 23:58	486
	male.hg19.single-cell-spikes.chrom.sizes.fai	2012-11-09 08:34	0
	mappability/	2018-01-29 22:24	-
	multiz100way/	2021-07-26 11:23	-
	nestedRepeats.txt	2009-04-27 21:43	59M
	phastCons100way/	2018-05-11 02:25	-
	refFlat.txt	2010-08-23 16:32	8.7M
	refGene.protein_coding.TSS.GeneBody.txt	2012-06-04 10:51	3.1M
	refGene.protein_coding.txt	2012-06-04 08:14	9.7M
	refGene.txt	2011-02-21 20:36	10M
	refMrna.withNames.chromSizes	2012-06-24 04:59	751K
	refMrna.withNames.fa	2012-02-25 15:46	103M
	refMrna.withNames.fa.fai	2012-03-28 01:17	1.2M
	refMrna.withNames.noPolyA.chromSizes	2012-06-24 04:59	754K
	refMrna.withNames.noPolyA.fa	2012-06-24 10:30	103M
	refMrna.withNames.noPolyA.fa.fai	2012-06-24 05:57	0
	refSeqAli.txt	2011-02-21 20:45	9.6M
	refSeqStatus.txt	2011-02-21 21:28	8.2M
	refSeqSummary.txt	2011-02-21 20:46	24M
	repeatMasker/	2019-07-09 23:46	-
	sequence/	2017-05-10 19:48	-
	simpleRepeat.txt	2009-04-27 21:58	85M
	tf-dragonn-JI.txr.gz	2018-01-10 23:43	1.2G
	tf-dragonn-JI/	2017-12-20 20:17	-
	tf-dragonn-old/	2017-12-13 23:51	-
	tf-dragonn/	2018-05-11 08:53	-
	transcriptome-indexes/	2017-03-14 07:18	-