B XM\@sdZddlmZmZmZddlZddlZddlmZddl m Z m Z m Z m Z ddlmZmZmZmZmZmZmZmZmZmZddlZddlZddlZddlZddlZddlZddlZddl Z yddl m!Z"Wn e#k rddl m"Z"YnXdd l$m%Z%m&Z&dd l'm(Z(dd l)m*Z*m+Z+m,Z,m-Z-dd l.m/Z/m0Z0dd l1m2Z2m3Z3ddl4m5Z5m6Z6dZ7dZ8dZ9dZ:dZ;dZdZ?dZ@dddddddd d!d"d#d$d%d&d'd(d)d*d+d,gZAd-ZBd.ZCeDd/ZEd0d1d2d3d4d5d6ZFd7d8ZGd9d:ZHd;d<ZId=d>ZJd?d@ZKdAdBZLdCdDZMdEdFZNdGdHZOdjdJdKZPdkdLdMZQdldOdPZRdQdRZSdSdTZTdUdVZUdWdXZVdmd]d^ZWd_d`ZXdndbdcZYdodddeZZdfdgZ[dhdiZ\dS)pz6 Tools for converting Cran packages to conda recipes. )absolute_importdivisionprint_functionN)chain)makedirslistdirsepenviron) basename commonprefixexistsisabsisdirisfilejoinnormpathrealpathrelpath) CSafeDumper) SafeDumper)sourcemetadata)get_or_merge_config) text_type iteritemsTemporaryDirectorycc_conda_build)allowed_license_familiesguess_license_family)rm_rf ensure_list)get_package_variantsDEFAULT_VARIANTSzQ {archive_keys} {git_url_key} {git_url} {git_tag_key} {git_tag} {patches} z* url: {cranurl}{sel} {hash_entry}{sel} z+{{% set version = '{cran_version}' %}}{sel}aU{version_source} {version_binary1} {version_binary2} {{% set posix = 'm2-' if win else '' %}} {{% set native = 'm2w64-' if win else '' %}} package: name: {packagename} version: {{{{ version|replace("-", "_") }}}} source: {source} {binary1} {binary2} build: merge_build_host: True{sel_src_and_win} # If this is a new build for the same version, increment the build number. number: {build_number} {noarch_generic} # This is required to make R link correctly on Linux. rpaths: - lib/R/lib/ - lib/ {script_env} {suggests} requirements: build:{build_depends} host:{host_depends} run:{run_depends} test: commands: # You can put additional test commands to be run here. - $R -e "library('{cran_packagename}')" # [not win] - "\"%R%\" -e \"library('{cran_packagename}')\"" # [win] # You can also put a file called run_test.py, run_test.sh, or run_test.bat # in the recipe that will be run at test time. # requires: # Put any additional test requirements here. about: {home_comment}home:{homeurl} license: {license} {summary_comment}summary:{summary} license_family: {license_family} {license_file} {extra_recipe_maintainers} # The original CRAN metadata for this package was: {cran_metadata} # See # http://docs.continuum.io/conda/build.html for # more information about meta.yaml a&#!/bin/bash # 'Autobrew' is being used by more and more packages these days # to grab static libraries from Homebrew bottles. These bottles # are fetched via Homebrew's --force-bottle option which grabs # a bottle for the build machine which may not be macOS 10.9. # Also, we want to use conda packages (and shared libraries) for # these 'system' dependencies. See: # https://github.com/jeroen/autobrew/issues/3 export DISABLE_AUTOBREW=1 # R refuses to build packages that mark themselves as Priority: Recommended mv DESCRIPTION DESCRIPTION.old grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION $R CMD INSTALL --build . # Add more build steps here, if they are necessary. # See # http://docs.continuum.io/conda/build.html # for a list of environment variables that are set during the build process. a #!/bin/bash if {source_pf_bash}; then export DISABLE_AUTOBREW=1 mv DESCRIPTION DESCRIPTION.old grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION $R CMD INSTALL --build . else mkdir -p $PREFIX/lib/R/library/{cran_packagename} mv * $PREFIX/lib/R/library/{cran_packagename} if [[ $target_platform == osx-64 ]]; then pushd $PREFIX for libdir in lib/R/lib lib/R/modules lib/R/library lib/R/bin/exec sysroot/usr/lib; do pushd $libdir || exit 1 for SHARED_LIB in $(find . -type f -iname "*.dylib" -or -iname "*.so" -or -iname "R"); do echo "fixing SHARED_LIB $SHARED_LIB" install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5.0-MRO/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libR.dylib "$PREFIX"/lib/R/lib/libR.dylib $SHARED_LIB || true install_name_tool -change /usr/local/clang4/lib/libomp.dylib "$PREFIX"/lib/libomp.dylib $SHARED_LIB || true install_name_tool -change /usr/local/gfortran/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true install_name_tool -change /usr/local/gfortran/lib/libquadmath.0.dylib "$PREFIX"/lib/libquadmath.0.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib "$PREFIX"/lib/libgfortran.3.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libgcc_s.1.dylib "$PREFIX"/lib/libgcc_s.1.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libiconv.2.dylib "$PREFIX"/sysroot/usr/lib/libiconv.2.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libncurses.5.4.dylib "$PREFIX"/sysroot/usr/lib/libncurses.5.4.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libicucore.A.dylib "$PREFIX"/sysroot/usr/lib/libicucore.A.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libexpat.1.dylib "$PREFIX"/lib/libexpat.1.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libcurl.4.dylib "$PREFIX"/lib/libcurl.4.dylib $SHARED_LIB || true install_name_tool -change /usr/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true install_name_tool -change /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libc++.1.dylib "$PREFIX"/lib/libc++.1.dylib $SHARED_LIB || true done popd done popd fi fi zo#!/bin/bash mkdir -p $PREFIX/lib/R/library/{cran_packagename} mv * $PREFIX/lib/R/library/{cran_packagename} fi z9"%R%" CMD INSTALL --build . IF %ERRORLEVEL% NEQ 0 exit 1 aif "%target_platform%" == "win-64" goto skip_source_build "%R%" CMD INSTALL --build . IF %ERRORLEVEL% NEQ 0 exit 1 exit 0 :skip_source_build mkdir %PREFIX%\lib\R\library robocopy /E . "%PREFIX%\lib\R\library\{cran_packagename}" if %ERRORLEVEL% NEQ 1 exit 1 exit 0 z - ZSiteZArchsDependsZEnhancesImportsLicenseLicense_is_FOSSLicense_restricts_use LinkingToZMD5sumNeedsCompilationZOS_typePackageZPathZPrioritySuggestsVersionZTitleZAuthorZ Maintainer)baseZcompilerZdatasetsZgraphicsZ grDevicesZgridmethodsZparallelZsplinesZstatsZstats4ZtcltkZtoolsZutils)ZMASSZlatticeZMatrixZnlmeZsurvivalZbootZclusterZ codetoolsZforeignZ KernSmoothZrpartclassZnnetZspatialZmgcvz^\s*(?P[a-zA-Z0-9.+\-]{1,})(\s*\(\s*(?P[>=<]+)\s*(?P[0-9a-zA-Z:\-+~.]+)\s*\))?(\s*\[(?P[\s!\w\-]+)\])?\s*$z =~ linux.*z == linux-32z == linux-64z == win-32z == win-64z == osx-64)linuxZlinux32Zlinux64win32win64osxcCsdS)NT) package_namer4r49lib/python3.7/site-packages/conda_build/skeletons/cran.pypackage_exists sr7cCsR|jddtjd}|jdddd|jdd d d |jd d dd |jddd|jddd|jddd|jdddd|jddd|jdddd|jd d!d|jd"d#d$d%d&|jd'dd(d)d*|jd+dd,d|jd-dd.d|jd/d0d1d2d*|jd3d0d4d5d*|jd6dd7d|jd8d9d:d;dd?td@ddAddS)BNcranz Create recipe skeleton for packages hosted on the Comprehensive R Archive Network (CRAN) (cran.r-project.org). )helpZformatter_classpackages+z-CRAN packages to create recipe skeletons for.)nargsr9z --output-dirz5Directory to write recipes to (default: %(default)s)..)r9defaultz--output-suffixzLSuffix to add to recipe dir, can contain other dirs (eg: -feedstock/recipe).z--add-maintainerz@Add this github username as a maintainer if not already present.)r9z --versionz(Version to use. Applies to all packages.z --git-tagz"Git tag to use for GitHub recipes.z --all-urls store_truez`Look at all URLs, not just source URLs. Use this if it can't find the right URL.)actionr9z --cran-urlz+URL to use for as source package repositoryz --r-interpzr-basezDeclare R interpreter package)r>r9z--use-binaries-verzURepackage binaries from version provided by argument instead of building from source.z--use-when-no-binary)srcoldzsrc-oldzold-srcerrorrBaSometimes binaries are not available at the correct version for a given platform (macOS). You can use this flag to specify what fallback to take, either compiling from source or using an older binary or trying one then the other.)choicesr>r9z--use-noarch-genericuse_noarch_genericz?Mark packages that do not need compilation as `noarch: generic`)rAdestr9z--use-rtools-winz/Use Rtools when building from source on Windowsz --recursivez=Create recipes for dependencies if they do not already exist.z--no-recursiveZ store_false recursivezCDon't create recipes for dependencies if they do not already exist.z --no-archivearchivez&Don't include an Archive download url.z--version-comparezCompare the package version of the recipe with the one available on CRAN. Exits 1 if a newer version is available and 0 otherwise.z--update-policyZstore)rDzskip-up-to-datez skip-existing overwritezmerge-keep-build-numzmerge-incr-build-numrDaDictates what to do when existing packages are encountered in the output directory (set by --output-dir). In the present implementation, the merge options avoid overwriting bld.bat and build.sh and only manage copying across patches, and the `build/{number,script_env}` fields. When the version changes, both merge options reset `build/number` to 0. When the version does not change they either keep the old `build/number` or else increase it by one.)rArEr>r9z-mz--variant-config-filesZskeleton_config_yamlz}Variant config file to add. These yaml files can contain keys such as `cran_mirror`. Only one can be provided here.) add_parserargparseZArgumentDefaultsHelpFormatter add_argumentrget)Zreposr8r4r4r6rK)s  rKc Cs~i}xl|D]d}|sq y.d|kr0|dd\}}n|dd\}}Wn"tk rdtd|YnX|||<q W||d<|S)Nz: :z$Error: Could not parse metadata (%s) orig_lines)split ValueErrorsysexit)linesdlinekvr4r4r6dict_from_cran_liness  r[cCsd}d}d}d}d}|dxt|D]\}}||rd|}|rd|sRt||7}d||<qd}|d}|||}d}d||<q(|r(|st|||<d}d}d}q(W|rdd |D}|d|S) aw >>> chunk = [ 'Package: A3', 'Version: 0.9.2', 'Depends: R (>= 2.15.0), xtable, pbapply', 'Suggests: randomForest, e1071', 'Imports: MASS, R.methodsS3 (>= 1.5.2), R.oo (>= 1.15.8), R.utils (>=', ' 1.27.1), matrixStats (>= 0.8.12), R.filesets (>= 2.3.0), ', ' sampleSelection, scatterplot3d, strucchange, systemfit', 'License: GPL (>= 2)', 'NeedsCompilation: no'] >>> remove_package_line_continuations(chunk) ['Package: A3', 'Version: 0.9.2', 'Depends: R (>= 2.15.0), xtable, pbapply', 'Suggests: randomForest, e1071', 'Imports: MASS, R.methodsS3 (>= 1.5.2), R.oo (>= 1.15.8), R.utils (>= 1.27.1), matrixStats (>= 0.8.12), R.filesets (>= 2.3.0), sampleSelection, scatterplot3d, strucchange, systemfit, rgl,' 'License: GPL (>= 2)', 'NeedsCompilation: no'] )  NFr?r\TrOcSsg|] }|r|qSr4r4).0cr4r4r6 sz5remove_package_line_continuations..)append enumerate startswithlstripAssertionError)chunkZ continuationZ continued_ixZcontinued_lineZhad_continuationZaccumulating_continuationsirXr4r4r6!remove_package_line_continuationss8       rhcCstj|tdddddS)a Quote a string for use in YAML. We can't just use yaml.dump because it adds ellipses to the end of the string, and it in general doesn't handle being placed inside an existing document very well. Note that this function is NOT general. )ZDumperz ... r? z )yamldumprreplace)stringr4r4r6yaml_quote_strings rncCsJg}d}x6|D]*}|}|dkr.|dks8|||}qWd|S)Nr?ri) splitlinesrstriprar)rmrV last_linerXr4r4r6clear_whitespace s rrc Cs|d|d}||}y |WnBtjjk rh}z |jjdkrVtd|Wdd}~XYnX|j }t t | }||d<|S)Nz/web/packages/z /DESCRIPTIONizERROR: %s (404 Not Found)orig_description) rNraise_for_statusrequests exceptionsZ HTTPErrorresponseZ status_coderTrUtextr[rhro)cran_urlpackagesessionurlre DESCRIPTIONrWr4r4r6get_package_metadatas   rcCstjddddddgtjtj|jd}|\}}|d}|d}|sN|jr\td || }|svtd t d |d |d S) Ngitz for-each-refz refs/tagsz--sort=-committerdatez--format=%(refname:short)z --count=1)stdoutstderrcwdzutf-8zError: git tag failed (%s)zError: no tags foundz Using tag %s) subprocessPopenPIPEwork_dir communicatedecode returncoderTrUstriproprint)configprrZtagsr4r4r6get_latest_git_tag$s         rcCstdddkS)zGets whether the SSL_NO_VERIFY environment variable is set to 1 or True. This provides a workaround for users in some corporate environments where MITM style proxies make it difficult to fetch data over HTTPS. Z SSL_NO_VERIFYr?)1true)r rNrlowerr4r4r4r6_ssl_no_verify:srTcCsft}t|_yddl}ddl}Wn tk rD|r@tdYnX|j||j t |dd}|S)NrzRTip: install CacheControl and lockfile (conda packages) to cache the CRAN metadataz .web_cache)cache) ruZSessionrZverify cachecontrolZcachecontrol.caches ImportErrorrZ CacheControlZcachesZ FileCacher) output_dirverboser{rr4r4r6 get_sessionCs   rcCs`t||d}|rtd|||d}||j}dd|dD}ddtt|DS) N)rzFetching metadata from %sz/src/contrib/PACKAGEScSsg|]}t|qSr4)rhro)r^rgr4r4r6r`[sz%get_cran_metadata..z cSsi|]}||dqS)r*)r)r^rWr4r4r6 ]sz%get_cran_metadata..)rrrNrtrxrRmapr[)ryrrr{r}ZPACKAGES package_listr4r4r6get_cran_metadataTs   rFcCslg}y||g}Wng}YnX|s.|rF||dddx |D]}|djt|dqLW|S)N/rrPz{indent}{old_val})indentold_val) get_valuerarRformatINDENT)mkeyZ allow_emptyresultZold_valsrr4r4r6 make_arrayas  rcCsxd}tt||r"tt||}nRtt|||rHtt|||}n,tt|d||rttt|d||}|S)Nzr-)r rr)r output_suffixrzrr4r4r6existing_recipe_dirnsrcCs ||r|dt| S|S)N)endswithlen)rmendr4r4r6 strip_endys rc Cst|r dStd|t|d}t|t}d|kr>t|d}t|}t|d}|rbt||}|drx|dd}|d r|d d }t|}t d | d }t ||d|}ntt |rt ||f}||krtd ||f|}t ||d|}n0d|kr"|}t ||d|}nt |||}}|rZyt|} Wnd} YnXnd} |} |r| rd|kr| dd } d| kr| }| dd} t|d||} td||| f||| | | dS)a Converts `package` (*) into a tuple of: pkg_name (without leading 'r-') location (in a subdir of output_dir - may not exist - or at GitHub) old_git_rev (from existing metadata, so corresponds to the *old* version) metadata or None (if a recipe does *not* already exist) (*) `package` could be: 1. A package name beginning (or not) with 'r-' 2. A GitHub URL 3. A file:// URL to a tarball 4. A relative path to a recipe from output_dir 5. An absolute path to a recipe (fatal unless in the output_dir hierarchy) 6. Any of the above ending (or not) in sep or '/' So this function cleans all that up: Some packages may be from GitHub but we'd like the user not to have to worry about that on the command-line (for pre-existing recipes). Also, we may want to get version information from them (or existing metadata to merge) so lets load *all* existing recipes (later we will add or replace this metadata with any that we create). NzParsing input package %s:rz github.comz.gitz -feedstockzr-zfile://r?z (.*)_(.*)rOz;package %s specified with abs path outside of output-dir %szsource/git_urlzsource/git_revz).. name: %s location: %s new_location: %s)zpkg-namelocationz old-git-revz old-metadataz new-location)rrrrr rrcrlrematchgrouprr r RuntimeErrorrMetaDatarr) rrgit_tagrzpkg_namerZ pkg_filenameZexisting_locationZcommpr old_git_revgit_urlZ new_locationr4r4r6package_to_inputs_dicts`                   rc sddlddlmdiffdd }|d|d}|d}|||}xr|D]j}t|}|d \}} } | |\} } } ||d kr|d || |fqP| |fg|d |<qPWdS) Nr) BeautifulSoupr?csLj|d}|jr|j}n|S|d}fdd|dD}|S)N)paramsz html.parsercs*g|]"}|dr|dqS)Zhref)rNr)r^Znode)extr|r4r6r`szAget_available_binaries..get_url_paths..a)rNokrxrtZfind_all)r|rrrwZ response_textZsoupparent)rru)rr|r6 get_url_pathss z-get_available_binaries..get_url_pathsrdirr_binaries)ruZbs4rr rpartitionrextend) ryZdetailsrr|rrrfilenamepkgrverr4)rrur6get_available_binariess     rr=r?r-baserBceCs|dkr8|dkr8|dkr8|dkr8td|tdt|}t||d}|st}t||d}WdQRXt| d t d d}t |dkr| rt d | dkr|st d i}g}| d }t||}d dddddd| d| rdndddd| d| r dnddd}x>t|D]2\}}t|d<|dkr"|dr"t||q"Wx8|D]0}t||||}|r^||dd|iiq^Wx |D]\}}||qWx|r~||d}|d}|d} |od |k}!|ot|ot|}"|d}#|d!}$td"| |!s0|"rt|j|!r tjjdd#|ii|d$}%t |%!d|%j"j#|%j"j|r~|nt$|}&t%j&d%d&|&gt%j't%j'|jd'}'|'(\}(})|()d(}(|))d(})|'j*rtd)|&|)+f|(rt|(tj,d*|)rHt|)tj-d*n|/d?<| r t| |$|/d? g}2g}3g}4d}5| =d@r|dAr|dA}%t>|%dB}2t>|%dC}3t>|%dD|}4|%?|/d?krt@|%AdEd}5|5| dFkrdnd7}5|rdGjtB|dH}6|6|4krt |4st>idDd}4|4|6t |4r|4ddC|4DddId40|4|/dJ<d40|2|/dK<d40|3|/dL<|5|/dM<d}7tEF|}8i}9xPt|8D]B\}}d4}:|/d<|d<<|/d?|d?<|dkrzdn$||dko|/d<|d|dk};|;sV|dkrtdNtdn|=drV||dkr|Gdrd};d|d<qFntdOtd|d|d.d|dP<|d|d.d|d?<|d?d=|d<<d};d}7tHI}<|drF|;rF|"rtJ|}=tK||$}:|:}>}?|}7n|!r|dkrTdQ||d<|dR}@dS||dR}=dT|dU}:|dV|dU}>|>|@}?tdW||?y&tL|j/d4|?|d=|@dX\}7}AWn$tdY|?tdYnXi}B|dZ|BdZ<|d<|Bd<<|d?|Bd?<|7r|<t2|7d[4|?|dP<|=|Bd\<|:|Bd]<|>|Bd^<d_||/dd7<|1 ddk r^|/dd7<d|1k rd4|/d<dktV|1d|/d<n,d4|/d<|! rd||/d<nd||/d<| r|1 dddk rd4|/d<nd|/d<d|1k rd4|/d<dktV|1d|/d<d|1k rd|1d|/d<nd4|/d<dd|1 dd41dD}Mdd|1 dd41dD}Ndd|1 dd41dD}Oi}PtW}QxtXtY|N|M|OD]}RtZ[|R}S|S std||Rf|S\d}T|T|Qk rԐ q|Q]|T|S\d}U|S\d pd4}V|S\d9pd4}W|W}W|Vr$|Ws$t^|Urd|PkrBd}\|\rLd}[x*dD] }_g}`|_dkr"|[r|`djtB|Ld|\r|`djtB|Ld|Zr|`djtB|Ld|rd}[}\}Z}]}^|`djtB|Kd|[s|\s|Zr |`djtB|Kd|]s|^s|Xr0|`djtB|Kd|XrH|`djtBd|]r|`djtB|Kd|`djtB|Kd|`djtB|Jd|`djtB|Ld|`djtB|Kd|`djtBd|^r |`djtB|Jd|]s|`djtB|Kd|`djtB|Kd|`djtB|Kdn0|_dkrR|[s>|\s>|ZrR|`djtB|Kd|_dksf|_dkrbxt`|PD]}T|Ttakrqp|Tdkr|`DddjtB| d΍nd3|T8}a|P|Tr|`dj|a|P|TtBdЍn|`dj|atBdҍ|rp|T8}b|b|krpt||||b}|b|dks2t^d|T|df|b|ks@t^||bd|ii||bqpWd40|`|/d|_<qTWqWx8|D].}||}/|/dd!}$tb|$r| s| dkrtcd|$n| dkrt|$n@| dkrtd||/ddArqn| dkr|/ddArq|/dy}cddڄt|/D}/ytet0|$Wn YnXtd|8t2t0|$d܃d݃}-|-ft3tgjf|/WdQRXtbt0|$dރr| dkrBt2t0|$dރd݃z}-|cthkr|-ftijf|/nV|cgkr|-ftjjf|/n8dd|cD}dd0dd|dD|/d<|-ftkjf|/WdQRXtbt0|$dr\| dkrt2t0|$dd݃D}-t dd|cDdkr|-ftljf|/n|-ftmjf|/WdQRXqWdS)NrDrBrCzold-srcz2ERROR: --use_when_no_binary={} not yet implementedrO)variant_config_filesrZ cran_mirrorz7--version-compare only works with one package at a timez%At least one package must be suppliedrz{others}z src/contrib/z.tar.gzT)selectorrruse_thisr2zbin/windows/contrib/{}/z.zipFr3z!bin/macosx/el-capitan/contrib/{}/z.tgz)rzwin-64zosx-64rrrzpkg-nameinputsrz github.comz new-locationzMaking/refreshing recipe for {}r)rrZcheckout)rrrzutf-8z2Error: 'git checkout %s' failed (%s). Invalid tag?)filer|rrrzJ%s does not appear to be a valid R package (no DESCRIPTION file in %s, %s)rsr*zPackage %s not foundzr-r?#) Zcran_packagenameZ packagenamepatches build_numberZ build_dependsZ host_dependsZ run_depends home_commenthomeurlsummary_commentsummaryZbinary1Zbinary2versionz2Package versions from CRAN are not yet implementedr,Z cran_version-rZ conda_versionmergez old-metadatazsource/patcheszbuild/script_envzextra/recipe-maintainersz build/numberzmerge-incr-build-numz{indent}{add_maintainer})radd_maintainerz extra: extra_recipe_maintainersr script_envrz=ERROR: --use-when-no-binary is error (and there is no binary)zfERROR: No binary nor old binary found (maybe pass --use-when-no-binary=old-src to fallback to source?)Zcranurlz{}_{}{}rz{}_{{{{ version }}}}z{{{{ cran_mirror }}}}/{}rz/{}zDownloading {} from {})r|fnzHlogic error, file {} should exist, we found it in a dir listing earlier.rrbr contrib_urlcontrib_url_renderedz sha256: {}Z hash_entry cached_pathZurl_keyzgit_url:Z git_url_keyzgit_tag:Z git_tag_keyz=# You can add a hash for the file here, (md5, sha1 or sha256)rZ archive_keyszurl:r\r0r1z # [win]z # [not win]z # [z or ]css|]}|dr|VqdS)winN)rc)r^fsr4r4r6 szskeletonize..css|]}|ds|VqdS)rN)rc)r^rr4r4r6rssel_srcsel_src_and_winsel_src_not_win from_sourceselz Archive/{}/z/{url_key}{sel} {cranurl} {hash_entry}{sel}ricSsg|]}|rd|qS)z# %sr4)r^lr4r4r6r`:szskeletonize..rQ cran_metadataZversion_binary1Zversion_binary2Zversion_sourceZbinaryZversion_binaryr%NonelicenseZlicense_family license_filer&z (FOSS)r'Zyesz (Restricts use)ZURLrrz {}z& https://CRAN.R-project.org/package={}r)ZnoZnoarch_genericznoarch: genericZ Descriptionrrr+z# Suggests: %sZsuggestscSsg|]}|r|qSr4)r)r^sr4r4r6r`osr#,cSsg|]}|r|qSr4)r)r^rr4r4r6r`qsr$cSsg|]}|r|qSr4)r)r^rr4r4r6r`ssr(z1Could not parse version from dependency of %s: %snamearchsrelopz@Don't know how to handle archs from dependency of package %s: %sz{relop}{version})rrRcSsg|]}|jdqS))z.fz.f90z.f77)rrr)r^fr4r4r6r`scSsg|]}|jdqS)z.c)rrr)r^rr4r4r6r`scSsg|]}|jdqS))z.cxxz.cppz.ccz.c++)rrr)r^rr4r4r6r`scSsg|]}|jdqS)z /configure)rrr)r^rr4r4r6r`scSsg|]}|jdqS))z /makefilez /makevars)rrr)r^rr4r4r6r`sZRcppZ RcppArmadillo)buildhostrunrz*{indent}{{{{ compiler('c') }}}} {sel})rrz*{indent}{{{{ compiler('cxx') }}}} {sel}z*{indent}{{{{ compiler('fortran') }}}}{sel}z&{indent}rtools {sel}z*{indent}{{{{native}}}}toolchain {sel}z*{indent}{{{{posix}}}}filesystem {sel}z{indent}{{{{posix}}}}git)rz*{indent}{{{{posix}}}}sed {sel}z*{indent}{{{{posix}}}}grep {sel}z*{indent}{{{{posix}}}}autoconf {sel}z*{indent}{{{{posix}}}}automake {sel}z*{indent}{{{{posix}}}}automake-wrapper{sel}z{indent}{{{{posix}}}}pkg-configz*{indent}{{{{posix}}}}make {sel}z*{indent}{{{{posix}}}}coreutils {sel}z*{indent}{{{{posix}}}}zip {sel}rz*{indent}{{{{native}}}}gcc-libs {sel}rz{indent}{r_name})rZr_namez{indent}{name} {version})rrrz{indent}{name})rrz%name %s != inputs_dict['pkg-name'] %sz %s_dependsz=directory already exists (and --update-policy is 'error'): %srJzskip-up-to-datez skip-existingcSs.i|]&\}}tdt|dd|qS)ZNFKDasciiignore) unicodedataZ normalizerencoder)r^rYrZr4r4r6rszskeletonize..zWriting recipe for %sz meta.yamlwzbuild.shcSsg|] }t|qSr4) target_platform_bash_test_by_sel)r^tr4r4r6r`)sz || cSsg|]}d|dqS)z[[ $target_platform z ]]r4)r^rr4r4r6r`*sZsource_pf_bashzbld.batcSsg|]}|dr|qS)r)rc)r^rr4r4r6r`0sr)nrrrTrUrrrr!r rNr"rrSrprrdictrrupdateitemsrapoprtarfile is_tarfilerrrrZfromdictrZ git_sourceZ get_sectionrZ git_cacherrrrrrrrrrZunpackZ src_cacherrRopenrrreadr[rhrorrrNotImplementedErrorrlrcrrintrrsortinsertcopydeepcopyrhashlibsha256r rZdownload_to_cacheZ hexdigestremove SOURCE_META VERSION_META BINARY_METAstrrrget_license_filernsetlistrVERSION_DEPENDENCY_REGEXrraddreanysortedR_BASE_PACKAGE_NAMESr r up_to_daterwrite CRAN_METAallCRAN_BUILD_SH_SOURCECRAN_BUILD_SH_BINARYCRAN_BUILD_SH_MIXEDCRAN_BLD_BAT_SOURCECRAN_BLD_BAT_MIXED)eZ in_packagesrrrrrryrHrIversion_compareZ update_policyZr_interpZuse_binaries_verrFZuse_when_no_binaryZuse_rtools_winrrrZ_variantZ package_dictsrrZcran_layout_templateZ archive_typeZarchive_detailsrzZ inputs_dictr5Z package_dictrrrZ is_github_urlrr|Zdir_pathrZ new_git_tagrrrrZsub_description_pkgZsub_description_namerZdescription_textrWr{Z cran_packagerrrrZnew_maintainerrZ cran_layoutZ availablerZavaliable_artefactrrrZ package_urlZfilename_renderedrZavailable_detailsZhash_msgZ_allrZ binary_idrYrZrrrrZdependsZimportsZlinksZdep_dictseenrrrrrrZneed_gitZtfZneed_fZneed_cZneed_cxxZneed_autotoolsZ need_makeZdep_typeZdepsZ conda_nameZ lower_nameZ from_sourcesZtpbtr4r4r6 skeletonizes                                                                0                                                         r+cCsBt|}|}t|}td||ftd||f||kS)Nz#Local recipe for %s has version %s.z!The version on CRAN for %s is %s.)rrrr r)Z recipe_dirZnewest_conda_versionrZ local_versionrzr4r4r6r)6s  r)r4cCsg}t|}x|D]}|drt|s*q|dd}|rL||ksL||ksLq||krbtd|qtt||||dddtd|||qW|S)Nzr-rzSkipping %s, not found on CRANr,rrz Updating %s)rrcrrr)rrlra)rrr:Z to_updaterecipesrecipe recipe_namer4r4r6 get_outdatedBs      r/cCs^g}t|}xL|D]D}|drt|s*q|dd}|rL||ksL||ksLq||qW|S)Nzr-r)rrcrra)rrr:existingr,r-r.r4r4r6 get_existing[s  r1cCs\|\}}}}|dd}|s dSd|kr,dS||kr8dS|||dddkrXdSdS)NrFz github.comr,rrT)rrl)rrzZ r_pkg_namerrrZ cran_pkg_namer4r4r6r ms  r c Csddddgddgddd gd d d d dgddgddgddddgd}d}x6|D]&}|||krN|j||dd}PqNWd}|S)a Most R packages on CRAN do not include a license file. Instead, to avoid duplication, R base ships with common software licenses: complete: AGPL-3, Artistic-2.0, GPL-2, GPL-3, LGPL-2, LGPL-2.1, LGPL-3 template: BSD_2_clause BSD_3_clause, MIT The complete licenses can be included in conda binaries by pointing to the license file shipped with R base. The template files are more complicated because they would need to be combined with the license information provided by the package authors (e.g. copyright owners and date). This function returns the path to the license file for the unambiguous cases. Any time an R package refers to one of the templates or a custom license file (e.g. 'GPL-2 | file LICENSE'), an empty string is returned. zAGPL-3z AGPL (>= 3)ZAGPLz!GNU Affero General Public Licensez Artistic-2.0zArtistic License 2.0zGPL-2z GPL (>= 2)z!GNU General Public License (>= 2)zGPL-3z GPL (>= 3)z!GNU General Public License (>= 3)ZGPLzGNU General Public LicensezLGPL-2z LGPL (>= 2)zLGPL-2.1z LGPL (>= 2.1)zLGPL-3z LGPL (>= 3)ZLGPLz!GNU Lesser General Public License)Zagpl3Z artistic2Zgpl2Zgpl3Zlgpl2Zlgpl21Zlgpl3zMlicense_file: '{{{{ environ["PREFIX"] }}}}/lib/R/share/licenses/{license_id}'r) license_idr?)keysr)Z license_textZ d_licenseZlicense_file_templater2rr4r4r6rs"  r)T)T)F)r=r?NNNNFTFr?rNFrBFNN)r4)r4)]__doc__Z __future__rrrrLr itertoolsrosrrrr os.pathr r r r rrrrrrrrrTrrurrrjrrrZ conda_buildrrZconda_build.configrZconda_build.conda_interfacerrrrZconda_build.license_familyrrZconda_build.utilsrr Zconda_build.variantsr!r"rrrr"r$r&r%r'r(rZ CRAN_KEYSrZR_RECOMMENDED_PACKAGE_NAMEScompilerrr7rKr[rhrnrrrrrrrrrrrrr+r)r/r1r rr4r4r4r6s 0 C)  ;    S I