## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[BY4742-ATAC-Rep1.2x50mers.sacCer3_updated.noInDels.bowtie.unique.bam] OUTPUT=BY4742-ATAC-Rep1.2x50mers.sacCer3_updated.noInDels.bowtie.unique.dedup.bam METRICS_FILE=BY4742-ATAC-Rep1.2x50mers.sacCer3_updated.noInDels.bowtie.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Mar 11 04:36:41 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	9306759	21701340	0	1969782	1090260	0.211651	35588586

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.116174
2.0	1.975504
3.0	2.637092
4.0	3.146441
5.0	3.538583
6.0	3.840488
7.0	4.072922
8.0	4.25187
9.0	4.38964
10.0	4.495707
11.0	4.577367
12.0	4.640236
13.0	4.688639
14.0	4.725903
15.0	4.754592
16.0	4.77668
17.0	4.793685
18.0	4.806777
19.0	4.816856
20.0	4.824616
21.0	4.830591
22.0	4.83519
23.0	4.838731
24.0	4.841458
25.0	4.843556
26.0	4.845172
27.0	4.846417
28.0	4.847374
29.0	4.848112
30.0	4.848679
31.0	4.849117
32.0	4.849453
33.0	4.849712
34.0	4.849912
35.0	4.850065
36.0	4.850183
37.0	4.850274
38.0	4.850344
39.0	4.850398
40.0	4.85044
41.0	4.850472
42.0	4.850497
43.0	4.850516
44.0	4.85053
45.0	4.850541
46.0	4.85055
47.0	4.850557
48.0	4.850562
49.0	4.850566
50.0	4.850569
51.0	4.850571
52.0	4.850573
53.0	4.850574
54.0	4.850575
55.0	4.850576
56.0	4.850577
57.0	4.850577
58.0	4.850578
59.0	4.850578
60.0	4.850578
61.0	4.850578
62.0	4.850578
63.0	4.850579
64.0	4.850579
65.0	4.850579
66.0	4.850579
67.0	4.850579
68.0	4.850579
69.0	4.850579
70.0	4.850579
71.0	4.850579
72.0	4.850579
73.0	4.850579
74.0	4.850579
75.0	4.850579
76.0	4.850579
77.0	4.850579
78.0	4.850579
79.0	4.850579
80.0	4.850579
81.0	4.850579
82.0	4.850579
83.0	4.850579
84.0	4.850579
85.0	4.850579
86.0	4.850579
87.0	4.850579
88.0	4.850579
89.0	4.850579
90.0	4.850579
91.0	4.850579
92.0	4.850579
93.0	4.850579
94.0	4.850579
95.0	4.850579
96.0	4.850579
97.0	4.850579
98.0	4.850579
99.0	4.850579
100.0	4.850579