## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[hyb_pswi5_rep1-GSM5884483.2x25mers.Spar+sacCer3.bam] OUTPUT=hyb_pswi5_rep1-GSM5884483.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=hyb_pswi5_rep1-GSM5884483.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:54 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 320870 2103054 0 234940 0 0.732197 88257 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 0.999999 2.0 1.026366 3.0 1.027061 4.0 1.02708 5.0 1.02708 6.0 1.02708 7.0 1.02708 8.0 1.02708 9.0 1.02708 10.0 1.02708 11.0 1.02708 12.0 1.02708 13.0 1.02708 14.0 1.02708 15.0 1.02708 16.0 1.02708 17.0 1.02708 18.0 1.02708 19.0 1.02708 20.0 1.02708 21.0 1.02708 22.0 1.02708 23.0 1.02708 24.0 1.02708 25.0 1.02708 26.0 1.02708 27.0 1.02708 28.0 1.02708 29.0 1.02708 30.0 1.02708 31.0 1.02708 32.0 1.02708 33.0 1.02708 34.0 1.02708 35.0 1.02708 36.0 1.02708 37.0 1.02708 38.0 1.02708 39.0 1.02708 40.0 1.02708 41.0 1.02708 42.0 1.02708 43.0 1.02708 44.0 1.02708 45.0 1.02708 46.0 1.02708 47.0 1.02708 48.0 1.02708 49.0 1.02708 50.0 1.02708 51.0 1.02708 52.0 1.02708 53.0 1.02708 54.0 1.02708 55.0 1.02708 56.0 1.02708 57.0 1.02708 58.0 1.02708 59.0 1.02708 60.0 1.02708 61.0 1.02708 62.0 1.02708 63.0 1.02708 64.0 1.02708 65.0 1.02708 66.0 1.02708 67.0 1.02708 68.0 1.02708 69.0 1.02708 70.0 1.02708 71.0 1.02708 72.0 1.02708 73.0 1.02708 74.0 1.02708 75.0 1.02708 76.0 1.02708 77.0 1.02708 78.0 1.02708 79.0 1.02708 80.0 1.02708 81.0 1.02708 82.0 1.02708 83.0 1.02708 84.0 1.02708 85.0 1.02708 86.0 1.02708 87.0 1.02708 88.0 1.02708 89.0 1.02708 90.0 1.02708 91.0 1.02708 92.0 1.02708 93.0 1.02708 94.0 1.02708 95.0 1.02708 96.0 1.02708 97.0 1.02708 98.0 1.02708 99.0 1.02708 100.0 1.02708