## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[TBF1_rep1-GSM5884435.2x25mers.Spar+sacCer3.bam] OUTPUT=TBF1_rep1-GSM5884435.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=TBF1_rep1-GSM5884435.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 8100007 8879950 0 5042677 0 0.622552 3358405 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.089648 3.0 1.097685 4.0 1.098405 5.0 1.09847 6.0 1.098476 7.0 1.098476 8.0 1.098476 9.0 1.098476 10.0 1.098476 11.0 1.098476 12.0 1.098476 13.0 1.098476 14.0 1.098476 15.0 1.098476 16.0 1.098476 17.0 1.098476 18.0 1.098476 19.0 1.098476 20.0 1.098476 21.0 1.098476 22.0 1.098476 23.0 1.098476 24.0 1.098476 25.0 1.098476 26.0 1.098476 27.0 1.098476 28.0 1.098476 29.0 1.098476 30.0 1.098476 31.0 1.098476 32.0 1.098476 33.0 1.098476 34.0 1.098476 35.0 1.098476 36.0 1.098476 37.0 1.098476 38.0 1.098476 39.0 1.098476 40.0 1.098476 41.0 1.098476 42.0 1.098476 43.0 1.098476 44.0 1.098476 45.0 1.098476 46.0 1.098476 47.0 1.098476 48.0 1.098476 49.0 1.098476 50.0 1.098476 51.0 1.098476 52.0 1.098476 53.0 1.098476 54.0 1.098476 55.0 1.098476 56.0 1.098476 57.0 1.098476 58.0 1.098476 59.0 1.098476 60.0 1.098476 61.0 1.098476 62.0 1.098476 63.0 1.098476 64.0 1.098476 65.0 1.098476 66.0 1.098476 67.0 1.098476 68.0 1.098476 69.0 1.098476 70.0 1.098476 71.0 1.098476 72.0 1.098476 73.0 1.098476 74.0 1.098476 75.0 1.098476 76.0 1.098476 77.0 1.098476 78.0 1.098476 79.0 1.098476 80.0 1.098476 81.0 1.098476 82.0 1.098476 83.0 1.098476 84.0 1.098476 85.0 1.098476 86.0 1.098476 87.0 1.098476 88.0 1.098476 89.0 1.098476 90.0 1.098476 91.0 1.098476 92.0 1.098476 93.0 1.098476 94.0 1.098476 95.0 1.098476 96.0 1.098476 97.0 1.098476 98.0 1.098476 99.0 1.098476 100.0 1.098476