## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[SUT1_rep2-GSM5884468.2x25mers.Spar+sacCer3.bam] OUTPUT=SUT1_rep2-GSM5884468.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=SUT1_rep2-GSM5884468.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:56 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 2172835 1438816 0 1352274 0 0.622355 901514 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.089797 3.0 1.09786 4.0 1.098584 5.0 1.098649 6.0 1.098655 7.0 1.098656 8.0 1.098656 9.0 1.098656 10.0 1.098656 11.0 1.098656 12.0 1.098656 13.0 1.098656 14.0 1.098656 15.0 1.098656 16.0 1.098656 17.0 1.098656 18.0 1.098656 19.0 1.098656 20.0 1.098656 21.0 1.098656 22.0 1.098656 23.0 1.098656 24.0 1.098656 25.0 1.098656 26.0 1.098656 27.0 1.098656 28.0 1.098656 29.0 1.098656 30.0 1.098656 31.0 1.098656 32.0 1.098656 33.0 1.098656 34.0 1.098656 35.0 1.098656 36.0 1.098656 37.0 1.098656 38.0 1.098656 39.0 1.098656 40.0 1.098656 41.0 1.098656 42.0 1.098656 43.0 1.098656 44.0 1.098656 45.0 1.098656 46.0 1.098656 47.0 1.098656 48.0 1.098656 49.0 1.098656 50.0 1.098656 51.0 1.098656 52.0 1.098656 53.0 1.098656 54.0 1.098656 55.0 1.098656 56.0 1.098656 57.0 1.098656 58.0 1.098656 59.0 1.098656 60.0 1.098656 61.0 1.098656 62.0 1.098656 63.0 1.098656 64.0 1.098656 65.0 1.098656 66.0 1.098656 67.0 1.098656 68.0 1.098656 69.0 1.098656 70.0 1.098656 71.0 1.098656 72.0 1.098656 73.0 1.098656 74.0 1.098656 75.0 1.098656 76.0 1.098656 77.0 1.098656 78.0 1.098656 79.0 1.098656 80.0 1.098656 81.0 1.098656 82.0 1.098656 83.0 1.098656 84.0 1.098656 85.0 1.098656 86.0 1.098656 87.0 1.098656 88.0 1.098656 89.0 1.098656 90.0 1.098656 91.0 1.098656 92.0 1.098656 93.0 1.098656 94.0 1.098656 95.0 1.098656 96.0 1.098656 97.0 1.098656 98.0 1.098656 99.0 1.098656 100.0 1.098656