## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[STB3_rep2-GSM5884438.2x25mers.Spar+sacCer3.bam] OUTPUT=STB3_rep2-GSM5884438.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=STB3_rep2-GSM5884438.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 3319752 2931442 0 2192759 0 0.660519 1203218 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.063351 3.0 1.067364 4.0 1.067619 5.0 1.067635 6.0 1.067636 7.0 1.067636 8.0 1.067636 9.0 1.067636 10.0 1.067636 11.0 1.067636 12.0 1.067636 13.0 1.067636 14.0 1.067636 15.0 1.067636 16.0 1.067636 17.0 1.067636 18.0 1.067636 19.0 1.067636 20.0 1.067636 21.0 1.067636 22.0 1.067636 23.0 1.067636 24.0 1.067636 25.0 1.067636 26.0 1.067636 27.0 1.067636 28.0 1.067636 29.0 1.067636 30.0 1.067636 31.0 1.067636 32.0 1.067636 33.0 1.067636 34.0 1.067636 35.0 1.067636 36.0 1.067636 37.0 1.067636 38.0 1.067636 39.0 1.067636 40.0 1.067636 41.0 1.067636 42.0 1.067636 43.0 1.067636 44.0 1.067636 45.0 1.067636 46.0 1.067636 47.0 1.067636 48.0 1.067636 49.0 1.067636 50.0 1.067636 51.0 1.067636 52.0 1.067636 53.0 1.067636 54.0 1.067636 55.0 1.067636 56.0 1.067636 57.0 1.067636 58.0 1.067636 59.0 1.067636 60.0 1.067636 61.0 1.067636 62.0 1.067636 63.0 1.067636 64.0 1.067636 65.0 1.067636 66.0 1.067636 67.0 1.067636 68.0 1.067636 69.0 1.067636 70.0 1.067636 71.0 1.067636 72.0 1.067636 73.0 1.067636 74.0 1.067636 75.0 1.067636 76.0 1.067636 77.0 1.067636 78.0 1.067636 79.0 1.067636 80.0 1.067636 81.0 1.067636 82.0 1.067636 83.0 1.067636 84.0 1.067636 85.0 1.067636 86.0 1.067636 87.0 1.067636 88.0 1.067636 89.0 1.067636 90.0 1.067636 91.0 1.067636 92.0 1.067636 93.0 1.067636 94.0 1.067636 95.0 1.067636 96.0 1.067636 97.0 1.067636 98.0 1.067636 99.0 1.067636 100.0 1.067636