## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[SOK2_rep2-GSM5884454.2x25mers.Spar+sacCer3.bam] OUTPUT=SOK2_rep2-GSM5884454.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=SOK2_rep2-GSM5884454.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:21 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 846534 10345840 0 255132 0 0.301384 1105188 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.464886 3.0 1.681004 4.0 1.781475 5.0 1.828182 6.0 1.849895 7.0 1.85999 8.0 1.864682 9.0 1.866864 10.0 1.867878 11.0 1.86835 12.0 1.868569 13.0 1.868671 14.0 1.868718 15.0 1.86874 16.0 1.86875 17.0 1.868755 18.0 1.868757 19.0 1.868758 20.0 1.868759 21.0 1.868759 22.0 1.868759 23.0 1.868759 24.0 1.868759 25.0 1.868759 26.0 1.868759 27.0 1.868759 28.0 1.868759 29.0 1.868759 30.0 1.868759 31.0 1.868759 32.0 1.868759 33.0 1.868759 34.0 1.868759 35.0 1.868759 36.0 1.868759 37.0 1.868759 38.0 1.868759 39.0 1.868759 40.0 1.868759 41.0 1.868759 42.0 1.868759 43.0 1.868759 44.0 1.868759 45.0 1.868759 46.0 1.868759 47.0 1.868759 48.0 1.868759 49.0 1.868759 50.0 1.868759 51.0 1.868759 52.0 1.868759 53.0 1.868759 54.0 1.868759 55.0 1.868759 56.0 1.868759 57.0 1.868759 58.0 1.868759 59.0 1.868759 60.0 1.868759 61.0 1.868759 62.0 1.868759 63.0 1.868759 64.0 1.868759 65.0 1.868759 66.0 1.868759 67.0 1.868759 68.0 1.868759 69.0 1.868759 70.0 1.868759 71.0 1.868759 72.0 1.868759 73.0 1.868759 74.0 1.868759 75.0 1.868759 76.0 1.868759 77.0 1.868759 78.0 1.868759 79.0 1.868759 80.0 1.868759 81.0 1.868759 82.0 1.868759 83.0 1.868759 84.0 1.868759 85.0 1.868759 86.0 1.868759 87.0 1.868759 88.0 1.868759 89.0 1.868759 90.0 1.868759 91.0 1.868759 92.0 1.868759 93.0 1.868759 94.0 1.868759 95.0 1.868759 96.0 1.868759 97.0 1.868759 98.0 1.868759 99.0 1.868759 100.0 1.868759