## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[SOK2_rep1-GSM5884453.2x25mers.Spar+sacCer3.bam] OUTPUT=SOK2_rep1-GSM5884453.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=SOK2_rep1-GSM5884453.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 1170375 6352600 0 373767 0 0.319357 1416978 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.437812 3.0 1.629491 4.0 1.713411 5.0 1.750152 6.0 1.766238 7.0 1.77328 8.0 1.776363 9.0 1.777713 10.0 1.778304 11.0 1.778563 12.0 1.778676 13.0 1.778726 14.0 1.778748 15.0 1.778757 16.0 1.778761 17.0 1.778763 18.0 1.778764 19.0 1.778764 20.0 1.778764 21.0 1.778764 22.0 1.778764 23.0 1.778764 24.0 1.778764 25.0 1.778764 26.0 1.778764 27.0 1.778764 28.0 1.778764 29.0 1.778764 30.0 1.778764 31.0 1.778764 32.0 1.778764 33.0 1.778764 34.0 1.778764 35.0 1.778764 36.0 1.778764 37.0 1.778764 38.0 1.778764 39.0 1.778764 40.0 1.778764 41.0 1.778764 42.0 1.778764 43.0 1.778764 44.0 1.778764 45.0 1.778764 46.0 1.778764 47.0 1.778764 48.0 1.778764 49.0 1.778764 50.0 1.778764 51.0 1.778764 52.0 1.778764 53.0 1.778764 54.0 1.778764 55.0 1.778764 56.0 1.778764 57.0 1.778764 58.0 1.778764 59.0 1.778764 60.0 1.778764 61.0 1.778764 62.0 1.778764 63.0 1.778764 64.0 1.778764 65.0 1.778764 66.0 1.778764 67.0 1.778764 68.0 1.778764 69.0 1.778764 70.0 1.778764 71.0 1.778764 72.0 1.778764 73.0 1.778764 74.0 1.778764 75.0 1.778764 76.0 1.778764 77.0 1.778764 78.0 1.778764 79.0 1.778764 80.0 1.778764 81.0 1.778764 82.0 1.778764 83.0 1.778764 84.0 1.778764 85.0 1.778764 86.0 1.778764 87.0 1.778764 88.0 1.778764 89.0 1.778764 90.0 1.778764 91.0 1.778764 92.0 1.778764 93.0 1.778764 94.0 1.778764 95.0 1.778764 96.0 1.778764 97.0 1.778764 98.0 1.778764 99.0 1.778764 100.0 1.778764