## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[SKN7_rep2-GSM5884450.2x25mers.Spar+sacCer3.bam] OUTPUT=SKN7_rep2-GSM5884450.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=SKN7_rep2-GSM5884450.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 3579756 5022258 0 1460947 0 0.408114 3086708 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.31357 3.0 1.411896 4.0 1.442728 5.0 1.452396 6.0 1.455428 7.0 1.456379 8.0 1.456677 9.0 1.45677 10.0 1.456799 11.0 1.456809 12.0 1.456811 13.0 1.456812 14.0 1.456813 15.0 1.456813 16.0 1.456813 17.0 1.456813 18.0 1.456813 19.0 1.456813 20.0 1.456813 21.0 1.456813 22.0 1.456813 23.0 1.456813 24.0 1.456813 25.0 1.456813 26.0 1.456813 27.0 1.456813 28.0 1.456813 29.0 1.456813 30.0 1.456813 31.0 1.456813 32.0 1.456813 33.0 1.456813 34.0 1.456813 35.0 1.456813 36.0 1.456813 37.0 1.456813 38.0 1.456813 39.0 1.456813 40.0 1.456813 41.0 1.456813 42.0 1.456813 43.0 1.456813 44.0 1.456813 45.0 1.456813 46.0 1.456813 47.0 1.456813 48.0 1.456813 49.0 1.456813 50.0 1.456813 51.0 1.456813 52.0 1.456813 53.0 1.456813 54.0 1.456813 55.0 1.456813 56.0 1.456813 57.0 1.456813 58.0 1.456813 59.0 1.456813 60.0 1.456813 61.0 1.456813 62.0 1.456813 63.0 1.456813 64.0 1.456813 65.0 1.456813 66.0 1.456813 67.0 1.456813 68.0 1.456813 69.0 1.456813 70.0 1.456813 71.0 1.456813 72.0 1.456813 73.0 1.456813 74.0 1.456813 75.0 1.456813 76.0 1.456813 77.0 1.456813 78.0 1.456813 79.0 1.456813 80.0 1.456813 81.0 1.456813 82.0 1.456813 83.0 1.456813 84.0 1.456813 85.0 1.456813 86.0 1.456813 87.0 1.456813 88.0 1.456813 89.0 1.456813 90.0 1.456813 91.0 1.456813 92.0 1.456813 93.0 1.456813 94.0 1.456813 95.0 1.456813 96.0 1.456813 97.0 1.456813 98.0 1.456813 99.0 1.456813 100.0 1.456813