## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[SKN7_rep1-GSM5884449.2x25mers.Spar+sacCer3.bam] OUTPUT=SKN7_rep1-GSM5884449.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=SKN7_rep1-GSM5884449.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 1480866 3236898 0 1164084 0 0.786083 319905 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 0.999999 2.0 1.009762 3.0 1.009858 4.0 1.009859 5.0 1.009859 6.0 1.009859 7.0 1.009859 8.0 1.009859 9.0 1.009859 10.0 1.009859 11.0 1.009859 12.0 1.009859 13.0 1.009859 14.0 1.009859 15.0 1.009859 16.0 1.009859 17.0 1.009859 18.0 1.009859 19.0 1.009859 20.0 1.009859 21.0 1.009859 22.0 1.009859 23.0 1.009859 24.0 1.009859 25.0 1.009859 26.0 1.009859 27.0 1.009859 28.0 1.009859 29.0 1.009859 30.0 1.009859 31.0 1.009859 32.0 1.009859 33.0 1.009859 34.0 1.009859 35.0 1.009859 36.0 1.009859 37.0 1.009859 38.0 1.009859 39.0 1.009859 40.0 1.009859 41.0 1.009859 42.0 1.009859 43.0 1.009859 44.0 1.009859 45.0 1.009859 46.0 1.009859 47.0 1.009859 48.0 1.009859 49.0 1.009859 50.0 1.009859 51.0 1.009859 52.0 1.009859 53.0 1.009859 54.0 1.009859 55.0 1.009859 56.0 1.009859 57.0 1.009859 58.0 1.009859 59.0 1.009859 60.0 1.009859 61.0 1.009859 62.0 1.009859 63.0 1.009859 64.0 1.009859 65.0 1.009859 66.0 1.009859 67.0 1.009859 68.0 1.009859 69.0 1.009859 70.0 1.009859 71.0 1.009859 72.0 1.009859 73.0 1.009859 74.0 1.009859 75.0 1.009859 76.0 1.009859 77.0 1.009859 78.0 1.009859 79.0 1.009859 80.0 1.009859 81.0 1.009859 82.0 1.009859 83.0 1.009859 84.0 1.009859 85.0 1.009859 86.0 1.009859 87.0 1.009859 88.0 1.009859 89.0 1.009859 90.0 1.009859 91.0 1.009859 92.0 1.009859 93.0 1.009859 94.0 1.009859 95.0 1.009859 96.0 1.009859 97.0 1.009859 98.0 1.009859 99.0 1.009859 100.0 1.009859