## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[PHO4_rep1-GSM5884439.2x25mers.Spar+sacCer3.bam] OUTPUT=PHO4_rep1-GSM5884439.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=PHO4_rep1-GSM5884439.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 418026 11494012 0 208400 0 0.498534 263610 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 0.999998 2.0 1.204786 3.0 1.246725 4.0 1.255314 5.0 1.257072 6.0 1.257433 7.0 1.257506 8.0 1.257521 9.0 1.257525 10.0 1.257525 11.0 1.257525 12.0 1.257525 13.0 1.257525 14.0 1.257525 15.0 1.257525 16.0 1.257525 17.0 1.257525 18.0 1.257525 19.0 1.257525 20.0 1.257525 21.0 1.257525 22.0 1.257525 23.0 1.257525 24.0 1.257525 25.0 1.257525 26.0 1.257525 27.0 1.257525 28.0 1.257525 29.0 1.257525 30.0 1.257525 31.0 1.257525 32.0 1.257525 33.0 1.257525 34.0 1.257525 35.0 1.257525 36.0 1.257525 37.0 1.257525 38.0 1.257525 39.0 1.257525 40.0 1.257525 41.0 1.257525 42.0 1.257525 43.0 1.257525 44.0 1.257525 45.0 1.257525 46.0 1.257525 47.0 1.257525 48.0 1.257525 49.0 1.257525 50.0 1.257525 51.0 1.257525 52.0 1.257525 53.0 1.257525 54.0 1.257525 55.0 1.257525 56.0 1.257525 57.0 1.257525 58.0 1.257525 59.0 1.257525 60.0 1.257525 61.0 1.257525 62.0 1.257525 63.0 1.257525 64.0 1.257525 65.0 1.257525 66.0 1.257525 67.0 1.257525 68.0 1.257525 69.0 1.257525 70.0 1.257525 71.0 1.257525 72.0 1.257525 73.0 1.257525 74.0 1.257525 75.0 1.257525 76.0 1.257525 77.0 1.257525 78.0 1.257525 79.0 1.257525 80.0 1.257525 81.0 1.257525 82.0 1.257525 83.0 1.257525 84.0 1.257525 85.0 1.257525 86.0 1.257525 87.0 1.257525 88.0 1.257525 89.0 1.257525 90.0 1.257525 91.0 1.257525 92.0 1.257525 93.0 1.257525 94.0 1.257525 95.0 1.257525 96.0 1.257525 97.0 1.257525 98.0 1.257525 99.0 1.257525 100.0 1.257525