## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[PHD1_rep1-GSM5884451.2x25mers.Spar+sacCer3.bam] OUTPUT=PHD1_rep1-GSM5884451.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=PHD1_rep1-GSM5884451.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 4561957 3957030 0 3066752 0 0.672245 1584153 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.056149 3.0 1.059301 4.0 1.059478 5.0 1.059488 6.0 1.059489 7.0 1.059489 8.0 1.059489 9.0 1.059489 10.0 1.059489 11.0 1.059489 12.0 1.059489 13.0 1.059489 14.0 1.059489 15.0 1.059489 16.0 1.059489 17.0 1.059489 18.0 1.059489 19.0 1.059489 20.0 1.059489 21.0 1.059489 22.0 1.059489 23.0 1.059489 24.0 1.059489 25.0 1.059489 26.0 1.059489 27.0 1.059489 28.0 1.059489 29.0 1.059489 30.0 1.059489 31.0 1.059489 32.0 1.059489 33.0 1.059489 34.0 1.059489 35.0 1.059489 36.0 1.059489 37.0 1.059489 38.0 1.059489 39.0 1.059489 40.0 1.059489 41.0 1.059489 42.0 1.059489 43.0 1.059489 44.0 1.059489 45.0 1.059489 46.0 1.059489 47.0 1.059489 48.0 1.059489 49.0 1.059489 50.0 1.059489 51.0 1.059489 52.0 1.059489 53.0 1.059489 54.0 1.059489 55.0 1.059489 56.0 1.059489 57.0 1.059489 58.0 1.059489 59.0 1.059489 60.0 1.059489 61.0 1.059489 62.0 1.059489 63.0 1.059489 64.0 1.059489 65.0 1.059489 66.0 1.059489 67.0 1.059489 68.0 1.059489 69.0 1.059489 70.0 1.059489 71.0 1.059489 72.0 1.059489 73.0 1.059489 74.0 1.059489 75.0 1.059489 76.0 1.059489 77.0 1.059489 78.0 1.059489 79.0 1.059489 80.0 1.059489 81.0 1.059489 82.0 1.059489 83.0 1.059489 84.0 1.059489 85.0 1.059489 86.0 1.059489 87.0 1.059489 88.0 1.059489 89.0 1.059489 90.0 1.059489 91.0 1.059489 92.0 1.059489 93.0 1.059489 94.0 1.059489 95.0 1.059489 96.0 1.059489 97.0 1.059489 98.0 1.059489 99.0 1.059489 100.0 1.059489