## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[MSN2_rep6-GSM5884460.2x25mers.Spar+sacCer3.bam] OUTPUT=MSN2_rep6-GSM5884460.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=MSN2_rep6-GSM5884460.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 2981532 1491426 0 1902275 0 0.638019 1171061 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.078394 3.0 1.084539 4.0 1.085021 5.0 1.085059 6.0 1.085062 7.0 1.085062 8.0 1.085062 9.0 1.085062 10.0 1.085062 11.0 1.085062 12.0 1.085062 13.0 1.085062 14.0 1.085062 15.0 1.085062 16.0 1.085062 17.0 1.085062 18.0 1.085062 19.0 1.085062 20.0 1.085062 21.0 1.085062 22.0 1.085062 23.0 1.085062 24.0 1.085062 25.0 1.085062 26.0 1.085062 27.0 1.085062 28.0 1.085062 29.0 1.085062 30.0 1.085062 31.0 1.085062 32.0 1.085062 33.0 1.085062 34.0 1.085062 35.0 1.085062 36.0 1.085062 37.0 1.085062 38.0 1.085062 39.0 1.085062 40.0 1.085062 41.0 1.085062 42.0 1.085062 43.0 1.085062 44.0 1.085062 45.0 1.085062 46.0 1.085062 47.0 1.085062 48.0 1.085062 49.0 1.085062 50.0 1.085062 51.0 1.085062 52.0 1.085062 53.0 1.085062 54.0 1.085062 55.0 1.085062 56.0 1.085062 57.0 1.085062 58.0 1.085062 59.0 1.085062 60.0 1.085062 61.0 1.085062 62.0 1.085062 63.0 1.085062 64.0 1.085062 65.0 1.085062 66.0 1.085062 67.0 1.085062 68.0 1.085062 69.0 1.085062 70.0 1.085062 71.0 1.085062 72.0 1.085062 73.0 1.085062 74.0 1.085062 75.0 1.085062 76.0 1.085062 77.0 1.085062 78.0 1.085062 79.0 1.085062 80.0 1.085062 81.0 1.085062 82.0 1.085062 83.0 1.085062 84.0 1.085062 85.0 1.085062 86.0 1.085062 87.0 1.085062 88.0 1.085062 89.0 1.085062 90.0 1.085062 91.0 1.085062 92.0 1.085062 93.0 1.085062 94.0 1.085062 95.0 1.085062 96.0 1.085062 97.0 1.085062 98.0 1.085062 99.0 1.085062 100.0 1.085062