## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[MSN2_rep5-GSM5884459.2x25mers.Spar+sacCer3.bam] OUTPUT=MSN2_rep5-GSM5884459.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=MSN2_rep5-GSM5884459.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 7837436 4328252 0 4233896 0 0.540214 4297059 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.161394 3.0 1.187442 4.0 1.191646 5.0 1.192324 6.0 1.192434 7.0 1.192452 8.0 1.192454 9.0 1.192455 10.0 1.192455 11.0 1.192455 12.0 1.192455 13.0 1.192455 14.0 1.192455 15.0 1.192455 16.0 1.192455 17.0 1.192455 18.0 1.192455 19.0 1.192455 20.0 1.192455 21.0 1.192455 22.0 1.192455 23.0 1.192455 24.0 1.192455 25.0 1.192455 26.0 1.192455 27.0 1.192455 28.0 1.192455 29.0 1.192455 30.0 1.192455 31.0 1.192455 32.0 1.192455 33.0 1.192455 34.0 1.192455 35.0 1.192455 36.0 1.192455 37.0 1.192455 38.0 1.192455 39.0 1.192455 40.0 1.192455 41.0 1.192455 42.0 1.192455 43.0 1.192455 44.0 1.192455 45.0 1.192455 46.0 1.192455 47.0 1.192455 48.0 1.192455 49.0 1.192455 50.0 1.192455 51.0 1.192455 52.0 1.192455 53.0 1.192455 54.0 1.192455 55.0 1.192455 56.0 1.192455 57.0 1.192455 58.0 1.192455 59.0 1.192455 60.0 1.192455 61.0 1.192455 62.0 1.192455 63.0 1.192455 64.0 1.192455 65.0 1.192455 66.0 1.192455 67.0 1.192455 68.0 1.192455 69.0 1.192455 70.0 1.192455 71.0 1.192455 72.0 1.192455 73.0 1.192455 74.0 1.192455 75.0 1.192455 76.0 1.192455 77.0 1.192455 78.0 1.192455 79.0 1.192455 80.0 1.192455 81.0 1.192455 82.0 1.192455 83.0 1.192455 84.0 1.192455 85.0 1.192455 86.0 1.192455 87.0 1.192455 88.0 1.192455 89.0 1.192455 90.0 1.192455 91.0 1.192455 92.0 1.192455 93.0 1.192455 94.0 1.192455 95.0 1.192455 96.0 1.192455 97.0 1.192455 98.0 1.192455 99.0 1.192455 100.0 1.192455