## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[MIG1_rep2-GSM5884464.2x25mers.Spar+sacCer3.bam] OUTPUT=MIG1_rep2-GSM5884464.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=MIG1_rep2-GSM5884464.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:44 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 1337816 5701026 0 688155 0 0.514387 799833 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 0.999999 2.0 1.187754 3.0 1.223006 4.0 1.229624 5.0 1.230867 6.0 1.2311 7.0 1.231144 8.0 1.231153 9.0 1.231154 10.0 1.231154 11.0 1.231154 12.0 1.231154 13.0 1.231154 14.0 1.231154 15.0 1.231154 16.0 1.231154 17.0 1.231154 18.0 1.231154 19.0 1.231154 20.0 1.231154 21.0 1.231154 22.0 1.231154 23.0 1.231154 24.0 1.231154 25.0 1.231154 26.0 1.231154 27.0 1.231154 28.0 1.231154 29.0 1.231154 30.0 1.231154 31.0 1.231154 32.0 1.231154 33.0 1.231154 34.0 1.231154 35.0 1.231154 36.0 1.231154 37.0 1.231154 38.0 1.231154 39.0 1.231154 40.0 1.231154 41.0 1.231154 42.0 1.231154 43.0 1.231154 44.0 1.231154 45.0 1.231154 46.0 1.231154 47.0 1.231154 48.0 1.231154 49.0 1.231154 50.0 1.231154 51.0 1.231154 52.0 1.231154 53.0 1.231154 54.0 1.231154 55.0 1.231154 56.0 1.231154 57.0 1.231154 58.0 1.231154 59.0 1.231154 60.0 1.231154 61.0 1.231154 62.0 1.231154 63.0 1.231154 64.0 1.231154 65.0 1.231154 66.0 1.231154 67.0 1.231154 68.0 1.231154 69.0 1.231154 70.0 1.231154 71.0 1.231154 72.0 1.231154 73.0 1.231154 74.0 1.231154 75.0 1.231154 76.0 1.231154 77.0 1.231154 78.0 1.231154 79.0 1.231154 80.0 1.231154 81.0 1.231154 82.0 1.231154 83.0 1.231154 84.0 1.231154 85.0 1.231154 86.0 1.231154 87.0 1.231154 88.0 1.231154 89.0 1.231154 90.0 1.231154 91.0 1.231154 92.0 1.231154 93.0 1.231154 94.0 1.231154 95.0 1.231154 96.0 1.231154 97.0 1.231154 98.0 1.231154 99.0 1.231154 100.0 1.231154