## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[GCR2_rep1-GSM5884461.2x25mers.Spar+sacCer3.bam] OUTPUT=GCR2_rep1-GSM5884461.2x25mers.Spar+sacCer3.unique.dedup.bam METRICS_FILE=GCR2_rep1-GSM5884461.2x25mers.Spar+sacCer3.unique.dedup.metric PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates REMOVE_DUPLICATES=false ASSUME_SORTED=false MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Jun 01 22:37:22 PDT 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 568432 9288324 0 243560 0 0.428477 455910 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1 2.0 1.287421 3.0 1.370031 4.0 1.393775 5.0 1.4006 6.0 1.402562 7.0 1.403125 8.0 1.403287 9.0 1.403334 10.0 1.403347 11.0 1.403351 12.0 1.403352 13.0 1.403353 14.0 1.403353 15.0 1.403353 16.0 1.403353 17.0 1.403353 18.0 1.403353 19.0 1.403353 20.0 1.403353 21.0 1.403353 22.0 1.403353 23.0 1.403353 24.0 1.403353 25.0 1.403353 26.0 1.403353 27.0 1.403353 28.0 1.403353 29.0 1.403353 30.0 1.403353 31.0 1.403353 32.0 1.403353 33.0 1.403353 34.0 1.403353 35.0 1.403353 36.0 1.403353 37.0 1.403353 38.0 1.403353 39.0 1.403353 40.0 1.403353 41.0 1.403353 42.0 1.403353 43.0 1.403353 44.0 1.403353 45.0 1.403353 46.0 1.403353 47.0 1.403353 48.0 1.403353 49.0 1.403353 50.0 1.403353 51.0 1.403353 52.0 1.403353 53.0 1.403353 54.0 1.403353 55.0 1.403353 56.0 1.403353 57.0 1.403353 58.0 1.403353 59.0 1.403353 60.0 1.403353 61.0 1.403353 62.0 1.403353 63.0 1.403353 64.0 1.403353 65.0 1.403353 66.0 1.403353 67.0 1.403353 68.0 1.403353 69.0 1.403353 70.0 1.403353 71.0 1.403353 72.0 1.403353 73.0 1.403353 74.0 1.403353 75.0 1.403353 76.0 1.403353 77.0 1.403353 78.0 1.403353 79.0 1.403353 80.0 1.403353 81.0 1.403353 82.0 1.403353 83.0 1.403353 84.0 1.403353 85.0 1.403353 86.0 1.403353 87.0 1.403353 88.0 1.403353 89.0 1.403353 90.0 1.403353 91.0 1.403353 92.0 1.403353 93.0 1.403353 94.0 1.403353 95.0 1.403353 96.0 1.403353 97.0 1.403353 98.0 1.403353 99.0 1.403353 100.0 1.403353