## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[human_cutandrun-CR_CD34-GATA1_WT_Day6-rep1_R1.2x25mers.hg38.unique.bam] OUTPUT=human_cutandrun-CR_CD34-GATA1_WT_Day6-rep1_R1.2x25mers.hg38.unique.dedup.bam METRICS_FILE=human_cutandrun-CR_CD34-GATA1_WT_Day6-rep1_R1.2x25mers.hg38.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jul 17 23:57:48 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	38962619	18475172	0	7659932	7190015	0.196597	1063506934

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.222181
2.0	2.400396
3.0	3.536227
4.0	4.631199
5.0	5.686782
6.0	6.704392
7.0	7.685395
8.0	8.631109
9.0	9.542803
10.0	10.4217
11.0	11.268981
12.0	12.085783
13.0	12.873201
14.0	13.632294
15.0	14.36408
16.0	15.069542
17.0	15.749626
18.0	16.405245
19.0	17.03728
20.0	17.646578
21.0	18.233959
22.0	18.800209
23.0	19.34609
24.0	19.872333
25.0	20.379647
26.0	20.86871
27.0	21.340181
28.0	21.794691
29.0	22.232851
30.0	22.655249
31.0	23.062453
32.0	23.455008
33.0	23.833441
34.0	24.198261
35.0	24.549958
36.0	24.889003
37.0	25.215851
38.0	25.530942
39.0	25.834698
40.0	26.127527
41.0	26.409822
42.0	26.681962
43.0	26.944312
44.0	27.197225
45.0	27.44104
46.0	27.676084
47.0	27.902673
48.0	28.121111
49.0	28.33169
50.0	28.534695
51.0	28.730397
52.0	28.919059
53.0	29.100934
54.0	29.276267
55.0	29.445292
56.0	29.608237
57.0	29.765321
58.0	29.916754
59.0	30.062739
60.0	30.203472
61.0	30.339143
62.0	30.469934
63.0	30.59602
64.0	30.71757
65.0	30.834747
66.0	30.947709
67.0	31.056608
68.0	31.161589
69.0	31.262794
70.0	31.360358
71.0	31.454412
72.0	31.545083
73.0	31.632492
74.0	31.716757
75.0	31.797991
76.0	31.876302
77.0	31.951797
78.0	32.024575
79.0	32.094736
80.0	32.162372
81.0	32.227576
82.0	32.290434
83.0	32.351031
84.0	32.409448
85.0	32.465763
86.0	32.520053
87.0	32.572389
88.0	32.622843
89.0	32.671482
90.0	32.718372
91.0	32.763574
92.0	32.807151
93.0	32.84916
94.0	32.889657
95.0	32.928698
96.0	32.966335
97.0	33.002617
98.0	33.037595
99.0	33.071314
100.0	33.10382