## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep2_R1.2x25mers.hg38.unique.bam] OUTPUT=human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep2_R1.2x25mers.hg38.unique.dedup.bam METRICS_FILE=human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep2_R1.2x25mers.hg38.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jul 17 23:57:17 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	33346973	21452948	0	6458723	5997428	0.193682	801616045

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.214764
2.0	2.380031
3.0	3.497818
4.0	4.570059
5.0	5.59861
6.0	6.585251
7.0	7.531691
8.0	8.439566
9.0	9.310449
10.0	10.145847
11.0	10.947206
12.0	11.715912
13.0	12.453296
14.0	13.160634
15.0	13.839151
16.0	14.490021
17.0	15.114371
18.0	15.71328
19.0	16.287787
20.0	16.838884
21.0	17.367526
22.0	17.874628
23.0	18.361067
24.0	18.827686
25.0	19.275291
26.0	19.704659
27.0	20.116531
28.0	20.511621
29.0	20.890613
30.0	21.254162
31.0	21.602898
32.0	21.937424
33.0	22.258319
34.0	22.566139
35.0	22.861417
36.0	23.144663
37.0	23.416368
38.0	23.677002
39.0	23.927016
40.0	24.166843
41.0	24.396898
42.0	24.617579
43.0	24.829268
44.0	25.032331
45.0	25.227121
46.0	25.413973
47.0	25.593212
48.0	25.765148
49.0	25.930078
50.0	26.088287
51.0	26.240051
52.0	26.38563
53.0	26.525277
54.0	26.659235
55.0	26.787734
56.0	26.910997
57.0	27.029238
58.0	27.142661
59.0	27.251462
60.0	27.35583
61.0	27.455946
62.0	27.551982
63.0	27.644105
64.0	27.732474
65.0	27.817243
66.0	27.898558
67.0	27.976559
68.0	28.051382
69.0	28.123156
70.0	28.192006
71.0	28.25805
72.0	28.321404
73.0	28.382176
74.0	28.440471
75.0	28.496392
76.0	28.550034
77.0	28.60149
78.0	28.650849
79.0	28.698197
80.0	28.743616
81.0	28.787185
82.0	28.828978
83.0	28.869068
84.0	28.907525
85.0	28.944414
86.0	28.979801
87.0	29.013746
88.0	29.046307
89.0	29.077542
90.0	29.107504
91.0	29.136245
92.0	29.163816
93.0	29.190262
94.0	29.215631
95.0	29.239967
96.0	29.263311
97.0	29.285704
98.0	29.307184
99.0	29.327789
100.0	29.347554