## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep1_R1.2x25mers.hg38.unique.bam] OUTPUT=human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep1_R1.2x25mers.hg38.unique.dedup.bam METRICS_FILE=human_cutandrun-CR_CD34-GATA1_Patient_Day6-rep1_R1.2x25mers.hg38.unique.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jul 17 23:57:17 PDT 2020

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	35385478	21258740	0	8011369	7217156	0.226403	490088157

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.247099
2.0	2.407328
3.0	3.486739
4.0	4.490961
5.0	5.425232
6.0	6.294424
7.0	7.10307
8.0	7.855388
9.0	8.555302
10.0	9.206461
11.0	9.812263
12.0	10.375866
13.0	10.90021
14.0	11.38803
15.0	11.841869
16.0	12.264095
17.0	12.65691
18.0	13.022363
19.0	13.362359
20.0	13.678672
21.0	13.972951
22.0	14.246732
23.0	14.501442
24.0	14.738409
25.0	14.95887
26.0	15.163975
27.0	15.354792
28.0	15.532317
29.0	15.697477
30.0	15.851132
31.0	15.994084
32.0	16.127078
33.0	16.250808
34.0	16.365919
35.0	16.473012
36.0	16.572645
37.0	16.665338
38.0	16.751575
39.0	16.831804
40.0	16.906445
41.0	16.975886
42.0	17.040491
43.0	17.100595
44.0	17.156512
45.0	17.208535
46.0	17.256934
47.0	17.301961
48.0	17.343852
49.0	17.382825
50.0	17.419083
51.0	17.452815
52.0	17.484198
53.0	17.513395
54.0	17.540558
55.0	17.565829
56.0	17.589339
57.0	17.611212
58.0	17.631561
59.0	17.650493
60.0	17.668106
61.0	17.684493
62.0	17.699737
63.0	17.71392
64.0	17.727115
65.0	17.739391
66.0	17.750812
67.0	17.761437
68.0	17.771322
69.0	17.780518
70.0	17.789074
71.0	17.797034
72.0	17.80444
73.0	17.811329
74.0	17.817739
75.0	17.823702
76.0	17.82925
77.0	17.834411
78.0	17.839213
79.0	17.84368
80.0	17.847837
81.0	17.851703
82.0	17.855301
83.0	17.858647
84.0	17.861761
85.0	17.864658
86.0	17.867353
87.0	17.86986
88.0	17.872192
89.0	17.874363
90.0	17.876381
91.0	17.87826
92.0	17.880007
93.0	17.881633
94.0	17.883145
95.0	17.884553
96.0	17.885862
97.0	17.88708
98.0	17.888213
99.0	17.889267
100.0	17.890248