chr10:  UMI count=231252 |  num t-points before testing:  220  num significant t-points:  186 , num t-points after removing overlap:  168
chr11:  UMI count=259459 |  num t-points before testing:  332  num significant t-points:  300 , num t-points after removing overlap:  282
chr12:  UMI count=295634 |  num t-points before testing:  269  num significant t-points:  243 , num t-points after removing overlap:  218
chr13:  UMI count=228532 |  num t-points before testing:  202  num significant t-points:  180 , num t-points after removing overlap:  168
chr14:  UMI count=247415 |  num t-points before testing:  218  num significant t-points:  196 , num t-points after removing overlap:  173
chr15:  UMI count=192288 |  num t-points before testing:  181  num significant t-points:  152 , num t-points after removing overlap:  139
chr16:  UMI count=190384 |  num t-points before testing:  189  num significant t-points:  166 , num t-points after removing overlap:  151
chr17:  UMI count=176074 |  num t-points before testing:  202  num significant t-points:  177 , num t-points after removing overlap:  154
chr18:  UMI count=174066 |  num t-points before testing:  160  num significant t-points:  141 , num t-points after removing overlap:  126
chr19:  UMI count=123272 |  num t-points before testing:  145  num significant t-points:  136 , num t-points after removing overlap:  120
chr1:  UMI count=503631 |  num t-points before testing:  443  num significant t-points:  382 , num t-points after removing overlap:  331
chr1_GL456210_random:  UMI count=49 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456211_random:  UMI count=133 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456212_random:  UMI count=32 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456221_random:  UMI count=67 |  num t-points before testing:  0  num significant t-points:  0 chr2:  UMI count=412407 |  num t-points before testing:  360  num significant t-points:  322 , num t-points after removing overlap:  284
chr3:  UMI count=302604 |  num t-points before testing:  233  num significant t-points:  201 , num t-points after removing overlap:  180
chr4:  UMI count=282446 |  num t-points before testing:  274  num significant t-points:  240 , num t-points after removing overlap:  216
chr4_GL456216_random:  UMI count=63 |  num t-points before testing:  0  num significant t-points:  0 chr5:  UMI count=287635 |  num t-points before testing:  266  num significant t-points:  230 , num t-points after removing overlap:  209
chr5_JH584299_random:  UMI count=88 |  num t-points before testing:  0  num significant t-points:  0 chr6:  UMI count=282862 |  num t-points before testing:  276  num significant t-points:  248 , num t-points after removing overlap:  228
chr7:  UMI count=260132 |  num t-points before testing:  273  num significant t-points:  232 , num t-points after removing overlap:  216
chr8:  UMI count=240975 |  num t-points before testing:  241  num significant t-points:  212 , num t-points after removing overlap:  188
chr9:  UMI count=257416 |  num t-points before testing:  310  num significant t-points:  278 , num t-points after removing overlap:  247
chrM:  UMI count=288 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456239:  UMI count=104 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456360:  UMI count=69 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456367:  UMI count=40 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456368:  UMI count=19 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456372:  UMI count=73 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456381:  UMI count=7 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456383:  UMI count=714 |  num t-points before testing:  10  num significant t-points:  7 , num t-points after removing overlap:  7
chrUn_GL456385:  UMI count=51 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456387:  UMI count=50 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456389:  UMI count=11735 |  num t-points before testing:  12  num significant t-points:  9 , num t-points after removing overlap:  6
chrUn_GL456390:  UMI count=321 |  num t-points before testing:  7  num significant t-points:  5 , num t-points after removing overlap:  5
chrUn_GL456392:  UMI count=1895 |  num t-points before testing:  20  num significant t-points:  19 , num t-points after removing overlap:  12
chrUn_GL456393:  UMI count=439 |  num t-points before testing:  7  num significant t-points:  6 , num t-points after removing overlap:  6
chrUn_GL456394:  UMI count=36 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456396:  UMI count=508 |  num t-points before testing:  3  num significant t-points:  2 , num t-points after removing overlap:  2
chrUn_JH584304:  UMI count=3237 |  num t-points before testing:  24  num significant t-points:  18 , num t-points after removing overlap:  16
chrX:  UMI count=133609 |  num t-points before testing:  89  num significant t-points:  75 , num t-points after removing overlap:  69
chrX_GL456233_random:  UMI count=324 |  num t-points before testing:  0  num significant t-points:  0 chrY:  UMI count=409 |  num t-points before testing:  1  num significant t-points:  1 , num t-points after removing overlap:  1
Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced.
** List of binding matrix hits to genome not provided, some of the graphical results are not printed.
succesful!
Running FastQC... done!
Calling peaks...
peakC6.py TAL1-G1E-Rep1-GSM1689020.35mers.unique.bam TAL1-G1E-Rep1-GSM1689020-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0
succesful!
Plotting results... succesful!
PeakXus succesfully terminated!