chr10: UMI count=228937 | num t-points before testing: 942 num significant t-points: 738 , num t-points after removing overlap: 685 chr11: UMI count=293405 | num t-points before testing: 1813 num significant t-points: 1463 , num t-points after removing overlap: 1325 chr12: UMI count=224445 | num t-points before testing: 933 num significant t-points: 731 , num t-points after removing overlap: 670 chr13: UMI count=229281 | num t-points before testing: 913 num significant t-points: 736 , num t-points after removing overlap: 692 chr14: UMI count=225398 | num t-points before testing: 767 num significant t-points: 579 , num t-points after removing overlap: 537 chr15: UMI count=197004 | num t-points before testing: 913 num significant t-points: 736 , num t-points after removing overlap: 670 chr16: UMI count=182322 | num t-points before testing: 763 num significant t-points: 620 , num t-points after removing overlap: 570 chr17: UMI count=182777 | num t-points before testing: 1020 num significant t-points: 825 , num t-points after removing overlap: 731 chr18: UMI count=164144 | num t-points before testing: 640 num significant t-points: 484 , num t-points after removing overlap: 447 chr19: UMI count=134538 | num t-points before testing: 762 num significant t-points: 602 , num t-points after removing overlap: 561 chr1: UMI count=469321 | num t-points before testing: 1970 num significant t-points: 1521 , num t-points after removing overlap: 1371 chr1_GL456210_random: UMI count=52 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456211_random: UMI count=128 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456212_random: UMI count=143 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456221_random: UMI count=92 | num t-points before testing: 0 num significant t-points: 0 chr2: UMI count=415792 | num t-points before testing: 1754 num significant t-points: 1401 , num t-points after removing overlap: 1265 chr3: UMI count=360451 | num t-points before testing: 1530 num significant t-points: 1177 , num t-points after removing overlap: 1074 chr4: UMI count=312597 | num t-points before testing: 1510 num significant t-points: 1200 , num t-points after removing overlap: 1075 chr4_GL456216_random: UMI count=88 | num t-points before testing: 1 num significant t-points: 0 chr5: UMI count=292274 | num t-points before testing: 1361 num significant t-points: 1098 , num t-points after removing overlap: 1016 chr5_JH584299_random: UMI count=87 | num t-points before testing: 0 num significant t-points: 0 chr6: UMI count=279800 | num t-points before testing: 1185 num significant t-points: 913 , num t-points after removing overlap: 834 chr7: UMI count=350947 | num t-points before testing: 1850 num significant t-points: 1481 , num t-points after removing overlap: 1341 chr8: UMI count=242909 | num t-points before testing: 1132 num significant t-points: 909 , num t-points after removing overlap: 821 chr9: UMI count=279255 | num t-points before testing: 1384 num significant t-points: 1101 , num t-points after removing overlap: 978 chrM: UMI count=897 | num t-points before testing: 17 num significant t-points: 11 , num t-points after removing overlap: 11 chrUn_GL456239: UMI count=99 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456360: UMI count=56 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456366: UMI count=51 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456367: UMI count=30 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456368: UMI count=51 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chrUn_GL456372: UMI count=11 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456378: UMI count=18 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456379: UMI count=43 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456381: UMI count=21 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456383: UMI count=391 | num t-points before testing: 13 num significant t-points: 7 , num t-points after removing overlap: 7 chrUn_GL456385: UMI count=34 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456387: UMI count=28 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chrUn_GL456389: UMI count=5510 | num t-points before testing: 11 num significant t-points: 8 , num t-points after removing overlap: 7 chrUn_GL456390: UMI count=169 | num t-points before testing: 6 num significant t-points: 3 , num t-points after removing overlap: 3 chrUn_GL456392: UMI count=797 | num t-points before testing: 16 num significant t-points: 14 , num t-points after removing overlap: 11 chrUn_GL456393: UMI count=220 | num t-points before testing: 9 num significant t-points: 4 , num t-points after removing overlap: 4 chrUn_GL456394: UMI count=14 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456396: UMI count=209 | num t-points before testing: 2 num significant t-points: 2 , num t-points after removing overlap: 2 chrUn_JH584304: UMI count=2422 | num t-points before testing: 45 num significant t-points: 36 , num t-points after removing overlap: 35 chrX: UMI count=117288 | num t-points before testing: 252 num significant t-points: 194 , num t-points after removing overlap: 188 chrX_GL456233_random: UMI count=230 | num t-points before testing: 0 num significant t-points: 0 chrY: UMI count=416 | num t-points before testing: 2 num significant t-points: 1 , num t-points after removing overlap: 1 Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced. ** List of binding matrix hits to genome not provided, some of the graphical results are not printed. succesful! Running FastQC... done! Calling peaks... peakC6.py GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam GATA1-G1E-ER4-24h-Rep2-GSM1689018-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0 succesful! Plotting results... succesful! PeakXus succesfully terminated!