chr10: UMI count=261281 | num t-points before testing: 836 num significant t-points: 590 , num t-points after removing overlap: 541 chr11: UMI count=301154 | num t-points before testing: 1201 num significant t-points: 836 , num t-points after removing overlap: 777 chr12: UMI count=345809 | num t-points before testing: 1164 num significant t-points: 860 , num t-points after removing overlap: 770 chr13: UMI count=260078 | num t-points before testing: 799 num significant t-points: 563 , num t-points after removing overlap: 515 chr14: UMI count=286470 | num t-points before testing: 750 num significant t-points: 532 , num t-points after removing overlap: 478 chr15: UMI count=224773 | num t-points before testing: 727 num significant t-points: 516 , num t-points after removing overlap: 461 chr16: UMI count=213458 | num t-points before testing: 708 num significant t-points: 517 , num t-points after removing overlap: 463 chr17: UMI count=203935 | num t-points before testing: 857 num significant t-points: 611 , num t-points after removing overlap: 520 chr18: UMI count=197313 | num t-points before testing: 593 num significant t-points: 423 , num t-points after removing overlap: 390 chr19: UMI count=147071 | num t-points before testing: 612 num significant t-points: 457 , num t-points after removing overlap: 413 chr1: UMI count=564880 | num t-points before testing: 1762 num significant t-points: 1298 , num t-points after removing overlap: 1204 chr1_GL456210_random: UMI count=143 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456211_random: UMI count=155 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456212_random: UMI count=126 | num t-points before testing: 2 num significant t-points: 0 chr1_GL456221_random: UMI count=90 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chr2: UMI count=498588 | num t-points before testing: 1308 num significant t-points: 926 , num t-points after removing overlap: 853 chr3: UMI count=329402 | num t-points before testing: 932 num significant t-points: 667 , num t-points after removing overlap: 610 chr4: UMI count=329299 | num t-points before testing: 997 num significant t-points: 713 , num t-points after removing overlap: 664 chr4_GL456216_random: UMI count=86 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chr4_JH584292_random: UMI count=13 | num t-points before testing: 0 num significant t-points: 0 chr5: UMI count=328205 | num t-points before testing: 1073 num significant t-points: 774 , num t-points after removing overlap: 723 chr5_JH584299_random: UMI count=65 | num t-points before testing: 0 num significant t-points: 0 chr6: UMI count=321213 | num t-points before testing: 972 num significant t-points: 696 , num t-points after removing overlap: 638 chr7: UMI count=307264 | num t-points before testing: 1018 num significant t-points: 698 , num t-points after removing overlap: 648 chr8: UMI count=282657 | num t-points before testing: 970 num significant t-points: 665 , num t-points after removing overlap: 610 chr9: UMI count=305037 | num t-points before testing: 1003 num significant t-points: 707 , num t-points after removing overlap: 651 chrM: UMI count=202 | num t-points before testing: 2 num significant t-points: 2 , num t-points after removing overlap: 2 chrUn_GL456239: UMI count=113 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456359: UMI count=15 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456360: UMI count=48 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456366: UMI count=74 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456367: UMI count=72 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456368: UMI count=67 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456372: UMI count=19 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456378: UMI count=80 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456379: UMI count=45 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456381: UMI count=43 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456383: UMI count=1163 | num t-points before testing: 21 num significant t-points: 16 , num t-points after removing overlap: 16 chrUn_GL456385: UMI count=52 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456387: UMI count=67 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456389: UMI count=14628 | num t-points before testing: 24 num significant t-points: 20 , num t-points after removing overlap: 16 chrUn_GL456390: UMI count=717 | num t-points before testing: 13 num significant t-points: 13 , num t-points after removing overlap: 13 chrUn_GL456392: UMI count=3488 | num t-points before testing: 42 num significant t-points: 40 , num t-points after removing overlap: 26 chrUn_GL456393: UMI count=624 | num t-points before testing: 16 num significant t-points: 11 , num t-points after removing overlap: 11 chrUn_GL456396: UMI count=520 | num t-points before testing: 7 num significant t-points: 7 , num t-points after removing overlap: 6 chrUn_JH584304: UMI count=4878 | num t-points before testing: 86 num significant t-points: 69 , num t-points after removing overlap: 63 chrX: UMI count=141692 | num t-points before testing: 236 num significant t-points: 170 , num t-points after removing overlap: 157 chrX_GL456233_random: UMI count=237 | num t-points before testing: 0 num significant t-points: 0 chrY: UMI count=432 | num t-points before testing: 5 num significant t-points: 4 , num t-points after removing overlap: 4 Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced. ** List of binding matrix hits to genome not provided, some of the graphical results are not printed. succesful! Running FastQC... done! Calling peaks... peakC6.py TAL1-G1E-Rep4-GSM1689023.35mers.unique.bam TAL1-G1E-Rep4-GSM1689023-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0 succesful! Plotting results... succesful! PeakXus succesfully terminated!