chr10:  UMI count=213795 |  num t-points before testing:  289  num significant t-points:  243 , num t-points after removing overlap:  223
chr11:  UMI count=255496 |  num t-points before testing:  431  num significant t-points:  330 , num t-points after removing overlap:  320
chr12:  UMI count=270548 |  num t-points before testing:  363  num significant t-points:  309 , num t-points after removing overlap:  281
chr13:  UMI count=209968 |  num t-points before testing:  267  num significant t-points:  208 , num t-points after removing overlap:  195
chr14:  UMI count=222901 |  num t-points before testing:  231  num significant t-points:  194 , num t-points after removing overlap:  164
chr15:  UMI count=182701 |  num t-points before testing:  222  num significant t-points:  180 , num t-points after removing overlap:  166
chr16:  UMI count=175931 |  num t-points before testing:  248  num significant t-points:  202 , num t-points after removing overlap:  184
chr17:  UMI count=165916 |  num t-points before testing:  290  num significant t-points:  241 , num t-points after removing overlap:  224
chr18:  UMI count=160608 |  num t-points before testing:  194  num significant t-points:  167 , num t-points after removing overlap:  152
chr19:  UMI count=123724 |  num t-points before testing:  202  num significant t-points:  176 , num t-points after removing overlap:  164
chr1:  UMI count=447856 |  num t-points before testing:  484  num significant t-points:  409 , num t-points after removing overlap:  384
chr1_GL456210_random:  UMI count=82 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456211_random:  UMI count=159 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456212_random:  UMI count=102 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456221_random:  UMI count=151 |  num t-points before testing:  0  num significant t-points:  0 chr2:  UMI count=395078 |  num t-points before testing:  428  num significant t-points:  344 , num t-points after removing overlap:  315
chr3:  UMI count=261664 |  num t-points before testing:  290  num significant t-points:  237 , num t-points after removing overlap:  217
chr4:  UMI count=269022 |  num t-points before testing:  332  num significant t-points:  262 , num t-points after removing overlap:  246
chr4_GL456216_random:  UMI count=98 |  num t-points before testing:  0  num significant t-points:  0 chr5:  UMI count=269219 |  num t-points before testing:  349  num significant t-points:  276 , num t-points after removing overlap:  259
chr5_JH584299_random:  UMI count=34 |  num t-points before testing:  0  num significant t-points:  0 chr6:  UMI count=261190 |  num t-points before testing:  326  num significant t-points:  259 , num t-points after removing overlap:  237
chr7:  UMI count=248528 |  num t-points before testing:  337  num significant t-points:  253 , num t-points after removing overlap:  233
chr8:  UMI count=233058 |  num t-points before testing:  358  num significant t-points:  296 , num t-points after removing overlap:  272
chr9:  UMI count=241425 |  num t-points before testing:  372  num significant t-points:  308 , num t-points after removing overlap:  279
chrM:  UMI count=42 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456239:  UMI count=168 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456360:  UMI count=55 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456366:  UMI count=21 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456367:  UMI count=82 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456378:  UMI count=51 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456381:  UMI count=3 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456383:  UMI count=1114 |  num t-points before testing:  6  num significant t-points:  5 , num t-points after removing overlap:  5
chrUn_GL456387:  UMI count=65 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456389:  UMI count=9923 |  num t-points before testing:  9  num significant t-points:  5 , num t-points after removing overlap:  3
chrUn_GL456390:  UMI count=586 |  num t-points before testing:  5  num significant t-points:  4 , num t-points after removing overlap:  4
chrUn_GL456392:  UMI count=2935 |  num t-points before testing:  24  num significant t-points:  23 , num t-points after removing overlap:  15
chrUn_GL456393:  UMI count=402 |  num t-points before testing:  3  num significant t-points:  1 , num t-points after removing overlap:  1
chrUn_GL456394:  UMI count=42 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456396:  UMI count=571 |  num t-points before testing:  2  num significant t-points:  2 , num t-points after removing overlap:  2
chrUn_JH584304:  UMI count=3909 |  num t-points before testing:  22  num significant t-points:  15 , num t-points after removing overlap:  12
chrX:  UMI count=110731 |  num t-points before testing:  67  num significant t-points:  52 , num t-points after removing overlap:  52
chrX_GL456233_random:  UMI count=190 |  num t-points before testing:  0  num significant t-points:  0 chrY:  UMI count=259 |  num t-points before testing:  1  num significant t-points:  0
Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced.
** List of binding matrix hits to genome not provided, some of the graphical results are not printed.
succesful!
Running FastQC... done!
Calling peaks...
peakC6.py TAL1-G1E-Rep2-GSM1689021.35mers.unique.bam TAL1-G1E-Rep2-GSM1689021-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0
succesful!
Plotting results... succesful!
PeakXus succesfully terminated!