chr10: UMI count=140957 | num t-points before testing: 337 num significant t-points: 208 , num t-points after removing overlap: 200 chr11: UMI count=165773 | num t-points before testing: 535 num significant t-points: 355 , num t-points after removing overlap: 347 chr12: UMI count=152095 | num t-points before testing: 357 num significant t-points: 217 , num t-points after removing overlap: 210 chr13: UMI count=141402 | num t-points before testing: 315 num significant t-points: 198 , num t-points after removing overlap: 195 chr14: UMI count=151965 | num t-points before testing: 309 num significant t-points: 218 , num t-points after removing overlap: 197 chr15: UMI count=121365 | num t-points before testing: 299 num significant t-points: 203 , num t-points after removing overlap: 191 chr16: UMI count=113135 | num t-points before testing: 254 num significant t-points: 163 , num t-points after removing overlap: 160 chr17: UMI count=112113 | num t-points before testing: 396 num significant t-points: 264 , num t-points after removing overlap: 242 chr18: UMI count=104071 | num t-points before testing: 234 num significant t-points: 157 , num t-points after removing overlap: 147 chr19: UMI count=77369 | num t-points before testing: 235 num significant t-points: 141 , num t-points after removing overlap: 138 chr1: UMI count=303744 | num t-points before testing: 734 num significant t-points: 515 , num t-points after removing overlap: 496 chr1_GL456210_random: UMI count=42 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456211_random: UMI count=106 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456212_random: UMI count=86 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456221_random: UMI count=66 | num t-points before testing: 0 num significant t-points: 0 chr2: UMI count=269205 | num t-points before testing: 536 num significant t-points: 344 , num t-points after removing overlap: 312 chr3: UMI count=175697 | num t-points before testing: 367 num significant t-points: 247 , num t-points after removing overlap: 242 chr4: UMI count=174915 | num t-points before testing: 416 num significant t-points: 266 , num t-points after removing overlap: 255 chr4_GL456216_random: UMI count=91 | num t-points before testing: 1 num significant t-points: 0 chr4_JH584292_random: UMI count=19 | num t-points before testing: 0 num significant t-points: 0 chr5: UMI count=178367 | num t-points before testing: 428 num significant t-points: 286 , num t-points after removing overlap: 275 chr5_JH584299_random: UMI count=61 | num t-points before testing: 0 num significant t-points: 0 chr6: UMI count=172599 | num t-points before testing: 446 num significant t-points: 276 , num t-points after removing overlap: 268 chr7: UMI count=208692 | num t-points before testing: 613 num significant t-points: 372 , num t-points after removing overlap: 352 chr8: UMI count=148664 | num t-points before testing: 387 num significant t-points: 263 , num t-points after removing overlap: 256 chr9: UMI count=172842 | num t-points before testing: 522 num significant t-points: 374 , num t-points after removing overlap: 338 chrM: UMI count=139 | num t-points before testing: 1 num significant t-points: 0 chrUn_GL456239: UMI count=68 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456360: UMI count=18 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456366: UMI count=46 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456367: UMI count=13 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456368: UMI count=33 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456372: UMI count=3 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456378: UMI count=41 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456379: UMI count=16 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456381: UMI count=33 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456383: UMI count=603 | num t-points before testing: 8 num significant t-points: 8 , num t-points after removing overlap: 8 chrUn_GL456385: UMI count=25 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456387: UMI count=30 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456389: UMI count=7651 | num t-points before testing: 9 num significant t-points: 8 , num t-points after removing overlap: 6 chrUn_GL456390: UMI count=369 | num t-points before testing: 4 num significant t-points: 4 , num t-points after removing overlap: 4 chrUn_GL456392: UMI count=1933 | num t-points before testing: 30 num significant t-points: 29 , num t-points after removing overlap: 19 chrUn_GL456393: UMI count=280 | num t-points before testing: 5 num significant t-points: 4 , num t-points after removing overlap: 4 chrUn_GL456394: UMI count=10 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456396: UMI count=334 | num t-points before testing: 7 num significant t-points: 5 , num t-points after removing overlap: 5 chrUn_JH584304: UMI count=2780 | num t-points before testing: 31 num significant t-points: 21 , num t-points after removing overlap: 17 chrX: UMI count=75117 | num t-points before testing: 90 num significant t-points: 57 , num t-points after removing overlap: 57 chrX_GL456233_random: UMI count=115 | num t-points before testing: 0 num significant t-points: 0 chrY: UMI count=243 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced. ** List of binding matrix hits to genome not provided, some of the graphical results are not printed. succesful! Running FastQC... done! Calling peaks... peakC6.py TAL1-G1E-ER4-3h-Rep2-GSM1689031.35mers.unique.bam TAL1-G1E-ER4-3h-Rep2-GSM1689031-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0 succesful! Plotting results... succesful! PeakXus succesfully terminated!