chr10: UMI count=168019 | num t-points before testing: 403 num significant t-points: 292 , num t-points after removing overlap: 275 chr11: UMI count=201372 | num t-points before testing: 739 num significant t-points: 502 , num t-points after removing overlap: 477 chr12: UMI count=194511 | num t-points before testing: 493 num significant t-points: 364 , num t-points after removing overlap: 342 chr13: UMI count=169330 | num t-points before testing: 382 num significant t-points: 279 , num t-points after removing overlap: 268 chr14: UMI count=182052 | num t-points before testing: 361 num significant t-points: 268 , num t-points after removing overlap: 243 chr15: UMI count=147419 | num t-points before testing: 380 num significant t-points: 270 , num t-points after removing overlap: 249 chr16: UMI count=134058 | num t-points before testing: 341 num significant t-points: 248 , num t-points after removing overlap: 231 chr17: UMI count=136889 | num t-points before testing: 537 num significant t-points: 397 , num t-points after removing overlap: 361 chr18: UMI count=127452 | num t-points before testing: 305 num significant t-points: 212 , num t-points after removing overlap: 197 chr19: UMI count=93607 | num t-points before testing: 290 num significant t-points: 208 , num t-points after removing overlap: 200 chr1: UMI count=362392 | num t-points before testing: 877 num significant t-points: 646 , num t-points after removing overlap: 595 chr1_GL456210_random: UMI count=54 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456211_random: UMI count=123 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chr1_GL456212_random: UMI count=31 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456221_random: UMI count=50 | num t-points before testing: 0 num significant t-points: 0 chr2: UMI count=319716 | num t-points before testing: 733 num significant t-points: 539 , num t-points after removing overlap: 501 chr3: UMI count=210651 | num t-points before testing: 432 num significant t-points: 295 , num t-points after removing overlap: 283 chr4: UMI count=211525 | num t-points before testing: 557 num significant t-points: 402 , num t-points after removing overlap: 378 chr4_GL456216_random: UMI count=96 | num t-points before testing: 1 num significant t-points: 0 chr5: UMI count=213566 | num t-points before testing: 575 num significant t-points: 405 , num t-points after removing overlap: 380 chr5_JH584299_random: UMI count=30 | num t-points before testing: 0 num significant t-points: 0 chr6: UMI count=207540 | num t-points before testing: 523 num significant t-points: 383 , num t-points after removing overlap: 357 chr7: UMI count=255259 | num t-points before testing: 857 num significant t-points: 630 , num t-points after removing overlap: 581 chr8: UMI count=179569 | num t-points before testing: 492 num significant t-points: 350 , num t-points after removing overlap: 321 chr9: UMI count=207273 | num t-points before testing: 680 num significant t-points: 528 , num t-points after removing overlap: 483 chrM: UMI count=123 | num t-points before testing: 2 num significant t-points: 1 , num t-points after removing overlap: 1 chrUn_GL456239: UMI count=152 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456359: UMI count=21 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456360: UMI count=22 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456366: UMI count=26 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456367: UMI count=20 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456368: UMI count=48 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456370: UMI count=11 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456378: UMI count=28 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456379: UMI count=12 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456381: UMI count=18 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456383: UMI count=683 | num t-points before testing: 12 num significant t-points: 6 , num t-points after removing overlap: 6 chrUn_GL456387: UMI count=69 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456389: UMI count=8704 | num t-points before testing: 16 num significant t-points: 13 , num t-points after removing overlap: 8 chrUn_GL456390: UMI count=389 | num t-points before testing: 9 num significant t-points: 6 , num t-points after removing overlap: 6 chrUn_GL456392: UMI count=2234 | num t-points before testing: 32 num significant t-points: 29 , num t-points after removing overlap: 17 chrUn_GL456393: UMI count=403 | num t-points before testing: 7 num significant t-points: 5 , num t-points after removing overlap: 5 chrUn_GL456396: UMI count=393 | num t-points before testing: 6 num significant t-points: 4 , num t-points after removing overlap: 4 chrUn_JH584304: UMI count=3032 | num t-points before testing: 38 num significant t-points: 32 , num t-points after removing overlap: 27 chrX: UMI count=89899 | num t-points before testing: 91 num significant t-points: 69 , num t-points after removing overlap: 67 chrX_GL456233_random: UMI count=184 | num t-points before testing: 0 num significant t-points: 0 chrY: UMI count=225 | num t-points before testing: 2 num significant t-points: 1 , num t-points after removing overlap: 1 Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced. ** List of binding matrix hits to genome not provided, some of the graphical results are not printed. succesful! Running FastQC... done! Calling peaks... peakC6.py TAL1-G1E-ER4-24h-Rep2-GSM1689034.35mers.unique.bam TAL1-G1E-ER4-24h-Rep2-GSM1689034-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0 succesful! Plotting results... succesful! PeakXus succesfully terminated!