chr10: UMI count=367318 | num t-points before testing: 433 num significant t-points: 362 , num t-points after removing overlap: 332 chr11: UMI count=446977 | num t-points before testing: 740 num significant t-points: 628 , num t-points after removing overlap: 593 chr12: UMI count=426658 | num t-points before testing: 522 num significant t-points: 442 , num t-points after removing overlap: 406 chr13: UMI count=371308 | num t-points before testing: 364 num significant t-points: 291 , num t-points after removing overlap: 273 chr14: UMI count=396951 | num t-points before testing: 372 num significant t-points: 315 , num t-points after removing overlap: 272 chr15: UMI count=325972 | num t-points before testing: 420 num significant t-points: 361 , num t-points after removing overlap: 326 chr16: UMI count=297103 | num t-points before testing: 326 num significant t-points: 270 , num t-points after removing overlap: 248 chr17: UMI count=302056 | num t-points before testing: 554 num significant t-points: 487 , num t-points after removing overlap: 434 chr18: UMI count=276116 | num t-points before testing: 312 num significant t-points: 250 , num t-points after removing overlap: 221 chr19: UMI count=209666 | num t-points before testing: 306 num significant t-points: 273 , num t-points after removing overlap: 253 chr1: UMI count=790518 | num t-points before testing: 912 num significant t-points: 766 , num t-points after removing overlap: 687 chr1_GL456210_random: UMI count=133 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456211_random: UMI count=230 | num t-points before testing: 0 num significant t-points: 0 chr1_GL456212_random: UMI count=190 | num t-points before testing: 1 num significant t-points: 0 chr1_GL456221_random: UMI count=200 | num t-points before testing: 0 num significant t-points: 0 chr2: UMI count=699601 | num t-points before testing: 689 num significant t-points: 568 , num t-points after removing overlap: 513 chr3: UMI count=464071 | num t-points before testing: 462 num significant t-points: 383 , num t-points after removing overlap: 359 chr4: UMI count=469098 | num t-points before testing: 573 num significant t-points: 490 , num t-points after removing overlap: 451 chr4_GL456216_random: UMI count=159 | num t-points before testing: 0 num significant t-points: 0 chr5: UMI count=469708 | num t-points before testing: 564 num significant t-points: 475 , num t-points after removing overlap: 436 chr5_JH584299_random: UMI count=33 | num t-points before testing: 0 num significant t-points: 0 chr6: UMI count=457042 | num t-points before testing: 581 num significant t-points: 502 , num t-points after removing overlap: 446 chr7: UMI count=571152 | num t-points before testing: 822 num significant t-points: 703 , num t-points after removing overlap: 630 chr8: UMI count=403330 | num t-points before testing: 552 num significant t-points: 464 , num t-points after removing overlap: 423 chr9: UMI count=465650 | num t-points before testing: 731 num significant t-points: 641 , num t-points after removing overlap: 575 chrM: UMI count=201 | num t-points before testing: 1 num significant t-points: 1 , num t-points after removing overlap: 1 chrUn_GL456239: UMI count=179 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456359: UMI count=37 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456360: UMI count=51 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456366: UMI count=13 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456367: UMI count=60 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456368: UMI count=115 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456370: UMI count=40 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456372: UMI count=23 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456378: UMI count=35 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456379: UMI count=41 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456381: UMI count=43 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456382: UMI count=25 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456383: UMI count=1453 | num t-points before testing: 10 num significant t-points: 7 , num t-points after removing overlap: 7 chrUn_GL456387: UMI count=58 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456389: UMI count=18161 | num t-points before testing: 18 num significant t-points: 16 , num t-points after removing overlap: 13 chrUn_GL456390: UMI count=1107 | num t-points before testing: 9 num significant t-points: 9 , num t-points after removing overlap: 9 chrUn_GL456392: UMI count=5260 | num t-points before testing: 41 num significant t-points: 40 , num t-points after removing overlap: 21 chrUn_GL456393: UMI count=963 | num t-points before testing: 11 num significant t-points: 9 , num t-points after removing overlap: 9 chrUn_GL456394: UMI count=22 | num t-points before testing: 0 num significant t-points: 0 chrUn_GL456396: UMI count=678 | num t-points before testing: 5 num significant t-points: 4 , num t-points after removing overlap: 4 chrUn_JH584304: UMI count=6225 | num t-points before testing: 35 num significant t-points: 26 , num t-points after removing overlap: 22 chrX: UMI count=189895 | num t-points before testing: 102 num significant t-points: 81 , num t-points after removing overlap: 77 chrX_GL456233_random: UMI count=377 | num t-points before testing: 0 num significant t-points: 0 chrY: UMI count=484 | num t-points before testing: 2 num significant t-points: 2 , num t-points after removing overlap: 2 Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced. ** List of binding matrix hits to genome not provided, some of the graphical results are not printed. succesful! Running FastQC... done! Calling peaks... peakC6.py TAL1-G1E-ER4-24h-Rep2-GSM1689033.35mers.unique.bam TAL1-G1E-ER4-24h-Rep2-GSM1689033-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0 succesful! Plotting results... succesful! PeakXus succesfully terminated!