chr10:  UMI count=153649 |  num t-points before testing:  143  num significant t-points:  108 , num t-points after removing overlap:  104
chr11:  UMI count=189259 |  num t-points before testing:  263  num significant t-points:  203 , num t-points after removing overlap:  197
chr12:  UMI count=173220 |  num t-points before testing:  161  num significant t-points:  121 , num t-points after removing overlap:  116
chr13:  UMI count=152406 |  num t-points before testing:  122  num significant t-points:  92 , num t-points after removing overlap:  91
chr14:  UMI count=160466 |  num t-points before testing:  125  num significant t-points:  110 , num t-points after removing overlap:  97
chr15:  UMI count=134997 |  num t-points before testing:  133  num significant t-points:  103 , num t-points after removing overlap:  96
chr16:  UMI count=121421 |  num t-points before testing:  103  num significant t-points:  77 , num t-points after removing overlap:  73
chr17:  UMI count=127421 |  num t-points before testing:  175  num significant t-points:  142 , num t-points after removing overlap:  136
chr18:  UMI count=114405 |  num t-points before testing:  95  num significant t-points:  74 , num t-points after removing overlap:  71
chr19:  UMI count=89352 |  num t-points before testing:  97  num significant t-points:  74 , num t-points after removing overlap:  72
chr1:  UMI count=324225 |  num t-points before testing:  269  num significant t-points:  209 , num t-points after removing overlap:  200
chr1_GL456210_random:  UMI count=129 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456211_random:  UMI count=57 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456212_random:  UMI count=76 |  num t-points before testing:  0  num significant t-points:  0 chr1_GL456221_random:  UMI count=13 |  num t-points before testing:  0  num significant t-points:  0 chr2:  UMI count=288960 |  num t-points before testing:  237  num significant t-points:  183 , num t-points after removing overlap:  167
chr3:  UMI count=190465 |  num t-points before testing:  152  num significant t-points:  111 , num t-points after removing overlap:  108
chr4:  UMI count=195479 |  num t-points before testing:  176  num significant t-points:  124 , num t-points after removing overlap:  117
chr4_GL456216_random:  UMI count=26 |  num t-points before testing:  0  num significant t-points:  0 chr5:  UMI count=198354 |  num t-points before testing:  217  num significant t-points:  153 , num t-points after removing overlap:  146
chr5_JH584299_random:  UMI count=16 |  num t-points before testing:  0  num significant t-points:  0 chr6:  UMI count=189098 |  num t-points before testing:  191  num significant t-points:  145 , num t-points after removing overlap:  142
chr7:  UMI count=233345 |  num t-points before testing:  262  num significant t-points:  206 , num t-points after removing overlap:  194
chr8:  UMI count=166731 |  num t-points before testing:  198  num significant t-points:  159 , num t-points after removing overlap:  151
chr9:  UMI count=189905 |  num t-points before testing:  246  num significant t-points:  198 , num t-points after removing overlap:  185
chrM:  UMI count=95 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456239:  UMI count=122 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456372:  UMI count=4 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456381:  UMI count=2 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456383:  UMI count=911 |  num t-points before testing:  7  num significant t-points:  2 , num t-points after removing overlap:  2
chrUn_GL456387:  UMI count=17 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456389:  UMI count=8002 |  num t-points before testing:  4  num significant t-points:  4 , num t-points after removing overlap:  3
chrUn_GL456390:  UMI count=393 |  num t-points before testing:  4  num significant t-points:  2 , num t-points after removing overlap:  2
chrUn_GL456392:  UMI count=1923 |  num t-points before testing:  21  num significant t-points:  19 , num t-points after removing overlap:  10
chrUn_GL456393:  UMI count=340 |  num t-points before testing:  0  num significant t-points:  0 chrUn_GL456396:  UMI count=314 |  num t-points before testing:  3  num significant t-points:  1 , num t-points after removing overlap:  1
chrUn_JH584304:  UMI count=2808 |  num t-points before testing:  15  num significant t-points:  12 , num t-points after removing overlap:  12
chrX:  UMI count=77507 |  num t-points before testing:  27  num significant t-points:  21 , num t-points after removing overlap:  21
chrX_GL456233_random:  UMI count=119 |  num t-points before testing:  0  num significant t-points:  0 chrY:  UMI count=207 |  num t-points before testing:  2  num significant t-points:  2 , num t-points after removing overlap:  2
Testing input parameters... ** Reference genome file in fasta-format not given, some of the graphical output is not produced.
** List of binding matrix hits to genome not provided, some of the graphical results are not printed.
succesful!
Running FastQC... done!
Calling peaks...
peakC6.py TAL1-G1E-ER4-24h-Rep1-GSM1689032.35mers.unique.bam TAL1-G1E-ER4-24h-Rep1-GSM1689032-peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes -w 5 -l_l 60 -l 5 -b 0.05 -s 1 -n 1 -p 1.0
succesful!
Plotting results... succesful!
PeakXus succesfully terminated!