INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF75D-rep2-SRR5197232/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 9.32557821274 s Creating peak regions... Creating peak regions took 80.1725990772 s Estimating background... Estimating background took 78.5599222183 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.79528999329 s Creating peak regions... Creating peak regions took 45.6471669674 s Estimating background... Estimating background took 27.6511468887 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.98221707344 s Creating peak regions... Creating peak regions took 39.0957510471 s Estimating background... Estimating background took 24.9521009922 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF75D-rep2-SRR5197232/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 9.4726228714 s Creating peak regions... Creating peak regions took 80.5446147919 s Estimating background... Estimating background took 76.4295189381 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.63560199738 s Creating peak regions... Creating peak regions took 44.1977870464 s Estimating background... Estimating background took 28.0804800987 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.51539492607 s Creating peak regions... Creating peak regions took 42.114823103 s Estimating background... Estimating background took 27.5752379894 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.73806190491 s Creating peak regions... Creating peak regions took 41.7075738907 s Estimating background... Estimating background took 30.7002530098 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.0009059906 s Creating peak regions... Creating peak regions took 36.6612000465 s Estimating background... Estimating background took 30.8130879402 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.16209602356 s Creating peak regions... Creating peak regions took 32.7842121124 s Estimating background... Estimating background took 18.9629518986 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.93477296829 s Creating peak regions... Creating peak regions took 31.3686010838 s Estimating background... Estimating background took 21.0106678009 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.04973888397 s Creating peak regions... Creating peak regions took 28.1362161636 s Estimating background... Estimating background took 19.9763839245 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.35677909851 s Creating peak regions... Creating peak regions took 26.3888180256 s Estimating background... Estimating background took 22.8166329861 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.47217202187 s Creating peak regions... Creating peak regions took 23.5995550156 s Estimating background... Estimating background took 14.5215878487 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.8419649601 s Creating peak regions... Creating peak regions took 19.2520589828 s Estimating background... Estimating background took 21.9787149429 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 7.49251198769 s Creating peak regions... Creating peak regions took 76.4530279636 s Estimating background... Estimating background took 47.467952013 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.68187689781 s Creating peak regions... Creating peak regions took 22.1846778393 s Estimating background... Estimating background took 16.256262064 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.37169194221 s Creating peak regions... Creating peak regions took 15.3718628883 s Estimating background... Estimating background took 8.9464840889 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.93543410301 s Creating peak regions... Creating peak regions took 17.2683911324 s Estimating background... Estimating background took 16.2177171707 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.86983394623 s Creating peak regions... Creating peak regions took 60.9644770622 s Estimating background... Estimating background took 36.3502061367 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.47922301292 s Creating peak regions... Creating peak regions took 58.8483419418 s Estimating background... Estimating background took 29.735170126 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.92027187347 s Creating peak regions... Creating peak regions took 56.25978899 s Estimating background... Estimating background took 36.6060290337 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 6.20161604881 s Creating peak regions... Creating peak regions took 54.3302130699 s Estimating background... Estimating background took 40.3016529083 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.73204183578 s Creating peak regions... Creating peak regions took 51.4368200302 s Estimating background... Estimating background took 37.9010651112 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.66454696655 s Creating peak regions... Creating peak regions took 45.3475868702 s Estimating background... Estimating background took 25.3781168461 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.82864499092 s Creating peak regions... Creating peak regions took 41.3642818928 s Estimating background... Estimating background took 25.3699278831 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.118322849274 s Creating peak regions... Creating peak regions took 0.192104101181 s Estimating background... Estimating background took 0.663619995117 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.48205208778 s Creating peak regions... Creating peak regions took 47.9072878361 s Estimating background... Estimating background took 36.5364201069 s Processing ZNF75D-rep2-SRR5197232.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.204131126404 s Creating peak regions... Creating peak regions took 15.761690855 s Estimating background... Estimating background took 0.712216854095 s