INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF74-SRR5197230.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF74-SRR5197230/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 8.01866006851 s
Creating peak regions... Creating peak regions took 81.0892820358 s
Estimating background... Estimating background took 74.177273035 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.02647399902 s
Creating peak regions... Creating peak regions took 45.3783009052 s
Estimating background... Estimating background took 28.2900080681 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.6805729866 s
Creating peak regions... Creating peak regions took 39.9361898899 s
Estimating background... Estimating background took 26.2240099907 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF74-SRR5197230.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF74-SRR5197230/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 7.36881613731 s
Creating peak regions... Creating peak regions took 81.7885410786 s
Estimating background... Estimating background took 73.0754160881 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.87286901474 s
Creating peak regions... Creating peak regions took 44.0449159145 s
Estimating background... Estimating background took 28.3026850224 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.07801795006 s
Creating peak regions... Creating peak regions took 42.9240958691 s
Estimating background... Estimating background took 29.031028986 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.07301092148 s
Creating peak regions... Creating peak regions took 42.9615709782 s
Estimating background... Estimating background took 30.3685410023 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.59945416451 s
Creating peak regions... Creating peak regions took 36.8433511257 s
Estimating background... Estimating background took 28.9534459114 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.87999200821 s
Creating peak regions... Creating peak regions took 33.4892339706 s
Estimating background... Estimating background took 19.257682085 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.6776368618 s
Creating peak regions... Creating peak regions took 31.7229630947 s
Estimating background... Estimating background took 21.691313982 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.66304588318 s
Creating peak regions... Creating peak regions took 28.8769769669 s
Estimating background... Estimating background took 20.8070368767 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.09934806824 s
Creating peak regions... Creating peak regions took 27.2976970673 s
Estimating background... Estimating background took 24.9429337978 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.25830292702 s
Creating peak regions... Creating peak regions took 25.449244976 s
Estimating background... Estimating background took 14.1640040874 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.09913706779 s
Creating peak regions... Creating peak regions took 19.3271780014 s
Estimating background... Estimating background took 16.7734079361 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.67896103859 s
Creating peak regions... Creating peak regions took 76.7331061363 s
Estimating background... Estimating background took 47.2779810429 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.2178299427 s
Creating peak regions... Creating peak regions took 22.4976871014 s
Estimating background... Estimating background took 16.7053260803 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.30918502808 s
Creating peak regions... Creating peak regions took 14.7579419613 s
Estimating background... Estimating background took 8.93072080612 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.81768584251 s
Creating peak regions... Creating peak regions took 16.3503558636 s
Estimating background... Estimating background took 16.7391619682 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.24972701073 s
Creating peak regions... Creating peak regions took 63.6312639713 s
Estimating background... Estimating background took 37.4798491001 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.55909013748 s
Creating peak regions... Creating peak regions took 59.487582922 s
Estimating background... Estimating background took 26.8110501766 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.07816410065 s
Creating peak regions... Creating peak regions took 57.2373259068 s
Estimating background... Estimating background took 37.628098011 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.44530415535 s
Creating peak regions... Creating peak regions took 56.155039072 s
Estimating background... Estimating background took 39.733025074 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.87778401375 s
Creating peak regions... Creating peak regions took 51.7343351841 s
Estimating background... Estimating background took 36.9301841259 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.9101588726 s
Creating peak regions... Creating peak regions took 46.1077809334 s
Estimating background... Estimating background took 24.8154230118 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.35989284515 s
Creating peak regions... Creating peak regions took 41.8103218079 s
Estimating background... Estimating background took 25.1572790146 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.141148805618 s
Creating peak regions... Creating peak regions took 0.24858379364 s
Estimating background... Estimating background took 0.548582077026 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.71810412407 s
Creating peak regions... Creating peak regions took 48.9930000305 s
Estimating background... Estimating background took 38.53363204 s


Processing ZNF74-SRR5197230.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.321074008942 s
Creating peak regions... Creating peak regions took 16.3750150204 s
Estimating background... Estimating background took 0.765660047531 s