INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF620-SRR5197200.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF620-SRR5197200/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.950496912 s
Creating peak regions... Creating peak regions took 75.9691240788 s
Estimating background... Estimating background took 32.5991778374 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.46703910828 s
Creating peak regions... Creating peak regions took 38.0969429016 s
Estimating background... Estimating background took 13.2988460064 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.37967801094 s
Creating peak regions... Creating peak regions took 41.4486260414 s
Estimating background... Estimating background took 12.3345150948 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF620-SRR5197200.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF620-SRR5197200/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.35087609291 s
Creating peak regions... Creating peak regions took 74.2181129456 s
Estimating background... Estimating background took 31.2963469028 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.48803210258 s
Creating peak regions... Creating peak regions took 38.8078520298 s
Estimating background... Estimating background took 12.5893540382 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.37650108337 s
Creating peak regions... Creating peak regions took 40.9743831158 s
Estimating background... Estimating background took 12.6408429146 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.5020070076 s
Creating peak regions... Creating peak regions took 38.4805650711 s
Estimating background... Estimating background took 13.3102180958 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.24473404884 s
Creating peak regions... Creating peak regions took 35.0921339989 s
Estimating background... Estimating background took 14.707998991 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.77858090401 s
Creating peak regions... Creating peak regions took 30.4897170067 s
Estimating background... Estimating background took 8.70419383049 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.538367033 s
Creating peak regions... Creating peak regions took 30.2508051395 s
Estimating background... Estimating background took 9.17428898811 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.58358311653 s
Creating peak regions... Creating peak regions took 27.2070930004 s
Estimating background... Estimating background took 8.3663418293 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.76054906845 s
Creating peak regions... Creating peak regions took 25.8182690144 s
Estimating background... Estimating background took 10.1707239151 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.32563495636 s
Creating peak regions... Creating peak regions took 24.3804609776 s
Estimating background... Estimating background took 6.9894888401 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.091558218 s
Creating peak regions... Creating peak regions took 16.7639780045 s
Estimating background... Estimating background took 6.6562769413 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.90180015564 s
Creating peak regions... Creating peak regions took 74.5637021065 s
Estimating background... Estimating background took 21.8094010353 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.20929598808 s
Creating peak regions... Creating peak regions took 19.4982841015 s
Estimating background... Estimating background took 7.33166790009 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.768707990646 s
Creating peak regions... Creating peak regions took 14.486661911 s
Estimating background... Estimating background took 4.54475402832 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.0031311512 s
Creating peak regions... Creating peak regions took 15.6200540066 s
Estimating background... Estimating background took 6.4268348217 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.28897285461 s
Creating peak regions... Creating peak regions took 56.9912960529 s
Estimating background... Estimating background took 17.272521019 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.70952391624 s
Creating peak regions... Creating peak regions took 53.4726419449 s
Estimating background... Estimating background took 14.6169281006 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.09713387489 s
Creating peak regions... Creating peak regions took 52.0135469437 s
Estimating background... Estimating background took 17.2183020115 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.13863182068 s
Creating peak regions... Creating peak regions took 49.7907829285 s
Estimating background... Estimating background took 18.6888589859 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.90399098396 s
Creating peak regions... Creating peak regions took 49.278512001 s
Estimating background... Estimating background took 16.489511013 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.30477619171 s
Creating peak regions... Creating peak regions took 44.8842811584 s
Estimating background... Estimating background took 12.373415947 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.95048213005 s
Creating peak regions... Creating peak regions took 42.0837609768 s
Estimating background... Estimating background took 11.4616150856 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0888741016388 s
Creating peak regions... Creating peak regions took 0.172270059586 s
Estimating background... Estimating background took 0.65859913826 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.12969493866 s
Creating peak regions... Creating peak regions took 48.3698170185 s
Estimating background... Estimating background took 18.6020338535 s


Processing ZNF620-SRR5197200.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.105252027512 s
Creating peak regions... Creating peak regions took 15.4499371052 s
Estimating background... Estimating background took 0.524527072906 s