INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF33B-SRR5197121.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF33B-SRR5197121/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.85764980316 s Creating peak regions... Creating peak regions took 75.268422842 s Estimating background... Estimating background took 25.961619854 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.01731109619 s Creating peak regions... Creating peak regions took 39.5943479538 s Estimating background... Estimating background took 11.1560599804 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.12960386276 s Creating peak regions... Creating peak regions took 39.5421447754 s Estimating background... Estimating background took 11.3535299301 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF33B-SRR5197121.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF33B-SRR5197121/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.05040097237 s Creating peak regions... Creating peak regions took 73.6477000713 s Estimating background... Estimating background took 25.3909161091 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.02274179459 s Creating peak regions... Creating peak regions took 37.6306209564 s Estimating background... Estimating background took 11.6333630085 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.0906920433 s Creating peak regions... Creating peak regions took 40.1321821213 s Estimating background... Estimating background took 11.7036559582 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.68180990219 s Creating peak regions... Creating peak regions took 40.8134591579 s Estimating background... Estimating background took 12.1635379791 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.86222815514 s Creating peak regions... Creating peak regions took 36.3454298973 s Estimating background... Estimating background took 11.1710391045 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.45071816444 s Creating peak regions... Creating peak regions took 32.2996790409 s Estimating background... Estimating background took 7.78525185585 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.55661511421 s Creating peak regions... Creating peak regions took 28.8582000732 s Estimating background... Estimating background took 8.32735395432 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.41885089874 s Creating peak regions... Creating peak regions took 27.5637979507 s Estimating background... Estimating background took 8.4638209343 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.74370503426 s Creating peak regions... Creating peak regions took 24.8692719936 s Estimating background... Estimating background took 11.2927508354 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.08815002441 s Creating peak regions... Creating peak regions took 24.2395670414 s Estimating background... Estimating background took 5.3237760067 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.3359849453 s Creating peak regions... Creating peak regions took 17.1981010437 s Estimating background... Estimating background took 7.276512146 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.50309991837 s Creating peak regions... Creating peak regions took 71.6605241299 s Estimating background... Estimating background took 18.833739996 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.21755886078 s Creating peak regions... Creating peak regions took 20.1087501049 s Estimating background... Estimating background took 5.72416806221 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.674491882324 s Creating peak regions... Creating peak regions took 14.1838331223 s Estimating background... Estimating background took 3.83954787254 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.967279911041 s Creating peak regions... Creating peak regions took 15.3726239204 s Estimating background... Estimating background took 7.31553292274 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.74139499664 s Creating peak regions... Creating peak regions took 59.2664489746 s Estimating background... Estimating background took 14.4041390419 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.51338982582 s Creating peak regions... Creating peak regions took 57.2841780186 s Estimating background... Estimating background took 11.5186679363 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.69413781166 s Creating peak regions... Creating peak regions took 55.8351640701 s Estimating background... Estimating background took 13.5974028111 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.82350301743 s Creating peak regions... Creating peak regions took 51.0286450386 s Estimating background... Estimating background took 14.7007710934 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.72635197639 s Creating peak regions... Creating peak regions took 47.753975153 s Estimating background... Estimating background took 14.8495829105 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.32497596741 s Creating peak regions... Creating peak regions took 41.0007140636 s Estimating background... Estimating background took 10.0440359116 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.82785582542 s Creating peak regions... Creating peak regions took 42.0263149738 s Estimating background... Estimating background took 10.6363301277 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.0844740867615 s Creating peak regions... Creating peak regions took 0.16793012619 s Estimating background... Estimating background took 0.633818149567 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.85218977928 s Creating peak regions... Creating peak regions took 49.8082079887 s Estimating background... Estimating background took 13.1863689423 s Processing ZNF33B-SRR5197121.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.102904081345 s Creating peak regions... Creating peak regions took 15.9603700638 s Estimating background... Estimating background took 0.518361091614 s