INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF19-SRR5197075.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF19-SRR5197075/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.85399007797 s
Creating peak regions... Creating peak regions took 60.6625840664 s
Estimating background... Estimating background took 18.1026988029 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.43317699432 s
Creating peak regions... Creating peak regions took 30.2464001179 s
Estimating background... Estimating background took 8.03067302704 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.43652105331 s
Creating peak regions... Creating peak regions took 32.3039691448 s
Estimating background... Estimating background took 7.92968320847 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF19-SRR5197075.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF19-SRR5197075/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.69206309319 s
Creating peak regions... Creating peak regions took 74.0871610641 s
Estimating background... Estimating background took 20.5176329613 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.05734300613 s
Creating peak regions... Creating peak regions took 37.2792780399 s
Estimating background... Estimating background took 9.95932197571 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.22480487823 s
Creating peak regions... Creating peak regions took 40.2577629089 s
Estimating background... Estimating background took 9.69472098351 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.81047296524 s
Creating peak regions... Creating peak regions took 37.9313521385 s
Estimating background... Estimating background took 9.48754692078 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.81281805038 s
Creating peak regions... Creating peak regions took 32.947685957 s
Estimating background... Estimating background took 11.5712599754 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.3301680088 s
Creating peak regions... Creating peak regions took 32.9209299088 s
Estimating background... Estimating background took 6.7033188343 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.11343312263 s
Creating peak regions... Creating peak regions took 29.9035050869 s
Estimating background... Estimating background took 6.6736741066 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.00496101379 s
Creating peak regions... Creating peak regions took 27.1712248325 s
Estimating background... Estimating background took 6.52312994003 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.14126205444 s
Creating peak regions... Creating peak regions took 25.8153240681 s
Estimating background... Estimating background took 7.17985010147 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.75799894333 s
Creating peak regions... Creating peak regions took 24.1750199795 s
Estimating background... Estimating background took 5.19906497002 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.45923805237 s
Creating peak regions... Creating peak regions took 17.563849926 s
Estimating background... Estimating background took 4.91592502594 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.46816492081 s
Creating peak regions... Creating peak regions took 75.6279001236 s
Estimating background... Estimating background took 16.7404251099 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.6529340744 s
Creating peak regions... Creating peak regions took 19.8980100155 s
Estimating background... Estimating background took 5.41765284538 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.03546595573 s
Creating peak regions... Creating peak regions took 12.5954220295 s
Estimating background... Estimating background took 3.37859201431 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.26661014557 s
Creating peak regions... Creating peak regions took 15.2498919964 s
Estimating background... Estimating background took 4.43618607521 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.24244499207 s
Creating peak regions... Creating peak regions took 62.1098031998 s
Estimating background... Estimating background took 13.4137501717 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.72658395767 s
Creating peak regions... Creating peak regions took 56.6615450382 s
Estimating background... Estimating background took 10.3882250786 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.4406349659 s
Creating peak regions... Creating peak regions took 50.7373950481 s
Estimating background... Estimating background took 12.6121618748 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.32306599617 s
Creating peak regions... Creating peak regions took 48.5868630409 s
Estimating background... Estimating background took 13.1683239937 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.0161678791 s
Creating peak regions... Creating peak regions took 51.0053668022 s
Estimating background... Estimating background took 12.876470089 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.21293401718 s
Creating peak regions... Creating peak regions took 43.5562429428 s
Estimating background... Estimating background took 8.89875197411 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.67036318779 s
Creating peak regions... Creating peak regions took 39.6097979546 s
Estimating background... Estimating background took 8.93798589706 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.108427047729 s
Creating peak regions... Creating peak regions took 0.175135135651 s
Estimating background... Estimating background took 0.654509782791 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.37758398056 s
Creating peak regions... Creating peak regions took 50.6757180691 s
Estimating background... Estimating background took 13.3441479206 s


Processing ZNF19-SRR5197075.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.160216093063 s
Creating peak regions... Creating peak regions took 15.7813022137 s
Estimating background... Estimating background took 0.525871992111 s