INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP69-SRR5197042.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP69-SRR5197042/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.55244684219 s Creating peak regions... Creating peak regions took 63.8802371025 s Estimating background... Estimating background took 53.4997630119 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.64968490601 s Creating peak regions... Creating peak regions took 34.2857589722 s Estimating background... Estimating background took 20.4738059044 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.89269900322 s Creating peak regions... Creating peak regions took 35.1478369236 s Estimating background... Estimating background took 21.4669220448 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP69-SRR5197042.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP69-SRR5197042/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 6.68133115768 s Creating peak regions... Creating peak regions took 74.2411680222 s Estimating background... Estimating background took 60.7726089954 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.27933192253 s Creating peak regions... Creating peak regions took 39.4172019958 s Estimating background... Estimating background took 22.0756750107 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.34275603294 s Creating peak regions... Creating peak regions took 38.8379778862 s Estimating background... Estimating background took 23.7129030228 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.92192292213 s Creating peak regions... Creating peak regions took 39.0123109818 s Estimating background... Estimating background took 25.0836889744 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.02294778824 s Creating peak regions... Creating peak regions took 34.2362561226 s Estimating background... Estimating background took 26.6199090481 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.46482300758 s Creating peak regions... Creating peak regions took 30.9421539307 s Estimating background... Estimating background took 15.9296770096 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.21247696877 s Creating peak regions... Creating peak regions took 29.1768028736 s Estimating background... Estimating background took 17.2184500694 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.27619600296 s Creating peak regions... Creating peak regions took 27.6889870167 s Estimating background... Estimating background took 16.2560470104 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.75712394714 s Creating peak regions... Creating peak regions took 24.9101660252 s Estimating background... Estimating background took 18.7594759464 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.87659692764 s Creating peak regions... Creating peak regions took 23.050768137 s Estimating background... Estimating background took 12.3312709332 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.71730995178 s Creating peak regions... Creating peak regions took 17.8191599846 s Estimating background... Estimating background took 13.1886901855 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.69748997688 s Creating peak regions... Creating peak regions took 74.9706869125 s Estimating background... Estimating background took 39.5046601295 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.80577993393 s Creating peak regions... Creating peak regions took 20.2427339554 s Estimating background... Estimating background took 13.6343958378 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.48057699203 s Creating peak regions... Creating peak regions took 12.9677648544 s Estimating background... Estimating background took 7.26256608963 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.41389513016 s Creating peak regions... Creating peak regions took 15.7251529694 s Estimating background... Estimating background took 12.9915289879 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.37198805809 s Creating peak regions... Creating peak regions took 61.3146061897 s Estimating background... Estimating background took 29.8173971176 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.08939290047 s Creating peak regions... Creating peak regions took 55.5038299561 s Estimating background... Estimating background took 24.7531387806 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.42280602455 s Creating peak regions... Creating peak regions took 53.5653710365 s Estimating background... Estimating background took 30.082859993 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.57432389259 s Creating peak regions... Creating peak regions took 51.6769008636 s Estimating background... Estimating background took 33.7657241821 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.24013495445 s Creating peak regions... Creating peak regions took 47.8964459896 s Estimating background... Estimating background took 30.6992239952 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.43529415131 s Creating peak regions... Creating peak regions took 42.4223029613 s Estimating background... Estimating background took 22.2660429478 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.98830080032 s Creating peak regions... Creating peak regions took 39.9943950176 s Estimating background... Estimating background took 21.6354691982 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.111419200897 s Creating peak regions... Creating peak regions took 0.197149991989 s Estimating background... Estimating background took 0.701766014099 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.47233986855 s Creating peak regions... Creating peak regions took 47.948307991 s Estimating background... Estimating background took 34.8953008652 s Processing ZFP69-SRR5197042.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.20259308815 s Creating peak regions... Creating peak regions took 16.459608078 s Estimating background... Estimating background took 0.655116796494 s