INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS6-Rep2-GSM2601079/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.102973937988 s
Creating peak regions... Creating peak regions took 0.223899126053 s
Estimating background... Estimating background took 0.167584896088 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.356575012207 s
Creating peak regions... Creating peak regions took 0.444071054459 s
Estimating background... Estimating background took 0.312673091888 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0344879627228 s
Creating peak regions... Creating peak regions took 0.198490858078 s
Estimating background... Estimating background took 0.221014022827 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.103105068207 s
Creating peak regions... Creating peak regions took 0.908747911453 s
Estimating background... Estimating background took 0.416200876236 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0457270145416 s
Creating peak regions... Creating peak regions took 0.254919052124 s
Estimating background... Estimating background took 0.214206933975 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0352020263672 s
Creating peak regions... Creating peak regions took 0.0852670669556 s
Estimating background... Estimating background took 0.313816070557 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0761058330536 s
Creating peak regions... Creating peak regions took 0.278114080429 s
Estimating background... Estimating background took 0.211511850357 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0249390602112 s
Creating peak regions... Creating peak regions took 0.171967983246 s
Estimating background... Estimating background took 0.112768173218 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.1393699646 s
Creating peak regions... Creating peak regions took 0.5340051651 s
Estimating background... Estimating background took 0.522712945938 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0425341129303 s
Creating peak regions... Creating peak regions took 0.319885015488 s
Estimating background... Estimating background took 0.214565038681 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0580070018768 s
Creating peak regions... Creating peak regions took 0.389724969864 s
Estimating background... Estimating background took 1.04851794243 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0420751571655 s
Creating peak regions... Creating peak regions took 0.362383842468 s
Estimating background... Estimating background took 0.21547293663 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.103495836258 s
Creating peak regions... Creating peak regions took 0.543262004852 s
Estimating background... Estimating background took 0.417234897614 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0851800441742 s
Creating peak regions... Creating peak regions took 0.448433160782 s
Estimating background... Estimating background took 0.317378997803 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0636849403381 s
Creating peak regions... Creating peak regions took 0.461488008499 s
Estimating background... Estimating background took 0.313346862793 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.107666015625 s
Creating peak regions... Creating peak regions took 0.614432096481 s
Estimating background... Estimating background took 0.422938108444 s


Processing Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam
Reading in data... Reading data took 0.089684009552 s
Creating peak regions... Creating peak regions took 0.531826019287 s
Estimating background... Estimating background took 0.31572508812 s