INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS3-Rep1-GSM2601075/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.260293006897 s
Creating peak regions... Creating peak regions took 0.111654996872 s
Estimating background... Estimating background took 0.117146968842 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.319735050201 s
Creating peak regions... Creating peak regions took 0.215057134628 s
Estimating background... Estimating background took 0.212766170502 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.260924816132 s
Creating peak regions... Creating peak regions took 0.114840984344 s
Estimating background... Estimating background took 0.114481925964 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.835340023041 s
Creating peak regions... Creating peak regions took 0.517813920975 s
Estimating background... Estimating background took 0.32124710083 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.234792947769 s
Creating peak regions... Creating peak regions took 0.129385948181 s
Estimating background... Estimating background took 0.11239695549 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0154039859772 s
Creating peak regions... Creating peak regions took 0.0306499004364 s
Estimating background... Estimating background took 0.10945892334 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.44517993927 s
Creating peak regions... Creating peak regions took 0.178098917007 s
Estimating background... Estimating background took 0.216969966888 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.143512964249 s
Creating peak regions... Creating peak regions took 0.0800938606262 s
Estimating background... Estimating background took 0.111316919327 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.717075824738 s
Creating peak regions... Creating peak regions took 0.315277099609 s
Estimating background... Estimating background took 0.314112901688 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.232163190842 s
Creating peak regions... Creating peak regions took 0.157361030579 s
Estimating background... Estimating background took 0.114317178726 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.391759872437 s
Creating peak regions... Creating peak regions took 0.216890096664 s
Estimating background... Estimating background took 0.216876983643 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.309205055237 s
Creating peak regions... Creating peak regions took 0.215585947037 s
Estimating background... Estimating background took 0.112372159958 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.669669151306 s
Creating peak regions... Creating peak regions took 0.32418012619 s
Estimating background... Estimating background took 0.327250003815 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.538761138916 s
Creating peak regions... Creating peak regions took 0.265748977661 s
Estimating background... Estimating background took 0.215298891068 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.373819112778 s
Creating peak regions... Creating peak regions took 0.218279123306 s
Estimating background... Estimating background took 0.213837862015 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.625607013702 s
Creating peak regions... Creating peak regions took 0.313704967499 s
Estimating background... Estimating background took 0.22218298912 s


Processing Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam
Reading in data... Reading data took 0.449140071869 s
Creating peak regions... Creating peak regions took 0.241189002991 s
Estimating background... Estimating background took 0.214900970459 s