INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS15-Rep1-GSM2601083/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.62961602211 s
Creating peak regions... Creating peak regions took 0.142463922501 s
Estimating background... Estimating background took 0.125613927841 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.967490911484 s
Creating peak regions... Creating peak regions took 0.301476955414 s
Estimating background... Estimating background took 0.111635923386 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.938757181168 s
Creating peak regions... Creating peak regions took 0.110957145691 s
Estimating background... Estimating background took 0.115624904633 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 1.04790496826 s
Creating peak regions... Creating peak regions took 0.336264133453 s
Estimating background... Estimating background took 0.11364197731 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.372665882111 s
Creating peak regions... Creating peak regions took 0.140849113464 s
Estimating background... Estimating background took 0.111854076385 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0298340320587 s
Creating peak regions... Creating peak regions took 0.0289330482483 s
Estimating background... Estimating background took 0.124791145325 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 1.07119703293 s
Creating peak regions... Creating peak regions took 0.180685043335 s
Estimating background... Estimating background took 0.215929985046 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.209702014923 s
Creating peak regions... Creating peak regions took 0.0833821296692 s
Estimating background... Estimating background took 0.109489917755 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 1.11181998253 s
Creating peak regions... Creating peak regions took 0.276023864746 s
Estimating background... Estimating background took 0.420122861862 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.435009002686 s
Creating peak regions... Creating peak regions took 0.174792051315 s
Estimating background... Estimating background took 0.113623857498 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.496787071228 s
Creating peak regions... Creating peak regions took 0.21865105629 s
Estimating background... Estimating background took 0.110747814178 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.794906139374 s
Creating peak regions... Creating peak regions took 0.383297920227 s
Estimating background... Estimating background took 0.113579034805 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 1.35673809052 s
Creating peak regions... Creating peak regions took 0.548162937164 s
Estimating background... Estimating background took 0.319874048233 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.793936014175 s
Creating peak regions... Creating peak regions took 0.257641077042 s
Estimating background... Estimating background took 0.112977981567 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.62828207016 s
Creating peak regions... Creating peak regions took 0.246037960052 s
Estimating background... Estimating background took 0.110566854477 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.833483219147 s
Creating peak regions... Creating peak regions took 0.299759149551 s
Estimating background... Estimating background took 0.112848997116 s


Processing Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam
Reading in data... Reading data took 0.868361949921 s
Creating peak regions... Creating peak regions took 0.329564809799 s
Estimating background... Estimating background took 0.219691038132 s