INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_glucose_rep2-GSM1975224/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_glucose_rep2-GSM1975224/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_glucose_rep2-GSM1975224/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 0.671977043152 s
Creating peak regions... Creating peak regions took 0.10165810585 s
Estimating background... Estimating background took 0.430188894272 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 2.07609200478 s
Creating peak regions... Creating peak regions took 0.299404859543 s
Estimating background... Estimating background took 1.34986305237 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 0.880750179291 s
Creating peak regions... Creating peak regions took 0.104902029037 s
Estimating background... Estimating background took 0.626118898392 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 3.42077589035 s
Creating peak regions... Creating peak regions took 0.53798699379 s
Estimating background... Estimating background took 2.19659209251 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.0045030117 s
Creating peak regions... Creating peak regions took 0.133194923401 s
Estimating background... Estimating background took 0.839074850082 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 0.109606027603 s
Creating peak regions... Creating peak regions took 0.0446500778198 s
Estimating background... Estimating background took 0.113393068314 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.71689295769 s
Creating peak regions... Creating peak regions took 0.205738067627 s
Estimating background... Estimating background took 1.14798402786 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 0.904380083084 s
Creating peak regions... Creating peak regions took 0.116781949997 s
Estimating background... Estimating background took 0.5305788517 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 2.97048211098 s
Creating peak regions... Creating peak regions took 0.431708097458 s
Estimating background... Estimating background took 1.87425303459 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.33122396469 s
Creating peak regions... Creating peak regions took 0.223017930984 s
Estimating background... Estimating background took 0.940520048141 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.88061404228 s
Creating peak regions... Creating peak regions took 0.344011068344 s
Estimating background... Estimating background took 1.14344906807 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.57571983337 s
Creating peak regions... Creating peak regions took 0.246601104736 s
Estimating background... Estimating background took 1.15065789223 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 3.12800502777 s
Creating peak regions... Creating peak regions took 0.416332006454 s
Estimating background... Estimating background took 1.88368391991 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 2.46169686317 s
Creating peak regions... Creating peak regions took 0.325170040131 s
Estimating background... Estimating background took 1.58329987526 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 1.79211711884 s
Creating peak regions... Creating peak regions took 0.347684144974 s
Estimating background... Estimating background took 1.35522413254 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 3.01645517349 s
Creating peak regions... Creating peak regions took 0.404942035675 s
Estimating background... Estimating background took 1.66828179359 s


Processing Cst6p_glucose_rep2-GSM1975224/aligned.36mers.unique.bam
Reading in data... Reading data took 2.59758687019 s
Creating peak regions... Creating peak regions took 0.444004058838 s
Estimating background... Estimating background took 1.46126103401 s