INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_glucose_rep1-GSM1975223/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_glucose_rep1-GSM1975223/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_glucose_rep1-GSM1975223/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 0.705943107605 s
Creating peak regions... Creating peak regions took 0.103025913239 s
Estimating background... Estimating background took 0.33811211586 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 2.35736608505 s
Creating peak regions... Creating peak regions took 0.340585947037 s
Estimating background... Estimating background took 1.23212599754 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 0.772212028503 s
Creating peak regions... Creating peak regions took 0.11571097374 s
Estimating background... Estimating background took 0.627581119537 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 3.66747403145 s
Creating peak regions... Creating peak regions took 0.523803949356 s
Estimating background... Estimating background took 2.23736000061 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.1974439621 s
Creating peak regions... Creating peak regions took 0.154850006104 s
Estimating background... Estimating background took 0.737992048264 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0829699039459 s
Creating peak regions... Creating peak regions took 0.0449571609497 s
Estimating background... Estimating background took 0.111729860306 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.64454221725 s
Creating peak regions... Creating peak regions took 0.194169044495 s
Estimating background... Estimating background took 1.04376411438 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 0.92626786232 s
Creating peak regions... Creating peak regions took 0.12073302269 s
Estimating background... Estimating background took 0.529824018478 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 3.19973683357 s
Creating peak regions... Creating peak regions took 0.465759992599 s
Estimating background... Estimating background took 1.57065105438 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.49434113503 s
Creating peak regions... Creating peak regions took 0.219694852829 s
Estimating background... Estimating background took 0.87841796875 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.92615795135 s
Creating peak regions... Creating peak regions took 0.257075071335 s
Estimating background... Estimating background took 1.26013898849 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.69988918304 s
Creating peak regions... Creating peak regions took 0.258064031601 s
Estimating background... Estimating background took 1.13680791855 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 2.71287703514 s
Creating peak regions... Creating peak regions took 0.385217189789 s
Estimating background... Estimating background took 1.75412893295 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 2.32543706894 s
Creating peak regions... Creating peak regions took 0.385499954224 s
Estimating background... Estimating background took 1.18144702911 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 1.98641204834 s
Creating peak regions... Creating peak regions took 0.326120138168 s
Estimating background... Estimating background took 1.13615083694 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 3.14853692055 s
Creating peak regions... Creating peak regions took 0.516038179398 s
Estimating background... Estimating background took 1.56424593925 s


Processing Cst6p_glucose_rep1-GSM1975223/aligned.36mers.unique.bam
Reading in data... Reading data took 2.71178507805 s
Creating peak regions... Creating peak regions took 0.409674882889 s
Estimating background... Estimating background took 1.36005592346 s