INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_ethanol_rep2-GSM1975226/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_ethanol_rep2-GSM1975226/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_ethanol_rep2-GSM1975226/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 0.70778799057 s
Creating peak regions... Creating peak regions took 0.123864889145 s
Estimating background... Estimating background took 0.11993098259 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.03005385399 s
Creating peak regions... Creating peak regions took 0.218812942505 s
Estimating background... Estimating background took 0.313084840775 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 0.667340040207 s
Creating peak regions... Creating peak regions took 0.0859639644623 s
Estimating background... Estimating background took 0.214651823044 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 3.49631595612 s
Creating peak regions... Creating peak regions took 0.481981992722 s
Estimating background... Estimating background took 0.525523900986 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 0.946349859238 s
Creating peak regions... Creating peak regions took 0.131754159927 s
Estimating background... Estimating background took 0.214695930481 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 0.176070928574 s
Creating peak regions... Creating peak regions took 0.0512111186981 s
Estimating background... Estimating background took 0.110189914703 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 1.61145615578 s
Creating peak regions... Creating peak regions took 0.150027036667 s
Estimating background... Estimating background took 0.317771911621 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 0.68768620491 s
Creating peak regions... Creating peak regions took 0.0842409133911 s
Estimating background... Estimating background took 0.214308977127 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.65382003784 s
Creating peak regions... Creating peak regions took 0.320178985596 s
Estimating background... Estimating background took 0.526757001877 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 1.57704091072 s
Creating peak regions... Creating peak regions took 0.190243959427 s
Estimating background... Estimating background took 0.317967891693 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 1.95520997047 s
Creating peak regions... Creating peak regions took 0.201771020889 s
Estimating background... Estimating background took 0.317222118378 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.20044922829 s
Creating peak regions... Creating peak regions took 0.223144054413 s
Estimating background... Estimating background took 0.321563005447 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.97738409042 s
Creating peak regions... Creating peak regions took 0.363643884659 s
Estimating background... Estimating background took 0.731165885925 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.63677620888 s
Creating peak regions... Creating peak regions took 0.312216043472 s
Estimating background... Estimating background took 0.422893047333 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.40618991852 s
Creating peak regions... Creating peak regions took 0.254990100861 s
Estimating background... Estimating background took 0.523487091064 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 3.16143107414 s
Creating peak regions... Creating peak regions took 0.375608921051 s
Estimating background... Estimating background took 0.531652927399 s


Processing Cst6p_ethanol_rep2-GSM1975226/aligned.36mers.unique.bam
Reading in data... Reading data took 2.19971609116 s
Creating peak regions... Creating peak regions took 0.28333902359 s
Estimating background... Estimating background took 0.529213905334 s