INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_ethanol_rep1-GSM1975225/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_ethanol_rep1-GSM1975225/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Cst6p_ethanol_rep1-GSM1975225/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 0.561954975128 s
Creating peak regions... Creating peak regions took 0.117774009705 s
Estimating background... Estimating background took 0.142671823502 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.8593378067 s
Creating peak regions... Creating peak regions took 0.236351966858 s
Estimating background... Estimating background took 0.116142988205 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 0.743725061417 s
Creating peak regions... Creating peak regions took 0.106122970581 s
Estimating background... Estimating background took 0.113858938217 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 3.23205208778 s
Creating peak regions... Creating peak regions took 0.412439823151 s
Estimating background... Estimating background took 0.215364933014 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 0.825887918472 s
Creating peak regions... Creating peak regions took 0.122953891754 s
Estimating background... Estimating background took 0.111248016357 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 0.147802829742 s
Creating peak regions... Creating peak regions took 0.0570130348206 s
Estimating background... Estimating background took 0.114132881165 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.47663497925 s
Creating peak regions... Creating peak regions took 0.164474010468 s
Estimating background... Estimating background took 0.115007162094 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 0.666481971741 s
Creating peak regions... Creating peak regions took 0.0878450870514 s
Estimating background... Estimating background took 0.115114927292 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 2.28550195694 s
Creating peak regions... Creating peak regions took 0.294902086258 s
Estimating background... Estimating background took 0.21630191803 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.17266893387 s
Creating peak regions... Creating peak regions took 0.159264087677 s
Estimating background... Estimating background took 0.112523078918 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.59770298004 s
Creating peak regions... Creating peak regions took 0.205103158951 s
Estimating background... Estimating background took 0.113276958466 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.76477503777 s
Creating peak regions... Creating peak regions took 0.196616172791 s
Estimating background... Estimating background took 0.217481851578 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 2.75051093102 s
Creating peak regions... Creating peak regions took 0.305088043213 s
Estimating background... Estimating background took 0.318186044693 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 2.23053789139 s
Creating peak regions... Creating peak regions took 0.282049179077 s
Estimating background... Estimating background took 0.21222114563 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 1.93660092354 s
Creating peak regions... Creating peak regions took 0.233989953995 s
Estimating background... Estimating background took 0.214280128479 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 2.45613598824 s
Creating peak regions... Creating peak regions took 0.297826051712 s
Estimating background... Estimating background took 0.214512109756 s


Processing Cst6p_ethanol_rep1-GSM1975225/aligned.36mers.unique.bam
Reading in data... Reading data took 2.44260811806 s
Creating peak regions... Creating peak regions took 0.286726951599 s
Estimating background... Estimating background took 0.218770027161 s