============================================== 2018-06-06 14:54:54 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.bam --out GATA1_G1E-ER4_0h_Rep2-GSM1689012/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:55:34 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1_G1E-ER4_0h_Rep3-GSM1689013/aligned.36mers.unique.bam --out GATA1_G1E-ER4_0h_Rep3-GSM1689013/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 4299732 HitCounts: 6817746.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 237106 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 4934024 HitCounts: 6419195.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 338254 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 4721 Insignificant: 1735 Filtered: 830 Finish binding event prediction: 1.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 1741 Insignificant: 15788 Filtered: 286 Finish binding event prediction: 19.3s Refine read distribution from 1332 binding events. --------------------------- Events discovered Significant: 3439 Insignificant: 4134 Filtered: 740 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 684 Insignificant: 25357 Filtered: 150 Finish binding event prediction: 1.2m Refine read distribution from 476 binding events. ============================================== 2018-06-06 18:36:17 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_0h_Rep4-GSM1689027/aligned.36mers.unique.bam --out TAL1_G1E-ER4_0h_Rep4-GSM1689027/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 193112 HitCounts: 641185.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2018-06-06 18:36:23 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_0h_Rep3-GSM1689026/aligned.36mers.unique.bam --out TAL1_G1E-ER4_0h_Rep3-GSM1689026/aligned.36mers.unique.GPS The genome is segmented into 9892 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 191563 HitCounts: 1570715.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. ============================================== 2018-06-06 18:36:28 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_3h_Rep2-GSM1689030/aligned.36mers.unique.bam --out TAL1_G1E-ER4_3h_Rep2-GSM1689030/aligned.36mers.unique.GPS ============================================== 2018-06-06 18:36:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_24h_Rep3-GSM1689034/aligned.36mers.unique.bam --out TAL1_G1E-ER4_24h_Rep3-GSM1689034/aligned.36mers.unique.GPS ============================================== 2018-06-06 18:36:30 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E_Rep4-GSM1689023/aligned.36mers.unique.bam --out TAL1_G1E_Rep4-GSM1689023/aligned.36mers.unique.GPS The genome is segmented into 9674 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:36:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_0h_Rep2-GSM1689025/aligned.36mers.unique.bam --out TAL1_G1E-ER4_0h_Rep2-GSM1689025/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 382407 HitCounts: 3556463.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 25814 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:36:37 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_0h_Rep5-GSM1689028/aligned.36mers.unique.bam --out TAL1_G1E-ER4_0h_Rep5-GSM1689028/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 265549 HitCounts: 2458538.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. Original read count stats: _IP Bases: 951675 HitCounts: 3841671.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 92654 regions for analysis. Running with 4 threads ... The genome is segmented into 15899 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:36:48 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_3h_Rep3-GSM1689031/aligned.36mers.unique.bam --out TAL1_G1E-ER4_3h_Rep3-GSM1689031/aligned.36mers.unique.GPS ============================================== 2018-06-06 18:36:48 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.bam --out GATA1_G1E-ER4_24h_Rep3-GSM1689019/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 1468599 HitCounts: 5897070.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 48328 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:36:54 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_24h_Rep1-GSM1689032/aligned.36mers.unique.bam --out TAL1_G1E-ER4_24h_Rep1-GSM1689032/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 838693 HitCounts: 3185181.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 76653 regions for analysis. ============================================== 2018-06-06 18:37:00 Running with 4 threads ... Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E_Rep3-GSM1689022/aligned.36mers.unique.bam --out TAL1_G1E_Rep3-GSM1689022/aligned.36mers.unique.GPS Original read count stats: ============================================== 2018-06-06 18:37:01_IP Bases: 333734 HitCounts: 3496392.0 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E_Rep2-GSM1689021/aligned.36mers.unique.bam --out TAL1_G1E_Rep2-GSM1689021/aligned.36mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 20428 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:37:01--------------------------- Events discovered Significant: 8449 Insignificant: 8162 Filtered: 1052 Finish binding event prediction: 30.3s Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.bam --out GATA1_G1E-ER4_3h_Rep2-GSM1689015/aligned.36mers.unique.GPS Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 1233438 HitCounts: 1866313.0 ============================================== 2018-06-06 18:37:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GATA1_G1E-ER4_3h_Rep3-GSM1689016/aligned.36mers.unique.bam --out GATA1_G1E-ER4_3h_Rep3-GSM1689016/aligned.36mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. ============================================== 2018-06-06 18:37:03 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_3h_Rep1-GSM1689029/aligned.36mers.unique.bam --out TAL1_G1E-ER4_3h_Rep1-GSM1689029/aligned.36mers.unique.GPS The genome is segmented into 150042 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 6447 Insignificant: 4691 Filtered: 339 Finish binding event prediction: 2.2s Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 604770 HitCounts: 5991764.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. Original read count stats: _IP Bases: 441999 HitCounts: 4754153.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 44703 regions for analysis. Running with 4 threads ... The genome is segmented into 29156 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 557227 HitCounts: 5936590.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 42180 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:37:13 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt TAL1_G1E-ER4_24h_Rep2-GSM1689033/aligned.36mers.unique.bam --out TAL1_G1E-ER4_24h_Rep2-GSM1689033/aligned.36mers.unique.GPS --------------------------- Events discovered Significant: 4724 Insignificant: 19277 Filtered: 2049 Finish binding event prediction: 33.6s Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 1161290 HitCounts: 8024215.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 135161 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 9292 Insignificant: 8797 Filtered: 1232 Finish binding event prediction: 58.9s Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 826686 HitCounts: 8461420.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 74684 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 3969 Insignificant: 16219 Filtered: 1923 Finish binding event prediction: 30.4s Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 5271902 HitCounts: 6089868.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 358027 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 3307 Insignificant: 28872 Filtered: 369 Finish binding event prediction: 12.4s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 5662 Insignificant: 641 Filtered: 1117 Finish binding event prediction: 56.4s Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 3484 Insignificant: 8448 Filtered: 244 Finish binding event prediction: 9.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6190 Insignificant: 1029 Filtered: 1066 Finish binding event prediction: 56.3s Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 577 Insignificant: 35532 Filtered: 501 Finish binding event prediction: 54.6s Refine read distribution from 370 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 13864 Insignificant: 13687 Filtered: 1930 Finish binding event prediction: 1.2m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6322 Insignificant: 4694 Filtered: 502 Finish binding event prediction: 40.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 2776 Insignificant: 30907 Filtered: 1955 Finish binding event prediction: 47.7s Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 6076934 HitCounts: 7570282.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. The genome is segmented into 340487 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 10129 Insignificant: 3661 Filtered: 1864 Finish binding event prediction: 1.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 410 Insignificant: 68090 Filtered: 98 Finish binding event prediction: 16.5s --------------------------- Events discovered Significant: 8787 Insignificant: 13549 Filtered: 2663 Finish binding event prediction: 48.5s Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 2931 Insignificant: 39313 Filtered: 266 Finish binding event prediction: 1.0m Refine read distribution from 1667 binding events. --------------------------- Events discovered Significant: 1094 Insignificant: 56704 Filtered: 291 Finish binding event prediction: 17.5s Refine read distribution from 904 binding events. --------------------------- Events discovered Significant: 5792 Insignificant: 30167 Filtered: 129 Finish binding event prediction: 11.4s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 9493 Insignificant: 7911 Filtered: 682 Finish binding event prediction: 26.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 7589 Insignificant: 1880 Filtered: 1354 Finish binding event prediction: 1.9m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6039 Insignificant: 3938 Filtered: 228 Finish binding event prediction: 41.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 4990 Insignificant: 16977 Filtered: 266 Finish binding event prediction: 36.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 9038 Insignificant: 1822 Filtered: 1472 Finish binding event prediction: 1.7m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 12033 Insignificant: 3783 Filtered: 2331 Finish binding event prediction: 1.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 5794 Insignificant: 15359 Filtered: 125 Finish binding event prediction: 7.7s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 15813 Insignificant: 3596 Filtered: 3591 Finish binding event prediction: 1.5m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 4509 Insignificant: 11044 Filtered: 274 Finish binding event prediction: 15.3s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6449 Insignificant: 7569 Filtered: 223 Finish binding event prediction: 44.2s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 11942 Insignificant: 10501 Filtered: 20 Finish binding event prediction: 31.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 4725 Insignificant: 721 Filtered: 1008 Finish binding event prediction: 1.7m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 4716 Insignificant: 9206 Filtered: 247 Finish binding event prediction: 2.3m Refine read distribution from 2000 binding events.