INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF777-SRR5197237.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF777-SRR5197237/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 10.1731979847 s
Creating peak regions... Creating peak regions took 79.647870779 s
Estimating background... Estimating background took 60.8714790344 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.24323701859 s
Creating peak regions... Creating peak regions took 44.9162669182 s
Estimating background... Estimating background took 23.7143409252 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.99810099602 s
Creating peak regions... Creating peak regions took 39.4458491802 s
Estimating background... Estimating background took 21.3068449497 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF777-SRR5197237.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF777-SRR5197237/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 9.98107004166 s
Creating peak regions... Creating peak regions took 80.0158121586 s
Estimating background... Estimating background took 60.8172750473 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.14895796776 s
Creating peak regions... Creating peak regions took 44.4351007938 s
Estimating background... Estimating background took 23.7817509174 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.20610308647 s
Creating peak regions... Creating peak regions took 42.7540299892 s
Estimating background... Estimating background took 23.6911859512 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.38695716858 s
Creating peak regions... Creating peak regions took 41.9735209942 s
Estimating background... Estimating background took 24.8087909222 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.6765191555 s
Creating peak regions... Creating peak regions took 36.8260149956 s
Estimating background... Estimating background took 30.5150780678 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.63293004036 s
Creating peak regions... Creating peak regions took 33.0182437897 s
Estimating background... Estimating background took 16.243571043 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.39919805527 s
Creating peak regions... Creating peak regions took 32.9327330589 s
Estimating background... Estimating background took 16.4515690804 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.12874603271 s
Creating peak regions... Creating peak regions took 29.8537528515 s
Estimating background... Estimating background took 14.4760489464 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.62893795967 s
Creating peak regions... Creating peak regions took 26.268860817 s
Estimating background... Estimating background took 17.1177051067 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.84592294693 s
Creating peak regions... Creating peak regions took 24.7791039944 s
Estimating background... Estimating background took 13.7224168777 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.40782094002 s
Creating peak regions... Creating peak regions took 19.4556319714 s
Estimating background... Estimating background took 10.3699398041 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 8.65978813171 s
Creating peak regions... Creating peak regions took 78.1170809269 s
Estimating background... Estimating background took 42.1008780003 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.2798769474 s
Creating peak regions... Creating peak regions took 20.7975039482 s
Estimating background... Estimating background took 11.1284201145 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.69148302078 s
Creating peak regions... Creating peak regions took 13.7045328617 s
Estimating background... Estimating background took 8.71095991135 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.78672003746 s
Creating peak regions... Creating peak regions took 15.5619981289 s
Estimating background... Estimating background took 10.5189568996 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 7.22982406616 s
Creating peak regions... Creating peak regions took 65.1355621815 s
Estimating background... Estimating background took 32.953015089 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.62063694 s
Creating peak regions... Creating peak regions took 58.8593640327 s
Estimating background... Estimating background took 22.2384040356 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.92368888855 s
Creating peak regions... Creating peak regions took 55.0299270153 s
Estimating background... Estimating background took 33.8553240299 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 7.48566102982 s
Creating peak regions... Creating peak regions took 54.379057169 s
Estimating background... Estimating background took 37.1375229359 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.498898983 s
Creating peak regions... Creating peak regions took 51.1743881702 s
Estimating background... Estimating background took 30.8016629219 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.7984149456 s
Creating peak regions... Creating peak regions took 44.7835819721 s
Estimating background... Estimating background took 19.6030819416 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.14315605164 s
Creating peak regions... Creating peak regions took 41.8261620998 s
Estimating background... Estimating background took 20.9336230755 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.17706489563 s
Creating peak regions... Creating peak regions took 0.235028982162 s
Estimating background... Estimating background took 1.19487905502 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.16153001785 s
Creating peak regions... Creating peak regions took 48.289593935 s
Estimating background... Estimating background took 34.2139391899 s


Processing ZNF777-SRR5197237.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.209069013596 s
Creating peak regions... Creating peak regions took 15.9892191887 s
Estimating background... Estimating background took 0.907671928406 s