INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF77-SRR5197239.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF77-SRR5197239/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.81390285492 s
Creating peak regions... Creating peak regions took 64.5728349686 s
Estimating background... Estimating background took 43.5799398422 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.97764396667 s
Creating peak regions... Creating peak regions took 35.1326839924 s
Estimating background... Estimating background took 19.2657251358 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.75490808487 s
Creating peak regions... Creating peak regions took 34.7319409847 s
Estimating background... Estimating background took 17.2048361301 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF77-SRR5197239.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF77-SRR5197239/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.14016699791 s
Creating peak regions... Creating peak regions took 65.9283139706 s
Estimating background... Estimating background took 42.6848409176 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.0910949707 s
Creating peak regions... Creating peak regions took 35.1876759529 s
Estimating background... Estimating background took 18.9846458435 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.67685604095 s
Creating peak regions... Creating peak regions took 35.0631408691 s
Estimating background... Estimating background took 16.3900580406 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.7255461216 s
Creating peak regions... Creating peak regions took 37.0034320354 s
Estimating background... Estimating background took 18.1207640171 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.53063488007 s
Creating peak regions... Creating peak regions took 29.7968919277 s
Estimating background... Estimating background took 17.5410590172 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.77059793472 s
Creating peak regions... Creating peak regions took 27.7811880112 s
Estimating background... Estimating background took 11.5238640308 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.84122204781 s
Creating peak regions... Creating peak regions took 25.8529200554 s
Estimating background... Estimating background took 13.3824470043 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.79626202583 s
Creating peak regions... Creating peak regions took 22.8084981441 s
Estimating background... Estimating background took 12.1476039886 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.10050201416 s
Creating peak regions... Creating peak regions took 22.0003890991 s
Estimating background... Estimating background took 15.5009660721 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.38926482201 s
Creating peak regions... Creating peak regions took 20.3898539543 s
Estimating background... Estimating background took 8.33780479431 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.50679183006 s
Creating peak regions... Creating peak regions took 16.2944159508 s
Estimating background... Estimating background took 10.3392391205 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.51124119759 s
Creating peak regions... Creating peak regions took 61.8366949558 s
Estimating background... Estimating background took 28.2439498901 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.48106908798 s
Creating peak regions... Creating peak regions took 18.0228469372 s
Estimating background... Estimating background took 9.64004898071 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.792684078217 s
Creating peak regions... Creating peak regions took 12.7449119091 s
Estimating background... Estimating background took 5.49781394005 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.20257496834 s
Creating peak regions... Creating peak regions took 13.9975309372 s
Estimating background... Estimating background took 9.78380179405 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.55801510811 s
Creating peak regions... Creating peak regions took 50.8322930336 s
Estimating background... Estimating background took 22.6863861084 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.71924209595 s
Creating peak regions... Creating peak regions took 47.9738528728 s
Estimating background... Estimating background took 16.8688678741 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.46454405785 s
Creating peak regions... Creating peak regions took 46.5416018963 s
Estimating background... Estimating background took 20.9953079224 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.49813699722 s
Creating peak regions... Creating peak regions took 44.3102369308 s
Estimating background... Estimating background took 23.9067089558 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.1743221283 s
Creating peak regions... Creating peak regions took 41.546241045 s
Estimating background... Estimating background took 21.6305570602 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.64424991608 s
Creating peak regions... Creating peak regions took 38.5955197811 s
Estimating background... Estimating background took 17.1830370426 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.84552311897 s
Creating peak regions... Creating peak regions took 42.882573843 s
Estimating background... Estimating background took 16.8019590378 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.10662984848 s
Creating peak regions... Creating peak regions took 0.187395095825 s
Estimating background... Estimating background took 1.55009102821 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.43331003189 s
Creating peak regions... Creating peak regions took 42.5778198242 s
Estimating background... Estimating background took 23.5391681194 s


Processing ZNF77-SRR5197239.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.107313871384 s
Creating peak regions... Creating peak regions took 14.246917963 s
Estimating background... Estimating background took 0.537621021271 s