INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF382-rep2-SRR5197126/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.91608309746 s
Creating peak regions... Creating peak regions took 76.6769599915 s
Estimating background... Estimating background took 33.8539071083 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.31530594826 s
Creating peak regions... Creating peak regions took 39.775468111 s
Estimating background... Estimating background took 12.9080789089 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.35248804092 s
Creating peak regions... Creating peak regions took 42.224864006 s
Estimating background... Estimating background took 12.2461669445 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF382-rep2-SRR5197126/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.77744889259 s
Creating peak regions... Creating peak regions took 73.8325119019 s
Estimating background... Estimating background took 34.9949178696 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.76398801804 s
Creating peak regions... Creating peak regions took 40.3439788818 s
Estimating background... Estimating background took 13.4753129482 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.4885430336 s
Creating peak regions... Creating peak regions took 41.1227939129 s
Estimating background... Estimating background took 13.0343530178 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.51257395744 s
Creating peak regions... Creating peak regions took 40.2112829685 s
Estimating background... Estimating background took 14.4273300171 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.21875596046 s
Creating peak regions... Creating peak regions took 36.0770049095 s
Estimating background... Estimating background took 14.0185201168 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.68724608421 s
Creating peak regions... Creating peak regions took 31.1569831371 s
Estimating background... Estimating background took 9.06509995461 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.80927014351 s
Creating peak regions... Creating peak regions took 29.6968939304 s
Estimating background... Estimating background took 12.0223331451 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.71079587936 s
Creating peak regions... Creating peak regions took 27.3600029945 s
Estimating background... Estimating background took 9.01515388489 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.25603699684 s
Creating peak regions... Creating peak regions took 25.6843900681 s
Estimating background... Estimating background took 12.6237909794 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.30248498917 s
Creating peak regions... Creating peak regions took 23.7042250633 s
Estimating background... Estimating background took 7.30625486374 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.52282691002 s
Creating peak regions... Creating peak regions took 19.1724600792 s
Estimating background... Estimating background took 9.19901704788 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.08167600632 s
Creating peak regions... Creating peak regions took 77.0597269535 s
Estimating background... Estimating background took 29.0381779671 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.35702991486 s
Creating peak regions... Creating peak regions took 20.4094009399 s
Estimating background... Estimating background took 8.13118600845 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.872575044632 s
Creating peak regions... Creating peak regions took 15.1781170368 s
Estimating background... Estimating background took 5.93996286392 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.22972583771 s
Creating peak regions... Creating peak regions took 14.8609111309 s
Estimating background... Estimating background took 8.2932138443 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.16185498238 s
Creating peak regions... Creating peak regions took 58.5517199039 s
Estimating background... Estimating background took 17.3928918839 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.99107289314 s
Creating peak regions... Creating peak regions took 57.8163461685 s
Estimating background... Estimating background took 12.943789959 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.79689192772 s
Creating peak regions... Creating peak regions took 56.192884922 s
Estimating background... Estimating background took 16.8294620514 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.38794088364 s
Creating peak regions... Creating peak regions took 51.2549610138 s
Estimating background... Estimating background took 18.5211229324 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.02735590935 s
Creating peak regions... Creating peak regions took 47.7407929897 s
Estimating background... Estimating background took 17.8615679741 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.48559093475 s
Creating peak regions... Creating peak regions took 43.8044779301 s
Estimating background... Estimating background took 12.8028130531 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.11092185974 s
Creating peak regions... Creating peak regions took 39.7659101486 s
Estimating background... Estimating background took 12.1198871136 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0906808376312 s
Creating peak regions... Creating peak regions took 0.153679132462 s
Estimating background... Estimating background took 0.529902935028 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.02795600891 s
Creating peak regions... Creating peak regions took 47.5700478554 s
Estimating background... Estimating background took 16.5133261681 s


Processing ZNF382-rep2-SRR5197126.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.105218887329 s
Creating peak regions... Creating peak regions took 14.0576770306 s
Estimating background... Estimating background took 0.555610895157 s